Psyllid ID: psy12242
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 498 | 2.2.26 [Sep-21-2011] | |||||||
| P17809 | 492 | Solute carrier family 2, | yes | N/A | 0.935 | 0.947 | 0.449 | 1e-112 | |
| P11167 | 492 | Solute carrier family 2, | yes | N/A | 0.937 | 0.949 | 0.446 | 1e-112 | |
| P27674 | 492 | Solute carrier family 2, | yes | N/A | 0.937 | 0.949 | 0.448 | 1e-112 | |
| P11166 | 492 | Solute carrier family 2, | yes | N/A | 0.937 | 0.949 | 0.444 | 1e-111 | |
| P13355 | 492 | Solute carrier family 2, | yes | N/A | 0.937 | 0.949 | 0.440 | 1e-110 | |
| P46896 | 490 | Solute carrier family 2, | yes | N/A | 0.925 | 0.940 | 0.439 | 1e-108 | |
| P28568 | 496 | Solute carrier family 2, | no | N/A | 0.929 | 0.933 | 0.431 | 1e-103 | |
| Q27994 | 509 | Solute carrier family 2, | no | N/A | 0.947 | 0.927 | 0.435 | 1e-103 | |
| P58352 | 494 | Solute carrier family 2, | no | N/A | 0.915 | 0.923 | 0.437 | 1e-103 | |
| P47843 | 494 | Solute carrier family 2, | N/A | N/A | 0.915 | 0.923 | 0.437 | 1e-102 |
| >sp|P17809|GTR1_MOUSE Solute carrier family 2, facilitated glucose transporter member 1 OS=Mus musculus GN=Slc2a1 PE=1 SV=4 | Back alignment and function desciption |
|---|
Score = 407 bits (1045), Expect = e-112, Method: Compositional matrix adjust.
Identities = 214/476 (44%), Positives = 307/476 (64%), Gaps = 10/476 (2%)
Query: 20 PPSQGLNGKLAFAISASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPV 79
P S+ + G+L A+ + LGS Q GYNTGV NAPQK+I E+ +R
Sbjct: 3 PSSKKVTGRLMLAVGGAVLGS-LQFGYNTGVINAPQKVIEEFYNQTWNHR------YGEP 55
Query: 80 IEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKA 139
I + +T +++++V+IF GG+IG + G RFGR+ +L+ N+ +AA+L GFSK
Sbjct: 56 IPSTTLTTLWSLSVAIFSVGGMIGSFSVGLFVNRFGRRNSMLMMNLLAFVAAVLMGFSKL 115
Query: 140 FSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILG 199
S+EM+ILGRF+IG+ GL G PMY+ E+SP LRGA+GT++QL I + I+I+Q+ G
Sbjct: 116 GKSFEMLILGRFIIGVYCGLTTGFVPMYVGEVSPTALRGALGTLHQLGIVVGILIAQVFG 175
Query: 200 LGGLLGTADGWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQRALSWLRGTI 259
L ++G AD WPLLL+ +P + Q I LPFCPESP+++L+++ +E A+ L LRGT
Sbjct: 176 LDSIMGNADLWPLLLSVIFIPALLQCILLPFCPESPRFLLINRNEENRAKSVLKKLRGTA 235
Query: 260 EVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFST 319
+V ++ EM+ E + KV++ E+F + R P+ I++ + ++QQLSGINAV Y+ST
Sbjct: 236 DVTRDLQEMKEEGRQMMREKKVTILELFRSPAYRQPILIAVVLQLSQQLSGINAVFYYST 295
Query: 320 KIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTI 379
IF A + +AT+G G +N T+VSL +VE +GR+TL LIG G+ VL+TI
Sbjct: 296 SIFEKAGVQQPV--YATIGSGIVNTAFTVVSLFVVERAGRRTLHLIGLAGMAGCAVLMTI 353
Query: 380 VMQFVEIFV-MSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWT 438
+ +E MS I+ + FV FF VGPG IPWF+V+ELFSQ RP A ++A NWT
Sbjct: 354 ALALLERLPWMSYLSIVAIFGFVAFFEVGPGPIPWFIVAELFSQGPRPAAIAVAGFSNWT 413
Query: 439 ANFIVGLGFLPIESIIHGYVFTIFAVLQAMFVLFIYKKVPETKNKTQEEIAAMFRQ 494
+NFIVG+ F +E + YVF IF VL +F +F Y KVPETK +T +EIA+ FRQ
Sbjct: 414 SNFIVGMCFQYVEQLCGPYVFIIFTVLLVLFFIFTYFKVPETKGRTFDEIASGFRQ 469
|
Facilitative glucose transporter. This isoform may be responsible for constitutive or basal glucose uptake. Has a very broad substrate specificity; can transport a wide range of aldoses including both pentoses and hexoses. Mus musculus (taxid: 10090) |
| >sp|P11167|GTR1_RAT Solute carrier family 2, facilitated glucose transporter member 1 OS=Rattus norvegicus GN=Slc2a1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 406 bits (1044), Expect = e-112, Method: Compositional matrix adjust.
Identities = 213/477 (44%), Positives = 307/477 (64%), Gaps = 10/477 (2%)
Query: 19 RPPSQGLNGKLAFAISASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNP 78
P S+ + G+L A+ + LGS Q GYNTGV NAPQK+I E+ +R
Sbjct: 2 EPSSKKVTGRLMLAVGGAVLGS-LQFGYNTGVINAPQKVIEEFYNQTWNHR------YGE 54
Query: 79 VIEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSK 138
I + +T +++++V+IF GG+IG + G RFGR+ +L+ N+ ++A+L GFSK
Sbjct: 55 SIPSTTLTTLWSLSVAIFSVGGMIGSFSVGLFVNRFGRRNSMLMMNLLAFVSAVLMGFSK 114
Query: 139 AFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQIL 198
S+EM+ILGRF+IG+ GL G PMY+ E+SP LRGA+GT++QL I + I+I+Q+
Sbjct: 115 LGKSFEMLILGRFIIGVYCGLTTGFVPMYVGEVSPTALRGALGTLHQLGIVVGILIAQVF 174
Query: 199 GLGGLLGTADGWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQRALSWLRGT 258
GL ++G AD WPLLL+ +P + Q I LPFCPESP+++L+++ +E A+ L LRGT
Sbjct: 175 GLDSIMGNADLWPLLLSVIFIPALLQCILLPFCPESPRFLLINRNEENRAKSVLKKLRGT 234
Query: 259 IEVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFS 318
+V ++ EM+ E + KV++ E+F + R P+ I++ + ++QQLSGINAV Y+S
Sbjct: 235 ADVTRDLQEMKEEGRQMMREKKVTILELFRSPAYRQPILIAVVLQLSQQLSGINAVFYYS 294
Query: 319 TKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLT 378
T IF A + +AT+G G +N T+VSL +VE +GR+TL LIG G+ VL+T
Sbjct: 295 TSIFEKAGVQQPV--YATIGSGIVNTAFTVVSLFVVERAGRRTLHLIGLAGMAGCAVLMT 352
Query: 379 IVMQFVEIFV-MSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINW 437
I + +E MS I+ + FV FF VGPG IPWF+V+ELFSQ RP A ++A NW
Sbjct: 353 IALALLEQLPWMSYLSIVAIFGFVAFFEVGPGPIPWFIVAELFSQGPRPAAVAVAGFSNW 412
Query: 438 TANFIVGLGFLPIESIIHGYVFTIFAVLQAMFVLFIYKKVPETKNKTQEEIAAMFRQ 494
T+NFIVG+ F +E + YVF IF VL +F +F Y KVPETK +T +EIA+ FRQ
Sbjct: 413 TSNFIVGMCFQYVEQLCGPYVFIIFTVLLVLFFIFTYFKVPETKGRTFDEIASGFRQ 469
|
Facilitative glucose transporter. This isoform may be responsible for constitutive or basal glucose uptake. Has a very broad substrate specificity; can transport a wide range of aldoses including both pentoses and hexoses. Rattus norvegicus (taxid: 10116) |
| >sp|P27674|GTR1_BOVIN Solute carrier family 2, facilitated glucose transporter member 1 OS=Bos taurus GN=SLC2A1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 404 bits (1038), Expect = e-112, Method: Compositional matrix adjust.
Identities = 214/477 (44%), Positives = 309/477 (64%), Gaps = 10/477 (2%)
Query: 19 RPPSQGLNGKLAFAISASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNP 78
P S+ L G+L A+ + LGS Q GYNTGV NAPQK+I E+ N++ P
Sbjct: 2 EPTSKKLTGRLMLAVGGAVLGS-LQFGYNTGVINAPQKVIEEFY-----NQTWVQRYGEP 55
Query: 79 VIEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSK 138
I + +T +++++V+IF GG+IG + G RFGR+ +L+ N+ ++A+L GFSK
Sbjct: 56 -IPPATLTTLWSLSVAIFSVGGMIGSFSVGLFVNRFGRRNSMLMMNLLAFVSAVLMGFSK 114
Query: 139 AFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQIL 198
S+EM+ILGRF+IG+ GL G PMY+ E+SP LRGA+GT++QL I + I+I+Q+
Sbjct: 115 LGKSFEMLILGRFIIGVYCGLTTGFVPMYVGEVSPTELRGALGTLHQLGIVVGILIAQVF 174
Query: 199 GLGGLLGTADGWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQRALSWLRGT 258
GL ++G + WPLLL+ +P + Q I LPFCPESP+++L+++ +E A+ L LRGT
Sbjct: 175 GLDSIMGNQELWPLLLSVIFIPALLQCILLPFCPESPRFLLINRNEENRAKSVLKKLRGT 234
Query: 259 IEVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFS 318
+V ++ EM+ E + KV++ E+F +A R P+ I++ + ++QQLSGINAV Y+S
Sbjct: 235 ADVTRDLQEMKEESRQMMREKKVTILELFRSAAYRQPILIAVVLQLSQQLSGINAVFYYS 294
Query: 319 TKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLT 378
T IF A + +AT+G G +N T+VSL +VE +GR+TL LIG G+ VL+T
Sbjct: 295 TSIFEKAGVQQPV--YATIGSGIVNTAFTVVSLFVVERAGRRTLHLIGLAGMAGCAVLMT 352
Query: 379 IVMQFVEIFV-MSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINW 437
I + +E MS I+ + FV FF VGPG IPWF+V+ELFSQ RP A ++A NW
Sbjct: 353 IALALLERLPWMSYLSIVAIFGFVAFFEVGPGPIPWFIVAELFSQGPRPAAIAVAGFSNW 412
Query: 438 TANFIVGLGFLPIESIIHGYVFTIFAVLQAMFVLFIYKKVPETKNKTQEEIAAMFRQ 494
T+NFIVG+ F +E + YVF IF VL +F +F Y KVPETK +T +EIA+ FRQ
Sbjct: 413 TSNFIVGMCFQYVEQLCGPYVFIIFTVLLVLFFIFTYFKVPETKGRTFDEIASGFRQ 469
|
Facilitative glucose transporter. This isoform may be responsible for constitutive or basal glucose uptake. Has a very broad substrate specificity; can transport a wide range of aldoses including both pentoses and hexoses. Bos taurus (taxid: 9913) |
| >sp|P11166|GTR1_HUMAN Solute carrier family 2, facilitated glucose transporter member 1 OS=Homo sapiens GN=SLC2A1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 404 bits (1038), Expect = e-111, Method: Compositional matrix adjust.
Identities = 212/477 (44%), Positives = 306/477 (64%), Gaps = 10/477 (2%)
Query: 19 RPPSQGLNGKLAFAISASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNP 78
P S+ L G+L A+ + LGS Q GYNTGV NAPQK+I E+ +R
Sbjct: 2 EPSSKKLTGRLMLAVGGAVLGS-LQFGYNTGVINAPQKVIEEFYNQTWVHR------YGE 54
Query: 79 VIEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSK 138
I + +T +++++V+IF GG+IG + G RFGR+ +L+ N+ ++A+L GFSK
Sbjct: 55 SILPTTLTTLWSLSVAIFSVGGMIGSFSVGLFVNRFGRRNSMLMMNLLAFVSAVLMGFSK 114
Query: 139 AFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQIL 198
S+EM+ILGRF+IG+ GL G PMY+ E+SP LRGA+GT++QL I + I+I+Q+
Sbjct: 115 LGKSFEMLILGRFIIGVYCGLTTGFVPMYVGEVSPTALRGALGTLHQLGIVVGILIAQVF 174
Query: 199 GLGGLLGTADGWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQRALSWLRGT 258
GL ++G D WPLLL+ +P + Q I LPFCPESP+++L+++ +E A+ L LRGT
Sbjct: 175 GLDSIMGNKDLWPLLLSIIFIPALLQCIVLPFCPESPRFLLINRNEENRAKSVLKKLRGT 234
Query: 259 IEVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFS 318
+V ++ EM+ E + KV++ E+F + R P+ I++ + ++QQLSGINAV Y+S
Sbjct: 235 ADVTHDLQEMKEESRQMMREKKVTILELFRSPAYRQPILIAVVLQLSQQLSGINAVFYYS 294
Query: 319 TKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLT 378
T IF A + +AT+G G +N T+VSL +VE +GR+TL LIG G+ +L+T
Sbjct: 295 TSIFEKAGVQQPV--YATIGSGIVNTAFTVVSLFVVERAGRRTLHLIGLAGMAGCAILMT 352
Query: 379 IVMQFVEIFV-MSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINW 437
I + +E MS I+ + FV FF VGPG IPWF+V+ELFSQ RP A ++A NW
Sbjct: 353 IALALLEQLPWMSYLSIVAIFGFVAFFEVGPGPIPWFIVAELFSQGPRPAAIAVAGFSNW 412
Query: 438 TANFIVGLGFLPIESIIHGYVFTIFAVLQAMFVLFIYKKVPETKNKTQEEIAAMFRQ 494
T+NFIVG+ F +E + YVF IF VL +F +F Y KVPETK +T +EIA+ FRQ
Sbjct: 413 TSNFIVGMCFQYVEQLCGPYVFIIFTVLLVLFFIFTYFKVPETKGRTFDEIASGFRQ 469
|
Facilitative glucose transporter. This isoform may be responsible for constitutive or basal glucose uptake. Has a very broad substrate specificity; can transport a wide range of aldoses including both pentoses and hexoses. Homo sapiens (taxid: 9606) |
| >sp|P13355|GTR1_RABIT Solute carrier family 2, facilitated glucose transporter member 1 OS=Oryctolagus cuniculus GN=SLC2A1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 398 bits (1023), Expect = e-110, Method: Compositional matrix adjust.
Identities = 210/477 (44%), Positives = 303/477 (63%), Gaps = 10/477 (2%)
Query: 19 RPPSQGLNGKLAFAISASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNP 78
P S+ + G+L A+ + LGS Q GYNTGV NAPQK+I E+ +R
Sbjct: 2 EPSSKKVTGRLMLAVGGAVLGS-LQFGYNTGVINAPQKVIEEFYNQTWIHR------YGE 54
Query: 79 VIEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSK 138
I + +T +++++V+IF GG+IG + G RFGR+ +L+ N+ ++A+L GFSK
Sbjct: 55 RILPTTLTTLWSLSVAIFSVGGMIGSFSVGLFVNRFGRRNSMLMMNLLAFVSAVLMGFSK 114
Query: 139 AFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQIL 198
S+EM+ILGRF+IG+ GL G PMY+ E+SP LRGA+GT++QL I + I+I+Q+
Sbjct: 115 LAKSFEMLILGRFIIGVYCGLTTGFVPMYVGEVSPTALRGALGTLHQLGIVVGILIAQVF 174
Query: 199 GLGGLLGTADGWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQRALSWLRGT 258
GL ++G D WPLLL+ VP + Q I LP CPESP+++L+++ +E A+ L LRG
Sbjct: 175 GLDSIMGNEDLWPLLLSVIFVPALLQCIVLPLCPESPRFLLINRNEENRAKSVLKKLRGN 234
Query: 259 IEVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFS 318
+V ++ EM+ E + KV++ E+F + R P+ ++ + ++QQLSGINAV Y+S
Sbjct: 235 ADVTRDLQEMKEESRQMMREKKVTILELFRSPAYRQPILSAVVLQLSQQLSGINAVFYYS 294
Query: 319 TKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLT 378
T IF A + +AT+G G +N T+VSL +VE +GR+TL LIG G+ VL+T
Sbjct: 295 TSIFEKAGVQQPV--YATIGSGIVNTAFTVVSLFVVERAGRRTLHLIGLAGMAACAVLMT 352
Query: 379 IVMQFVEIFV-MSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINW 437
I + +E MS I+ + FV FF VGPG IPWF+V+ELFSQ RP A ++A NW
Sbjct: 353 IALALLEQLPWMSYLSIVAIFGFVAFFEVGPGPIPWFIVAELFSQGPRPAAVAVAGFSNW 412
Query: 438 TANFIVGLGFLPIESIIHGYVFTIFAVLQAMFVLFIYKKVPETKNKTQEEIAAMFRQ 494
T+NFIVG+ F +E + YVF IF VL +F +F Y KVPETK +T +EIA+ FRQ
Sbjct: 413 TSNFIVGMCFQYVEQLCGPYVFIIFTVLLVLFFIFTYFKVPETKGRTFDEIASGFRQ 469
|
Facilitative glucose transporter. This isoform may be responsible for constitutive or basal glucose uptake. Has a very broad substrate specificity; can transport a wide range of aldoses including both pentoses and hexoses. Oryctolagus cuniculus (taxid: 9986) |
| >sp|P46896|GTR1_CHICK Solute carrier family 2, facilitated glucose transporter member 1 OS=Gallus gallus GN=SLC2A1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 391 bits (1004), Expect = e-108, Method: Compositional matrix adjust.
Identities = 207/471 (43%), Positives = 299/471 (63%), Gaps = 10/471 (2%)
Query: 25 LNGKLAFAISASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQ 84
+ +L A+ + LGS Q GYNTGV N PQK+I ++ R I +
Sbjct: 7 MTARLMLAVGGAVLGS-LQFGYNTGVINRPQKVIEDFYNHTWLYR------YEEPISPAT 59
Query: 85 VTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYE 144
+T +++++V+IF GG+IG + G RFGR+ +L++N+ LAA+L GFSK S+E
Sbjct: 60 LTTLWSLSVAIFSVGGMIGSFSVGLFVNRFGRRNSMLMSNILAFLAAVLMGFSKMALSFE 119
Query: 145 MIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLL 204
M+ILGRF+IG+ SGL G PMY+ E+SP LRGA+GT +QL I + I+I+Q+ GL ++
Sbjct: 120 MLILGRFIIGLYSGLTTGFVPMYVGEVSPTALRGALGTFHQLGIVLGILIAQVFGLDLIM 179
Query: 205 GTADGWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDE 264
G WPLLL F VP + Q I LPF PESP+++L+++ +E +A+ L LRGT +V +
Sbjct: 180 GNDSLWPLLLGFIFVPALLQCIILPFAPESPRFLLINRNEENKAKSVLKKLRGTTDVSSD 239
Query: 265 MDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTM 324
+ EM+ E + KV++ E+F + R P+ I++ + ++QQLSGINAV Y+ST IF
Sbjct: 240 LQEMKEESRQMMREKKVTIMELFRSPMYRQPILIAIVLQLSQQLSGINAVFYYSTSIFEK 299
Query: 325 AQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFV 384
+ + +AT+G G +N T+VSL +VE +GR+TL LIG G+ +L+TI + +
Sbjct: 300 SGVEQPV--YATIGSGVVNTAFTVVSLFVVERAGRRTLHLIGLAGMAGCAILMTIALTLL 357
Query: 385 EIFV-MSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIV 443
+ MS I+ + FV FF +GPG IPWF+V+ELFSQ RP A ++A NWT+NFIV
Sbjct: 358 DQMPWMSYLSIVAIFGFVAFFEIGPGPIPWFIVAELFSQGPRPAAFAVAGLSNWTSNFIV 417
Query: 444 GLGFLPIESIIHGYVFTIFAVLQAMFVLFIYKKVPETKNKTQEEIAAMFRQ 494
G+GF I + YVF IF VL +F +F Y KVPETK +T +EIA FRQ
Sbjct: 418 GMGFQYIAQLCGSYVFIIFTVLLVLFFIFTYFKVPETKGRTFDEIAYRFRQ 468
|
Facilitative glucose transporter. This isoform may be responsible for constitutive or basal glucose uptake. Has a very broad substrate specificity; can transport a wide range of aldoses including both pentoses and hexoses. Gallus gallus (taxid: 9031) |
| >sp|P28568|GTR3_CHICK Solute carrier family 2, facilitated glucose transporter member 3 OS=Gallus gallus GN=SLC2A3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 375 bits (964), Expect = e-103, Method: Compositional matrix adjust.
Identities = 204/473 (43%), Positives = 298/473 (63%), Gaps = 10/473 (2%)
Query: 22 SQGLNGKLAFAISASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIE 81
+ + L +A+S +A+GS Q GYNTGV NAP+K+I + L RS T++P +
Sbjct: 4 KKKITASLIYAVSVAAIGS-LQFGYNTGVINAPEKIIQAFYNRTLSQRS--GETISPEL- 59
Query: 82 QSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFS 141
+T +++++V+IF GG+IG + RFGR+ +L+ NV L SK
Sbjct: 60 ---LTSLWSLSVAIFSVGGMIGSFSVSLFFNRFGRRNSMLLVNVLAFAGGALMALSKIAK 116
Query: 142 SYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLG 201
+ EM+I+GRF+IG+ GL G PMY++E+SP LRGA GT+ QL I + I+++QI GL
Sbjct: 117 AVEMLIIGRFIIGLFCGLCTGFVPMYISEVSPTSLRGAFGTLNQLGIVVGILVAQIFGLE 176
Query: 202 GLLGTADGWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQRALSWLRGTIEV 261
G++GT WPLLL FT+VP + Q + L FCPESP+++L++K +E +AQ L LRGT +V
Sbjct: 177 GIMGTEALWPLLLGFTIVPAVLQCVALLFCPESPRFLLINKMEEEKAQTVLQKLRGTQDV 236
Query: 262 HDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKI 321
++ EM+ E + K ++ E+F + R P+ IS+T+ ++QQLSGINAV Y+ST I
Sbjct: 237 SQDISEMKEESAKMSQEKKATVLELFRSPNYRQPIIISITLQLSQQLSGINAVFYYSTGI 296
Query: 322 FTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVM 381
F A + T +AT+G G +N V T+VSL LVE +GR+TL L+G G+ V ++TI +
Sbjct: 297 FERAGI--TQPVYATIGAGVVNTVFTVVSLFLVERAGRRTLHLVGLGGMAVCAAVMTIAL 354
Query: 382 QFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANF 441
E ++ I I+ FV F +GPG IPWF+V+ELFSQ RP A ++A NWT+NF
Sbjct: 355 ALKEKWIRYI-SIVATFGFVALFEIGPGPIPWFIVAELFSQGPRPAAMAVAGCSNWTSNF 413
Query: 442 IVGLGFLPIESIIHGYVFTIFAVLQAMFVLFIYKKVPETKNKTQEEIAAMFRQ 494
+VG+ F E + YVF IF V +F +F Y KVPETK +T E+I+ F +
Sbjct: 414 LVGMLFPYAEKLCGPYVFLIFLVFLLIFFIFTYFKVPETKGRTFEDISRGFEE 466
|
Facilitative glucose transporter. Probably a neuronal glucose transporter. Gallus gallus (taxid: 9031) |
| >sp|Q27994|GTR4_BOVIN Solute carrier family 2, facilitated glucose transporter member 4 OS=Bos taurus GN=SLC2A4 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 374 bits (961), Expect = e-103, Method: Compositional matrix adjust.
Identities = 208/478 (43%), Positives = 304/478 (63%), Gaps = 6/478 (1%)
Query: 18 NRPPSQGLNGKLAFAISASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVN 77
PP Q + G L A+ ++ LGS Q GYN GV NAPQK+I + + R +G +
Sbjct: 13 GEPPRQRVTGTLVLAVFSAVLGS-LQFGYNIGVINAPQKVIEQSYNETWLGRQGPEGPGS 71
Query: 78 PVIEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFS 137
I +T ++A++V+IF GG+I G +++ GRK +L NN VL L G +
Sbjct: 72 --IPPGTLTTLWALSVAIFSVGGMISSFLIGIISQWLGRKRAMLFNNALAVLGGTLMGLA 129
Query: 138 KAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQI 197
KA +SYEM+ILGRF IG SGL +GL PMY+ EI+P HLRGA+GT+ QL I I+I+Q+
Sbjct: 130 KAAASYEMLILGRFFIGAYSGLTSGLVPMYVGEIAPTHLRGALGTLNQLAIVTGILIAQV 189
Query: 198 LGLGGLLGTADGWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQRALSWLRG 257
LGL +LGTA WPLLL T++P + QM+ LP CPESP+Y+ + + E A+++L L G
Sbjct: 190 LGLESMLGTATLWPLLLGITVLPALLQMVLLPLCPESPRYLYIIRNLEGPARKSLKRLTG 249
Query: 258 TIEVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYF 317
+V + + E++ E ++ +SL ++ + R PL I++ + ++QQLSGINAV Y+
Sbjct: 250 WADVSEVLAELKEEKRKLERERPLSLLQLLGSHTHRQPLVIAIVLQLSQQLSGINAVFYY 309
Query: 318 STKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLL 377
ST IF A + A +AT+G G +N V TLVS+ LVE +GR+TL L+G G+ +L+
Sbjct: 310 STSIFESAGVEKPA--YATIGAGVVNTVFTLVSVFLVERAGRRTLHLLGLAGMCGCAILM 367
Query: 378 TIVMQFVE-IFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSIN 436
T+ + +E + MS I+ + FV FF +GPG IPWF+V+ELFSQ RP A ++A N
Sbjct: 368 TVALLLLERVPAMSYVSIVAIFGFVAFFEIGPGPIPWFIVAELFSQGPRPAAMAVAGFSN 427
Query: 437 WTANFIVGLGFLPIESIIHGYVFTIFAVLQAMFVLFIYKKVPETKNKTQEEIAAMFRQ 494
WT NFI+G+GF + + YVF +FAVL F +F + KVPET+ +T ++I+A+F +
Sbjct: 428 WTCNFIIGMGFQYVADAMGPYVFLLFAVLLLGFFIFTFLKVPETRGRTFDQISAVFHR 485
|
Insulin-regulated facilitative glucose transporter. Bos taurus (taxid: 9913) |
| >sp|P58352|GTR3_BOVIN Solute carrier family 2, facilitated glucose transporter member 3 OS=Bos taurus GN=SLC2A3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 374 bits (961), Expect = e-103, Method: Compositional matrix adjust.
Identities = 204/466 (43%), Positives = 293/466 (62%), Gaps = 10/466 (2%)
Query: 29 LAFAISASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMI 88
L FAIS + +GS FQ GYNTGV NAP+ +I +++ L+ RS P +T +
Sbjct: 10 LIFAISVATIGS-FQFGYNTGVINAPEAIIKDFLNYTLEERS------EPPPSSVLLTSL 62
Query: 89 FAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIIL 148
++++V+IF GG+IG + G RFGR +LI N+ + L GF K S EM+IL
Sbjct: 63 WSLSVAIFSVGGMIGSFSVGLFVNRFGRGNSMLIVNLLAIAGGCLMGFCKIAESVEMLIL 122
Query: 149 GRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLLGTAD 208
GR +IG+ GL G PMY+ EISP LRGA GT+ QL I I I+++QI GL +LGT D
Sbjct: 123 GRLIIGLFCGLCTGFVPMYIGEISPTALRGAFGTLNQLGIVIGILVAQIFGLKVILGTED 182
Query: 209 GWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDEMDEM 268
WPLLL FT++P I Q LPFCPESP+++L+++ +E +A+ L L GT +V ++ EM
Sbjct: 183 LWPLLLGFTILPAIIQCAALPFCPESPRFLLINRKEEEKAKEILQRLWGTEDVAQDIQEM 242
Query: 269 RAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTMAQLS 328
+ E + +V++ E+F R P+ IS+ + ++QQLSGINAV Y+ST IF A +
Sbjct: 243 KDESMRMSQEKQVTVLELFRAPNYRQPIIISIMLQLSQQLSGINAVFYYSTGIFKDAGVQ 302
Query: 329 DTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFV 388
+ +AT+G G +N + T+VS+ LVE +GR+TL LIG G+ ++L+TI + + +
Sbjct: 303 EPV--YATIGAGVVNTIFTVVSVFLVERAGRRTLHLIGLGGMAFCSILMTISLLLKDNYS 360
Query: 389 -MSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGF 447
MS CI +++FV FF +GPG IPWF+V+ELF Q RP A ++A NWT+NF+VGL F
Sbjct: 361 WMSFICIGAILVFVAFFEIGPGPIPWFIVAELFGQGPRPAAMAVAGCSNWTSNFLVGLLF 420
Query: 448 LPIESIIHGYVFTIFAVLQAMFVLFIYKKVPETKNKTQEEIAAMFR 493
+ YVF +F V +F +F + KVPET+ +T EEI F
Sbjct: 421 PSAAFYLGAYVFIVFTVFLVIFWVFTFFKVPETRGRTFEEITRAFE 466
|
Facilitative glucose transporter. Probably a neuronal glucose transporter. Bos taurus (taxid: 9913) |
| >sp|P47843|GTR3_SHEEP Solute carrier family 2, facilitated glucose transporter member 3 OS=Ovis aries GN=SLC2A3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 372 bits (956), Expect = e-102, Method: Compositional matrix adjust.
Identities = 204/466 (43%), Positives = 297/466 (63%), Gaps = 10/466 (2%)
Query: 29 LAFAISASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMI 88
L FAIS + +GS FQ GYNTGV NAP+ +I +++ L+ RS + + V+ +T +
Sbjct: 10 LIFAISIATIGS-FQFGYNTGVINAPEAIIKDFLNYTLEERS--ETPPSSVL----LTSL 62
Query: 89 FAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIIL 148
++++V+IF GG+IG + G RFGR+ +LI N+ + L GF K S EM+IL
Sbjct: 63 WSLSVAIFSVGGMIGSFSVGLFVNRFGRRNSMLIVNLLAIAGGCLMGFCKIAESVEMLIL 122
Query: 149 GRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLLGTAD 208
GR +IG+ GL G PMY+ EISP LRGA GT+ QL I I I+++QI GL +LGT D
Sbjct: 123 GRLIIGLFCGLCTGFVPMYIGEISPTALRGAFGTLNQLGIVIGILVAQIFGLKVILGTED 182
Query: 209 GWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDEMDEM 268
WPLLL FT++P I Q LPFCPESP+++L+++ +E +A+ L L GT +V ++ EM
Sbjct: 183 LWPLLLGFTILPAIIQCAALPFCPESPRFLLINRKEEEKAKEILQRLWGTEDVAQDIQEM 242
Query: 269 RAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTMAQLS 328
+ E + +V++ E+F R P+ IS+ + ++QQLSGINAV Y+ST IF A +
Sbjct: 243 KDESMRMSQEKQVTVLELFRAPNYRQPIIISIMLQLSQQLSGINAVFYYSTGIFKDAGVQ 302
Query: 329 DTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFV 388
+ +AT+G G +N + T+VS+ LVE +GR+TL LIG G+ ++L+TI + + +
Sbjct: 303 EPV--YATIGAGVVNTIFTVVSVFLVERAGRRTLHLIGLGGMAFCSILMTISLLLKDNYS 360
Query: 389 -MSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGF 447
MS CI +++FV FF +GPG IPWF+V+ELF Q RP A ++A NWT+NF+VGL F
Sbjct: 361 WMSFICIGAILVFVAFFEIGPGPIPWFIVAELFGQGPRPAAMAVAGCSNWTSNFLVGLLF 420
Query: 448 LPIESIIHGYVFTIFAVLQAMFVLFIYKKVPETKNKTQEEIAAMFR 493
+ YVF +F V +F +F + KVPET+ +T EEI F
Sbjct: 421 PSATFYLGAYVFIVFTVFLVIFWVFTFFKVPETRGRTFEEITRAFE 466
|
Facilitative glucose transporter. Probably a neuronal glucose transporter. Ovis aries (taxid: 9940) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 498 | ||||||
| 380014269 | 501 | PREDICTED: solute carrier family 2, faci | 0.941 | 0.936 | 0.695 | 0.0 | |
| 291461579 | 504 | sugar transporter 10 [Nilaparvata lugens | 0.987 | 0.976 | 0.671 | 0.0 | |
| 242011119 | 469 | sugar transporter, putative [Pediculus h | 0.939 | 0.997 | 0.661 | 0.0 | |
| 350418599 | 505 | PREDICTED: solute carrier family 2, faci | 0.983 | 0.970 | 0.669 | 0.0 | |
| 66547465 | 501 | PREDICTED: solute carrier family 2, faci | 0.979 | 0.974 | 0.669 | 0.0 | |
| 340722605 | 505 | PREDICTED: solute carrier family 2, faci | 0.965 | 0.952 | 0.676 | 0.0 | |
| 383849717 | 533 | PREDICTED: solute carrier family 2, faci | 0.943 | 0.881 | 0.693 | 0.0 | |
| 322786500 | 615 | hypothetical protein SINV_12701 [Solenop | 0.943 | 0.764 | 0.670 | 0.0 | |
| 193659702 | 491 | PREDICTED: solute carrier family 2, faci | 0.983 | 0.997 | 0.641 | 1e-180 | |
| 307186871 | 476 | Solute carrier family 2, facilitated glu | 0.943 | 0.987 | 0.656 | 1e-176 |
| >gi|380014269|ref|XP_003691162.1| PREDICTED: solute carrier family 2, facilitated glucose transporter member 1-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/476 (69%), Positives = 402/476 (84%), Gaps = 7/476 (1%)
Query: 24 GLNGKLAFAISASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQS 83
GLNG+LAFAI+A+ALGSSFQHGYNTGV NAPQ+LI WI D+ NR+ V +QS
Sbjct: 32 GLNGRLAFAIAAAALGSSFQHGYNTGVVNAPQQLIENWISDLKTNRT------GQVTKQS 85
Query: 84 QVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSY 143
+VTMI+++AVSIFC GG+IGG+ G +A+RFGRKGGLLINN+ VVL + +G +K SY
Sbjct: 86 EVTMIWSIAVSIFCVGGMIGGSLVGSIADRFGRKGGLLINNILVVLTVIFEGCAKTAKSY 145
Query: 144 EMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGL 203
EMII+GRFLIGIN+GLNAGLAPMYL+EISP+HLRGAVGTVYQLVIT+SI++SQILGL +
Sbjct: 146 EMIIIGRFLIGINAGLNAGLAPMYLSEISPIHLRGAVGTVYQLVITMSILVSQILGLEQI 205
Query: 204 LGTADGWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHD 263
LGTA+ WPLLL T+VP I+Q+I LPFCPESPKY+L++KG+++EAQRAL+WLRGTIEVHD
Sbjct: 206 LGTAEQWPLLLCLTIVPAIFQVIALPFCPESPKYLLVTKGKDMEAQRALAWLRGTIEVHD 265
Query: 264 EMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFT 323
EM+EMR EYES+KL+PKV+L+E+F N+ LRIPL I++ VM AQQLSGINAV++FSTKIF
Sbjct: 266 EMEEMRTEYESVKLVPKVTLKELFVNSTLRIPLIIALMVMFAQQLSGINAVMFFSTKIFM 325
Query: 324 MAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQF 383
MAQL +AAQ ATLG+G MNV+MT +SL+LVE +GRKTL+LIGF G+FV T LL I + F
Sbjct: 326 MAQLDKSAAQNATLGVGAMNVLMTFISLILVERAGRKTLMLIGFSGMFVDTALLAICLAF 385
Query: 384 VEI-FVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFI 442
E + F I+LVIMFVV FA GPGSIPWFLVSELF+QSARP ATS+A+++NWTANFI
Sbjct: 386 AETSRAAAYFSIVLVIMFVVLFATGPGSIPWFLVSELFNQSARPAATSVAIAVNWTANFI 445
Query: 443 VGLGFLPIESIIHGYVFTIFAVLQAMFVLFIYKKVPETKNKTQEEIAAMFRQISYQ 498
V +GFLP++ + YVF IFA LQA FV FIYKKVPETKNKT EEI++MFRQISYQ
Sbjct: 446 VSIGFLPLQEALGAYVFIIFAALQAFFVFFIYKKVPETKNKTMEEISSMFRQISYQ 501
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|291461579|dbj|BAI83424.1| sugar transporter 10 [Nilaparvata lugens] | Back alignment and taxonomy information |
|---|
Score = 666 bits (1718), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/496 (67%), Positives = 413/496 (83%), Gaps = 4/496 (0%)
Query: 3 EKEAENGSKPASPSGNRPPSQGLNGKLAFAISASALGSSFQHGYNTGVFNAPQKLISEWI 62
+ E +K SG ++GLN +LAFAI+A+A+GS+FQHGYN GV NAPQKLI EWI
Sbjct: 11 HQTKEELTKQNGVSGPDHATKGLNPRLAFAIAAAAVGSAFQHGYNLGVVNAPQKLIEEWI 70
Query: 63 VDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLI 122
+ V+KN++ D + Q++VTMIF++AVSI+C GG++GGA TG VAE++GRKGGLL
Sbjct: 71 LGVIKNQT--DASPPSDANQTKVTMIFSIAVSIYCVGGMLGGAITGLVAEKYGRKGGLLF 128
Query: 123 NNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGT 182
NN+F+V+AA L GFSKA +SY MII+GRFL+GINSGLNAGL PMYL+EI+PV LRGAVGT
Sbjct: 129 NNIFIVIAAALLGFSKAMNSYYMIIVGRFLLGINSGLNAGLTPMYLSEIAPVQLRGAVGT 188
Query: 183 VYQLVITISIVISQILGLGGLLGTADGWPLLLAFTLVPGIYQMITLPFCPESPKYILLSK 242
VYQLV+TISI+ISQILGL +LGTA+ WP+LL+ T+VP I+Q+ITLP CPESPKY+L++K
Sbjct: 189 VYQLVLTISILISQILGLNFILGTAELWPILLSLTIVPTIFQLITLPMCPESPKYLLITK 248
Query: 243 GQELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTV 302
GQE+E+QRA++W RGTIEVHDEMDEMR EYES+KL+PKV+LREM N+ LRIPLFIS+ V
Sbjct: 249 GQEIESQRAVTWFRGTIEVHDEMDEMRREYESMKLVPKVTLREMLVNSALRIPLFISLVV 308
Query: 303 MVAQQLSGINAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTL 362
M+AQQLSGINAVI+FST IF +A L D+ AQ ATL MG MNV+MT++SLVLVE GRK L
Sbjct: 309 MIAQQLSGINAVIFFSTSIFQLASLGDS-AQLATLAMGAMNVLMTVISLVLVERVGRKVL 367
Query: 363 LLIGFMGVFVVTVLLTIVMQFVEIFV-MSIFCIILVIMFVVFFAVGPGSIPWFLVSELFS 421
LL+GF G+FV+T LL + + +V+ + CI+LVI FVV FAVGPGSIPWFLVSELF+
Sbjct: 368 LLVGFSGMFVITCLLAVALAYVKSNKWLPYVCILLVIAFVVMFAVGPGSIPWFLVSELFN 427
Query: 422 QSARPLATSLAVSINWTANFIVGLGFLPIESIIHGYVFTIFAVLQAMFVLFIYKKVPETK 481
QSA PLATSLAV NWTANF VGLGFLP++ ++ G+VF IFA+LQA+F++FIYKKVPETK
Sbjct: 428 QSALPLATSLAVGTNWTANFFVGLGFLPLQQLLGGHVFFIFAILQALFIVFIYKKVPETK 487
Query: 482 NKTQEEIAAMFRQISY 497
NKT EEI+ MF+QISY
Sbjct: 488 NKTLEEISTMFKQISY 503
|
Source: Nilaparvata lugens Species: Nilaparvata lugens Genus: Nilaparvata Family: Delphacidae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242011119|ref|XP_002426303.1| sugar transporter, putative [Pediculus humanus corporis] gi|212510371|gb|EEB13565.1| sugar transporter, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 661 bits (1706), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/475 (66%), Positives = 400/475 (84%), Gaps = 7/475 (1%)
Query: 25 LNGKLAFAISASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQ 84
+N +LAFAI A+AL SSFQHGYN GV NAP++LI EWI D+ NR+ + ++EQSQ
Sbjct: 1 MNKRLAFAIVAAALWSSFQHGYNIGVVNAPERLIEEWIYDLESNRT------DTIVEQSQ 54
Query: 85 VTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYE 144
VT+I+++AVSIFCAGG+IG +T YVAE+FGRKGGLL+NN+FV++A + QG +K+ +SYE
Sbjct: 55 VTIIWSIAVSIFCAGGMIGACSTSYVAEKFGRKGGLLLNNIFVLIATVCQGCAKSSNSYE 114
Query: 145 MIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLL 204
++ILGRF IGINSGLNAGLAP+YL EISPV LRGAVGTVYQL ITISI+ISQILG +L
Sbjct: 115 LLILGRFAIGINSGLNAGLAPLYLTEISPVRLRGAVGTVYQLGITISILISQILGSESVL 174
Query: 205 GTADGWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDE 264
GT + WP+LLA T+VPGI Q+I+LPFCPE+PKY+L++KG+ELEAQ+AL WLR + EVHDE
Sbjct: 175 GTEELWPVLLALTIVPGILQLISLPFCPETPKYLLITKGKELEAQKALLWLRDSTEVHDE 234
Query: 265 MDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTM 324
MDEMR+E+E +KL+P V+ REMFTN LRIPL I++ VM+ QQLSGINAV++FSTKIF M
Sbjct: 235 MDEMRSEHEKMKLVPTVTFREMFTNEALRIPLIIAIVVMIGQQLSGINAVMFFSTKIFKM 294
Query: 325 AQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFV 384
+ L+D +AQ+AT+ MGT NV MT+VSLVLVE +GRKTLLLIGF+G+F + ++LTI + F
Sbjct: 295 SNLTDESAQYATIAMGTCNVAMTVVSLVLVEKAGRKTLLLIGFVGMFFIALILTICLAFA 354
Query: 385 EI-FVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIV 443
E V+S CI+LV++FV+ FAVGPGSIPWFLV+ELF+Q ARP ATS+AV++NWTANF+V
Sbjct: 355 EKSIVVSYLCILLVLLFVITFAVGPGSIPWFLVTELFNQGARPAATSIAVAVNWTANFLV 414
Query: 444 GLGFLPIESIIHGYVFTIFAVLQAMFVLFIYKKVPETKNKTQEEIAAMFRQISYQ 498
GLGFLP++ +I YVF +FA+ F+LF++KK+PETKNK EEI+AMFRQISYQ
Sbjct: 415 GLGFLPLQELIREYVFIVFAIFLIFFILFVWKKLPETKNKPIEEISAMFRQISYQ 469
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350418599|ref|XP_003491910.1| PREDICTED: solute carrier family 2, facilitated glucose transporter member 1-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/499 (66%), Positives = 406/499 (81%), Gaps = 9/499 (1%)
Query: 3 EKEAENGS--KPASPSGNRPPSQGLNGKLAFAISASALGSSFQHGYNTGVFNAPQKLISE 60
EK+A S PA GLNG+LAFAI+A+ALGSSFQHGYNTGV NAPQ+LI
Sbjct: 13 EKQATTPSPLTPAPKPTTEDKRWGLNGRLAFAIAAAALGSSFQHGYNTGVVNAPQQLIEN 72
Query: 61 WIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGL 120
WI D+ NR+ V +QS+VTMI+A+AVSIFC GG+IGG+ G +A+RFGRKGGL
Sbjct: 73 WISDLKMNRT------GQVTKQSEVTMIWAIAVSIFCVGGMIGGSLVGSIADRFGRKGGL 126
Query: 121 LINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAV 180
L+NN+ V+L + +G +KA SYEMII+GRFLIGIN+GLNAGLAPMYL+EISP+HLRGAV
Sbjct: 127 LLNNILVLLTVIFEGCAKAAKSYEMIIIGRFLIGINAGLNAGLAPMYLSEISPIHLRGAV 186
Query: 181 GTVYQLVITISIVISQILGLGGLLGTADGWPLLLAFTLVPGIYQMITLPFCPESPKYILL 240
GTVYQLVIT+SI++SQILGL +LGT D WPLLL T+VP I+Q++TLP CPESPKY+LL
Sbjct: 187 GTVYQLVITMSILVSQILGLEQILGTDDQWPLLLCLTIVPAIFQVVTLPLCPESPKYLLL 246
Query: 241 SKGQELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISM 300
SKG+++EAQRAL+WLRGTIEVHDEM+EMR EYES+KL+PKV+L+E+F N LRIPL I++
Sbjct: 247 SKGKDMEAQRALAWLRGTIEVHDEMEEMRTEYESVKLVPKVTLKELFVNPSLRIPLMIAI 306
Query: 301 TVMVAQQLSGINAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRK 360
VM AQQLSGINAV++FSTKIFTMAQL TAAQ AT+ +G MNVVMT VSL+LVE +GRK
Sbjct: 307 MVMFAQQLSGINAVMFFSTKIFTMAQLDKTAAQNATMAVGAMNVVMTFVSLILVEKAGRK 366
Query: 361 TLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIF-CIILVIMFVVFFAVGPGSIPWFLVSEL 419
TLLL GF G+F+ T LL I + F + + + I+LV+ FV+ FA GPGSIPWFLVSEL
Sbjct: 367 TLLLAGFSGMFIDTALLAICLAFADTSRAAAYSSIVLVMTFVILFATGPGSIPWFLVSEL 426
Query: 420 FSQSARPLATSLAVSINWTANFIVGLGFLPIESIIHGYVFTIFAVLQAMFVLFIYKKVPE 479
F+QSARP ATS+A+++NWTANFIV +GFLP++ + YVF IFA LQA FV FIYKKVPE
Sbjct: 427 FNQSARPAATSVAIAVNWTANFIVSIGFLPLQEALGAYVFIIFAALQAFFVFFIYKKVPE 486
Query: 480 TKNKTQEEIAAMFRQISYQ 498
TKNKT EEI++MFRQISYQ
Sbjct: 487 TKNKTMEEISSMFRQISYQ 505
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|66547465|ref|XP_392938.2| PREDICTED: solute carrier family 2, facilitated glucose transporter member 1-like isoform 1 [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 657 bits (1695), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/496 (66%), Positives = 409/496 (82%), Gaps = 8/496 (1%)
Query: 4 KEAENGSKPASPSGNRPPSQGLNGKLAFAISASALGSSFQHGYNTGVFNAPQKLISEWIV 63
+E S P++P GLNG+LAFAI+A+ALGSSFQHGYNTGV NAPQ+LI +WI
Sbjct: 13 QEQATTSTPSNPV-QEDKKLGLNGRLAFAIAAAALGSSFQHGYNTGVVNAPQQLIEDWIS 71
Query: 64 DVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLIN 123
++ NR+ V +QS+VTMI+++AVSIFC GG+IGG+ G +A+RFGRKGGLLIN
Sbjct: 72 NLKMNRT------GQVTKQSEVTMIWSIAVSIFCVGGMIGGSLVGSIADRFGRKGGLLIN 125
Query: 124 NVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTV 183
N+ V+L + +G +K SYEMII+GRFLIGIN+GLNAGLAPMYL+EISP+HLRGAVGTV
Sbjct: 126 NILVLLTVIFEGCAKTAKSYEMIIIGRFLIGINAGLNAGLAPMYLSEISPIHLRGAVGTV 185
Query: 184 YQLVITISIVISQILGLGGLLGTADGWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKG 243
YQLVIT+SI++SQILGL +LGTA+ WPLLL T+VP I+Q+I LPFCPESPKY+L+++G
Sbjct: 186 YQLVITMSILVSQILGLEQILGTAEQWPLLLCLTIVPAIFQVIALPFCPESPKYLLVTRG 245
Query: 244 QELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVM 303
+++EAQRAL+WLRGTIEVHDEM+EMR EYES+KL+PKV+L+E+F N+ LRIPL I++ VM
Sbjct: 246 KDMEAQRALAWLRGTIEVHDEMEEMRTEYESVKLVPKVTLKELFVNSTLRIPLIIALMVM 305
Query: 304 VAQQLSGINAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLL 363
AQQLSGINAV++FSTKIF MAQL AAQ ATLG+G MNV+MT +SL+LVE +GRKTL+
Sbjct: 306 FAQQLSGINAVMFFSTKIFMMAQLDKNAAQNATLGVGAMNVLMTFISLILVERAGRKTLM 365
Query: 364 LIGFMGVFVVTVLLTIVMQFVEI-FVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQ 422
LIGF G+FV T LL I + F E + F I+LVIMFVV FA GPGSIPWFLVSELF+Q
Sbjct: 366 LIGFSGMFVDTALLAICLAFAETSRAAAYFSIVLVIMFVVLFATGPGSIPWFLVSELFNQ 425
Query: 423 SARPLATSLAVSINWTANFIVGLGFLPIESIIHGYVFTIFAVLQAMFVLFIYKKVPETKN 482
SARP ATS+A+++NWTANFIV +GFLP++ + YVF IFA LQA FV FIYKKVPETKN
Sbjct: 426 SARPAATSVAIAVNWTANFIVSIGFLPLQEALGAYVFIIFAALQAFFVFFIYKKVPETKN 485
Query: 483 KTQEEIAAMFRQISYQ 498
KT EEI++MFRQISYQ
Sbjct: 486 KTMEEISSMFRQISYQ 501
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340722605|ref|XP_003399694.1| PREDICTED: solute carrier family 2, facilitated glucose transporter member 1-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 655 bits (1691), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/488 (67%), Positives = 401/488 (82%), Gaps = 7/488 (1%)
Query: 12 PASPSGNRPPSQGLNGKLAFAISASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSI 71
PA GLNG+LAFAI+A+ALGSSFQHGYNTGV NAPQ+LI WI D+ NR+
Sbjct: 24 PAPKPTTEDKRWGLNGRLAFAIAAAALGSSFQHGYNTGVVNAPQQLIENWISDLKMNRT- 82
Query: 72 ADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAA 131
V +QS+VTMI+A+AVSIFC GG+IGG+ G +A+RFGRKGGLL+NN+ V+L
Sbjct: 83 -----GQVTKQSEVTMIWAIAVSIFCVGGMIGGSLVGSIADRFGRKGGLLLNNILVLLTV 137
Query: 132 LLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITIS 191
+ +G +KA SYEMII+GRFLIGIN+GLNAGLAPMYL+EISP+HLRGAVGTVYQLVIT+S
Sbjct: 138 IFEGCAKAAKSYEMIIIGRFLIGINAGLNAGLAPMYLSEISPIHLRGAVGTVYQLVITMS 197
Query: 192 IVISQILGLGGLLGTADGWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQRA 251
I++SQILGL +LGT D WPLLL T+VP I+Q++TLP CPESPKY+LLSKG+++EAQRA
Sbjct: 198 ILVSQILGLEQILGTDDQWPLLLCLTIVPAIFQVVTLPLCPESPKYLLLSKGKDMEAQRA 257
Query: 252 LSWLRGTIEVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGI 311
L+WLRGTIEVHDEM+EMR EYES+KL+PKV+L+E+F N LRIPL I++ VM AQQLSGI
Sbjct: 258 LAWLRGTIEVHDEMEEMRTEYESVKLVPKVTLKELFVNPSLRIPLMIAIMVMFAQQLSGI 317
Query: 312 NAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVF 371
NAV++FSTKIFTMAQL TAAQ AT+ +G MNVVMT VSL+LVE +GRKTLLL GF G+F
Sbjct: 318 NAVMFFSTKIFTMAQLDKTAAQNATMAVGAMNVVMTFVSLILVEKAGRKTLLLAGFSGMF 377
Query: 372 VVTVLLTIVMQFVEIFVMSIF-CIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATS 430
+ T LL I + F + + + I+LV+ FV+ FA GPGSIPWFLVSELF+QSARP ATS
Sbjct: 378 IDTALLAICLAFADTSRAAAYSSIVLVMTFVILFATGPGSIPWFLVSELFNQSARPAATS 437
Query: 431 LAVSINWTANFIVGLGFLPIESIIHGYVFTIFAVLQAMFVLFIYKKVPETKNKTQEEIAA 490
+A+++NWTANFIV +GFLP++ + YVF IFA LQA FV FIYKKVPETKNKT EEI++
Sbjct: 438 VAIAVNWTANFIVSIGFLPLQEALGAYVFIIFAALQAFFVFFIYKKVPETKNKTMEEISS 497
Query: 491 MFRQISYQ 498
MFRQISYQ
Sbjct: 498 MFRQISYQ 505
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383849717|ref|XP_003700484.1| PREDICTED: solute carrier family 2, facilitated glucose transporter member 1-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 648 bits (1671), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/477 (69%), Positives = 403/477 (84%), Gaps = 7/477 (1%)
Query: 23 QGLNGKLAFAISASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQ 82
+GLNG+LAFAI A+ALGSSFQHGYNTGV NAPQ+LI +WI ++ NR T P +Q
Sbjct: 63 KGLNGRLAFAICAAALGSSFQHGYNTGVVNAPQQLIEDWISNLKMNR-----TGVPT-KQ 116
Query: 83 SQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSS 142
S+VTMI+++AVSIFC GG+IGG+ G VA+RFGRKGGLL+NN+ V+L + +G +K S
Sbjct: 117 SEVTMIWSIAVSIFCVGGMIGGSLVGSVADRFGRKGGLLLNNILVLLTVIFEGCAKTAKS 176
Query: 143 YEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGG 202
YEMII+GRF+IGINSGLNAGLAPMYLAEISP+HLRGAVGTVYQLVIT+SI++SQILGL
Sbjct: 177 YEMIIIGRFIIGINSGLNAGLAPMYLAEISPIHLRGAVGTVYQLVITMSILVSQILGLEQ 236
Query: 203 LLGTADGWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVH 262
+LGTAD WPLLL T+VP I+Q+ITLP CPESPKY+LLSKG+++EAQRALSWLRGTIEVH
Sbjct: 237 VLGTADQWPLLLCLTIVPAIFQIITLPLCPESPKYLLLSKGKDMEAQRALSWLRGTIEVH 296
Query: 263 DEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIF 322
DEM+EMR EYES+KL+PKV+L+E+F N+ LRIPL I++ +M AQQLSGINAV++FSTKIF
Sbjct: 297 DEMEEMRTEYESVKLVPKVTLKELFVNSALRIPLMIAIMIMFAQQLSGINAVMFFSTKIF 356
Query: 323 TMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQ 382
MAQL AAQ AT+G+G MNV+MT +SL+LVE +GRKTLLLIGF G+F+ T LL + +
Sbjct: 357 MMAQLDKNAAQNATMGVGAMNVLMTFISLILVERAGRKTLLLIGFGGMFIDTALLAVCLV 416
Query: 383 FVEI-FVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANF 441
F + + F I+LVIMFVV FA GPGSIPWFLVSELF+QSARP ATS+A++INWTANF
Sbjct: 417 FADTSSTAAYFSIVLVIMFVVLFATGPGSIPWFLVSELFNQSARPAATSVAIAINWTANF 476
Query: 442 IVGLGFLPIESIIHGYVFTIFAVLQAMFVLFIYKKVPETKNKTQEEIAAMFRQISYQ 498
IV +GFLP++ + YVF +FAV+QA FV FIYKKVPETKNKT EEI++MFRQISYQ
Sbjct: 477 IVSIGFLPLQEALGAYVFILFAVIQAFFVFFIYKKVPETKNKTMEEISSMFRQISYQ 533
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|322786500|gb|EFZ12945.1| hypothetical protein SINV_12701 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
Score = 642 bits (1655), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/497 (67%), Positives = 404/497 (81%), Gaps = 27/497 (5%)
Query: 23 QGLNGKLAFAISASALGSSFQHGYNTGVFNAPQK--------------------LISEWI 62
QGLNG+LAFAI+A+ALGSSFQHGYNTGV NAPQ+ LI +WI
Sbjct: 125 QGLNGRLAFAIAAAALGSSFQHGYNTGVVNAPQQVRIAFGKSLRKNVCMCIIIHLIEDWI 184
Query: 63 VDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLI 122
D+ NR T P +Q++VT+I+++AVSIFC GG+IGGA G+VA+RFGRKGGLL+
Sbjct: 185 KDLKTNR-----TGVPT-QQTEVTLIWSLAVSIFCVGGMIGGAMVGWVADRFGRKGGLLL 238
Query: 123 NNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGT 182
NN+ V+L + +G +KA SYEMII+GRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGT
Sbjct: 239 NNILVILTVIFEGSAKAARSYEMIIVGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGT 298
Query: 183 VYQLVITISIVISQILGLGGLLGTADGWPLLLAFTLVPGIYQMITLPFCPESPKYILLSK 242
VYQLVITISI++SQILGL +LGT + WPLLL T+VP I+QM TLP CPESPKY+LL++
Sbjct: 299 VYQLVITISILVSQILGLEQILGTNEQWPLLLCLTIVPAIFQMCTLPLCPESPKYLLLNR 358
Query: 243 GQELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTV 302
G++++AQR LSWLRGTIEVHDEM+EMR EYES+KL+PKV++RE+F N LRIPLFIS+ +
Sbjct: 359 GKDMDAQRGLSWLRGTIEVHDEMEEMRTEYESVKLVPKVTVRELFVNPALRIPLFISIMI 418
Query: 303 MVAQQLSGINAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTL 362
M AQQLSGINAV++FSTKIF MAQL AAQ AT+G+G MNV MT+VSLVLVE +GRKTL
Sbjct: 419 MFAQQLSGINAVMFFSTKIFRMAQLDKHAAQSATMGVGAMNVFMTVVSLVLVEKAGRKTL 478
Query: 363 LLIGFMGVFVVTVLLTIVMQFVEIFVMSIF-CIILVIMFVVFFAVGPGSIPWFLVSELFS 421
LL+GF G+FV TVLL+I + F + + + I+LVIMFVV FA GPGSIPWFLVSELF+
Sbjct: 479 LLVGFFGMFVDTVLLSICLAFADSSRAAAYLSIVLVIMFVVMFATGPGSIPWFLVSELFN 538
Query: 422 QSARPLATSLAVSINWTANFIVGLGFLPIESIIHGYVFTIFAVLQAMFVLFIYKKVPETK 481
QSARP ATS+A+ +NWTANFIV +GFLP++ ++ YVF IFA+LQ F +FIYKKVPETK
Sbjct: 539 QSARPPATSIAIFVNWTANFIVSIGFLPLQEVLGAYVFIIFAILQLFFTIFIYKKVPETK 598
Query: 482 NKTQEEIAAMFRQISYQ 498
NKT EEI++MFRQISYQ
Sbjct: 599 NKTMEEISSMFRQISYQ 615
|
Source: Solenopsis invicta Species: Solenopsis invicta Genus: Solenopsis Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|193659702|ref|XP_001950963.1| PREDICTED: solute carrier family 2, facilitated glucose transporter member 1-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 637 bits (1643), Expect = e-180, Method: Compositional matrix adjust.
Identities = 320/499 (64%), Positives = 408/499 (81%), Gaps = 9/499 (1%)
Query: 1 MTEKEAENGSKPASPSGNRPPSQGLNGKLAFAISASALGSSFQHGYNTGVFNAPQKLISE 60
MTEK+ ++ +P+ P +Q LNG+L FAI ASA GS+FQHGYNTGV NAPQ LI +
Sbjct: 1 MTEKQMVKDAEKQAPT---PQNQSLNGRLLFAIIASAFGSAFQHGYNTGVVNAPQALIEK 57
Query: 61 WIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGL 120
WI V+ R+ T +Q+QVT+I+AVAVSIFC GG++GG +TG+VAE+FGRKGGL
Sbjct: 58 WISGVISGRNDGKPT-----DQTQVTLIWAVAVSIFCVGGMVGGLSTGFVAEKFGRKGGL 112
Query: 121 LINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAV 180
L++N V+L+A LQG SK +SSYE+II+GRF+IGINSGLNAGL PMYLAEISP++LRG+V
Sbjct: 113 LVSNALVILSAALQGVSKMYSSYELIIIGRFIIGINSGLNAGLTPMYLAEISPMNLRGSV 172
Query: 181 GTVYQLVITISIVISQILGLGGLLGTADGWPLLLAFTLVPGIYQMITLPFCPESPKYILL 240
GTVYQLV+TISI+ISQILGL +LGTA+ WP+LLA + P I+ TLPFCPESPKY L+
Sbjct: 173 GTVYQLVVTISILISQILGLDYILGTAELWPVLLALIIAPAIFMFATLPFCPESPKYTLI 232
Query: 241 SKGQELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISM 300
+K +++EA+R L WLRGTIEVHDEMDEMRAE E++K+IPKV+LREM +N L+ PL IS+
Sbjct: 233 NKKKDIEAERGLQWLRGTIEVHDEMDEMRAENEAMKVIPKVTLREMLSNPMLKTPLGISV 292
Query: 301 TVMVAQQLSGINAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRK 360
+M+ QQLSGINAV++FSTKIF MA +S+ A++ATLGMG++NV+MTL+SL LVE++GRK
Sbjct: 293 MIMLCQQLSGINAVMFFSTKIFNMAGMSNDGAKYATLGMGSLNVIMTLISLFLVELTGRK 352
Query: 361 TLLLIGFMGVFVVTVLLTIVMQFVEI-FVMSIFCIILVIMFVVFFAVGPGSIPWFLVSEL 419
TLL+IGF +FVVTV+LTI + FV + ++S ++LV+ FV+ FAVGPGSIPWFLVSEL
Sbjct: 353 TLLMIGFSSMFVVTVMLTIALMFVNVSSIVSGLAVVLVMAFVIAFAVGPGSIPWFLVSEL 412
Query: 420 FSQSARPLATSLAVSINWTANFIVGLGFLPIESIIHGYVFTIFAVLQAMFVLFIYKKVPE 479
F+ SARPLATS+AV +NWTANF+VGLGFLP++ ++ VF IF VL A+FVL++YKKVPE
Sbjct: 413 FNSSARPLATSIAVGVNWTANFVVGLGFLPLQEMLQSNVFLIFVVLLALFVLYVYKKVPE 472
Query: 480 TKNKTQEEIAAMFRQISYQ 498
TKNKT EEI FRQ SY+
Sbjct: 473 TKNKTLEEIQMGFRQESYK 491
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307186871|gb|EFN72280.1| Solute carrier family 2, facilitated glucose transporter member 1 [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 624 bits (1608), Expect = e-176, Method: Compositional matrix adjust.
Identities = 313/477 (65%), Positives = 384/477 (80%), Gaps = 7/477 (1%)
Query: 23 QGLNGKLAFAISASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQ 82
NG+LAFAI+A+ GSSFQHGYN+GV N PQ+LI +WI + NR+ T Q
Sbjct: 6 NSFNGRLAFAIAAAVFGSSFQHGYNSGVINEPQQLIEDWISQLKMNRTGVPPT------Q 59
Query: 83 SQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSS 142
S+VT+I++VAVSIFC GG+IGG+ G+VA+RFGRKGGLL+NN+ V+L + +G +KA SS
Sbjct: 60 SEVTLIWSVAVSIFCVGGMIGGSLVGWVADRFGRKGGLLLNNILVLLTVIFEGSAKAASS 119
Query: 143 YEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGG 202
YEMII GRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVY LV+ + V+SQILGL
Sbjct: 120 YEMIIFGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYHLVLASATVVSQILGLEQ 179
Query: 203 LLGTADGWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVH 262
+LGT D WPLLL T+VP I+QM TLPFCPESPKY+LL++ ++++AQ+ALSWLRGTIEVH
Sbjct: 180 VLGTTDQWPLLLCLTIVPAIFQMCTLPFCPESPKYLLLNRDKDMDAQKALSWLRGTIEVH 239
Query: 263 DEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIF 322
DEM+EMR EYES+KLIPKV++RE+F N LRIPLFIS+ +M AQQLSGINAV++FSTKIF
Sbjct: 240 DEMEEMRTEYESMKLIPKVTVRELFMNPALRIPLFISIMIMFAQQLSGINAVMFFSTKIF 299
Query: 323 TMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQ 382
TMAQL+ T AQ AT+G+ + + ++S VL+E +GRKTLLL+GF G+F+ T LLTI +
Sbjct: 300 TMAQLNMTVAQTATVGVTIIGTLTVIISTVLIEKAGRKTLLLVGFAGMFLDTALLTICLV 359
Query: 383 FVEIF-VMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANF 441
F E + F I+LV+MF+VFF GPGSIPWFLVSELF+QSARP ATS+AV +NW NF
Sbjct: 360 FAETSQTAAYFSIVLVVMFLVFFGTGPGSIPWFLVSELFNQSARPSATSIAVVVNWIMNF 419
Query: 442 IVGLGFLPIESIIHGYVFTIFAVLQAMFVLFIYKKVPETKNKTQEEIAAMFRQISYQ 498
IVG+GFLP+ + YVF IFAVLQ F LFIYKKVPETKNKT EEI+ MF+Q+S Q
Sbjct: 420 IVGIGFLPLHEALGAYVFIIFAVLQLFFALFIYKKVPETKNKTIEEISNMFKQMSCQ 476
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 498 | ||||||
| MGI|MGI:95755 | 492 | Slc2a1 "solute carrier family | 0.935 | 0.947 | 0.436 | 5.6e-100 | |
| UNIPROTKB|P27674 | 492 | SLC2A1 "Solute carrier family | 0.935 | 0.947 | 0.432 | 9.1e-100 | |
| RGD|3704 | 492 | Slc2a1 "solute carrier family | 0.935 | 0.947 | 0.430 | 1.2e-99 | |
| UNIPROTKB|P11166 | 492 | SLC2A1 "Solute carrier family | 0.935 | 0.947 | 0.428 | 3.9e-99 | |
| MGI|MGI:95758 | 509 | Slc2a4 "solute carrier family | 0.967 | 0.946 | 0.422 | 8.2e-99 | |
| UNIPROTKB|F1RF44 | 509 | SLC2A4 "Solute carrier family | 0.967 | 0.946 | 0.418 | 1.7e-98 | |
| RGD|2711 | 509 | Slc2a4 "solute carrier family | 0.967 | 0.946 | 0.418 | 1.7e-98 | |
| UNIPROTKB|F1PWN2 | 492 | SLC2A1 "Uncharacterized protei | 0.935 | 0.947 | 0.424 | 2.8e-98 | |
| UNIPROTKB|E2R689 | 492 | SLC2A1 "Uncharacterized protei | 0.935 | 0.947 | 0.424 | 3.5e-98 | |
| UNIPROTKB|F1Q292 | 510 | SLC2A4 "Solute carrier family | 0.967 | 0.945 | 0.418 | 4.5e-98 |
| MGI|MGI:95755 Slc2a1 "solute carrier family 2 (facilitated glucose transporter), member 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 992 (354.3 bits), Expect = 5.6e-100, P = 5.6e-100
Identities = 208/476 (43%), Positives = 297/476 (62%)
Query: 20 PPSQGLNGKLAFAISASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPV 79
P S+ + G+L A+ + LGS Q GYNTGV NAPQK+I E+ +R G P
Sbjct: 3 PSSKKVTGRLMLAVGGAVLGS-LQFGYNTGVINAPQKVIEEFYNQTWNHRY---G--EP- 55
Query: 80 IEQSQVTMIFAVAVSIFCXXXXXXXXXXXYVAERFGRKGGLLINNVFVVLAALLQGFSKA 139
I + +T +++++V+IF RFGR+ +L+ N+ +AA+L GFSK
Sbjct: 56 IPSTTLTTLWSLSVAIFSVGGMIGSFSVGLFVNRFGRRNSMLMMNLLAFVAAVLMGFSKL 115
Query: 140 FSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQIXX 199
S+EM+ILGRF+IG+ GL G PMY+ E+SP LRGA+GT++QL I + I+I+Q+
Sbjct: 116 GKSFEMLILGRFIIGVYCGLTTGFVPMYVGEVSPTALRGALGTLHQLGIVVGILIAQVFG 175
Query: 200 XXXXXXTADGWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQRALSWLRGTI 259
AD WPLLL+ +P + Q I LPFCPESP+++L+++ +E A+ L LRGT
Sbjct: 176 LDSIMGNADLWPLLLSVIFIPALLQCILLPFCPESPRFLLINRNEENRAKSVLKKLRGTA 235
Query: 260 EVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFST 319
+V ++ EM+ E + KV++ E+F + R P+ I++ + ++QQLSGINAV Y+ST
Sbjct: 236 DVTRDLQEMKEEGRQMMREKKVTILELFRSPAYRQPILIAVVLQLSQQLSGINAVFYYST 295
Query: 320 KIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTI 379
IF A + +AT+G G +N T+VSL +VE +GR+TL LIG G+ VL+TI
Sbjct: 296 SIFEKAGVQQPV--YATIGSGIVNTAFTVVSLFVVERAGRRTLHLIGLAGMAGCAVLMTI 353
Query: 380 VMQFVEIFV-MSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWT 438
+ +E MS I+ + FV FF VGPG IPWF+V+ELFSQ RP A ++A NWT
Sbjct: 354 ALALLERLPWMSYLSIVAIFGFVAFFEVGPGPIPWFIVAELFSQGPRPAAIAVAGFSNWT 413
Query: 439 ANFIVGLGFLPIESIIHGYVFTIFAVLQAMFVLFIYKKVPETKNKTQEEIAAMFRQ 494
+NFIVG+ F +E + YVF IF VL +F +F Y KVPETK +T +EIA+ FRQ
Sbjct: 414 SNFIVGMCFQYVEQLCGPYVFIIFTVLLVLFFIFTYFKVPETKGRTFDEIASGFRQ 469
|
|
| UNIPROTKB|P27674 SLC2A1 "Solute carrier family 2, facilitated glucose transporter member 1" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 990 (353.6 bits), Expect = 9.1e-100, P = 9.1e-100
Identities = 206/476 (43%), Positives = 297/476 (62%)
Query: 20 PPSQGLNGKLAFAISASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPV 79
P S+ L G+L A+ + LGS Q GYNTGV NAPQK+I E+ N++ P
Sbjct: 3 PTSKKLTGRLMLAVGGAVLGS-LQFGYNTGVINAPQKVIEEFY-----NQTWVQRYGEP- 55
Query: 80 IEQSQVTMIFAVAVSIFCXXXXXXXXXXXYVAERFGRKGGLLINNVFVVLAALLQGFSKA 139
I + +T +++++V+IF RFGR+ +L+ N+ ++A+L GFSK
Sbjct: 56 IPPATLTTLWSLSVAIFSVGGMIGSFSVGLFVNRFGRRNSMLMMNLLAFVSAVLMGFSKL 115
Query: 140 FSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQIXX 199
S+EM+ILGRF+IG+ GL G PMY+ E+SP LRGA+GT++QL I + I+I+Q+
Sbjct: 116 GKSFEMLILGRFIIGVYCGLTTGFVPMYVGEVSPTELRGALGTLHQLGIVVGILIAQVFG 175
Query: 200 XXXXXXTADGWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQRALSWLRGTI 259
+ WPLLL+ +P + Q I LPFCPESP+++L+++ +E A+ L LRGT
Sbjct: 176 LDSIMGNQELWPLLLSVIFIPALLQCILLPFCPESPRFLLINRNEENRAKSVLKKLRGTA 235
Query: 260 EVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFST 319
+V ++ EM+ E + KV++ E+F +A R P+ I++ + ++QQLSGINAV Y+ST
Sbjct: 236 DVTRDLQEMKEESRQMMREKKVTILELFRSAAYRQPILIAVVLQLSQQLSGINAVFYYST 295
Query: 320 KIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTI 379
IF A + +AT+G G +N T+VSL +VE +GR+TL LIG G+ VL+TI
Sbjct: 296 SIFEKAGVQQPV--YATIGSGIVNTAFTVVSLFVVERAGRRTLHLIGLAGMAGCAVLMTI 353
Query: 380 VMQFVEIFV-MSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWT 438
+ +E MS I+ + FV FF VGPG IPWF+V+ELFSQ RP A ++A NWT
Sbjct: 354 ALALLERLPWMSYLSIVAIFGFVAFFEVGPGPIPWFIVAELFSQGPRPAAIAVAGFSNWT 413
Query: 439 ANFIVGLGFLPIESIIHGYVFTIFAVLQAMFVLFIYKKVPETKNKTQEEIAAMFRQ 494
+NFIVG+ F +E + YVF IF VL +F +F Y KVPETK +T +EIA+ FRQ
Sbjct: 414 SNFIVGMCFQYVEQLCGPYVFIIFTVLLVLFFIFTYFKVPETKGRTFDEIASGFRQ 469
|
|
| RGD|3704 Slc2a1 "solute carrier family 2 (facilitated glucose transporter), member 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 989 (353.2 bits), Expect = 1.2e-99, P = 1.2e-99
Identities = 205/476 (43%), Positives = 295/476 (61%)
Query: 20 PPSQGLNGKLAFAISASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPV 79
P S+ + G+L A+ + LGS Q GYNTGV NAPQK+I E+ +R
Sbjct: 3 PSSKKVTGRLMLAVGGAVLGS-LQFGYNTGVINAPQKVIEEFYNQTWNHR------YGES 55
Query: 80 IEQSQVTMIFAVAVSIFCXXXXXXXXXXXYVAERFGRKGGLLINNVFVVLAALLQGFSKA 139
I + +T +++++V+IF RFGR+ +L+ N+ ++A+L GFSK
Sbjct: 56 IPSTTLTTLWSLSVAIFSVGGMIGSFSVGLFVNRFGRRNSMLMMNLLAFVSAVLMGFSKL 115
Query: 140 FSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQIXX 199
S+EM+ILGRF+IG+ GL G PMY+ E+SP LRGA+GT++QL I + I+I+Q+
Sbjct: 116 GKSFEMLILGRFIIGVYCGLTTGFVPMYVGEVSPTALRGALGTLHQLGIVVGILIAQVFG 175
Query: 200 XXXXXXTADGWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQRALSWLRGTI 259
AD WPLLL+ +P + Q I LPFCPESP+++L+++ +E A+ L LRGT
Sbjct: 176 LDSIMGNADLWPLLLSVIFIPALLQCILLPFCPESPRFLLINRNEENRAKSVLKKLRGTA 235
Query: 260 EVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFST 319
+V ++ EM+ E + KV++ E+F + R P+ I++ + ++QQLSGINAV Y+ST
Sbjct: 236 DVTRDLQEMKEEGRQMMREKKVTILELFRSPAYRQPILIAVVLQLSQQLSGINAVFYYST 295
Query: 320 KIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTI 379
IF A + +AT+G G +N T+VSL +VE +GR+TL LIG G+ VL+TI
Sbjct: 296 SIFEKAGVQQPV--YATIGSGIVNTAFTVVSLFVVERAGRRTLHLIGLAGMAGCAVLMTI 353
Query: 380 VMQFVEIFV-MSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWT 438
+ +E MS I+ + FV FF VGPG IPWF+V+ELFSQ RP A ++A NWT
Sbjct: 354 ALALLEQLPWMSYLSIVAIFGFVAFFEVGPGPIPWFIVAELFSQGPRPAAVAVAGFSNWT 413
Query: 439 ANFIVGLGFLPIESIIHGYVFTIFAVLQAMFVLFIYKKVPETKNKTQEEIAAMFRQ 494
+NFIVG+ F +E + YVF IF VL +F +F Y KVPETK +T +EIA+ FRQ
Sbjct: 414 SNFIVGMCFQYVEQLCGPYVFIIFTVLLVLFFIFTYFKVPETKGRTFDEIASGFRQ 469
|
|
| UNIPROTKB|P11166 SLC2A1 "Solute carrier family 2, facilitated glucose transporter member 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 984 (351.4 bits), Expect = 3.9e-99, P = 3.9e-99
Identities = 204/476 (42%), Positives = 296/476 (62%)
Query: 20 PPSQGLNGKLAFAISASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPV 79
P S+ L G+L A+ + LGS Q GYNTGV NAPQK+I E+ +R ++ P
Sbjct: 3 PSSKKLTGRLMLAVGGAVLGS-LQFGYNTGVINAPQKVIEEFYNQTWVHRY--GESILP- 58
Query: 80 IEQSQVTMIFAVAVSIFCXXXXXXXXXXXYVAERFGRKGGLLINNVFVVLAALLQGFSKA 139
+ +T +++++V+IF RFGR+ +L+ N+ ++A+L GFSK
Sbjct: 59 ---TTLTTLWSLSVAIFSVGGMIGSFSVGLFVNRFGRRNSMLMMNLLAFVSAVLMGFSKL 115
Query: 140 FSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQIXX 199
S+EM+ILGRF+IG+ GL G PMY+ E+SP LRGA+GT++QL I + I+I+Q+
Sbjct: 116 GKSFEMLILGRFIIGVYCGLTTGFVPMYVGEVSPTALRGALGTLHQLGIVVGILIAQVFG 175
Query: 200 XXXXXXTADGWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQRALSWLRGTI 259
D WPLLL+ +P + Q I LPFCPESP+++L+++ +E A+ L LRGT
Sbjct: 176 LDSIMGNKDLWPLLLSIIFIPALLQCIVLPFCPESPRFLLINRNEENRAKSVLKKLRGTA 235
Query: 260 EVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFST 319
+V ++ EM+ E + KV++ E+F + R P+ I++ + ++QQLSGINAV Y+ST
Sbjct: 236 DVTHDLQEMKEESRQMMREKKVTILELFRSPAYRQPILIAVVLQLSQQLSGINAVFYYST 295
Query: 320 KIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTI 379
IF A + +AT+G G +N T+VSL +VE +GR+TL LIG G+ +L+TI
Sbjct: 296 SIFEKAGVQQPV--YATIGSGIVNTAFTVVSLFVVERAGRRTLHLIGLAGMAGCAILMTI 353
Query: 380 VMQFVEIFV-MSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWT 438
+ +E MS I+ + FV FF VGPG IPWF+V+ELFSQ RP A ++A NWT
Sbjct: 354 ALALLEQLPWMSYLSIVAIFGFVAFFEVGPGPIPWFIVAELFSQGPRPAAIAVAGFSNWT 413
Query: 439 ANFIVGLGFLPIESIIHGYVFTIFAVLQAMFVLFIYKKVPETKNKTQEEIAAMFRQ 494
+NFIVG+ F +E + YVF IF VL +F +F Y KVPETK +T +EIA+ FRQ
Sbjct: 414 SNFIVGMCFQYVEQLCGPYVFIIFTVLLVLFFIFTYFKVPETKGRTFDEIASGFRQ 469
|
|
| MGI|MGI:95758 Slc2a4 "solute carrier family 2 (facilitated glucose transporter), member 4" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 981 (350.4 bits), Expect = 8.2e-99, P = 8.2e-99
Identities = 206/488 (42%), Positives = 300/488 (61%)
Query: 8 NGSKPASPSGNRPPSQGLNGKLAFAISASALGSSFQHGYNTGVFNAPQKLISEWIVDVLK 67
+G + PP Q + G L A+ ++ LGS Q GYN GV NAPQK+I +
Sbjct: 3 SGFQQIGSDDGEPPRQRVTGTLVLAVFSAVLGS-LQFGYNIGVINAPQKVIEQSYNATWL 61
Query: 68 NRSIADGTVNPVIEQSQVTMIFAVAVSIFCXXXXXXXXXXXYVAERFGRKGGLLINNVFV 127
R G + I Q +T ++A++V+IF +++ GRK +L NNV
Sbjct: 62 GRQGPGGPDS--IPQGTLTTLWALSVAIFSVGGMISSFLIGIISQWLGRKRAMLANNVLA 119
Query: 128 VLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLV 187
VL L G + A +SYE++ILGRFLIG SGL +GL PMY+ EI+P HLRGA+GT+ QL
Sbjct: 120 VLGGALMGLANAAASYEILILGRFLIGAYSGLTSGLVPMYVGEIAPTHLRGALGTLNQLA 179
Query: 188 ITISIVISQIXXXXXXXXTADGWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELE 247
I I I+++Q+ TA WPLLLA T++P + Q+I LPFCPESP+Y+ + + E
Sbjct: 180 IVIGILVAQVLGLESMLGTATLWPLLLALTVLPALLQLILLPFCPESPRYLYIIRNLEGP 239
Query: 248 AQRALSWLRGTIEVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQ 307
A+++L L G +V D + E++ E ++ +SL ++ + R PL I++ + ++QQ
Sbjct: 240 ARKSLKRLTGWADVSDALAELKDEKRKLERERPMSLLQLLGSRTHRQPLIIAVVLQLSQQ 299
Query: 308 LSGINAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGF 367
LSGINAV Y+ST IF A + A +AT+G G +N V TLVS++LVE +GR+TL L+G
Sbjct: 300 LSGINAVFYYSTSIFESAGVGQPA--YATIGAGVVNTVFTLVSVLLVERAGRRTLHLLGL 357
Query: 368 MGVFVVTVLLTIVMQFVE-IFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARP 426
G+ +L+T+ + +E + MS I+ + FV FF +GPG IPWF+V+ELFSQ RP
Sbjct: 358 AGMCGCAILMTVALLLLERVPAMSYVSIVAIFGFVAFFEIGPGPIPWFIVAELFSQGPRP 417
Query: 427 LATSLAVSINWTANFIVGLGFLPIESIIHGYVFTIFAVLQAMFVLFIYKKVPETKNKTQE 486
A ++A NWT NFIVG+GF + + YVF +FAVL F +F + KVPET+ +T +
Sbjct: 418 AAMAVAGFSNWTCNFIVGMGFQYVADAMGPYVFLLFAVLLLGFFIFTFLKVPETRGRTFD 477
Query: 487 EIAAMFRQ 494
+I+A FR+
Sbjct: 478 QISAAFRR 485
|
|
| UNIPROTKB|F1RF44 SLC2A4 "Solute carrier family 2, facilitated glucose transporter member 4" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 978 (349.3 bits), Expect = 1.7e-98, P = 1.7e-98
Identities = 204/488 (41%), Positives = 301/488 (61%)
Query: 8 NGSKPASPSGNRPPSQGLNGKLAFAISASALGSSFQHGYNTGVFNAPQKLISEWIVDVLK 67
+G + PP Q + G L A+ ++ LGS Q GYN GV NAPQK+I + +
Sbjct: 3 SGFQQIGSEDGEPPQQRVTGTLVLAVFSAVLGS-LQFGYNIGVINAPQKVIEQSYNETWL 61
Query: 68 NRSIADGTVNPVIEQSQVTMIFAVAVSIFCXXXXXXXXXXXYVAERFGRKGGLLINNVFV 127
R +G + I +T ++A++V+IF +++ GRK +L NN
Sbjct: 62 GRQGPNGPGS--IPPGTLTTLWALSVAIFSVGGMFSSFLLGIISQWLGRKKAMLFNNTLA 119
Query: 128 VLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLV 187
VLA L G +KA +SYEM+ILGRFLIG SGL +GL PMY+ EI+P HLRGA+GT+ QL
Sbjct: 120 VLAGALMGLAKAAASYEMLILGRFLIGAYSGLASGLVPMYVGEIAPTHLRGALGTLNQLA 179
Query: 188 ITISIVISQIXXXXXXXXTADGWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELE 247
I I I+I+Q+ TA WPLLL T++P + Q++ LPFCPESP+Y+ + + E
Sbjct: 180 IVIGILIAQVLGLESMLGTATLWPLLLGITVLPALLQLVLLPFCPESPRYLYIIRNLEGP 239
Query: 248 AQRALSWLRGTIEVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQ 307
A+++L L G +V + E++ E ++ +SL ++ + R PL I++ + ++QQ
Sbjct: 240 ARKSLKRLTGWADVSGALAELKEEKRQLEHERPLSLLQLLGSHTHRQPLIIAIVLQLSQQ 299
Query: 308 LSGINAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGF 367
LSGINAV Y+ST IF A + A +AT+G G +N V TLVS++LVE +GR+TL L+G
Sbjct: 300 LSGINAVFYYSTSIFETAGVGQPA--YATIGAGVVNTVFTLVSVLLVERAGRRTLHLLGL 357
Query: 368 MGVFVVTVLLTIVMQFVE-IFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARP 426
G+ +L+T+ + +E + MS I+ + FV FF +GPG IPWF+V+ELFSQ RP
Sbjct: 358 AGMCGCAILMTVALLLLERVPAMSYVSIVAIFGFVAFFEIGPGPIPWFIVAELFSQGPRP 417
Query: 427 LATSLAVSINWTANFIVGLGFLPIESIIHGYVFTIFAVLQAMFVLFIYKKVPETKNKTQE 486
A ++A NWT+NFI+G+GF + + YVF +FAVL F +F + KVPET+ +T +
Sbjct: 418 AAMAVAGFSNWTSNFIIGMGFQYVADAMGPYVFLLFAVLLLGFFIFTFLKVPETRGRTFD 477
Query: 487 EIAAMFRQ 494
+I+A FR+
Sbjct: 478 QISATFRR 485
|
|
| RGD|2711 Slc2a4 "solute carrier family 2 (facilitated glucose transporter), member 4" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 978 (349.3 bits), Expect = 1.7e-98, P = 1.7e-98
Identities = 204/488 (41%), Positives = 301/488 (61%)
Query: 8 NGSKPASPSGNRPPSQGLNGKLAFAISASALGSSFQHGYNTGVFNAPQKLISEWIVDVLK 67
+G + PP Q + G L A+ ++ LGS Q GYN GV NAPQK+I +
Sbjct: 3 SGFQQIGSEDGEPPQQRVTGTLVLAVFSAVLGS-LQFGYNIGVINAPQKVIEQSYNATWL 61
Query: 68 NRSIADGTVNPVIEQSQVTMIFAVAVSIFCXXXXXXXXXXXYVAERFGRKGGLLINNVFV 127
R G + I Q +T ++A++V+IF +++ GRK +L NNV
Sbjct: 62 GRQGPGGPDS--IPQGTLTTLWALSVAIFSVGGMISSFLIGIISQWLGRKRAMLANNVLA 119
Query: 128 VLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLV 187
VL L G + A +SYE++ILGRFLIG SGL +GL PMY+ EI+P HLRGA+GT+ QL
Sbjct: 120 VLGGALMGLANAAASYEILILGRFLIGAYSGLTSGLVPMYVGEIAPTHLRGALGTLNQLA 179
Query: 188 ITISIVISQIXXXXXXXXTADGWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELE 247
I I I+++Q+ TA WPLLLA T++P + Q++ LPFCPESP+Y+ + + E
Sbjct: 180 IVIGILVAQVLGLESMLGTATLWPLLLAITVLPALLQLLLLPFCPESPRYLYIIRNLEGP 239
Query: 248 AQRALSWLRGTIEVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQ 307
A+++L L G +V D + E++ E ++ +SL ++ + R PL I++ + ++QQ
Sbjct: 240 ARKSLKRLTGWADVSDALAELKDEKRKLERERPLSLLQLLGSRTHRQPLIIAVVLQLSQQ 299
Query: 308 LSGINAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGF 367
LSGINAV Y+ST IF +A + A +AT+G G +N V TLVS++LVE +GR+TL L+G
Sbjct: 300 LSGINAVFYYSTSIFELAGVEQPA--YATIGAGVVNTVFTLVSVLLVERAGRRTLHLLGL 357
Query: 368 MGVFVVTVLLTIVMQFVE-IFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARP 426
G+ +L+T+ + +E + MS I+ + FV FF +GPG IPWF+V+ELFSQ RP
Sbjct: 358 AGMCGCAILMTVALLLLERVPSMSYVSIVAIFGFVAFFEIGPGPIPWFIVAELFSQGPRP 417
Query: 427 LATSLAVSINWTANFIVGLGFLPIESIIHGYVFTIFAVLQAMFVLFIYKKVPETKNKTQE 486
A ++A NWT NFIVG+GF + + YVF +FAVL F +F + +VPET+ +T +
Sbjct: 418 AAMAVAGFSNWTCNFIVGMGFQYVADAMGPYVFLLFAVLLLGFFIFTFLRVPETRGRTFD 477
Query: 487 EIAAMFRQ 494
+I+A FR+
Sbjct: 478 QISATFRR 485
|
|
| UNIPROTKB|F1PWN2 SLC2A1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 976 (348.6 bits), Expect = 2.8e-98, P = 2.8e-98
Identities = 202/476 (42%), Positives = 296/476 (62%)
Query: 20 PPSQGLNGKLAFAISASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPV 79
P S+ L G+L A+ + LGS Q GYNTGV NAPQK+I E+ +R +++P
Sbjct: 3 PGSKKLTGRLMLAVGGAVLGS-LQFGYNTGVINAPQKVIEEFYNQTWIHRY--QESISP- 58
Query: 80 IEQSQVTMIFAVAVSIFCXXXXXXXXXXXYVAERFGRKGGLLINNVFVVLAALLQGFSKA 139
+ +T +++++V+IF RFGR+ +L+ N+ ++++L GFSK
Sbjct: 59 ---TTLTTLWSLSVAIFSVGGMIGSFSVGLFVNRFGRRNSMLMMNLLAFVSSVLMGFSKL 115
Query: 140 FSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQIXX 199
S+EM+ILGRF+IG+ GL G PMY+ E+SP LRGA+GT++QL I + I+I+Q+
Sbjct: 116 AKSFEMLILGRFIIGVYCGLTTGFVPMYVGEVSPTALRGALGTLHQLGIVVGILIAQVFG 175
Query: 200 XXXXXXTADGWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQRALSWLRGTI 259
D WPLLL+ +P + Q + LP CPESP+++L+++ +E A+ L LRGT
Sbjct: 176 LDSIMGNEDLWPLLLSVIFIPALLQCVLLPLCPESPRFLLINRNEENRAKSVLKKLRGTA 235
Query: 260 EVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFST 319
+V ++ EM+ E + KV++ E+F + R P+ I++ + ++QQLSGINAV Y+ST
Sbjct: 236 DVTRDLQEMKEESRQMMREKKVTILELFRSPAYRQPILIAVVLQLSQQLSGINAVFYYST 295
Query: 320 KIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTI 379
IF A + +AT+G G +N T+VSL +VE +GR+TL LIG G+ VL+TI
Sbjct: 296 SIFEKAGVQQPV--YATIGSGIVNTAFTVVSLFVVERAGRRTLHLIGLAGMAGCAVLMTI 353
Query: 380 VMQFVEIFV-MSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWT 438
+ +E MS I+ + FV FF VGPG IPWF+V+ELFSQ RP A ++A NWT
Sbjct: 354 ALALLEQLPWMSYLSIVAIFGFVAFFEVGPGPIPWFIVAELFSQGPRPAAIAVAGFSNWT 413
Query: 439 ANFIVGLGFLPIESIIHGYVFTIFAVLQAMFVLFIYKKVPETKNKTQEEIAAMFRQ 494
+NFIVG+ F +E + YVF IF VL +F +F Y KVPETK +T +EIA+ FRQ
Sbjct: 414 SNFIVGMCFQYVEQLCGPYVFIIFTVLLVLFFIFTYFKVPETKGRTFDEIASGFRQ 469
|
|
| UNIPROTKB|E2R689 SLC2A1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 975 (348.3 bits), Expect = 3.5e-98, P = 3.5e-98
Identities = 202/476 (42%), Positives = 295/476 (61%)
Query: 20 PPSQGLNGKLAFAISASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPV 79
P S L G+L A+ + LGS Q GYNTGV NAPQK+I E+ +R +++P
Sbjct: 3 PASPKLTGRLMLAVGGAVLGS-LQFGYNTGVINAPQKVIEEFYNQTWIHRY--QESISP- 58
Query: 80 IEQSQVTMIFAVAVSIFCXXXXXXXXXXXYVAERFGRKGGLLINNVFVVLAALLQGFSKA 139
+ +T +++++V+IF RFGR+ +L+ N+ ++++L GFSK
Sbjct: 59 ---TTLTTLWSLSVAIFSVGGMIGSFSVGLFVNRFGRRNSMLMMNLLAFVSSVLMGFSKL 115
Query: 140 FSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQIXX 199
S+EM+ILGRF+IG+ GL G PMY+ E+SP LRGA+GT++QL I + I+I+Q+
Sbjct: 116 AKSFEMLILGRFIIGVYCGLTTGFVPMYVGEVSPTALRGALGTLHQLGIVVGILIAQVFG 175
Query: 200 XXXXXXTADGWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQRALSWLRGTI 259
D WPLLL+ +P + Q + LP CPESP+++L+++ +E A+ L LRGT
Sbjct: 176 LDSIMGNEDLWPLLLSVIFIPALLQCVLLPLCPESPRFLLINRNEENRAKSVLKKLRGTA 235
Query: 260 EVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFST 319
+V ++ EM+ E + KV++ E+F + R P+ I++ + ++QQLSGINAV Y+ST
Sbjct: 236 DVTRDLQEMKEESRQMMREKKVTILELFRSPAYRQPILIAVVLQLSQQLSGINAVFYYST 295
Query: 320 KIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTI 379
IF A + +AT+G G +N T+VSL +VE +GR+TL LIG G+ VL+TI
Sbjct: 296 SIFEKAGVQQPV--YATIGSGIVNTAFTVVSLFVVERAGRRTLHLIGLAGMAGCAVLMTI 353
Query: 380 VMQFVEIFV-MSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWT 438
+ +E MS I+ + FV FF VGPG IPWF+V+ELFSQ RP A ++A NWT
Sbjct: 354 ALALLEQLPWMSYLSIVAIFGFVAFFEVGPGPIPWFIVAELFSQGPRPAAIAVAGFSNWT 413
Query: 439 ANFIVGLGFLPIESIIHGYVFTIFAVLQAMFVLFIYKKVPETKNKTQEEIAAMFRQ 494
+NFIVG+ F +E + YVF IF VL +F +F Y KVPETK +T +EIA+ FRQ
Sbjct: 414 SNFIVGMCFQYVEQLCGPYVFIIFTVLLVLFFIFTYFKVPETKGRTFDEIASGFRQ 469
|
|
| UNIPROTKB|F1Q292 SLC2A4 "Solute carrier family 2, facilitated glucose transporter member 4" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 974 (347.9 bits), Expect = 4.5e-98, P = 4.5e-98
Identities = 204/488 (41%), Positives = 298/488 (61%)
Query: 8 NGSKPASPSGNRPPSQGLNGKLAFAISASALGSSFQHGYNTGVFNAPQKLISEWIVDVLK 67
+G + PP Q + G L A+ ++ LGS Q GYN GV NAPQK+I + +
Sbjct: 3 SGFQQIGSEDGEPPQQRVTGTLVLAVFSAVLGS-LQFGYNIGVINAPQKVIEQSYNETWL 61
Query: 68 NRSIADGTVNPVIEQSQVTMIFAVAVSIFCXXXXXXXXXXXYVAERFGRKGGLLINNVFV 127
R G + I +T ++A++V+IF +++ GRK +L+NNV
Sbjct: 62 GRQGPQGPSS--IPPGTLTTLWALSVAIFSVGGMISSFLIGIISQWLGRKRAMLVNNVLA 119
Query: 128 VLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLV 187
VL L G + A +SYEM+ILGRFLIG SGL +GL PMY+ EI+P HLRGA+GT+ QL
Sbjct: 120 VLGGALMGLAHAAASYEMLILGRFLIGAYSGLTSGLVPMYVGEIAPTHLRGALGTLNQLA 179
Query: 188 ITISIVISQIXXXXXXXXTADGWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELE 247
I I I+I+Q+ T WPLLL T++P + Q++ LPFCPESP+Y+ + + E
Sbjct: 180 IVIGILIAQVLGLESMLGTTTLWPLLLGITVLPALLQLVLLPFCPESPRYLYIIRNLEGP 239
Query: 248 AQRALSWLRGTIEVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQ 307
A+++L L G +V + E++ E ++ +SL ++ + R PL I++ + ++QQ
Sbjct: 240 ARKSLKRLTGWADVSGALAELKEEKRKLERERPLSLLQLLGSRTHRQPLVIAVVLQLSQQ 299
Query: 308 LSGINAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGF 367
LSGINAV Y+ST IF A + A +AT+G G +N V TLVS+ LVE +GR+TL L+G
Sbjct: 300 LSGINAVFYYSTSIFETAGVGQPA--YATIGAGVVNTVFTLVSVFLVERAGRRTLHLLGL 357
Query: 368 MGVFVVTVLLTIVMQFVE-IFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARP 426
G+ +L+TI + +E + MS I+ + FV FF +GPG IPWF+V+ELFSQ RP
Sbjct: 358 AGMCGCAILMTIALLLLERLPAMSYVSIVAIFGFVAFFEIGPGPIPWFIVAELFSQGPRP 417
Query: 427 LATSLAVSINWTANFIVGLGFLPIESIIHGYVFTIFAVLQAMFVLFIYKKVPETKNKTQE 486
A ++A NWT+NFI+G+GF I + YVF +FAVL F +F + KVPET+ +T +
Sbjct: 418 AAMAVAGFCNWTSNFIIGMGFQYIAEAMGPYVFLLFAVLLLAFFIFTFLKVPETRGRTFD 477
Query: 487 EIAAMFRQ 494
+I+A FR+
Sbjct: 478 QISADFRR 485
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P17809 | GTR1_MOUSE | No assigned EC number | 0.4495 | 0.9357 | 0.9471 | yes | N/A |
| C0SPB2 | YWTG_BACSU | No assigned EC number | 0.3196 | 0.7951 | 0.8665 | yes | N/A |
| P46896 | GTR1_CHICK | No assigned EC number | 0.4394 | 0.9257 | 0.9408 | yes | N/A |
| Q5R608 | GTR3_PONAB | No assigned EC number | 0.4261 | 0.9277 | 0.9314 | yes | N/A |
| P13355 | GTR1_RABIT | No assigned EC number | 0.4402 | 0.9377 | 0.9491 | yes | N/A |
| P0AEP2 | GALP_ECOL6 | No assigned EC number | 0.3251 | 0.7570 | 0.8125 | yes | N/A |
| P11167 | GTR1_RAT | No assigned EC number | 0.4465 | 0.9377 | 0.9491 | yes | N/A |
| P11166 | GTR1_HUMAN | No assigned EC number | 0.4444 | 0.9377 | 0.9491 | yes | N/A |
| P27674 | GTR1_BOVIN | No assigned EC number | 0.4486 | 0.9377 | 0.9491 | yes | N/A |
| P20303 | GTR1_PIG | No assigned EC number | 0.4519 | 0.8293 | 0.9157 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 498 | |||
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 1e-111 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 1e-94 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 9e-49 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 6e-16 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 1e-08 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 6e-08 | |
| TIGR00887 | 502 | TIGR00887, 2A0109, phosphate:H+ symporter | 2e-07 | |
| TIGR00891 | 405 | TIGR00891, 2A0112, putative sialic acid transporte | 5e-07 | |
| TIGR00893 | 399 | TIGR00893, 2A0114, D-galactonate transporter | 2e-06 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 4e-06 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 7e-06 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 1e-05 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 2e-05 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 5e-05 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 7e-05 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 6e-04 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 0.003 | |
| COG2211 | 467 | COG2211, MelB, Na+/melibiose symporter and related | 0.003 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 337 bits (866), Expect = e-111
Identities = 176/454 (38%), Positives = 259/454 (57%), Gaps = 15/454 (3%)
Query: 41 SFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGG 100
F GY+TGV A LI + A +I VSIF G
Sbjct: 9 GFLFGYDTGVIGAFLTLIKFFKRFGALTSIGACAAST-----VLSGLI----VSIFSVGC 59
Query: 101 IIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLN 160
+IG G + +RFGRK LLI NV V+ ALLQGF+K S + M+I+GR ++G+ G
Sbjct: 60 LIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKS-FYMLIVGRVIVGLGVGGI 118
Query: 161 AGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLLGTA-DGWPLLLAFTLV 219
+ L PMY++EI+P LRGA+G++YQL IT I+++ I+GLG + DGW + L V
Sbjct: 119 SVLVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFV 178
Query: 220 PGIYQMITLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIP 279
P I +I L F PESP++ L+ KG+ EA+ L+ LRG +V E+ E + E
Sbjct: 179 PAILLLIGLLFLPESPRW-LVLKGKLEEARAVLAKLRGVSDVDQEIQEEKDSLERSVEAE 237
Query: 280 KVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTMAQLSDTAAQWATLGM 339
K S E+F +R L + + + + QQL+GINA+ Y+S IF LSD+ T+ +
Sbjct: 238 KASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGLSDSL--LVTIIV 295
Query: 340 GTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIV-MQFVEIFVMSIFCIILVI 398
G +N V T +++ LV+ GR+ LLL+G G+ + ++L + + + I I+ ++
Sbjct: 296 GVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVAKSKGAGIVAIVFIL 355
Query: 399 MFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIHGYV 458
+F+ FFA+G G +PW +VSELF RP A ++A + NW ANF++G F I I GYV
Sbjct: 356 LFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLFPIITGAIGGYV 415
Query: 459 FTIFAVLQAMFVLFIYKKVPETKNKTQEEIAAMF 492
F +FA L +F+LF++ VPETK +T EEI +F
Sbjct: 416 FLVFAGLLVLFILFVFFFVPETKGRTLEEIDELF 449
|
Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 295 bits (756), Expect = 1e-94
Identities = 172/488 (35%), Positives = 258/488 (52%), Gaps = 23/488 (4%)
Query: 11 KPASPSGNRPPSQGLNGKLAFAISASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRS 70
AS P G +S A GY+TGV K S
Sbjct: 7 ADASELLVTPAGLGSTYWKVALLSLIAAIGGLMFGYDTGVIGG----ALALPAFEFKFTS 62
Query: 71 IADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLA 130
+ + + VSIF GG IG G++++RFGRK LLI + V+
Sbjct: 63 ANSDSYSSS--LWGLV------VSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIG 114
Query: 131 ALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITI 190
A+L G + S EM+I+GR L+GI G+ + L PMYL+EI+P LRGA+ ++YQL IT
Sbjct: 115 AILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITF 174
Query: 191 SIVISQILGLG-GLLGTADGWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQ 249
I+++ G G L GW + L L+P + L F PESP++ L+ KG+ EA+
Sbjct: 175 GILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRW-LVGKGRVEEAR 233
Query: 250 RALSWLRGT----IEVHDEMDEMRAEYESIKLIPKVSLREMFTNAQ-LRIPLFISMTVMV 304
++L+ LRGT E+ DE++ + + K + S +F++ + +R LF+ + +
Sbjct: 234 KSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQW 293
Query: 305 AQQLSGINAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLL 364
QQ +GINA++Y+S IF A +S A ++ +G +N T V++ LV+ GR+ LLL
Sbjct: 294 FQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLL 353
Query: 365 IGFMGVFVVTVLLTIV-MQFV--EIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFS 421
IG G+ + +L I+ FV I+ +++F+ FFA+G G +PW +VSE+F
Sbjct: 354 IGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFP 413
Query: 422 QSARPLATSLAVSINWTANFIVGLGFLPI-ESIIHGYVFTIFAVLQAMFVLFIYKKVPET 480
S RP S+AV+ NW ANFIVG F + ESI G VF F L + ++F+Y +PET
Sbjct: 414 LSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPET 473
Query: 481 KNKTQEEI 488
K +T EEI
Sbjct: 474 KGRTLEEI 481
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 174 bits (442), Expect = 9e-49
Identities = 113/417 (27%), Positives = 201/417 (48%), Gaps = 32/417 (7%)
Query: 99 GGIIGGAATGYVAERFGRKGGLLINNVFVVLAAL------LQGFSKAFSSYEMII---LG 149
G IIGGA GY + RFGR+ L I V ++AL S + + +
Sbjct: 67 GCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIY 126
Query: 150 RFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLLGTAD- 208
R + GI GL + L+PMY+AEI+P H+RG + + Q I ++ +
Sbjct: 127 RIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDAS 186
Query: 209 -----GWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHD 263
GW + A +P + ++ L F PE+P+Y L+S+G++ +A+ L + G
Sbjct: 187 WLNTDGWRYMFASEAIPALLFLMLLYFVPETPRY-LMSRGKQEQAEGILRKIMGNTLATQ 245
Query: 264 EMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFT 323
+ E++ + + + ++ I I + + V QQ GIN V+Y++ +IF
Sbjct: 246 ALQEIKHSLDHGR----KTGGKLLMFGVGVI--VIGVMLSVFQQFVGINVVLYYAPEIFK 299
Query: 324 MAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQF 383
S A T+ +G +N+ T+++++ V+ GRK L +IG +G+ + L
Sbjct: 300 TLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT 359
Query: 384 VEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIV 443
++++ ++ +V FA+ G + W L+SE+F + R A ++AV+ W AN+ V
Sbjct: 360 QAPGIVALLSMLF---YVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFV 416
Query: 444 GLGF-------LPIESIIHGYVFTIFAVLQAMFVLFIYKKVPETKNKTQEEIAAMFR 493
F + +G+ + I+ + + LF++K VPETK KT EE+ A++
Sbjct: 417 SWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEALWE 473
|
Length = 479 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 6e-16
Identities = 86/410 (20%), Positives = 160/410 (39%), Gaps = 47/410 (11%)
Query: 90 AVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILG 149
+ S F G ++G GY+++RFGRK LL++ + ++ +L FS +Y + ++
Sbjct: 130 DLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSP---NYTVFLVF 186
Query: 150 RFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLLGTADG 209
R L+G+ G A + E P R VGT+ Q+ ++ +V+ L +
Sbjct: 187 RLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVL-----LPLVAYFIPD 241
Query: 210 WPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQRALSWLRGT--IEVHDEMDE 267
W L +P + F PESP++ L+S+G+ EA + L + ++ E+
Sbjct: 242 WRWLQLAVSLPTFLFFLLSWFVPESPRW-LISQGRIEEALKILQRIAKINGKKLPAEVLS 300
Query: 268 MRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTMAQL 327
+ E + + S ++F LR M + A Y+ +
Sbjct: 301 LSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFT------TAFSYYGLVLDL--GN 352
Query: 328 SDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIF 387
G + + L++L+L++ GR+ ++ + +++ FV
Sbjct: 353 LGGNIYLDLFISGLVELPAKLITLLLIDRLGRR----YTMAASLLLAGVALLLLLFVP-- 406
Query: 388 VMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWT------ANF 441
V F + + F + + +EL+ R + V + F
Sbjct: 407 VDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVR--NLGVGVCSTMARVGSIISPF 464
Query: 442 IVGLG----FLPIESIIHGYVFTIFAVLQAMFVLFIYKKVPETKNKTQEE 487
+V LG FLP+ +F A+L + LF+ PETK E
Sbjct: 465 LVYLGEKWLFLPL------VLFGGLALLAGILTLFL----PETKGVPLPE 504
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 1e-08
Identities = 42/143 (29%), Positives = 69/143 (48%), Gaps = 5/143 (3%)
Query: 90 AVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILG 149
+ VS F G +G GY+++RFGR+ LL+ + L +LL F+ SS ++++G
Sbjct: 37 GLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA---SSLWLLLVG 93
Query: 150 RFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLLGTADG 209
RFL+G+ G A +AE P RG ++ + ++ + LGGLL + G
Sbjct: 94 RFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPL--LGGLLAESLG 151
Query: 210 WPLLLAFTLVPGIYQMITLPFCP 232
W L + G+ + L F
Sbjct: 152 WRWLFLILAILGLLLALLLLFLL 174
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 6e-08
Identities = 64/355 (18%), Positives = 115/355 (32%), Gaps = 69/355 (19%)
Query: 89 FAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIIL 148
++ + G +G + R R+ LL +++ LL + S+ +++L
Sbjct: 50 AGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALA---PSFAVLLL 106
Query: 149 GRFLIGINSGLNAGLAPMYLAEISPVHLRG-AVGTVYQLVITISIVISQILG--LGGLLG 205
R L G+ G+ +A A + P RG A+ ++ + ++ +LG LG LG
Sbjct: 107 ARALAGLAHGVFWSIAAALAARLVPPGKRGRALA-----LVFTGLTLATVLGVPLGTFLG 161
Query: 206 TADGWP----LLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQRALSWLRGTIEV 261
GW + L+ + LP P I S L L
Sbjct: 162 QLFGWRATFLAIAVLALLALLLLWKLLP-----PSEISGSLPGPLRTLLRL--------- 207
Query: 262 HDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVI-YFSTK 320
+ + L + M +G A+ Y
Sbjct: 208 -------------------------LRRPGVLLGLLATFLFM-----TGHFALYTYIRPF 237
Query: 321 IFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIV 380
+ ++A S +A L G + L+ L + R+ L+ +LL +
Sbjct: 238 LESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADRGPRRALIAA---------LLLLAL 288
Query: 381 MQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSI 435
F + + L ++F+ FA P + A LA SL V+
Sbjct: 289 ALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLARLAPDAADLAGSLNVAA 343
|
Length = 394 |
| >gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 2e-07
Identities = 108/463 (23%), Positives = 174/463 (37%), Gaps = 85/463 (18%)
Query: 90 AVAVSIFCAGGIIGGAATGYVAERFGRK---GGLLINNVFVVLAALLQGFSKAFSSYEMI 146
AV S G + G G++A++ GRK G LI + +A+ L S S +
Sbjct: 60 AVNGSASI-GTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATL 118
Query: 147 ILGRFLIGINSGLNAGLAPMYLAEISPVHLRGA-VGTVY------QLV-----ITISIVI 194
RF +G+ G + L+ + +E + RGA + V+ L + +
Sbjct: 119 CFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGF 178
Query: 195 SQILGLGGLLGTADG---------WPLLLAFTLVPGIYQMITLPF---CPESPKYILLSK 242
L + G W +L+ F VP ++ L F PE+P+Y
Sbjct: 179 KHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPA---LLALYFRLTIPETPRYTADVA 235
Query: 243 GQELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLR----IPLFI 298
+A +S + +++ E DE+ + + +PK S + FT+ L
Sbjct: 236 KDVEQAASDMSAV-LQVKIEAEPDEVE-KASTAVEVPKASWSDFFTHFFKWRHGKHLLGT 293
Query: 299 SMT------VMVAQQL--SGINAVIYFSTKIFTMAQ---LSDTA-AQWATLGMGTMNVVM 346
+ + L I + I +S T L TA GT V
Sbjct: 294 AGSWFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGT--VPG 351
Query: 347 TLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSI---------FCIILV 397
V++ LV+I GRK I MG F++TVL FV+ F I V
Sbjct: 352 YWVTVFLVDIIGRKP---IQLMGFFILTVLF---------FVLGFAYNHLSTHGFLAIYV 399
Query: 398 IMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPI------- 450
+ F GP + + + E+F R A ++ + I GFL +
Sbjct: 400 LAQF-FANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPT 458
Query: 451 ----ESIIHGYVFTIFAVLQAMFVLFIYKKVPETKNKTQEEIA 489
I G+V IFA+ + +LF +PETK K+ EE++
Sbjct: 459 KGYPTGIWMGHVLEIFALFMFLGILFTLL-IPETKGKSLEELS 500
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502 |
| >gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 5e-07
Identities = 61/328 (18%), Positives = 108/328 (32%), Gaps = 27/328 (8%)
Query: 102 IGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNA 161
G G +R+GR+ ++ + V L GF+ Y + + R +IGI G
Sbjct: 62 FGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFA---PGYITMFIARLVIGIGMGGEY 118
Query: 162 GLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLLGTADGWPLLLAFTLVPG 221
G + Y+ E P HLR + + V++ + + DGW L +++P
Sbjct: 119 GSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPI 178
Query: 222 IYQMITLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIPKV 281
I+ + PE+ + G+ L G I I
Sbjct: 179 IFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGE--------------HRIANIVMT 224
Query: 282 SLREMFTNAQLRIPLFIS-MTVMVAQQLSGINAVIYFSTKIFTMAQLSDTAAQWATLGMG 340
M +A R P F+ + +++ L T + LS +
Sbjct: 225 LAAAMVQSAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSN 284
Query: 341 TMNVVMTLVSLVLVEISG-RKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIM 399
+V V L + G RK + G L I+ F +++ + L
Sbjct: 285 IGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQ------LLIIPVFAIGANVAVLGLGLFFQ 338
Query: 400 FVVFFAVGPGSIPWFLVSELFSQSARPL 427
++ + G +P + E F R
Sbjct: 339 QMLVQGIW-GILP-KHLGEYFPTDQRAA 364
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405 |
| >gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 72/390 (18%), Positives = 141/390 (36%), Gaps = 44/390 (11%)
Query: 93 VSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFL 152
S F G ++G G++ +RFG + L + V + LQ F+ A+ S + + R L
Sbjct: 35 FSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVS---LYILRVL 91
Query: 153 IGI-NSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLLGTADGWP 211
+G + G+ + +A P R +++ + +I L G + W
Sbjct: 92 LGAAEAPFFPGI-ILIVASWFPASERATAVSIFNSAQGLGGIIGG--PLVGWILIHFSWQ 148
Query: 212 LLLAFTLVPGI-YQMITLPFCPESPKYILLSKGQE--LEAQRALSWLRGTIEVHDEMDEM 268
V GI + ++ L F P+ P+ +E + L+ +G +
Sbjct: 149 WAFIIEGVLGIIWGVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPK---- 204
Query: 269 RAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTMAQLS 328
K ++E+ + ++ L + +V L +F T + LS
Sbjct: 205 -----------KYQIKELLKDRRV-WGLALG-QFLVNIGLGFFL--TWFPTYLVQERGLS 249
Query: 329 DTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLL------IGFMGVFVVTVLLTIVMQ 382
L G M + +V + + + GR + LL + F + L + +
Sbjct: 250 -------ILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLL 302
Query: 383 FVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFI 442
++I L ++ + FF +G G+I W L+S+ + L L S+ +
Sbjct: 303 MFATNYVNIPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIV 362
Query: 443 VGLGFLPIESIIHGYVFTIFAVLQAMFVLF 472
+ I + F ++ A L
Sbjct: 363 GPIVIGAIAATT--GSFAGALMVVAALALI 390
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 4e-06
Identities = 57/352 (16%), Positives = 114/352 (32%), Gaps = 45/352 (12%)
Query: 92 AVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRF 151
++ F G + G +++RFGR+ LLI ++L AL SS ++++ R
Sbjct: 37 LLTAFSLGYALAQPLAGRLSDRFGRRRVLLI---GLLLFALGLLLLLFASSLWLLLVLRV 93
Query: 152 LIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLLGTADGWP 211
L G+ G A +A+ P RG + + + + LGGLL + GW
Sbjct: 94 LQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPL--LGGLLASLFGWR 151
Query: 212 LLLAFTLVPG-IYQMITLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDEMDEMRA 270
+ + ++ P P K E + +
Sbjct: 152 AAFLILAILALLAAVLAALLLPRPPPESKRPKPAEEAPAPLVPAWK-------------- 197
Query: 271 EYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTMAQLSDT 330
L + + + + A++ + + LS
Sbjct: 198 --------------------LLLRDPVLWLLLALLLFGFAFFALLTYLPLYQEVLGLSAL 237
Query: 331 AAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMS 390
A G + + L+ L + GR+ LL+ + + + + L ++ +
Sbjct: 238 LAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLL 297
Query: 391 IFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFI 442
+ ++L + F LVS+L + R A+ L + +
Sbjct: 298 VALLLLGFGAGLVF-----PALNALVSDLAPKEERGTASGLYNTAGSLGGAL 344
|
Length = 346 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 7e-06
Identities = 49/195 (25%), Positives = 76/195 (38%), Gaps = 35/195 (17%)
Query: 94 SIFCAGGIIGGAATGYVAERFGRKGGLLI----NNVFVVLAALLQGFSKAFSSYEMIILG 149
I G ++G G +A++ GRK LLI N F ++ +QG Y +
Sbjct: 209 LIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQG-------YGFFLFC 261
Query: 150 RFLIGINSGLNAGLAPMYLAEISPVHLRGA----------VGTVYQLVITISIVISQILG 199
R L G G + Y AE RG +G +Y + +I+ G
Sbjct: 262 RLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPH--YG 319
Query: 200 LGGLLGTA---DGWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQRALSWLR 256
+G+A W + + P ++ + L F PESP++ L G+ EA L
Sbjct: 320 WSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRF-FLENGKHDEAWMILK--- 375
Query: 257 GTIEVHDEMDEMRAE 271
+HD MRA+
Sbjct: 376 ---LIHDT--NMRAK 385
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-05
Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 5/138 (3%)
Query: 93 VSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFL 152
++ + G +I +G + +RFGRK LL+ VL+ + S S+ ++I+ RFL
Sbjct: 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS---SNITVLIIARFL 60
Query: 153 IGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLLGTADGWPL 212
G + +A+I P RG + I + ++ LGG+L GW
Sbjct: 61 QGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLG--PPLGGVLAQFLGWRA 118
Query: 213 LLAFTLVPGIYQMITLPF 230
F + + I L F
Sbjct: 119 PFLFLAILALAAFILLAF 136
|
Length = 141 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 2e-05
Identities = 69/366 (18%), Positives = 133/366 (36%), Gaps = 42/366 (11%)
Query: 80 IEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRK----GGLLINNVFVVLAALLQG 135
++ Q+ +F+ + G G G +A+R GR+ +L+ +VF +L AL
Sbjct: 49 LDPVQLGFLFSAGL----IGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATN 104
Query: 136 FSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVIS 195
+ +++IL RFL G+ G ++E +P RG + I +
Sbjct: 105 VT------QLLIL-RFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVG 157
Query: 196 QILGLGGLLGTADGWPLLLAF-TLVPGIYQMITLPFCPESPKYILLSKGQELEAQRALSW 254
L G L GW L + P + ++ + F PES + L+SK E +
Sbjct: 158 GF--LAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDF-LVSKRPETVRRIV--- 211
Query: 255 LRGTIEVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAV 314
++ E E ++ + + + +F RI + + + + V
Sbjct: 212 NAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTARITVLLWLLYFMLL-------V 264
Query: 315 IYFSTKIFTMAQLSDTAAQW--ATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFV 372
+ + + + A G N + S+ I G L +G V
Sbjct: 265 GVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSI----IFGW----LADRLGPRV 316
Query: 373 VTV--LLTIVMQFVEIFVMSIFCIILVIMFVV-FFAVGPGSIPWFLVSELFSQSARPLAT 429
+ LL V + + ++L++ + FF G S + L++ + + R
Sbjct: 317 TALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGV 376
Query: 430 SLAVSI 435
A+ I
Sbjct: 377 GWAIGI 382
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 5e-05
Identities = 33/183 (18%), Positives = 67/183 (36%), Gaps = 9/183 (4%)
Query: 294 IPLFISMTVMVAQQLSGINAVIYFSTKIFT-MAQLSDTAAQWATLGMGTMNVVMTLVSLV 352
+ L + + + G ++ + + LS A G ++ L+ +
Sbjct: 174 LRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGL 233
Query: 353 LVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIP 412
L + GR+ LLL+ + LL + + S+ +++ ++ + F
Sbjct: 234 LSDRLGRRRLLLLIGL-------LLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPAL 286
Query: 413 WFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPI-ESIIHGYVFTIFAVLQAMFVL 471
L SEL AR A+ L + + L + ++ +G VF I A L + L
Sbjct: 287 LTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAAL 346
Query: 472 FIY 474
+
Sbjct: 347 LLL 349
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 7e-05
Identities = 78/353 (22%), Positives = 130/353 (36%), Gaps = 63/353 (17%)
Query: 101 IIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMI--------ILGRFL 152
+G G+ +R GRK L+I + + + LL G SY I +L R +
Sbjct: 49 PLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGL---LPSYATIGIWAPILLLLARLI 105
Query: 153 IGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIV--------ISQILGLGGLL 204
G + G G A +YLAE +P RG G+ Q+ + ++ +S +LG LL
Sbjct: 106 QGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALL 165
Query: 205 GTADGW--PLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVH 262
GW P L++ LV +LR +E
Sbjct: 166 --EWGWRIPFLVSAVLVLIGL------------------------------YLRRNLE-- 191
Query: 263 DEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIF 322
E E K + E T R P + + +++A + Y T +
Sbjct: 192 -ETPVFEKAQEKHKKKR-GPIAETLTKH--RKPFLLGLGLVIATTTTFYLITTYLPTYLT 247
Query: 323 TMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQ 382
LS +A + + + +S L + GR+ +L+I + ++ V L + +
Sbjct: 248 QTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALL 307
Query: 383 FVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSI 435
F + F LV+ + + G + FL ELF R SLA ++
Sbjct: 308 DSGSFTLFFF---LVLGMALIGGMYTGPMGSFLP-ELFPTEVRYTGASLAYNL 356
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 6e-04
Identities = 22/110 (20%), Positives = 49/110 (44%)
Query: 86 TMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEM 145
++ + + + G IG G +++R GR+ LL+ + ++LAAL S
Sbjct: 236 ALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLW 295
Query: 146 IILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVIS 195
+++ L+G +GL +++++P RG +Y ++ +
Sbjct: 296 LLVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALG 345
|
Length = 346 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.003
Identities = 31/143 (21%), Positives = 61/143 (42%), Gaps = 4/143 (2%)
Query: 90 AVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILG 149
+ +S+F GGI+G G +++R GR+ LL+ + ++LAAL S ++++
Sbjct: 214 GLLLSLFGLGGILGALLGGLLSDRLGRRRLLLL--IGLLLAALGLLLLALAPSLALLLVA 271
Query: 150 RFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLLGTADG 209
L+G G +E++P RG ++ ++ + + L GLL G
Sbjct: 272 LLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPL--LAGLLLDTGG 329
Query: 210 WPLLLAFTLVPGIYQMITLPFCP 232
+ + + + L P
Sbjct: 330 YGGVFLILAALALLAALLLLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|225121 COG2211, MelB, Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.003
Identities = 32/150 (21%), Positives = 67/150 (44%), Gaps = 16/150 (10%)
Query: 273 ESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTMAQLSDTAA 332
+KL K S +F N L + L +++ + +A + G ++Y+ T + + A
Sbjct: 219 TGVKLKLKDSFLLIFKNRPLLLLLLMNLLLFIAFNIRGS-IMVYYVTYVL---GDPELFA 274
Query: 333 QWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIF 392
L G ++ ++ LV+ G+K L LIG + + V +LL +
Sbjct: 275 YLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLL---------YFTPAG 325
Query: 393 CIILVIMFVVFFAVG---PGSIPWFLVSEL 419
++L+++ ++ VG +PW +V++
Sbjct: 326 SVVLIVVALIIAGVGTGIANPLPWAMVADT 355
|
Length = 467 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 498 | |||
| KOG0569|consensus | 485 | 100.0 | ||
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| KOG0254|consensus | 513 | 100.0 | ||
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 100.0 | |
| KOG0253|consensus | 528 | 100.0 | ||
| PRK15075 | 434 | citrate-proton symporter; Provisional | 100.0 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 100.0 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 100.0 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 100.0 | |
| KOG0252|consensus | 538 | 100.0 | ||
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 100.0 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 100.0 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 100.0 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 100.0 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 100.0 | |
| PRK03699 | 394 | putative transporter; Provisional | 100.0 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 100.0 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 100.0 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 100.0 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 100.0 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 100.0 | |
| PRK10504 | 471 | putative transporter; Provisional | 100.0 | |
| KOG0255|consensus | 521 | 100.0 | ||
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 100.0 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 100.0 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 100.0 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 100.0 | |
| PRK12382 | 392 | putative transporter; Provisional | 100.0 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 100.0 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 100.0 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 100.0 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 100.0 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 100.0 | |
| PRK11043 | 401 | putative transporter; Provisional | 100.0 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 100.0 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.98 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.98 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.98 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.98 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.98 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.98 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.97 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.97 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.97 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.97 | |
| KOG1330|consensus | 493 | 99.97 | ||
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.97 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.97 | |
| KOG2532|consensus | 466 | 99.97 | ||
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.97 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.97 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.97 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.97 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.97 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.97 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.97 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.96 | |
| KOG2533|consensus | 495 | 99.96 | ||
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.96 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.96 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.96 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.96 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.95 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.95 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.95 | |
| KOG2504|consensus | 509 | 99.95 | ||
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.95 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.95 | |
| KOG2615|consensus | 451 | 99.95 | ||
| KOG3764|consensus | 464 | 99.94 | ||
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.94 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.94 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.94 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.94 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.94 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.94 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.93 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.93 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.93 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.92 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.91 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.9 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.89 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.88 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.88 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.88 | |
| KOG4686|consensus | 459 | 99.87 | ||
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.87 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.86 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.85 | |
| KOG2563|consensus | 480 | 99.85 | ||
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.85 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.84 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.84 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.83 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.83 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.8 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.79 | |
| KOG2325|consensus | 488 | 99.77 | ||
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.73 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.67 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.64 | |
| KOG3626|consensus | 735 | 99.62 | ||
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.6 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.58 | |
| KOG2816|consensus | 463 | 99.57 | ||
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.5 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.48 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.47 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.47 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.46 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.45 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.45 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.44 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.43 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.43 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.43 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.43 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.43 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.43 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.42 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.41 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.4 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.4 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.39 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.39 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.38 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.37 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.37 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.36 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.36 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.36 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.35 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.35 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.35 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.35 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.34 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.34 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.33 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.33 | |
| KOG3098|consensus | 461 | 99.33 | ||
| PRK10504 | 471 | putative transporter; Provisional | 99.32 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.32 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.32 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.32 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.32 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.32 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.31 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.31 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.3 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.3 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.3 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.29 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.29 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.29 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.29 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.28 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.27 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.26 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.24 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.24 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.24 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.23 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.23 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.22 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.21 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.21 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.19 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.19 | |
| KOG1330|consensus | 493 | 99.19 | ||
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.18 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.17 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.17 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.14 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.13 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.12 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.12 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.11 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.11 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.1 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.1 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.09 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.09 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.08 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.08 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 99.08 | |
| KOG2615|consensus | 451 | 99.07 | ||
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.07 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.06 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.04 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.04 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.03 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.03 | |
| KOG3764|consensus | 464 | 99.01 | ||
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.01 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.0 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 98.99 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.99 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.99 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.98 | |
| KOG0569|consensus | 485 | 98.96 | ||
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.95 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.94 | |
| KOG3762|consensus | 618 | 98.93 | ||
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.91 | |
| KOG2532|consensus | 466 | 98.85 | ||
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.84 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.83 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.82 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.81 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.81 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.8 | |
| KOG0637|consensus | 498 | 98.78 | ||
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.78 | |
| KOG0253|consensus | 528 | 98.76 | ||
| KOG0255|consensus | 521 | 98.74 | ||
| KOG3574|consensus | 510 | 98.71 | ||
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.7 | |
| KOG2504|consensus | 509 | 98.7 | ||
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.66 | |
| KOG3810|consensus | 433 | 98.62 | ||
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.58 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.58 | |
| KOG0254|consensus | 513 | 98.58 | ||
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.55 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.53 | |
| KOG4686|consensus | 459 | 98.53 | ||
| PRK11462 | 460 | putative transporter; Provisional | 98.48 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.45 | |
| KOG2325|consensus | 488 | 98.43 | ||
| KOG2533|consensus | 495 | 98.41 | ||
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 98.41 | |
| KOG0252|consensus | 538 | 98.37 | ||
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.35 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.31 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 98.31 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.31 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.28 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 98.23 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.21 | |
| KOG4332|consensus | 454 | 98.2 | ||
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.16 | |
| KOG1237|consensus | 571 | 98.15 | ||
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.15 | |
| KOG3762|consensus | 618 | 98.14 | ||
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.08 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.03 | |
| KOG2816|consensus | 463 | 97.99 | ||
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.84 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 97.72 | |
| KOG1479|consensus | 406 | 97.62 | ||
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 97.56 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 97.54 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.52 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.51 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.49 | |
| KOG2563|consensus | 480 | 97.37 | ||
| KOG3626|consensus | 735 | 97.1 | ||
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.09 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 97.04 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 96.75 | |
| KOG3097|consensus | 390 | 96.58 | ||
| PRK03612 | 521 | spermidine synthase; Provisional | 96.43 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 96.41 | |
| KOG0637|consensus | 498 | 96.4 | ||
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 96.27 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 96.23 | |
| KOG3098|consensus | 461 | 96.21 | ||
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 96.1 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 95.71 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 95.63 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 95.06 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 94.91 | |
| KOG3880|consensus | 409 | 94.83 | ||
| KOG1237|consensus | 571 | 93.03 | ||
| KOG4332|consensus | 454 | 91.28 | ||
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 88.91 | |
| KOG3574|consensus | 510 | 88.19 | ||
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 87.27 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 86.54 | |
| KOG1479|consensus | 406 | 85.27 | ||
| KOG3880|consensus | 409 | 83.71 | ||
| KOG2601|consensus | 503 | 80.62 |
| >KOG0569|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-54 Score=403.45 Aligned_cols=466 Identities=46% Similarity=0.835 Sum_probs=424.4
Q ss_pred CCcchHHHHHHHHHhhhhhccccccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHH
Q psy12242 23 QGLNGKLAFAISASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGII 102 (498)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~ 102 (498)
++..++.......++++ .+..||+.+.++.+.+.+++..++++.+++|. + .++++.+.+++.+.+++.+|.++
T Consensus 3 ~~~t~~L~~~~~~~~~g-sf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~-----~-~s~~~~~~lwS~~vs~f~iG~~~ 75 (485)
T KOG0569|consen 3 PKLTRRLLLAVIVATLG-SFQFGYNIGVVNAPQELIKSFINETLIERYGL-----P-LSDSTLDLLWSLIVSIFFIGGMI 75 (485)
T ss_pred CCccHHHHHHHHHHHHh-chhhhhhheecCchHHHHHHHHHHHHHHhcCC-----C-CChHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888889999 69999999999999999999999999999994 3 89999999999999999999999
Q ss_pred HHHhHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHh
Q psy12242 103 GGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGT 182 (498)
Q Consensus 103 ~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~ 182 (498)
|++..|+++||+|||..+.++.++..++.++..++...+++++++++|++.|+..|......+-++.|..|++.||....
T Consensus 76 Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~ 155 (485)
T KOG0569|consen 76 GSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGT 155 (485)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHH
Confidence 99999999999999999999999999999998888777899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCcccCCCCchhHHHHhhhHHHHHHHhhcccccCChhhHHHhcCCHHHHHHHHHhhcCCchhH
Q psy12242 183 VYQLVITISIVISQILGLGGLLGTADGWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVH 262 (498)
Q Consensus 183 ~~~~~~~~g~~~~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~ 262 (498)
+.+.+..+|.+++..++....+.....|++.+.+..+++++.++...++||||||+..+++++++|+++++++++..+.+
T Consensus 156 ~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~ 235 (485)
T KOG0569|consen 156 LLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVE 235 (485)
T ss_pred HHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcch
Confidence 99999999999999987777888888999999999999999999999999999999666999999999999999988666
Q ss_pred HHHHHHHHhHHhhhc--CCCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHHhhcCCCchhHHHHHHHHH
Q psy12242 263 DEMDEMRAEYESIKL--IPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTMAQLSDTAAQWATLGMG 340 (498)
Q Consensus 263 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 340 (498)
++.++..++.++++. .++.+++++++++..|+...+.+.+.+.+++++.+...+|...++++.|++..++.+.....+
T Consensus 236 ~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g 315 (485)
T KOG0569|consen 236 AEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIG 315 (485)
T ss_pred hHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 555554443333322 366789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhh--hhHHHHHHHHHHHHHHHhcCccchhhhhhcc
Q psy12242 341 TMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIF--VMSIFCIILVIMFVVFFAVGPGSIPWFLVSE 418 (498)
Q Consensus 341 ~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (498)
+..++.++++.++.||+|||++++.+..++.+..+.+.......+.. +..+..+...+.+...+..|.+|+.+.+.+|
T Consensus 316 ~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aE 395 (485)
T KOG0569|consen 316 IVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAE 395 (485)
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHH
Confidence 99999999999999999999999999999999888877765544432 4556677888889999999999999999999
Q ss_pred cCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHhh
Q psy12242 419 LFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIHGYVFTIFAVLQAMFVLFIYKKVPETKNKTQEEIAAMFRQI 495 (498)
Q Consensus 419 ~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (498)
++|++.|+.++++....+++..++....++.+.+..|.+.+.++.+.+++..+..+..+||||+|+.+|+.++++++
T Consensus 396 Lf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~~ 472 (485)
T KOG0569|consen 396 LFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGPYVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEKR 472 (485)
T ss_pred hCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888765
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-42 Score=339.01 Aligned_cols=449 Identities=27% Similarity=0.466 Sum_probs=327.9
Q ss_pred chHHHHHHHHHhhhhhccccccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHH
Q psy12242 26 NGKLAFAISASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGA 105 (498)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~ 105 (498)
.+.....+++++++ .+.+++|..++++..|.+++++.+....+++ .++.+. +++.+++.++..++++
T Consensus 7 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~----~~~~s~~~ig~~~~~~ 73 (479)
T PRK10077 7 SSYIFSITLVATLG-GLLFGYDTAVISGTVESLNTVFVAPQNLSES--------AANSLL----GFCVASALIGCIIGGA 73 (479)
T ss_pred chHHHHHHHHHHHH-HHhcCcccceehHhHHHHHHHhccccccccc--------CChhHH----HHHHHHHHHHHHHHHH
Confidence 34566677777788 7999999999999999999988643222222 455666 9999999999999999
Q ss_pred hHHHHHHhhccchhhHHHHHHHHHHHHHHhhhh---------ccchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccc
Q psy12242 106 ATGYVAERFGRKGGLLINNVFVVLAALLQGFSK---------AFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHL 176 (498)
Q Consensus 106 ~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~ 176 (498)
++|+++||+|||++++++.++++++.++++++. ..++++.++++|+++|++.|...+...++++|++|+++
T Consensus 74 ~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~ 153 (479)
T PRK10077 74 LGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI 153 (479)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh
Confidence 999999999999999999999999988887631 11336778899999999999999999999999999999
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHhcCc------ccCCCCchhHHHHhhhHHHHHHHhhcccccCChhhHHHhcCCHHHHHH
Q psy12242 177 RGAVGTVYQLVITISIVISQILGLGG------LLGTADGWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQR 250 (498)
Q Consensus 177 r~~~~~~~~~~~~~g~~~~~~i~~~~------~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~l~~~~~~~~~a~~ 250 (498)
|++++++.+.+..+|.++++.++... ...+..+||+.|++.+++.++..+..+++||+|+++ .++++.+++++
T Consensus 154 rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l-~~~~~~~~~~~ 232 (479)
T PRK10077 154 RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYL-MSRGKQEQAEG 232 (479)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHH-HHcCCHHHHHH
Confidence 99999999999999999987753211 122457999999998887777766677899999987 66777777777
Q ss_pred HHHhhcCCchhHHHHHHHHHhHHhhhcCCCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHHhhcCCCch
Q psy12242 251 ALSWLRGTIEVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTMAQLSDT 330 (498)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 330 (498)
..++...........++.++....++. ..+..+.. ........+....+.+..+++...++.|.+.++.|.+..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~ 306 (479)
T PRK10077 233 ILRKIMGNTLATQALQEIKHSLDHGRK----TGGKLLMF--GVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTD 306 (479)
T ss_pred HHHHHcCChhHHHHHHHHHHHHHHhhh----hhhhhcch--hHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCc
Confidence 666665443322222222111110010 00111110 111122222333344445556667788888888899887
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccc
Q psy12242 331 AAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGS 410 (498)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (498)
.........++..+++.++.++++||+|||+.+..+..+++++.+.+....... ............+...+.....|
T Consensus 307 ~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 383 (479)
T PRK10077 307 IALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQ---APGIVALLSMLFYVAAFAMSWGP 383 (479)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHHhccccc
Confidence 777777788889999999999999999999999998888888777665432211 11122222333334444444557
Q ss_pred hhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHH------Hhhhh-HHHHHHHHHHHHHHHHHHHhccCCCCC
Q psy12242 411 IPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIE------SIIHG-YVFTIFAVLQAMFVLFIYKKVPETKNK 483 (498)
Q Consensus 411 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~------~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (498)
..+.++.|.+|++.|+++.|+.+...+++.++++.+.+.+. +..++ ..+.+.+++++++.++.+.+.||+|++
T Consensus 384 ~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 463 (479)
T PRK10077 384 VCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGK 463 (479)
T ss_pred hhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCC
Confidence 77889999999999999999999999999999988887655 33443 466777777777777777778999999
Q ss_pred CHHHHHHHHHhhhc
Q psy12242 484 TQEEIAAMFRQISY 497 (498)
Q Consensus 484 ~~~~~~~~~~~~~~ 497 (498)
+.+|.+++++++.+
T Consensus 464 ~~~~~~~~~~~~~~ 477 (479)
T PRK10077 464 TLEEMEALWEPETK 477 (479)
T ss_pred CHHHHHHHHhhccc
Confidence 99998888776543
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-43 Score=345.25 Aligned_cols=442 Identities=21% Similarity=0.292 Sum_probs=311.7
Q ss_pred CCCCcchHHHHHHHHHhhhhhccccccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHH
Q psy12242 21 PSQGLNGKLAFAISASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGG 100 (498)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~ 100 (498)
++.+..+.++..+.+++++ .+.+++|...++...|.+.+++... . . + .++.+. +++.+.+.+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~-~~~~g~d~~~~~~~~~~~~~~~~~~---~-~------~-~~~~~~----~~~~~~~~ig~ 69 (502)
T TIGR00887 6 DTAPFGWQHFRAIVIAGVG-FFTDSYDLFCISLVTKMLGYVYYHG---K-G------P-LPSSVS----AAVNGSASIGT 69 (502)
T ss_pred hccccCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccC---c-c------c-chHHHH----HHHHHHHHHHH
Confidence 3456677888888889999 8999999999998888776642100 0 0 0 333344 89999999999
Q ss_pred HHHHHhHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhccch------hHHHHHHHHHHHhhhhhhhcchhhhhhccCcc
Q psy12242 101 IIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSS------YEMIILGRFLIGINSGLNAGLAPMYLAEISPV 174 (498)
Q Consensus 101 ~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~ 174 (498)
.++++++|+++||+|||+++.++.+++.++.++++++ ++ ++.++++|+++|++.|...+....+++|++|+
T Consensus 70 ~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~ 146 (502)
T TIGR00887 70 LAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLS---PGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATK 146 (502)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc---cCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCh
Confidence 9999999999999999999999999999999999887 44 78899999999999999999999999999999
Q ss_pred cchhhhHhHHHHHHHHHHHHHHHHhcCcc--c-------------------CCCCchhHHHHhhhHHHHHHHhhcccccC
Q psy12242 175 HLRGAVGTVYQLVITISIVISQILGLGGL--L-------------------GTADGWPLLLAFTLVPGIYQMITLPFCPE 233 (498)
Q Consensus 175 ~~r~~~~~~~~~~~~~g~~~~~~i~~~~~--~-------------------~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 233 (498)
++|++++++.+.+..+|.++++.++.... . ....+||++|.+.++++++.++..+++||
T Consensus 147 ~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpE 226 (502)
T TIGR00887 147 KWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPE 226 (502)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999887542100 0 11247999999988888888887888999
Q ss_pred ChhhHHHhcCCH-HHHHHHHHhhcCCchhHHHHHHHHHhHHhhhcCCCchhhhHhcccc---chhhHHHHHHHHHHHHhh
Q psy12242 234 SPKYILLSKGQE-LEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIPKVSLREMFTNAQ---LRIPLFISMTVMVAQQLS 309 (498)
Q Consensus 234 ~p~~l~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 309 (498)
||+|+ ..++++ +++++.+.+....+..++ .++.++..+ +++..+.+++++++++. .++..+.....++...+
T Consensus 227 Spr~l-~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~- 302 (502)
T TIGR00887 227 TPRYT-ADVAKDVEQAASDMSAVLQVKIEAE-PDEVEKAST-AVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDI- 302 (502)
T ss_pred CHHHH-HHhCcchHHHHHHHHHHhccccccC-cccccchhc-cccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-
Confidence 99998 565555 456666666543221111 011110000 01112235777776432 22222322333333222
Q ss_pred chHHHHHhHHHHHhhcCCCchhHHH------------HHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHH
Q psy12242 310 GINAVIYFSTKIFTMAQLSDTAAQW------------ATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLL 377 (498)
Q Consensus 310 ~~~~~~~~~~~~~~~~g~~~~~~~~------------~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~ 377 (498)
.++....+.|.+.++.|++....+. ......++.+++.++.++++||+|||+.+..+..+.+++...+
T Consensus 303 ~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l 382 (502)
T TIGR00887 303 AFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVL 382 (502)
T ss_pred HHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHH
Confidence 2234455577777777886543211 2333455677788999999999999999888877777666655
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhh---
Q psy12242 378 TIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESII--- 454 (498)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~--- 454 (498)
........ ... ..........++..+..+..+.+..|.+|++.|+++.|+.+.+++++++++|.+.+.+.+..
T Consensus 383 ~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~ 458 (502)
T TIGR00887 383 GFAYNHLS--THG--FLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPT 458 (502)
T ss_pred HHHHHhcc--hhH--HHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhcccccc
Confidence 54321100 111 11222222333455566778888899999999999999999999999999999999998843
Q ss_pred -------h-hHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHH
Q psy12242 455 -------H-GYVFTIFAVLQAMFVLFIYKKVPETKNKTQEEIAA 490 (498)
Q Consensus 455 -------g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (498)
+ ...+.+++++++++.++ +++.||++++++||+++
T Consensus 459 ~~~~~~~~~~~~~~i~~~~~~~~~i~-~~~lpEt~~~~leei~~ 501 (502)
T TIGR00887 459 KGYPTGIWMGHVLEIFALFMFLGILF-TLLIPETKGKSLEELSG 501 (502)
T ss_pred ccccccccchHHHHHHHHHHHHHHHH-heEeccCCCCCHHhhhC
Confidence 2 24567777777666554 45679999999887654
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-42 Score=343.07 Aligned_cols=423 Identities=17% Similarity=0.163 Sum_probs=317.8
Q ss_pred chHHHHHHHHHhhhhhccccccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHH
Q psy12242 26 NGKLAFAISASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGA 105 (498)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~ 105 (498)
.+++|.++++++++ .+.++++...++..+|.+.++++ ++..+. +++.+++.++.+++++
T Consensus 162 ~~~~~~l~~i~~l~-~~~~g~d~~~is~ilp~i~~~~g----------------ls~~~~----g~l~s~~~lG~iiG~l 220 (742)
T TIGR01299 162 GRFQWALFFVLGLA-LMADGVEVFVVGFVLPSAEKDLC----------------IPDSGK----GMLGLIVYLGMMVGAF 220 (742)
T ss_pred CHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhC----------------CCHHHH----HHHHHHHHHHHHHHHH
Confidence 46677788888888 78899999988989999999888 787777 9999999999999999
Q ss_pred hHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHH
Q psy12242 106 ATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQ 185 (498)
Q Consensus 106 ~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~ 185 (498)
++|+++||+|||+.+++++++.++++++++++ ++++.++++|++.|++.|+..+...+++.|++|+++|++.+++..
T Consensus 221 i~G~LsDR~GRR~~lii~lil~~i~~ll~afa---~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~ 297 (742)
T TIGR01299 221 FWGGLADKLGRKQCLLICLSVNGFFAFFSSFV---QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLC 297 (742)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcC-----cc------cCCCCchhHHHHhhhHHHHHHHhhcccccCChhhHHHhcCCHHHHHHHHHh
Q psy12242 186 LVITISIVISQILGLG-----GL------LGTADGWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQRALSW 254 (498)
Q Consensus 186 ~~~~~g~~~~~~i~~~-----~~------~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~l~~~~~~~~~a~~~~~~ 254 (498)
++..+|.++++.++.. ++ .....+||+.+++.++++++.++..+++||+|+|+ ..+++.+++.+.+++
T Consensus 298 ~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL-~~~gr~~eA~~iL~~ 376 (742)
T TIGR01299 298 MFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFF-LENGKHDEAWMILKL 376 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHH-HHCCCHHHHHHHHHH
Confidence 9999999998875421 11 11235799999999888888888888899999998 888999999999998
Q ss_pred hcCCchh----HHH---HHHHHHhHHh------hhcCC-----------------CchhhhHhccccchhhHHHHHHHHH
Q psy12242 255 LRGTIEV----HDE---MDEMRAEYES------IKLIP-----------------KVSLREMFTNAQLRIPLFISMTVMV 304 (498)
Q Consensus 255 ~~~~~~~----~~~---~~~~~~~~~~------~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (498)
+...+.. ... .+..+...+. ++... +.+++++++. .++++.++....++
T Consensus 377 i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~-~~~~~tl~l~~~wf 455 (742)
T TIGR01299 377 IHDTNMRAKGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNP-EVREITIKLMGVWF 455 (742)
T ss_pred HhcCCCCCcCchhHHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCc-cHHHHHHHHHHHHH
Confidence 8765421 010 0111110000 00000 0134455554 46667777777777
Q ss_pred HHHhhchHHHHHhHHHHHhhc------------------------------------------CC-----C---------
Q psy12242 305 AQQLSGINAVIYFSTKIFTMA------------------------------------------QL-----S--------- 328 (498)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~------------------------------------------g~-----~--------- 328 (498)
...+..+ ....|.|.+++.. |+ +
T Consensus 456 ~~~~~yy-gl~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (742)
T TIGR01299 456 TLSFGYY-GLSVWFPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEEC 534 (742)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhccccccccccccccccc
Confidence 7776544 5555555543221 00 0
Q ss_pred -----------------------------------------------------------chhHHHHHHHHHHHHHHHHHh
Q psy12242 329 -----------------------------------------------------------DTAAQWATLGMGTMNVVMTLV 349 (498)
Q Consensus 329 -----------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~ 349 (498)
.........+.+++.+++.++
T Consensus 535 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il 614 (742)
T TIGR01299 535 TFDDVTSSNTFFKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIV 614 (742)
T ss_pred ceeeccccchhhhccchhhhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 001233355667889999999
Q ss_pred hhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHH
Q psy12242 350 SLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLAT 429 (498)
Q Consensus 350 ~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 429 (498)
+++++||+|||+++..+.++.+++.+++.+... ....++ +.++..++..+..+...++++|++|++.|++++
T Consensus 615 ~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s-------~~~ll~-~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~ 686 (742)
T TIGR01299 615 SALLMDKIGRLRMLAGSMVLSCISCFFLSFGNS-------ESAMIA-LLCLFGGLSIAAWNALDVLTVELYPSDKRATAF 686 (742)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcc-------HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 999999999999998888888877776654321 111222 222233333344567788999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhccCCCCCC
Q psy12242 430 SLAVSINWTANFIVGLGFLPIESIIHGYVFTIFAVLQAMFVLFIYKKVPETKNKT 484 (498)
Q Consensus 430 g~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (498)
|+.+....+|.+++|.+.+.+.+.....++.+.+++.++++++.+ ++||++++.
T Consensus 687 Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~ll~~-~LPET~~~~ 740 (742)
T TIGR01299 687 GFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGGLLAL-KLPDTRGQV 740 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-hCCCCcccc
Confidence 999999999999999999988876544566666666666555444 569988764
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >KOG0254|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=333.45 Aligned_cols=450 Identities=31% Similarity=0.545 Sum_probs=366.2
Q ss_pred CcchHHHHHHHHHhhhhhcccccc--ccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHH
Q psy12242 24 GLNGKLAFAISASALGSSFQHGYN--TGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGI 101 (498)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~ 101 (498)
+.............++ .+..+++ .+..++....+.++..... ...++...+.+|+.+...++..
T Consensus 38 ~~~~~~~~~~~~~~~~-~~~fg~~g~~g~~s~~~~~~~~~~~~~~-------------~~~~~~~~~~s~~~s~~~lga~ 103 (513)
T KOG0254|consen 38 MISPFVILLALVAALG-GLLFGYDGDIGGISGALDFLQRFASLYD-------------LSTGEYSVRQGLLTSILNLGAL 103 (513)
T ss_pred cCceehHHHHHHHHHH-HHHhCcccccccchhhHHHHHhcccccc-------------cccchhHHHHHHHHHHHHHHHH
Confidence 3445666677777777 6888887 5556666666665433110 1111111344999999999999
Q ss_pred HHHHhHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhH
Q psy12242 102 IGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVG 181 (498)
Q Consensus 102 ~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~ 181 (498)
++++++|+++|++|||+.++++.+++.+++++++++ +|+++++++|++.|+|.|......+.+++|..|++.||...
T Consensus 104 ~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a---~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~ 180 (513)
T KOG0254|consen 104 VGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALA---PSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLV 180 (513)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHH
Confidence 999999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhcCcccCCC-CchhHHHHhhhHHHHHHHhhcccccCChhhHHHhcCCHHHHHHHHHhhcC--C
Q psy12242 182 TVYQLVITISIVISQILGLGGLLGTA-DGWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQRALSWLRG--T 258 (498)
Q Consensus 182 ~~~~~~~~~g~~~~~~i~~~~~~~~~-~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~l~~~~~~~~~a~~~~~~~~~--~ 258 (498)
+..+....+|..++..++. ...+. .+||..+.+..+++++..+..+++||+|+|+ .++++.+++++.++++++ +
T Consensus 181 ~~~~l~~~~Gi~~~~~~~~--~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L-~~~g~~~~a~~~l~~l~g~~~ 257 (513)
T KOG0254|consen 181 SLYQLFITIGILLGYCINY--GTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWL-IEKGRLEEAKRSLKRLRGLSP 257 (513)
T ss_pred HHHHHHHHHHHHHHHHHhh--hhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHH-HHcCChHHHHHHHHHHhCCCC
Confidence 9999999999999977543 33222 5899999999999888887788899999999 889999999999999998 3
Q ss_pred chhHHHHHHHHHhHHhhh--cCCCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHHhhcCCCchhHHHHH
Q psy12242 259 IEVHDEMDEMRAEYESIK--LIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTMAQLSDTAAQWAT 336 (498)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 336 (498)
.+...+.+..+.....+. ...+..+.++++ +..+++.+..+....++++++++...+|.+.+++..|.+... ....
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~ 335 (513)
T KOG0254|consen 258 EDVEVELELLKIKLLVEAEVAEGKASWGELFS-PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLAS 335 (513)
T ss_pred cchHHHHHHHHHHHHHhhhcccccccHHHhcC-cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHH
Confidence 344444444442211111 112223556666 667888899999999999999999999999999999887654 5566
Q ss_pred HHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhh-----hhhHHHHHHHHHHHHHHHhcCccch
Q psy12242 337 LGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEI-----FVMSIFCIILVIMFVVFFAVGPGSI 411 (498)
Q Consensus 337 ~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (498)
...++..+++..++.++.||+|||+.++.+...+.++.++++........ ....+..+...+++...+..+..++
T Consensus 336 ~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v 415 (513)
T KOG0254|consen 336 IILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPV 415 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccc
Confidence 77788888899999999999999999999999999999988877655432 1346677777888888899999999
Q ss_pred hhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhh-hHHHHHHHHHHHHHHH-HHHHhccCCCCCCHHHHH
Q psy12242 412 PWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIH-GYVFTIFAVLQAMFVL-FIYKKVPETKNKTQEEIA 489 (498)
Q Consensus 412 ~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 489 (498)
.+.+.+|.+|.+.|+++.++....++..+.+....+.......+ ...+..+++++.+... +.+++.||+|+++.||++
T Consensus 416 ~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~ 495 (513)
T KOG0254|consen 416 PWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEIN 495 (513)
T ss_pred hhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHH
Confidence 99999999999999999999999999999999888888877766 6667777777777776 788889999999999999
Q ss_pred HHHHhh
Q psy12242 490 AMFRQI 495 (498)
Q Consensus 490 ~~~~~~ 495 (498)
+.++++
T Consensus 496 ~~~~~~ 501 (513)
T KOG0254|consen 496 ELFEEG 501 (513)
T ss_pred HHHHcC
Confidence 887664
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=323.84 Aligned_cols=450 Identities=36% Similarity=0.575 Sum_probs=326.2
Q ss_pred CCcchHHHHHHHHHhhhhhccccccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHH
Q psy12242 23 QGLNGKLAFAISASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGII 102 (498)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~ 102 (498)
.+..++.+....++.++ .+..+++...++...+.+..+++.+.+..-+ .+..+. +++.+++.++..+
T Consensus 20 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~----~~~~~~~~~~~~i 86 (481)
T TIGR00879 20 GSTYWKVALLSLIAAIG-GLMFGYDTGVIGGALALPAFEFKFTSANSDS--------YSSSLW----GLVVSIFLVGGFI 86 (481)
T ss_pred CcccHHHHHHHHHHHHH-HHhcccccchhhhhhhcHHHHHhcCCcccCC--------CChhHH----HHHHHHHHHHHHH
Confidence 34445666666667777 7889999999988888888887722110000 224555 9999999999999
Q ss_pred HHHhHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHh
Q psy12242 103 GGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGT 182 (498)
Q Consensus 103 ~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~ 182 (498)
+++++|+++||+|||++++++.+++.++.+++.+.+...+++.++++|+++|++.+...+...+++.|++|+++|+++++
T Consensus 87 ~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~ 166 (481)
T TIGR00879 87 GALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTS 166 (481)
T ss_pred HHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhh
Confidence 99999999999999999999999999999999776433556689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHh-cCcccCCCCchhHHHHhhhHHHHHHHhhcccccCChhhHHHhcCCHHHHHHHHHhhcCCchh
Q psy12242 183 VYQLVITISIVISQILG-LGGLLGTADGWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQRALSWLRGTIEV 261 (498)
Q Consensus 183 ~~~~~~~~g~~~~~~i~-~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~ 261 (498)
+.+.+..+|..+++.++ ......+..+||+.|++.++..++.++..+++||+|+++ ..+++.+++++..++.....+.
T Consensus 167 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 245 (481)
T TIGR00879 167 LYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWL-VGKGRVEEARKSLARLRGTSGE 245 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHH-HHcCChHHHHHHHHHHhCCCCC
Confidence 99999999999999965 114555678999999997777777766777899999876 5555555555554444332221
Q ss_pred HHHHHH----HHHhHHhhhcCCCchhhhHhcccc-chhhHHHHHHHHHHHHhhchHHHHHhHHHHHhhcCCCchhHHHHH
Q psy12242 262 HDEMDE----MRAEYESIKLIPKVSLREMFTNAQ-LRIPLFISMTVMVAQQLSGINAVIYFSTKIFTMAQLSDTAAQWAT 336 (498)
Q Consensus 262 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 336 (498)
..+..+ .+...+.+++..+..+.+.++..+ ..++.+.......+..........++.|++.++.|++..+.+...
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 325 (481)
T TIGR00879 246 DKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVS 325 (481)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHH
Confidence 111111 011111111111122344443221 223444444444444444555677888888888999998888888
Q ss_pred HHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhh---hhHHHHHHHHHHHHHHHhcCccchhh
Q psy12242 337 LGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIF---VMSIFCIILVIMFVVFFAVGPGSIPW 413 (498)
Q Consensus 337 ~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (498)
....++.+++.++.+++.||++||+.+..+..+.+++.+.+.......... ......+....++..++..+..+...
T Consensus 326 ~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (481)
T TIGR00879 326 IIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPW 405 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeeh
Confidence 899999999999999999999999998888777777666655322211110 01223333444455555666667777
Q ss_pred hhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHhccCCCCCCHH
Q psy12242 414 FLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIHG-YVFTIFAVLQAMFVLFIYKKVPETKNKTQE 486 (498)
Q Consensus 414 ~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (498)
.+..|.+|++.|++++|+.+...+++++++|.+.+.+.+..++ ..+++.+++++++.++.+.+.+|+++++.+
T Consensus 406 ~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~ 479 (481)
T TIGR00879 406 VIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLE 479 (481)
T ss_pred hhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCChh
Confidence 8889999999999999999999999999999999999988775 456777777777777777777888776654
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=295.53 Aligned_cols=402 Identities=15% Similarity=0.130 Sum_probs=298.5
Q ss_pred CcchHHHHHHHHHhhhhhccccccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHH
Q psy12242 24 GLNGKLAFAISASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIG 103 (498)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~ 103 (498)
..+++++.+...+.++ +....+.+-.++.+.|.+.++.+ +|.+|. |++.|.++++|.++
T Consensus 22 ~y~~~r~qif~~~fiG-Ya~fYl~RknF~~a~p~l~e~~~----------------lsk~~l----G~i~s~f~i~YG~s 80 (448)
T COG2271 22 TYKRWRIQIFLSIFIG-YAAFYLTRKNFNLAMPALIEDGG----------------LSKTQL----GILGSAFSITYGVS 80 (448)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHhHhhccHHHHHhcC----------------CCHHHH----HHHHHHHHHHHHHH
Confidence 3455667777777777 88888999999999999999988 899999 99999999999999
Q ss_pred HHhHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhH
Q psy12242 104 GAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTV 183 (498)
Q Consensus 104 ~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~ 183 (498)
..+.|.++||.++|+.+..++++.++.+++++++ ++.+.+.++.+++|..+|...|.+...++.|++++|||+..++
T Consensus 81 Kf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs---~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~si 157 (448)
T COG2271 81 KFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFS---PSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSI 157 (448)
T ss_pred HHHhhhhcccCCCceeehHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEE
Confidence 9999999999999999999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCcccCCCCchhHHHHhhhHHHHHHH-hhcccccCChhhHHHhcCCHHHHHHHHHhhcCCchhH
Q psy12242 184 YQLVITISIVISQILGLGGLLGTADGWPLLLAFTLVPGIYQM-ITLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVH 262 (498)
Q Consensus 184 ~~~~~~~g~~~~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~-~~~~~~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~ 262 (498)
++++.++|..+.|++...++...+.+||..|++.++++++.. +.++..+|+|+.. --...|+.+ +
T Consensus 158 Wn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~--GLP~ie~~~-------~----- 223 (448)
T COG2271 158 WNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSE--GLPPIEEYR-------G----- 223 (448)
T ss_pred ehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCcccc--CCCCHHHhh-------c-----
Confidence 999999999999986422466677799999999988776655 4455688888431 111111111 0
Q ss_pred HHHHHHHHhHHhhhcCCCchh-----hhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHH-HhhcCCCchhHHHHH
Q psy12242 263 DEMDEMRAEYESIKLIPKVSL-----REMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKI-FTMAQLSDTAAQWAT 336 (498)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~ 336 (498)
+..+..+++++++..+. +.+++||..| ..+....+....- ..+..+.|.+ .+..|+|..++....
T Consensus 224 ----d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW----~la~a~vfvYivR-~gi~dW~p~YL~e~k~~s~~~a~~a~ 294 (448)
T COG2271 224 ----DPLEIYEEEKENEGLTAWQIFVKYVLKNKLIW----LLALANVFVYVVR-YGINDWGPLYLSEVKGFSLVKANWAI 294 (448)
T ss_pred ----CchhhhhhhccCCCccHHHHHHHHHHcChHHH----HHHHHHHHHHHHH-HHHhhhHHHHHHHhcCCCHHHHHHHH
Confidence 00000011111111233 3455555333 3333333333333 3455555555 477899999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhcc--CCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhh
Q psy12242 337 LGMGTMNVVMTLVSLVLVEIS--GRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWF 414 (498)
Q Consensus 337 ~~~~~~~~~~~~~~g~l~dr~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (498)
+.+-.++++|++++||++||+ |||.+..+.+.+.....+...+... ..+......+....+++..++.-+.-.
T Consensus 295 ~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~-----~~~~~l~~~~l~~iGf~IyGPqmLiGl 369 (448)
T COG2271 295 SLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAP-----NGSYLLDAILLFIIGFLIYGPQMLIGL 369 (448)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCC-----CccHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999999999999999996 6777765544444333333322211 123344445555566666666666677
Q ss_pred hhcccCCCChhhHHHHHHHHHHHH-HHHHHHHhHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHhc
Q psy12242 415 LVSELFSQSARPLATSLAVSINWT-ANFIVGLGFLPIESIIHG-YVFTIFAVLQAMFVLFIYKKV 477 (498)
Q Consensus 415 ~~~~~~p~~~~~~~~g~~~~~~~~-~~~~~~~~~~~l~~~~g~-~~~~~~~~~~~~~~~~~~~~~ 477 (498)
.+.|+.|++..|++.|+...+.++ |...+....|++.|..|| ..|.++.+.++++.+++....
T Consensus 370 ~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~ 434 (448)
T COG2271 370 AAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVW 434 (448)
T ss_pred HHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999 888999999999898887 455555555555555444433
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=312.76 Aligned_cols=402 Identities=18% Similarity=0.224 Sum_probs=268.0
Q ss_pred HHHHHHhhhhhccccccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHH-HHHHHHHHHHHHHHhHHH
Q psy12242 31 FAISASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAV-AVSIFCAGGIIGGAATGY 109 (498)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~s~~~~~~~~~~~~~g~ 109 (498)
.......++ .+++++|..+++...|.+.++++++ .++. ......+ ..++.++++.+++++.|+
T Consensus 16 ~~~~~~~~g-~~~~~~d~~~~~~~~~~i~~~~~~~--------------~~~~-~~~~~~~~~~~~~~l~~~ig~~~~G~ 79 (490)
T PRK10642 16 KAITAASLG-NAMEWFDFGVYGFVAYALGKVFFPG--------------ADPS-VQMIAALATFSVPFLIRPLGGLFFGM 79 (490)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhCCC--------------CCcH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677 7999999999999999999988622 2221 1111122 258889999999999999
Q ss_pred HHHhhccchhhHHHHHHHHHHHHHHhhhhccchhHH--------HHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhH
Q psy12242 110 VAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEM--------IILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVG 181 (498)
Q Consensus 110 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~ 181 (498)
++||+|||+++.++++++++++++++++ +|++. ++++|+++|++.|..++...+++.|++|+++|+++.
T Consensus 80 l~Dr~Grr~~l~~~~~l~~i~~~~~a~~---~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~ 156 (490)
T PRK10642 80 LGDKYGRQKILAITIVIMSISTFCIGLI---PSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMG 156 (490)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHH
Confidence 9999999999999999999999999999 88764 889999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhc--Cccc----CCCCchhHHHHhhhHHHHHHHhhcccccCChhhHHHhcCCHHHHHHHHHhh
Q psy12242 182 TVYQLVITISIVISQILGL--GGLL----GTADGWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQRALSWL 255 (498)
Q Consensus 182 ~~~~~~~~~g~~~~~~i~~--~~~~----~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~l~~~~~~~~~a~~~~~~~ 255 (498)
++...+..+|.++++.+.. ...+ ....|||+.|++.+++.++.++...++||+|+|. ..+++.++..
T Consensus 157 ~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~-~~~~~~~~~~------ 229 (490)
T PRK10642 157 SWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQ-QHVDKLEQGD------ 229 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHH-HHHHhhhhhc------
Confidence 9999888888888876431 1111 2357999999998776666666667799999874 1111110000
Q ss_pred cCCchhHHHHHHHHHhHHhhhcCCCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHH-hhcCCCchhHHH
Q psy12242 256 RGTIEVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIF-TMAQLSDTAAQW 334 (498)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~ 334 (498)
.+..++.++.++++++++ .++.........++... .++....+.|.++ +..|++..+...
T Consensus 230 ----------------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~l~~~~g~s~~~~~~ 290 (490)
T PRK10642 230 ----------------REGLQDGPKVSFKEIATK--HWRSLLTCIGLVIATNV-TYYMLLTYMPSYLSHNLHYSEDHGVL 290 (490)
T ss_pred ----------------cccccccccCCHHHHHHH--hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 000001122345666653 22333333333332222 2334444555555 567888887777
Q ss_pred HHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhh
Q psy12242 335 ATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWF 414 (498)
Q Consensus 335 ~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (498)
......++.+++.++.|+++||+|||+.+..+.....+..+.+..... .. ..........+...... ...+....
T Consensus 291 ~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~g~~~~-~~~g~~~~ 365 (490)
T PRK10642 291 IIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILIN-SN---VIGLIFAGLLMLAVILN-CFTGVMAS 365 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHh-CC---CHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 777788889999999999999999999877666544333222211111 10 11111111111111111 11233445
Q ss_pred hhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh--HHHHHHHHHHHHHHHHHHHhccCCCCC
Q psy12242 415 LVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIHG--YVFTIFAVLQAMFVLFIYKKVPETKNK 483 (498)
Q Consensus 415 ~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (498)
+..|.+|++.|+++.|+.+.....++.++|.+.+++.+..+. ..+++..+.+++..+. .++.||++++
T Consensus 366 ~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~-~~~~pes~~~ 435 (490)
T PRK10642 366 TLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLIT-GVTMKETANR 435 (490)
T ss_pred HHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH-HHHhccccCC
Confidence 667899999999999987777778889999999999886552 2333444444444433 3445776543
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=362.16 Aligned_cols=439 Identities=31% Similarity=0.583 Sum_probs=342.3
Q ss_pred HHhhhhhccccccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q psy12242 35 ASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERF 114 (498)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~ 114 (498)
++.++ .+.+++|...++...+..........++.. .+..+.+.+.+++.+...+|..+|+++.|.++||+
T Consensus 4 ~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~ 73 (451)
T PF00083_consen 4 IASLG-GFLFGYDLGLIGSFASLLGFLQFFGWSSSE---------SSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRY 73 (451)
T ss_pred eeHHH-HHHHHHHHHHHhhHHhhhhhhhcccccccc---------ccccchHHHHHHHHHHHHhhhcccccccccccccc
Confidence 34555 578899998887766544422221111000 01111234559999999999999999999999999
Q ss_pred ccchhhHHHHHHHHHHHHHHhhhhccc---hhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHHHHHHHH
Q psy12242 115 GRKGGLLINNVFVVLAALLQGFSKAFS---SYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITIS 191 (498)
Q Consensus 115 Grr~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g 191 (498)
|||+.+.++.++..+++++.+++ + +++.+.++|+++|++.|...+....++.|..|+++|++..++.+.+..+|
T Consensus 74 GRk~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G 150 (451)
T PF00083_consen 74 GRKPALIISALLMIIGSILIAFA---PSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALG 150 (451)
T ss_pred ccccccccccccccccccccccc---cccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999 7 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcccCC---CCchhHHHHhhhHHHHHHHhhcccccCChhhHHHhcCCHHHHHHHHHhhcCCchhHHHHHHH
Q psy12242 192 IVISQILGLGGLLGT---ADGWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDEMDEM 268 (498)
Q Consensus 192 ~~~~~~i~~~~~~~~---~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 268 (498)
.+++..++. .... ...||..+.+.+++.++.++...++||||+|+ ..++|++|+++.+++.++.+..+++.++.
T Consensus 151 ~~~~~~~~~--~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL-~~~~~~~~A~~~l~~~~~~~~~~~~~~~~ 227 (451)
T PF00083_consen 151 ILLASLIGY--IVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWL-LSKGRDEEAEKVLRKLRGKEIEDEEIEEI 227 (451)
T ss_pred ccccccccc--cccccccccccccccccccccccccccccccccccccee-ccccccccccccccccccccccccccccc
Confidence 999888543 2222 34699999999999888888888999999999 89999999999999977664444443333
Q ss_pred HHhHHhhhcCCCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHH
Q psy12242 269 RAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTL 348 (498)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 348 (498)
.++.++.++. +..++++++++..+++.+..+......++.+.....++.+.+.+..+.+.. -.......+...++.+
T Consensus 228 ~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~ 304 (451)
T PF00083_consen 228 KAEKKESQES-KASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTL 304 (451)
T ss_pred cccccccccc-ceeeeeccccccccccccccccccccccccccccccccccccccccccccc--cccccccccccccccc
Confidence 3332222221 256778888877666777777777777777777888888888888888766 2344455677788888
Q ss_pred hhhhhhhccCCceehhhhhHHHHHHHHHHH--HHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhh
Q psy12242 349 VSLVLVEISGRKTLLLIGFMGVFVVTVLLT--IVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARP 426 (498)
Q Consensus 349 ~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 426 (498)
++.++.||+|||+.+..+..+++++.+.+. .......+.+.....+....+....+..+..++.+.+..|.+|++.|+
T Consensus 305 ~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~ 384 (451)
T PF00083_consen 305 LAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRS 384 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccceeeeeccccccccccccccccccccccccccc
Confidence 888999999999999998888888777665 111111100123333344444555666677888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHH
Q psy12242 427 LATSLAVSINWTANFIVGLGFLPIESIIH-GYVFTIFAVLQAMFVLFIYKKVPETKNKTQEEIAAMF 492 (498)
Q Consensus 427 ~~~g~~~~~~~~~~~~~~~~~~~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (498)
++.|+....+++++++.+.+.+.+.+..+ ...+.++++++++..++.+++.|||++++++|+++.+
T Consensus 385 ~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~f 451 (451)
T PF00083_consen 385 TGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEMF 451 (451)
T ss_pred cccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhhC
Confidence 99999999999999999999999988887 6788888888888888889999999999999998753
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=282.62 Aligned_cols=372 Identities=17% Similarity=0.180 Sum_probs=288.3
Q ss_pred HHHHHHHHhhhhhccccccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhHH
Q psy12242 29 LAFAISASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATG 108 (498)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g 108 (498)
.+..++...++ .|..+.+..+....+|.+.+|++ ++..+. |++.|.|.+++.+++|+..
T Consensus 11 ~~~~l~aLa~~-~F~igttEfv~~gLLp~iA~dl~----------------vs~~~a----G~lis~yAl~~ai~ap~l~ 69 (394)
T COG2814 11 MWLALLALALA-AFAIGTTEFVPVGLLPPIAADLG----------------VSEGAA----GQLITAYALGVALGAPLLA 69 (394)
T ss_pred chHHHHHHHHH-HHHHHhHHHHHHhchHHHHHHcC----------------CCHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 44455566666 67888999999999999999999 899999 9999999999999999999
Q ss_pred HHHHhhccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHHHHH
Q psy12242 109 YVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVI 188 (498)
Q Consensus 109 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~ 188 (498)
.+.||+.||++++..+.++.+++++++++ +||+.++++|++.|+..|.+++...++..+..|++||++++++...+.
T Consensus 70 ~lt~r~~Rr~lLl~~l~lFi~~n~l~alA---p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~ 146 (394)
T COG2814 70 LLTGRLERRRLLLGLLALFIVSNLLSALA---PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGL 146 (394)
T ss_pred HHHcccchHHHHHHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHH
Confidence 99999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcccCCCCchhHHHHhhhHHHHHHHhh-cccccCChhhHHHhcCCHHHHHHHHHhhcCCchhHHHHHH
Q psy12242 189 TISIVISQILGLGGLLGTADGWPLLLAFTLVPGIYQMIT-LPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDEMDE 267 (498)
Q Consensus 189 ~~g~~~~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 267 (498)
.++.++|.++ +.++.+..|||..|++.+.++++.++. +..+| |+. .+
T Consensus 147 tlA~v~GvPL--Gt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~---~~------------------------- 194 (394)
T COG2814 147 TLATVLGVPL--GTFLGQLFGWRATFLAIAVLALLALLLLWKLLP--PSE---IS------------------------- 194 (394)
T ss_pred HHHHHHhccH--HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC--Ccc---CC-------------------------
Confidence 9999999994 459999999999999988887777654 45577 211 00
Q ss_pred HHHhHHhhhcCCCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHH
Q psy12242 268 MRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMT 347 (498)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 347 (498)
++++.+..+..+++|+|+.+..+....+. ....+..++|..|++.+..|++....++....++++.++|+
T Consensus 195 ------~~~~~~~~~~~~~l~~p~v~~~l~~t~l~----~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn 264 (394)
T COG2814 195 ------GSLPGPLRTLLRLLRRPGVLLGLLATFLF----MTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGN 264 (394)
T ss_pred ------CCCCcchhHHHHHhcCchHHHHHHHHHHH----HcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHH
Confidence 00111122356678888655443333222 22345567788888888899999999999999999999999
Q ss_pred HhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhH
Q psy12242 348 LVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPL 427 (498)
Q Consensus 348 ~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 427 (498)
.++|++.|| +.|+.+.....+.++..+.+.+... ..+..+....++.... ...........++. -++.+..
T Consensus 265 ~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~------~~~~~~~~~~~wg~a~-~~~~~~~~~~~a~~-~p~~~~~ 335 (394)
T COG2814 265 LLGGRLADR-GPRRALIAALLLLALALLALTFTGA------SPALALALLFLWGFAF-SPALQGLQTRLARL-APDAADL 335 (394)
T ss_pred HHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcc------hHHHHHHHHHHHHHHh-hhhhhHHHHHhccc-CCCchHH
Confidence 999999999 8888888777777777777655432 1222222222222222 11112223333442 3577899
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhhhhH-HHHHHHHHHHHHHHHHHH
Q psy12242 428 ATSLAVSINWTANFIVGLGFLPIESIIHGY-VFTIFAVLQAMFVLFIYK 475 (498)
Q Consensus 428 ~~g~~~~~~~~~~~~~~~~~~~l~~~~g~~-~~~~~~~~~~~~~~~~~~ 475 (498)
+.+++....++|..+|..++|.+.|+.|+. ..+..+.+.+++.++...
T Consensus 336 a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~ 384 (394)
T COG2814 336 AGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALL 384 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998864 444445555555444443
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=309.56 Aligned_cols=377 Identities=20% Similarity=0.286 Sum_probs=274.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhh
Q psy12242 82 QSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNA 161 (498)
Q Consensus 82 ~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~ 161 (498)
+.+. +++.+++.++..+++++.|+++||+|||++++++.++.+++.++.+++ ++++.+++.|++.|++.+...
T Consensus 126 ~~~~----~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~r~l~G~~~~~~~ 198 (505)
T TIGR00898 126 AWKV----DLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFS---PNYTVFLVFRLLVGMGIGGIW 198 (505)
T ss_pred HHHH----HHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHc---ccHHHHHHHHHHHHhhccchH
Confidence 5555 999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred cchhhhhhccCcccchhhhHhHHHHHHHHHHHHHHHHhcCcccCCCCchhHHHHhhhHHHHHHHhhcccccCChhhHHHh
Q psy12242 162 GLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLLGTADGWPLLLAFTLVPGIYQMITLPFCPESPKYILLS 241 (498)
Q Consensus 162 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~l~~~ 241 (498)
+...+++.|++|+++|+++.++...+..+|.++++.++. .+. +||+.|++.+++.++..+..+++||+|+|+ ..
T Consensus 199 ~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~--~~~---~wr~~~~~~~i~~~~~~~~~~~~~esp~~l-~~ 272 (505)
T TIGR00898 199 VQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAY--FIP---DWRWLQLAVSLPTFLFFLLSWFVPESPRWL-IS 272 (505)
T ss_pred HHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHH--Hhh---HHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HH
Confidence 999999999999999999999999999999999998642 332 399999999888877777778899999998 78
Q ss_pred cCCHHHHHHHHHhhcCCchhH--HHHHHHHHhHHhhhcCCCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHH
Q psy12242 242 KGQELEAQRALSWLRGTIEVH--DEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFST 319 (498)
Q Consensus 242 ~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (498)
+++.+++.+.+++....+... .+..+.+.+.+..++.++.+.+++++++.++...+.....++...+ ..+..+
T Consensus 273 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 347 (505)
T TIGR00898 273 QGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAF-----SYYGLV 347 (505)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHH-----HHHHHh
Confidence 888888877776654322111 1111111111111112235778899988777665554444433221 112222
Q ss_pred HHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q psy12242 320 KIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIM 399 (498)
Q Consensus 320 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (498)
......+.+. .......++..+++.++.+++.||+|||+.+..+.++.+++.+.+.+... ...+... ...+
T Consensus 348 ~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~-~~~~ 418 (505)
T TIGR00898 348 LDLGNLGGNI---YLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPV-----DLYFLRT-ALAV 418 (505)
T ss_pred ccccccCCCh---HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCC-----CchHHHH-HHHH
Confidence 2333344442 23445567788899999999999999999998888777777665554321 1111111 1222
Q ss_pred HHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhccC
Q psy12242 400 FVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIHGYVFTIFAVLQAMFVLFIYKKVPE 479 (498)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 479 (498)
...+......+..+.+..|.+|++.|++++|+.+....+|++++|.+.+ +.+.....++.+++++.+++.++. .++||
T Consensus 419 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~lpe 496 (505)
T TIGR00898 419 LGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGEKWLFLPLVLFGGLALLAGILT-LFLPE 496 (505)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHHHHHhhHHHHHHHHHHHHHHHH-HcCcC
Confidence 2222223334667788899999999999999999999999999999998 544434456666676666665544 45789
Q ss_pred CCCCCHHH
Q psy12242 480 TKNKTQEE 487 (498)
Q Consensus 480 ~~~~~~~~ 487 (498)
+++++++|
T Consensus 497 t~~~~l~~ 504 (505)
T TIGR00898 497 TKGVPLPE 504 (505)
T ss_pred CCCCCCCC
Confidence 98876543
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=293.77 Aligned_cols=387 Identities=17% Similarity=0.174 Sum_probs=253.4
Q ss_pred chHHHHHHHHHhhhhhccccccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHH
Q psy12242 26 NGKLAFAISASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGA 105 (498)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~ 105 (498)
+.+++..+....++ .+.+.+|...++...|.+.++++++ + .++.+. .+.+.+.+..+++..++++
T Consensus 17 ~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~l~~~~~~~------------~-~~~~~~-~~~~~~~~~~~~~~~ig~~ 81 (432)
T PRK10406 17 TRRRIWAIVGASSG-NLVEWFDFYVYSFCSLYFAHIFFPS------------G-NTTTQL-LQTAGVFAAGFLMRPIGGW 81 (432)
T ss_pred cHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCC------------C-CchHHH-HHHHHHHHHHHHHHHHHHH
Confidence 34455566666777 7889999999998889999987521 0 233332 1224444566667779999
Q ss_pred hHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhccchhH--------HHHHHHHHHHhhhhhhhcchhhhhhccCcccch
Q psy12242 106 ATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYE--------MIILGRFLIGINSGLNAGLAPMYLAEISPVHLR 177 (498)
Q Consensus 106 ~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r 177 (498)
++|+++||+|||+++..+.+++++++++++++ +++. .++++|+++|++.|..++...+++.|++|+++|
T Consensus 82 ~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~r 158 (432)
T PRK10406 82 LFGRIADKHGRKKSMLISVCMMCFGSLVIACL---PGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRK 158 (432)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhc---CCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcc
Confidence 99999999999999999999999999999998 6653 688999999999999999999999999999999
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhcC--ccc----CCCCchhHHHHhhhHHHHHHHhhcccccCChhhHHHhcCCHHHHHHH
Q psy12242 178 GAVGTVYQLVITISIVISQILGLG--GLL----GTADGWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQRA 251 (498)
Q Consensus 178 ~~~~~~~~~~~~~g~~~~~~i~~~--~~~----~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~l~~~~~~~~~a~~~ 251 (498)
+++.++...+...|.++++.+... ... ....+||++|++.+++.++.+.....+||+|++. +
T Consensus 159 g~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~--------~---- 226 (432)
T PRK10406 159 GFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQE--------T---- 226 (432)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHH--------H----
Confidence 999999988888888888764311 111 1257999999998888777666556678876331 0
Q ss_pred HHhhcCCchhHHHHHHHHHhHHhhhcCCCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHH-HHhhcCCCch
Q psy12242 252 LSWLRGTIEVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTK-IFTMAQLSDT 330 (498)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~ 330 (498)
+ +.++..++++++++++.+ .......+......+ ....+.|. +.+..|++..
T Consensus 227 ------------------~-----~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~-~~~~~lp~~l~~~~g~s~~ 279 (432)
T PRK10406 227 ------------------R-----ALKEAGSLKGLWRNRRAF---IMVLGFTAAGSLCFY-TFTTYMQKYLVNTAGMHAN 279 (432)
T ss_pred ------------------h-----hhcccccHHHHHhhHHHH---HHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCHH
Confidence 0 000122466677655332 222222222122223 33444454 4466799988
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccc
Q psy12242 331 AAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGS 410 (498)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (498)
+.+.......+...++.++.|+++||++||+.+.....+.++....+....... ......+....+...... ...+
T Consensus 280 ~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~ 355 (432)
T PRK10406 280 VASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNV---SSPYAAFGLVMCALLIVS-FYTS 355 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcC---CcHHHHHHHHHHHHHHHH-HHHH
Confidence 888888888888888889999999999999877655544333322221111111 111111111111111111 1123
Q ss_pred hhhhhhcccCCCChhhHHHHHHHHHHHH-HHHHHHHhHHHHHHhhh-hH-HHHHHHHHHHHHHHHHH
Q psy12242 411 IPWFLVSELFSQSARPLATSLAVSINWT-ANFIVGLGFLPIESIIH-GY-VFTIFAVLQAMFVLFIY 474 (498)
Q Consensus 411 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~-~~~~~~~~~~~l~~~~g-~~-~~~~~~~~~~~~~~~~~ 474 (498)
....+.+|.+|++.|+++.|+.+...+. .+...|.+.+.+ +..+ +. .+...+++.+++.+..+
T Consensus 356 ~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i~~~~~~ 421 (432)
T PRK10406 356 ISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAVVAFLVSL 421 (432)
T ss_pred HHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHHHHHH
Confidence 4556788999999999999999988765 344577777744 5555 33 33334444444444433
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-37 Score=296.93 Aligned_cols=400 Identities=14% Similarity=0.080 Sum_probs=269.3
Q ss_pred hHHHHHHHHHhhhhhccccccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHh
Q psy12242 27 GKLAFAISASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAA 106 (498)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~ 106 (498)
+.++.......++ .+...++...++...|.+.++++ .+..+. |++.+.+.+++.+++++
T Consensus 19 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g----------------~s~~~~----g~~~~~~~~~~~~~~~~ 77 (434)
T PRK11663 19 YWRRHILITMYLG-YALFYFTRKSFNAAMPEMLADLG----------------LSRSDI----GLLATLFYITYGVSKFV 77 (434)
T ss_pred HHHHHHHHHHHHH-HHHHHHhhhhHHHhhHHHHHhcC----------------CCHHHH----HHHHHHHHHHHHHHHhh
Confidence 3344454555555 56666777777778899988888 788888 99999999999999999
Q ss_pred HHHHHHhhccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHHH
Q psy12242 107 TGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQL 186 (498)
Q Consensus 107 ~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~ 186 (498)
.|+++||+|||+++.++.++.+++.++++++ ++++.+++.|++.|++.|...+...+++.|++|+++|++++++.+.
T Consensus 78 ~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~ 154 (434)
T PRK11663 78 SGIVSDRSNARYFMGIGLIATGIINILFGFS---SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNT 154 (434)
T ss_pred hhHHHhhcCCchhHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcccCCCCchhHHHHhhhHHHHHHH-hhcccccCChhhHHHhcCCHHHHHHHHHhhcCCchhHHHH
Q psy12242 187 VITISIVISQILGLGGLLGTADGWPLLLAFTLVPGIYQM-ITLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDEM 265 (498)
Q Consensus 187 ~~~~g~~~~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~-~~~~~~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~ 265 (498)
+.++|..+++++ .+.+.+..+||+.|++.+++.++.. +..+++||+|++. ...+.++.+ .+ .
T Consensus 155 ~~~~g~~~~~~~--~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~--~~~~~~~~~-------~~-----~- 217 (434)
T PRK11663 155 AHNVGGALIPLV--VGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAM--GLPSVGEWR-------HD-----A- 217 (434)
T ss_pred HHHHHHHHHHHH--HHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhc--CCCCccccc-------cc-----c-
Confidence 999999999984 3466667899999998877655443 3445678887541 101000000 00 0
Q ss_pred HHHHHhHHhhhcCCCchhhh-----HhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHH-hhcCCCchhHHHHHHHH
Q psy12242 266 DEMRAEYESIKLIPKVSLRE-----MFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIF-TMAQLSDTAAQWATLGM 339 (498)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~ 339 (498)
+ +.. ++++.++.+.++ .++++..+ ......+... ........+.|.++ ++.|++..+++......
T Consensus 218 ~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~ 288 (434)
T PRK11663 218 L---ELA-QQQEGAGLSRKEILTKYVLLNPYIW----LLSFSYVLVY-VVRAAINDWGNLYMSETLGVDLVTANSAVSMF 288 (434)
T ss_pred c---ccc-hhccccCCChhhhHHHHHhcChHHH----HHHHHHHHHH-HHHHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 0 000 000001112222 33444322 2222222212 22334444555555 66799999999999999
Q ss_pred HHHHHHHHHhhhhhhhcc--CCceehh-hhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhh
Q psy12242 340 GTMNVVMTLVSLVLVEIS--GRKTLLL-IGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLV 416 (498)
Q Consensus 340 ~~~~~~~~~~~g~l~dr~--g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (498)
.++.++++++.|++.||+ ++|+... .......+....+.... . ...... .......+++..+.........
T Consensus 289 ~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~-~~~~~~~g~~~~~~~~~~~~~~ 362 (434)
T PRK11663 289 ELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMP-F----ASYVMQ-AACFFTIGFFVFGPQMLIGMAA 362 (434)
T ss_pred HHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcc-c----ccHHHH-HHHHHHHHHHHhhHHHHHHHHH
Confidence 999999999999999998 3333322 21112222221111111 1 011111 1111112222222222334466
Q ss_pred cccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHhccCCCC
Q psy12242 417 SELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIHG-YVFTIFAVLQAMFVLFIYKKVPETKN 482 (498)
Q Consensus 417 ~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (498)
.|.+|++.|+++.|+.+...++|.+++|.+.|.+.|..++ ..+...+++.+++++..+...+++++
T Consensus 363 ~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 429 (434)
T PRK11663 363 AECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQAP 429 (434)
T ss_pred HhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhch
Confidence 7999999999999999999999999999999999998886 45566666666666555554544443
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-36 Score=291.57 Aligned_cols=374 Identities=18% Similarity=0.182 Sum_probs=270.0
Q ss_pred hHHHHHHHHHhhhhhccccccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHh
Q psy12242 27 GKLAFAISASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAA 106 (498)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~ 106 (498)
+.++.....+.++ .+.++++........|.+.++++ .++.+. +++.+++.+++.+++++
T Consensus 14 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~----------------~s~~~~----~~~~~~~~~~~~l~~~~ 72 (426)
T PRK12307 14 RPQKNALFSAWLG-YVFDGFDFMLIFYIMYLIKADLG----------------LTDMEG----AFLATAAFIGRPFGGAL 72 (426)
T ss_pred HHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHhC----------------CCHHHH----HHHHHHHHHHHHHHHHH
Confidence 4455555666677 78889999888888899999988 888888 99999999999999999
Q ss_pred HHHHHHhhccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHHH
Q psy12242 107 TGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQL 186 (498)
Q Consensus 107 ~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~ 186 (498)
.|+++||+|||+++.++.++.+++.++++++ ++++.++++|+++|++.+...+....++.|++|+++|+++.++...
T Consensus 73 ~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 149 (426)
T PRK12307 73 FGLLADKFGRKPLMMWSIVAYSVGTGLSGLA---SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVS 149 (426)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHH
Confidence 9999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcccCCCCchhHHHHhhhHHHHHHHhhcccccCChhhHHHhcCCHHHHHHHHHhhcCCchhHHHHH
Q psy12242 187 VITISIVISQILGLGGLLGTADGWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDEMD 266 (498)
Q Consensus 187 ~~~~g~~~~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 266 (498)
+..+|.++++.+. ..+.+..+||+.|++.++..++.+......||++++. +++.++ +.
T Consensus 150 ~~~lg~~~~~~l~--~~l~~~~~w~~~f~i~~~~~~~~~~~~~~~p~~~~~~--~~~~~~-----------~~------- 207 (426)
T PRK12307 150 GFGIGNIIAAYFM--PSFAEAYGWRAAFFVGLLPVLLVIYIRARAPESKEWE--EAKLSG-----------KG------- 207 (426)
T ss_pred HHhHHHHHHHHHH--HHHcccCCHHHHHHHHHHHHHHHHHHHHHCCCChHHH--Hhhhhc-----------cc-------
Confidence 9999999998843 3566778999999886554444333333356654331 000000 00
Q ss_pred HHHHhHHhhhcCCCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHH
Q psy12242 267 EMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVM 346 (498)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 346 (498)
++.+...+..+..++++++++.++....... ..+. .+........+.|.+.++.|.++.+.+.......++.+++
T Consensus 208 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g 282 (426)
T PRK12307 208 ---KHSQSAWSVFSLSMKGLFNRAQFPLTLCVFI-VLFS-IFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLG 282 (426)
T ss_pred ---cccccchhhhhHHHHHHHhhchHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 0000000001124567777765543322222 2221 1122223444566666777999888898888899999999
Q ss_pred HHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhh
Q psy12242 347 TLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARP 426 (498)
Q Consensus 347 ~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 426 (498)
.++.+++.||++||+....+..+..+..+.+.... . ..................+..+....++.|.+|++.|+
T Consensus 283 ~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g 356 (426)
T PRK12307 283 NIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIP---Q---DNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRG 356 (426)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc---c---ccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHh
Confidence 99999999999999988777666555443332211 1 11111111111111222233345556778999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhH
Q psy12242 427 LATSLAVSINWTANFIVGLGFLPIESIIHGY 457 (498)
Q Consensus 427 ~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~~ 457 (498)
+++|+.+...++++.++|.+.|.+.+..+..
T Consensus 357 ~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~ 387 (426)
T PRK12307 357 LGTGLIYNLAATSGTFNSMAATWLGITMGLG 387 (426)
T ss_pred hhhhHHHHHHhHHHHHHHHHHHHHHHcccHH
Confidence 9999999999999999999999999988753
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-36 Score=289.37 Aligned_cols=364 Identities=16% Similarity=0.196 Sum_probs=271.8
Q ss_pred chHHHHHHHHHhhhhhccccccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHH
Q psy12242 26 NGKLAFAISASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGA 105 (498)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~ 105 (498)
.+++|....++.+. .+.++++....+...|.+.++++ .++.+. |++.+.+.++..++++
T Consensus 10 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----------------~s~~~~----g~~~~~~~~~~~~~~~ 68 (406)
T PRK11551 10 SSRLALTIGLCFLV-ALLEGLDLQSAGVAAPRMAQEFG----------------LDVAQM----GWAFSAGILGLLPGAL 68 (406)
T ss_pred hhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhC----------------CCHHHH----HHHHHHHHHHHHHHHH
Confidence 34677777777777 78899999988989999999988 888888 9999999999999999
Q ss_pred hHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHH
Q psy12242 106 ATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQ 185 (498)
Q Consensus 106 ~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~ 185 (498)
+.|+++||+|||+++..+.++..++.+++.++ ++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+
T Consensus 69 ~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 145 (406)
T PRK11551 69 LGGRLADRIGRKRILIVSVALFGLFSLATAQA---WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMY 145 (406)
T ss_pred HHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 99999999999999999999999999999998 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCcccCCCCchhHHHHhhhHHHHHHH-hhcccccCChhhHHHhcCCHHHHHHHHHhhcCCchhHHH
Q psy12242 186 LVITISIVISQILGLGGLLGTADGWPLLLAFTLVPGIYQM-ITLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDE 264 (498)
Q Consensus 186 ~~~~~g~~~~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~-~~~~~~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~ 264 (498)
.+..+|..+++.++ ..+.+..+||+.|++.++..++.. +...++||+|++. .+++++++.
T Consensus 146 ~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~---------------- 206 (406)
T PRK11551 146 CGVPFGGALASVIG--VLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFA-QAAGAGKQR---------------- 206 (406)
T ss_pred HHHHHHHHHHHHHH--HHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHH-hccCcchhh----------------
Confidence 99999999999854 366677899999998766555444 3445678887542 111100000
Q ss_pred HHHHHHhHHhhhcCCCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHH
Q psy12242 265 MDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNV 344 (498)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 344 (498)
+...+..++++..++. ....... +...........+.|.+.++.|+++.+.+.......++.+
T Consensus 207 ---------------~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ 269 (406)
T PRK11551 207 ---------------APVLRALFGEGRATAT-LLLWISY-FFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGA 269 (406)
T ss_pred ---------------hhhHHHHhhhhhhhHH-HHHHHHH-HHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHH
Confidence 0001111111111111 1111111 1111223344556677777789999999999999999999
Q ss_pred HHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCCh
Q psy12242 345 VMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSA 424 (498)
Q Consensus 345 ~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 424 (498)
++.++.+++.||++||+.+..+.....++...+.... ..+ .........++...+..+....+..|.+|++.
T Consensus 270 ~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~ 341 (406)
T PRK11551 270 LGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAP-------SFA-GMLLAGFAAGLFVVGGQSVLYALAPLFYPTQV 341 (406)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcC-------cHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHcchhh
Confidence 9999999999999999888775555554444333211 111 11222223333333445667778899999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhH
Q psy12242 425 RPLATSLAVSINWTANFIVGLGFLPIESIIHGY 457 (498)
Q Consensus 425 ~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~~ 457 (498)
|+++.|+.+....++..++|.+.|.+.+..+.+
T Consensus 342 ~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~ 374 (406)
T PRK11551 342 RGTGVGAAVAVGRLGSMAGPLLAGQLLALGRST 374 (406)
T ss_pred hhhhhhHHHHhhhHHHHHHhhhHhhhhccCCch
Confidence 999999999999999999999999999876543
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=288.24 Aligned_cols=386 Identities=15% Similarity=0.147 Sum_probs=272.6
Q ss_pred cchHHHHHHHHHhhhhhccccccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHH
Q psy12242 25 LNGKLAFAISASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGG 104 (498)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~ 104 (498)
.++++|.......++ .+.++++....+...|.+.++++ .++.+. |++.+++.++..+++
T Consensus 6 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~----------------~s~~~~----g~~~~~~~~~~~~~~ 64 (405)
T TIGR00891 6 LTRAQWNAFSAAWLG-WLLDAFDFFLVALVLAEVAGEFG----------------LTTVDA----ASLISAALISRWFGA 64 (405)
T ss_pred CCcccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhC----------------CChhhH----HHHHHHHHHHHHHHH
Confidence 455666777777788 78899999999999999999988 888888 999999999999999
Q ss_pred HhHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHH
Q psy12242 105 AATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVY 184 (498)
Q Consensus 105 ~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~ 184 (498)
++.|+++||+|||+++..+.++.+++.++++++ ++++.+++.|++.|++.+...+...+++.|++|+++|+++.++.
T Consensus 65 ~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 141 (405)
T TIGR00891 65 LMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFA---PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLL 141 (405)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHH
Confidence 999999999999999999999999999999998 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCcccCCCC--chhHHHHhhhHHHHHHHhhcccccCChhhHHHhcCCHHHHHHHHHhhcCCchhH
Q psy12242 185 QLVITISIVISQILGLGGLLGTAD--GWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVH 262 (498)
Q Consensus 185 ~~~~~~g~~~~~~i~~~~~~~~~~--~wr~~f~~~~~~~~~~~~~~~~~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~ 262 (498)
..+..+|..+++.++. .+.+.. +||+.|++.++..++.++....+||+|++. .+++++++..+..++...+...
T Consensus 142 ~~~~~~g~~~~~~l~~--~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~- 217 (405)
T TIGR00891 142 ISGYAVGAVVAAQVYS--LVVPVWGDGWRALFFISILPIIFALWLRKNIPEAEDWK-EKHAGKALVRTMVDILYGGEHR- 217 (405)
T ss_pred HHHHHHHHHHHHHHHH--HHHHhcCccHHHHHHHHHHHHHHHHHHHHhCCCChhHH-HHhhhhhhhhhHHHHHhccchh-
Confidence 9999999999998542 443333 499999987776666666666788887553 1111111111111111100000
Q ss_pred HHHHHHHHhHHhhhcCCCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHHhhcCCCchhHHHHHHHHHHH
Q psy12242 263 DEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTMAQLSDTAAQWATLGMGTM 342 (498)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 342 (498)
.+.. .+......++. .++.+...........+..........++++++.++.|++..+.+.......++
T Consensus 218 -----~~~~----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~ 286 (405)
T TIGR00891 218 -----IANI----VMTLAAAMVQS--AGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIG 286 (405)
T ss_pred -----hhhh----hhhhhHHhhhh--hhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 0000 00000001111 111111112222222222222222233444555567899999999999999999
Q ss_pred HHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCC
Q psy12242 343 NVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQ 422 (498)
Q Consensus 343 ~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 422 (498)
.+++.++.+++.||++||+.+..+.....+....+... . ..................+..+....+..|.+|+
T Consensus 287 ~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (405)
T TIGR00891 287 AIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAI---G----ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPT 359 (405)
T ss_pred HHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHh---C----CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCc
Confidence 99999999999999999998877665543322222111 1 1111112222222333344446666788899999
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh
Q psy12242 423 SARPLATSLAVSINWTANFIVGLGFLPIESIIHG 456 (498)
Q Consensus 423 ~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~ 456 (498)
+.|++++|+.+...+++..++|.+.|.+.|..|.
T Consensus 360 ~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~ 393 (405)
T TIGR00891 360 DQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDE 393 (405)
T ss_pred chhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999884
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=298.44 Aligned_cols=397 Identities=13% Similarity=0.080 Sum_probs=262.8
Q ss_pred HHHHHHHHhhhhhccccccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhHH
Q psy12242 29 LAFAISASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATG 108 (498)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g 108 (498)
.+.+.....++ ++....++..++...|.+.++++ +++.+. |++.+.+.+++.+++++.|
T Consensus 27 ~~~i~~~~~~~-~~~~y~~r~~~~~~~~~i~~~~~----------------~s~~~~----g~~~s~~~~~~~~~~~~~G 85 (467)
T PRK09556 27 FMQSYLVVFIG-YLTMYLIRKNFKAAQNDMISTYG----------------LSTTEL----GMIGLGFSITYGVGKTLVG 85 (467)
T ss_pred HHHHHHHHHHH-HHHHHHHhcChhhhhHHHHHhcC----------------CCHHHH----HHHHHHHHHHHHHHHhhhh
Confidence 44455566666 67777889989999999999998 888888 9999999999999999999
Q ss_pred HHHHhhccchhhHHHHHHHHHHHHHHhhhh--ccchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHHH
Q psy12242 109 YVAERFGRKGGLLINNVFVVLAALLQGFSK--AFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQL 186 (498)
Q Consensus 109 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~ 186 (498)
+++||+|||+++..+.++++++.++.++.. ..++++.+++.|+++|++.+...+...++++||+|+++|++++++...
T Consensus 86 ~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~ 165 (467)
T PRK09556 86 YYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNI 165 (467)
T ss_pred hHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeec
Confidence 999999999999998888887777665521 117999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcccCC---CCchhHHHHhhhHHHHHHH-hhcccccCChhhHHHhcCCHHHHHHHHHhhcCCchhH
Q psy12242 187 VITISIVISQILGLGGLLGT---ADGWPLLLAFTLVPGIYQM-ITLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVH 262 (498)
Q Consensus 187 ~~~~g~~~~~~i~~~~~~~~---~~~wr~~f~~~~~~~~~~~-~~~~~~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~ 262 (498)
+.++|.++++++.. .... ..+||..|.+.+++.++.. +.+++.+|+|+.. ...+.++ . ..... .
T Consensus 166 ~~~lG~~l~~~i~~--~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~--~~~~~~~---~---~~~~~--~ 233 (467)
T PRK09556 166 SHNLGGAGAGGVAL--WGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEEL--GWGKAEE---I---FGEPI--S 233 (467)
T ss_pred ccchhhhHHHHHHH--HHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhc--CCCChhh---c---ccCcc--c
Confidence 99999999988642 2222 1369999888776665544 3444567776321 1111111 0 00000 0
Q ss_pred HHHHHHHHhHHhhhcCCCch-hhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHH-hhcCCCchhHHHHHHHHH
Q psy12242 263 DEMDEMRAEYESIKLIPKVS-LREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIF-TMAQLSDTAAQWATLGMG 340 (498)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~ 340 (498)
.+ ++..+.++...... .+..++++.+|. .....++.... ......+.|.++ +.+|++..+++.......
T Consensus 234 ~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~-~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~ 304 (467)
T PRK09556 234 EE----DKETESTDMTKWQIFVEYVLKNPVIWL----LCFANIFLYIV-RIGIDNWSPVYAFQELGFSKEDAINTFTLFE 304 (467)
T ss_pred hh----hhccccccCcHHHHHHHHHHcChHHHH----HHHHHHHHHHH-HHHHHHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence 00 00000000000011 122556654432 22222222222 233555566554 668999999999988899
Q ss_pred HHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccC
Q psy12242 341 TMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELF 420 (498)
Q Consensus 341 ~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (498)
++.+++.++.|+++||++||+..........+....+.. ...+ ......+. .+..+....+..........|.+
T Consensus 305 ~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~-~~~~G~~~~~~~~~~~~~~~~~~ 378 (467)
T PRK09556 305 IGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVY--QHAT---SEYMYLAS-LFALGFLVFGPQLLIGVAAVGFV 378 (467)
T ss_pred HHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHH--HhcC---cHHHHHHH-HHHHHHHHhhHHHHHHHHHHhhc
Confidence 999999999999999999998765544333332221111 1111 11111122 22222222222222234666999
Q ss_pred CCChhhHHHHHHHHHHHH-HHHHHHHhHHHHHH------------hhhh-HHHHHHHHHHHHHHHHH
Q psy12242 421 SQSARPLATSLAVSINWT-ANFIVGLGFLPIES------------IIHG-YVFTIFAVLQAMFVLFI 473 (498)
Q Consensus 421 p~~~~~~~~g~~~~~~~~-~~~~~~~~~~~l~~------------~~g~-~~~~~~~~~~~~~~~~~ 473 (498)
|++.+|++.|+.+...++ +.+++|.+.|.+.| ..++ ..+.+..++.+++.+..
T Consensus 379 p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 445 (467)
T PRK09556 379 PKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLM 445 (467)
T ss_pred chhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHH
Confidence 999999999999999997 77999999999999 4454 34555555555544443
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=283.18 Aligned_cols=369 Identities=15% Similarity=0.105 Sum_probs=262.8
Q ss_pred HHHHhhhhhccccccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy12242 33 ISASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAE 112 (498)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~d 112 (498)
.+.+.+. .+....+.....+.+|.+.++++ .++.+. |++.+.+.+++.++++++|+++|
T Consensus 11 ~~~l~~~-~~~~~~~~~~~~~~~~~l~~~~~----------------~s~~~~----g~~~~~~~~~~~~~~~~~g~l~d 69 (390)
T PRK03545 11 VVTLALA-AFIFNTTEFVPVGLLSDIAQSFH----------------MQTAQV----GLMLTIYAWVVALMSLPLMLLTS 69 (390)
T ss_pred HHHHHHH-HHHHHhHHHHHHcchHHHHhHcC----------------CCHHHH----HHHHHHHHHHHHHHHHHHHHHHc
Confidence 3333443 33333333344456788999988 888888 99999999999999999999999
Q ss_pred hhccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHHHHHHHHH
Q psy12242 113 RFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISI 192 (498)
Q Consensus 113 r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~ 192 (498)
|+|||+++..+.++.++++++++++ +|++.++++|+++|++.+...+...+++.|++|+++|++++++...+.++|.
T Consensus 70 r~g~r~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~ 146 (390)
T PRK03545 70 NVERRKLLIGLFVLFIASHVLSALA---WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAM 146 (390)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcccCCCCchhHHHHhhhHHHHHHHhh-cccccCChhhHHHhcCCHHHHHHHHHhhcCCchhHHHHHHHHHh
Q psy12242 193 VISQILGLGGLLGTADGWPLLLAFTLVPGIYQMIT-LPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDEMDEMRAE 271 (498)
Q Consensus 193 ~~~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 271 (498)
.++|+++ +.+.+..+||+.|++.+++.++..+. ..++||.|+. ++
T Consensus 147 ~ig~~l~--~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~-----~~--------------------------- 192 (390)
T PRK03545 147 VLGLPLG--RVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPSE-----HS--------------------------- 192 (390)
T ss_pred HHHhhHH--HHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCC-----Cc---------------------------
Confidence 9999954 46667789999999988776655433 3445654310 00
Q ss_pred HHhhhcCCCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhh
Q psy12242 272 YESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSL 351 (498)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 351 (498)
.+.++.++.++++.++.......... ........+..+++.+..|.+..+++.......++.+++.++.+
T Consensus 193 ------~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g 262 (390)
T PRK03545 193 ------GSLKSLPLLFRRPALVSLYLLTVVVV----TAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFS 262 (390)
T ss_pred ------chHHHHHHHHhCcHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 00012345666665443222221111 11222334445555566799999999999999999999999999
Q ss_pred hhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHH
Q psy12242 352 VLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSL 431 (498)
Q Consensus 352 ~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~ 431 (498)
++.||++||... .+..+..++...+.... ...+.... .....+.......+.......|..| +.+++++|+
T Consensus 263 ~l~dr~~~~~~~-~~~~~~~~~~~~l~~~~------~~~~~~~~-~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~ 333 (390)
T PRK03545 263 RLGNRHPSGFLL-IAIALLLVCLLLLLPAA------NSEWHLSV-LSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMAL 333 (390)
T ss_pred HHhhccchhHHH-HHHHHHHHHHHHHHHHh------chHHHHHH-HHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHH
Confidence 999999987543 33333333333222111 11111222 2222222233334445566667766 578999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHhcc
Q psy12242 432 AVSINWTANFIVGLGFLPIESIIHG-YVFTIFAVLQAMFVLFIYKKVP 478 (498)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~l~~~~g~-~~~~~~~~~~~~~~~~~~~~~~ 478 (498)
.+...++|..++|.+.|.+.|..+. ..+...+++.+++.++.+...+
T Consensus 334 ~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
T PRK03545 334 FSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIFR 381 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999999999999999999886 5566666666666666555443
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=286.38 Aligned_cols=383 Identities=12% Similarity=0.102 Sum_probs=261.6
Q ss_pred HHHHHHHHhhhhhccccccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhHH
Q psy12242 29 LAFAISASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATG 108 (498)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g 108 (498)
+|....+++++ ++.+++|...++...|.++++++ .++.+. |++.+++.+++++++++.|
T Consensus 6 ~~~~~~~~~~~-~~~~~~d~~~~~~~~~~l~~~~~----------------~s~~~~----g~~~s~~~~~~~~~~~~~g 64 (412)
T TIGR02332 6 FRRLIIFLFIL-FIFSFLDRINIGFAGLTMGKDLG----------------LSATMF----GLAATLFYAAYVICGIPSN 64 (412)
T ss_pred hhHHHHHHHHH-HHHHHhhhhhHHHHHHhhHhhcC----------------CCHHHH----HHHHHHHHHHHHHHHhhHH
Confidence 45566666677 78889999999999999999988 888888 9999999999999999999
Q ss_pred HHHHhhccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHHHHH
Q psy12242 109 YVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVI 188 (498)
Q Consensus 109 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~ 188 (498)
+++||+|||+++..+++++.+++++++++ +|++.+++.|+++|++.+...+....++.|++|+++|++++++++.+.
T Consensus 65 ~l~dr~G~r~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~ 141 (412)
T TIGR02332 65 IMLAIIGARRWIAGIMVLWGIASTATMFA---TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAM 141 (412)
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcccC------CCCchhHHHHhhhHHHHHHH-hhcccccCChhhHHHhcCCHHHHHHHHHhhcCCchh
Q psy12242 189 TISIVISQILGLGGLLG------TADGWPLLLAFTLVPGIYQM-ITLPFCPESPKYILLSKGQELEAQRALSWLRGTIEV 261 (498)
Q Consensus 189 ~~g~~~~~~i~~~~~~~------~~~~wr~~f~~~~~~~~~~~-~~~~~~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~ 261 (498)
++|.+++++++. .+. +..+||+.|++.+++.++.. +.++++||+|+.. +.-.+++.+...++.+.+...
T Consensus 142 ~~g~~~~~~~~~--~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~--~~l~~~~~~~~~~~~~~~~~~ 217 (412)
T TIGR02332 142 PVTMALGLILSG--YILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKA--KWLDEEDKKALKEMIDNDQLT 217 (412)
T ss_pred HHHHHHHHHHHH--HHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccC--CCCCHHHHHHHHHHHHhcccc
Confidence 999999998542 322 34699999999877766544 4556789988420 000111111111111100000
Q ss_pred HHHHHHHHHhHHhhhcCCCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHHhhc--CCCchhHHHHHHHH
Q psy12242 262 HDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTMA--QLSDTAAQWATLGM 339 (498)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~ 339 (498)
.++ .++..++.+...+..+++++ ++. .+......+ .....+..+..+.|.++++. +.+..+++......
T Consensus 218 ~~~---~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~-~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~ 288 (412)
T TIGR02332 218 LEQ---PEGAFAHAAMPQRSMLREIF-TPA----IMLYTLAYF-CLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIP 288 (412)
T ss_pred ccc---cccccccccccHHHHHHHhc-ChH----HHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHH
Confidence 000 00000000000011223332 232 222222222 22233445666777777664 66778888889999
Q ss_pred HHHHHHHHHhhhhhhhccCCceeh-hhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcc
Q psy12242 340 GTMNVVMTLVSLVLVEISGRKTLL-LIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSE 418 (498)
Q Consensus 340 ~~~~~~~~~~~g~l~dr~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (498)
.++.+++.++.++++||+++|+.. ........+.. .+.. .. . ..........+. ........+.......|
T Consensus 289 ~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~-~~~~--~~-~---~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~ 360 (412)
T TIGR02332 289 QFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGW-LLAS--AT-D---HNLIQLLGIIMA-SMGSFSAMAIFWTTPDQ 360 (412)
T ss_pred HHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHH-HHHH--hc-C---CHHHHHHHHHHH-HHHhhhhhhHHHhhccc
Confidence 999999999999999999977653 33332333222 1111 11 1 111111111111 11111122334455567
Q ss_pred cCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh
Q psy12242 419 LFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIHG 456 (498)
Q Consensus 419 ~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~ 456 (498)
.+|++.|++++|+.+...++|++++|.+.|.+.|..|.
T Consensus 361 ~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~ 398 (412)
T TIGR02332 361 SISLQARAIAIAVINATGNIGSALSPFLIGILKDATGS 398 (412)
T ss_pred ccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCC
Confidence 89999999999999999999999999999999998763
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=281.23 Aligned_cols=396 Identities=12% Similarity=0.091 Sum_probs=252.9
Q ss_pred HHHHHHHhhhhhccccccccccCCcHHH-HHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhHH
Q psy12242 30 AFAISASALGSSFQHGYNTGVFNAPQKL-ISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATG 108 (498)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g 108 (498)
+.......++ .+.+++|...++...|. +.+++.+. .++.+.........++.+++..+++++.|
T Consensus 21 ~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~g~~~~G 85 (438)
T PRK09952 21 RRAALGSFAG-AVVDWYDFLLYGITAALVFNREFFPQ--------------VSPAMGTLAAFATFGVGFLFRPLGGVVFG 85 (438)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCC--------------CCcHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3455566667 78899999988776653 45444211 34432111112223456677889999999
Q ss_pred HHHHhhccchhhHHHHHHHHHHHHHHhhhhccchhH--------HHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhh
Q psy12242 109 YVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYE--------MIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAV 180 (498)
Q Consensus 109 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~ 180 (498)
+++||+|||+++..+.+++++++++++++ ++++ .++++|+++|++.|..++....++.|++|+++|++.
T Consensus 86 ~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~ 162 (438)
T PRK09952 86 HFGDRLGRKRMLMLTVWMMGIATALIGLL---PSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFY 162 (438)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHH
Confidence 99999999999999999999999999999 7776 588899999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHhcC--ccc----CCCCchhHHHHhhhHHHHHHHhhcccccCChhhHHHhcCCHHHHHHHHHh
Q psy12242 181 GTVYQLVITISIVISQILGLG--GLL----GTADGWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQRALSW 254 (498)
Q Consensus 181 ~~~~~~~~~~g~~~~~~i~~~--~~~----~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~l~~~~~~~~~a~~~~~~ 254 (498)
.+....+..+|.+++..+... ... ....+||++|++.+++.++........||+|++. .++++.+
T Consensus 163 ~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~-~~~~~~~-------- 233 (438)
T PRK09952 163 SSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFE-QQQHEQA-------- 233 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHH-HHHhhcc--------
Confidence 999999999999888764210 011 1357999999998877666555555678887653 1100000
Q ss_pred hcCCchhHHHHHHHHHhHHhhhcCCCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHHhhcCCCchhHHH
Q psy12242 255 LRGTIEVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTMAQLSDTAAQW 334 (498)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 334 (498)
+ ++.+....+.++++++.+ .......+...+..+....+.+++..+..|++......
T Consensus 234 -------------------~-~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~ 290 (438)
T PRK09952 234 -------------------A-AKKRIPVIEALLRHPGAF---LKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLN 290 (438)
T ss_pred -------------------c-ccccCCHHHHHHHchHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 0 000001112244444332 22222222222222333334444444667888766555
Q ss_pred HHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhh
Q psy12242 335 ATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWF 414 (498)
Q Consensus 335 ~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (498)
.....++..+++.++.|+++||++||+.+..+.++..+....+...... . .....++...+...+......+..++
T Consensus 291 ~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~l~~~~~~~~~~~~~~ 366 (438)
T PRK09952 291 IGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEA-Q---SIFWIVFFSIMLANIAHDMVVCVQQP 366 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHc-C---ChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556677788889999999999999998876665544433322221111 1 11111111122222222222355677
Q ss_pred hhcccCCCChhhHHHHHHHHHHH-HHHHHHHHhHHHHHHhhh--h-HHHHHHHHHHHHHHHHHHHhccCC
Q psy12242 415 LVSELFSQSARPLATSLAVSINW-TANFIVGLGFLPIESIIH--G-YVFTIFAVLQAMFVLFIYKKVPET 480 (498)
Q Consensus 415 ~~~~~~p~~~~~~~~g~~~~~~~-~~~~~~~~~~~~l~~~~g--~-~~~~~~~~~~~~~~~~~~~~~~~~ 480 (498)
+..|.+|.+.|+++.|+.+.... +++.++|.+.+.+.+..+ + ..+...+++.+++.+.. +..+|+
T Consensus 367 ~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~-~~~~~~ 435 (438)
T PRK09952 367 MFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTA-LLMKDN 435 (438)
T ss_pred HHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH-HHcccc
Confidence 88999999999999999776654 789999999999988653 3 23444444444444443 345553
|
|
| >KOG0253|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=256.58 Aligned_cols=423 Identities=16% Similarity=0.177 Sum_probs=315.0
Q ss_pred CcchHHHHHHHHHhhhhhccccccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHH
Q psy12242 24 GLNGKLAFAISASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIG 103 (498)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~ 103 (498)
+..+.++...+....+ +..+....-..+...|.+.+..+ .+..|. +++......|..++
T Consensus 71 gfgrfq~yl~~~ag~g-wmad~m~~m~~s~i~~~l~~~w~----------------~s~~q~----~llt~~v~~gmllg 129 (528)
T KOG0253|consen 71 GFGRFQWYLFFVAGMG-WMADAMEMMLLSLILPALDEVWG----------------PSEGQA----PLLTLSVFLGMLVG 129 (528)
T ss_pred CcccchhhHHHHhhhH-HHHHHHHHHHHHHHHHHHHhhhc----------------hhhhhh----hHHHHHHHhhhhhh
Confidence 3456777777777777 56665555555555666666655 566666 89999999999999
Q ss_pred HHhHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhH
Q psy12242 104 GAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTV 183 (498)
Q Consensus 104 ~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~ 183 (498)
+..||.++|++|||+.+.+.....++...+.+.+ +|+..+.+.|.+.|+|.|+ .|...++-.|..|..+|...+-.
T Consensus 130 a~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~s---pnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~ 205 (528)
T KOG0253|consen 130 AMVWGLSADTIGRRKGFNLTFLVTGVFGVISGAS---PNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVM 205 (528)
T ss_pred hhhhheehhhhhcchhhhhhHHHHHHHHHhhcCC---CCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhH
Confidence 9999999999999999999999999999999999 9999999999999999998 89899999999999999887766
Q ss_pred HHHHHHHHHHHHHHHhcCcccCCCCchhHHHHhhhHHHHHHHhhcccccCChhhHHHhcCCHHHHHHHHHhhcCCchhH-
Q psy12242 184 YQLVITISIVISQILGLGGLLGTADGWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVH- 262 (498)
Q Consensus 184 ~~~~~~~g~~~~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~- 262 (498)
. ..+.+|.+....+.. ......||||.......+..+...+.+++|||||+. ..++++++|.+.++++...+..+
T Consensus 206 ~-~~waig~v~ea~law--~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~-~~~G~~~kAletL~kiArmNg~ql 281 (528)
T KOG0253|consen 206 S-FFWAIGQVFEALLAW--GVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFY-LAKGDDYKALETLHKIARMNGKQL 281 (528)
T ss_pred H-HHHHHHHHHHHHHHH--HHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchh-hhcCChHHHHHHHHHHHHhcCCCC
Confidence 6 899999999998654 566678999999988888888888888999999998 88999999988888775432110
Q ss_pred --------------HHHHHHHHhHHhhhcCCCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHHhhc---
Q psy12242 263 --------------DEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTMA--- 325 (498)
Q Consensus 263 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 325 (498)
+|..+..+......++...+..+++. |.++++.+.....++...+..+..+.........+.
T Consensus 282 plgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLls-p~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~ 360 (528)
T KOG0253|consen 282 PLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLS-PKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACP 360 (528)
T ss_pred CcceeeeehhhhhhhhhhchhhhhhccccccccchHhhcC-hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccc
Confidence 00111111111112223345556665 557777777777887777666555444332222110
Q ss_pred ----------------CCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhh
Q psy12242 326 ----------------QLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVM 389 (498)
Q Consensus 326 ----------------g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (498)
..+......-..+..+..++|.++.+++.||+|||+.+...++++++..+.+.... .
T Consensus 361 ~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~-------~ 433 (528)
T KOG0253|consen 361 LYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCK-------T 433 (528)
T ss_pred cchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhc-------C
Confidence 11222223345677889999999999999999999999999888888777665432 1
Q ss_pred HHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHH
Q psy12242 390 SIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIHGYVFTIFAVLQAMF 469 (498)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~ 469 (498)
........+..- .+..+.....++|..|++|+..|+++.|......++|+++.|.+. ...+...+.+..+++++++++
T Consensus 434 rn~~tvllf~ar-afisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA-~~~e~s~sl~i~vy~~~~ila 511 (528)
T KOG0253|consen 434 RNAYTVLLFTAR-AFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA-MRAELSTSLPIFVYGALFILA 511 (528)
T ss_pred cchhHHHHHHHH-HHHhchheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH-HHhccceeehHHHHHHHHHHH
Confidence 112222223333 333444577889999999999999999999999999999999988 444444456788888888888
Q ss_pred HHHHHHhccCCCCCCH
Q psy12242 470 VLFIYKKVPETKNKTQ 485 (498)
Q Consensus 470 ~~~~~~~~~~~~~~~~ 485 (498)
.+...++--|+|+|..
T Consensus 512 gIavcffPiEtkGR~l 527 (528)
T KOG0253|consen 512 GIAVCFFPIETKGRSL 527 (528)
T ss_pred HHHheeeeeccCCCCC
Confidence 8888887789998863
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-34 Score=277.44 Aligned_cols=361 Identities=16% Similarity=0.199 Sum_probs=237.6
Q ss_pred HHHHHhhhhhccccccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHH-----HHHHHHHHHHHh
Q psy12242 32 AISASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVS-----IFCAGGIIGGAA 106 (498)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s-----~~~~~~~~~~~~ 106 (498)
......++ .+.+.+|...++...|.+.++++ .++.+.. ++..+ ...++..+++++
T Consensus 16 ~~~~~~~~-~~~~~~d~~~~~~~~~~i~~~~~----------------~~~~~~~---~~~~~~~~~~~~~l~~~ig~~~ 75 (434)
T PRK15075 16 AILRVTSG-NFLEMFDFFLFGFYATAIAKTFF----------------PAGNEFA---SLMLTFAVFGAGFLMRPLGAIV 75 (434)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhC----------------CCCCchH---HHHHHHHHHHHHHHHhhhHHHH
Confidence 46666777 89999999999999999999987 5555431 22222 223444578999
Q ss_pred HHHHHHhhccchhhHHHHHHHHHHHHHHhhhhccchhH--------HHHHHHHHHHhhhhhhhcchhhhhhccCcccchh
Q psy12242 107 TGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYE--------MIILGRFLIGINSGLNAGLAPMYLAEISPVHLRG 178 (498)
Q Consensus 107 ~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~ 178 (498)
.|+++||+|||+.++.+..++++++++++++ ++++ .++++|+++|++.+...+....+++|++|+++|+
T Consensus 76 ~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg 152 (434)
T PRK15075 76 LGAYIDRVGRRKGLIVTLSIMASGTLLIAFV---PGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKG 152 (434)
T ss_pred HHHHhhhhchHHHHHHHHHHHHHHHHHHHhC---CcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccch
Confidence 9999999999999999999999999999999 7776 4688999999999999998999999999999999
Q ss_pred hhHhHHHHHHHHHHHHHHHHhcC--ccc----CCCCchhHHHHhhhHHHHHHHhhcccccCChhhHHHhcCCHHHHHHHH
Q psy12242 179 AVGTVYQLVITISIVISQILGLG--GLL----GTADGWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQRAL 252 (498)
Q Consensus 179 ~~~~~~~~~~~~g~~~~~~i~~~--~~~----~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~l~~~~~~~~~a~~~~ 252 (498)
+++++...+.++|..+++.++.. ..+ .+..+||++|++.++...+........||++++. +
T Consensus 153 ~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~--~----------- 219 (434)
T PRK15075 153 FYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFL--A----------- 219 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHH--H-----------
Confidence 99999988888887777764321 111 2467999999986544333222222234432110 0
Q ss_pred HhhcCCchhHHHHHHHHHhHHhhhcCCCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHHh-hcCCCchh
Q psy12242 253 SWLRGTIEVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFT-MAQLSDTA 331 (498)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~ 331 (498)
+ +++.+.+..+++..+++ +..+..+...+. ....+.....+.|.+++ ..|++..+
T Consensus 220 -----------------~---~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~p~~l~~~~g~~~~~ 275 (434)
T PRK15075 220 -----------------R---KHRPSMREIFRSLAANW---RIVLAGMLMVAM-TTVSFYLITVYTPTFGKTVLHLSAAD 275 (434)
T ss_pred -----------------h---hhccccccHHHHHHHhH---HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 0 00000111122222222 122222222222 22334456666676665 47999888
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccch
Q psy12242 332 AQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSI 411 (498)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (498)
.++......++.+++.++.|+++||++||+....+..+..+......... .... .... ......+...+. ....+.
T Consensus 276 ~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~-~~~~~~~~~~~~-g~~~~~ 351 (434)
T PRK15075 276 SLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWL-VAAP-SFAR-MLAVELWLSFLY-GSYNGA 351 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH-HcCC-chHH-HHHHHHHHHHHH-HHHHhh
Confidence 88888888999999999999999999999887665443322211111111 1111 1111 111111111111 122344
Q ss_pred hhhhhcccCCCChhhHHHHHHHHHHHH-HHHHHHHhHHHHHHhhhh
Q psy12242 412 PWFLVSELFSQSARPLATSLAVSINWT-ANFIVGLGFLPIESIIHG 456 (498)
Q Consensus 412 ~~~~~~~~~p~~~~~~~~g~~~~~~~~-~~~~~~~~~~~l~~~~g~ 456 (498)
...+..|.+|++.|+++.|+.+..... ++.++|.+.|.+.|..++
T Consensus 352 ~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~ 397 (434)
T PRK15075 352 MVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGD 397 (434)
T ss_pred HHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCC
Confidence 456778999999999999997665554 588899999999998774
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=270.78 Aligned_cols=358 Identities=9% Similarity=0.044 Sum_probs=257.4
Q ss_pred cccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhhHHHHHHHH
Q psy12242 49 GVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVV 128 (498)
Q Consensus 49 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~ 128 (498)
..+++..|.++++++ +++++. |++.+.+.+++.+++++.|+++||+|||+++..+..+++
T Consensus 26 ~~~~~~lp~i~~~~~----------------~s~~~~----g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~ 85 (393)
T PRK09705 26 TSVGPLLPQLRQASG----------------MSFSVA----ALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIA 85 (393)
T ss_pred hccchhHHHHHHHhC----------------CCHHHH----HHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHH
Confidence 446788899999999 898888 999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHHHHHHHHHHHHHHHhcCcccCCC-
Q psy12242 129 LAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLLGTA- 207 (498)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~- 207 (498)
++.++++++ +|++.++++|+++|++.+...+....++.|++| ++|+++++++..+...|..+++.++ ..+.++
T Consensus 86 ~~~~~~~~a---~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~--~~l~~~~ 159 (393)
T PRK09705 86 VGALMRELY---PQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAIT--PWLVQHS 159 (393)
T ss_pred HHHHHHHHC---cchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHH--HHHHHhc
Confidence 999999999 999999999999999999999999999999997 8899999999999888988888853 344444
Q ss_pred CchhHHHHhhhHHHHHHHhhcccc-cCChhhHHHhcCCHHHHHHHHHhhcCCchhHHHHHHHHHhHHhhhcCCCchhhhH
Q psy12242 208 DGWPLLLAFTLVPGIYQMITLPFC-PESPKYILLSKGQELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIPKVSLREM 286 (498)
Q Consensus 208 ~~wr~~f~~~~~~~~~~~~~~~~~-~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (498)
.+||+.+.+.++..++.++.++.. ++.|+ ++ + + ++...++.
T Consensus 160 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~--------------------------~--~--~~~~~~~~ 201 (393)
T PRK09705 160 ETWYQTLAWWALPAVVALFAWWWQSAREVA--------SS--------------------------H--K--TTTTPVRV 201 (393)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcCCCc--------cc--------------------------c--C--CCcCCccc
Confidence 489998877655544443333222 11110 00 0 0 00011233
Q ss_pred hccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhh
Q psy12242 287 FTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIG 366 (498)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~ 366 (498)
++++..+. ......... ..+.....+.|.+.++.|.+..+++.......++.++++++.+++.||++||+....+
T Consensus 202 l~~~~~~~----l~~~~~~~~-~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~ 276 (393)
T PRK09705 202 VFTPRAWT----LGVYFGLIN-GGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLA 276 (393)
T ss_pred ccCHhHHH----HHHHHHHHH-HHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHH
Confidence 34443321 112222222 2334455556666666899999999999999999999999999999999999888877
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCC-CChhhHHHHHHHHHHHHHHHHHHH
Q psy12242 367 FMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFS-QSARPLATSLAVSINWTANFIVGL 445 (498)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~g~~~~~~~~~~~~~~~ 445 (498)
..+..++...+..... .... ... .+ .+.......+.......+..+ ++.+++..|+.+...+++..++|.
T Consensus 277 ~~l~~~~~~~~~~~~~-----~~~~-~~~--~l-~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~ 347 (393)
T PRK09705 277 LVLQLVGFCGFIWLPL-----QLPV-LWA--MV-CGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPW 347 (393)
T ss_pred HHHHHHHHHHHHHccc-----hHHH-HHH--HH-HHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666665544332211 1111 111 11 122222333444445556664 678899999999999999999999
Q ss_pred hHHHHHHhhhh--HHHHHHHHHHHHHHHHHHHhccCCCCCC
Q psy12242 446 GFLPIESIIHG--YVFTIFAVLQAMFVLFIYKKVPETKNKT 484 (498)
Q Consensus 446 ~~~~l~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (498)
+.|++.|..|. ..+.+.+.++++..++.+.+.+|+++|.
T Consensus 348 ~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (393)
T PRK09705 348 FSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQL 388 (393)
T ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccccch
Confidence 99999999874 3455555566666666667777776653
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-34 Score=267.32 Aligned_cols=347 Identities=13% Similarity=0.053 Sum_probs=234.3
Q ss_pred cCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhhHHHHHHHHHH
Q psy12242 51 FNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLA 130 (498)
Q Consensus 51 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~ 130 (498)
+++.+|.++++++ +++.+. |++.+.+.+++.+++++.|+++||+|||+++..+......+
T Consensus 10 ~~~~lp~i~~~~~----------------~s~~~~----g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~ 69 (368)
T TIGR00903 10 FSPVLSLVAEDID----------------VSKEEL----GLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAA 69 (368)
T ss_pred HHhhHHHHHHHhC----------------cCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHH
Confidence 5678899999998 888888 99999999999999999999999999998876655555444
Q ss_pred HHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHHHHHHHHHHHHHHHhcCcccCCCCch
Q psy12242 131 ALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLLGTADGW 210 (498)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~w 210 (498)
.+..... ++++.++++|+++|++.+. .+.....++|++|+++|++++++...+..+|.+++++++ ..+.++.+|
T Consensus 70 ~~~~~~~---~~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~--~~l~~~~gW 143 (368)
T TIGR00903 70 AGRLLDP---FNYEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAG--LKIYTAGGL 143 (368)
T ss_pred HHHHHHh---ccHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHccch
Confidence 3333333 6899999999999999986 556666779999999999999999999999999999854 467778899
Q ss_pred hHHHHhhhHHHHHHH-hhcccccCChhhHHHhcCCHHHHHHHHHhhcCCchhHHHHHHHHHhHHhhhcCCCchhhhHhcc
Q psy12242 211 PLLLAFTLVPGIYQM-ITLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIPKVSLREMFTN 289 (498)
Q Consensus 211 r~~f~~~~~~~~~~~-~~~~~~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (498)
|+.|++.+++.++.. +.++++||+|++. ++..+ . + + . .+++++++++
T Consensus 144 r~~f~~~~~l~~~~~~~~~~~lp~~p~~~----~~~~~---------------~--~---~---~-----~~~~~~ll~~ 191 (368)
T TIGR00903 144 QLLIIPIAAVAAAGIILVLAALPALPFQA----AEGFG---------------F--K---D---A-----VKEFGALAGR 191 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCC----CCCcc---------------h--H---H---H-----HHHHHHHHcC
Confidence 999999766655544 4456689987541 10000 0 0 0 0 0135677887
Q ss_pred ccchhhHHHHHHHHHHHHhhchHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCc---eehhh-
Q psy12242 290 AQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRK---TLLLI- 365 (498)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~---~~~~~- 365 (498)
+..|... ...++.. .....+..|.|.++++.|++.. .+.......+.+.++ .++++||..|| +....
T Consensus 192 ~~~~~~~----~~~~~~~-~~~~~~~~wlp~~L~~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~ 262 (368)
T TIGR00903 192 KDLWIIG----AILGFGV-ALFDNLAIWLEAALRPAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRA 262 (368)
T ss_pred hhHHHHH----HHHHHHH-HHHHHHHHHHHHHHHHCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHH
Confidence 7554322 2222222 2234556677777777788754 555555555544444 57788887653 32222
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHH
Q psy12242 366 GFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGL 445 (498)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~ 445 (498)
...+.++....+.. . . ..... +......+++.....+..+++.+|.+|++.|+++.|+.+..+++++.++|.
T Consensus 263 ~~~~~a~~~~~~~~---~-~---~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~ 334 (368)
T TIGR00903 263 AALLIAAFFLALAF---E-L---NRLAL-FAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALAL 334 (368)
T ss_pred HHHHHHHHHHHHHH---c-c---ccHHH-HHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHH
Confidence 22222222222211 1 1 11111 222222333333344567788899999999999999999999999999999
Q ss_pred hHHHHHHhhh-hHHHHHHHHHHHHHHHHHH
Q psy12242 446 GFLPIESIIH-GYVFTIFAVLQAMFVLFIY 474 (498)
Q Consensus 446 ~~~~l~~~~g-~~~~~~~~~~~~~~~~~~~ 474 (498)
+.+.+.. + ...+.++++..+++.+...
T Consensus 335 ~~~~~~~--~~~~~f~~~~~~~~i~~~~~~ 362 (368)
T TIGR00903 335 AAMLFIS--SAEAYFTFLAILITIAFAIAL 362 (368)
T ss_pred HHHHHhc--CHHHHHHHHHHHHHHHHHHHH
Confidence 9988874 3 3456666666666665543
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=280.31 Aligned_cols=399 Identities=16% Similarity=0.160 Sum_probs=269.3
Q ss_pred chHHHHHHHHHhhhhhccccccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHH
Q psy12242 26 NGKLAFAISASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGA 105 (498)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~ 105 (498)
+++++.....+.++ .+.++++....+...|.+.++++ .++.+. +++.+.+.+++.++++
T Consensus 15 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~----------------~s~~~~----~~~~~~~~~~~~~~~~ 73 (496)
T PRK03893 15 NRAQWKAFSAAWLG-YLLDGFDFVLITLVLTEVQGEFG----------------LTTVQA----ASLISAAFISRWFGGL 73 (496)
T ss_pred CHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhC----------------CCHHHH----HHHHHHHHHHHHHHHH
Confidence 34555566677777 78888999888888899999988 888888 9999999999999999
Q ss_pred hHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHH
Q psy12242 106 ATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQ 185 (498)
Q Consensus 106 ~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~ 185 (498)
+.|+++||+|||+.++.+.++.+++.++.+++ ++++.+++.|++.|++.+...+....++.|++|+++|++++++..
T Consensus 74 ~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 150 (496)
T PRK03893 74 LLGAMGDRYGRRLAMVISIVLFSVGTLACGFA---PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLI 150 (496)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 99999999999999999999999999999998 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCcccCCCCchhHHHHhhhHHHHHHHhhcccccCChhhHHHhcCCHHHHHHHHHhhcCCchhHHHH
Q psy12242 186 LVITISIVISQILGLGGLLGTADGWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDEM 265 (498)
Q Consensus 186 ~~~~~g~~~~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~ 265 (498)
.+..+|..+++.+. +.+.+..+||+.|++.++..++.++....+||++++. .++++.++.++..+.....+......
T Consensus 151 ~~~~~g~~~~~~~~--~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (496)
T PRK03893 151 SGFSIGAVVAAQVY--SLVVPVWGWRALFFIGILPIIFALWLRKNLPEAEDWK-EKHAGKAPVRTMVDILYRGEHRIINI 227 (496)
T ss_pred HHHHHHHHHHHHHH--HHHhccCCHHHHHHHHHHHHHHHHHHHHhCCCchhhh-hhccccccchhHHHHHhcchhHHHHH
Confidence 99999999999853 4666788999999886665555544555678776542 11111111111111110000000000
Q ss_pred H-HHHH--h-HHhhhcCCCchhh-------------h-HhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHH-hhcC
Q psy12242 266 D-EMRA--E-YESIKLIPKVSLR-------------E-MFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIF-TMAQ 326 (498)
Q Consensus 266 ~-~~~~--~-~~~~~~~~~~~~~-------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g 326 (498)
. .... . ...........+. . ..+.+..+.+.........+..+........+.|.+. ++.|
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g 307 (496)
T PRK03893 228 LLTLAAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLG 307 (496)
T ss_pred HHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcC
Confidence 0 0000 0 0000000000000 0 0000000111111111111111111122344556665 5889
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhc
Q psy12242 327 LSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAV 406 (498)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (498)
++..+++.+.....++.+++.++.+++.||++||+.+..+..+..+..+.+.... . ..................
T Consensus 308 ~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~ 381 (496)
T PRK03893 308 YDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIG---G---ANVWVLGLLLFFQQMLGQ 381 (496)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc---c---cHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999987776555444433322211 0 111111122222222333
Q ss_pred CccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhH
Q psy12242 407 GPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIHGY 457 (498)
Q Consensus 407 ~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~~ 457 (498)
+..+....++.|.+|++.|++++|+.+....+++.++|.+.|.+.+..++.
T Consensus 382 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~ 432 (496)
T PRK03893 382 GISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLG 432 (496)
T ss_pred ccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChH
Confidence 344556667889999999999999999999999999999999999988863
|
|
| >KOG0252|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=271.36 Aligned_cols=448 Identities=19% Similarity=0.243 Sum_probs=315.2
Q ss_pred CcchHHHHHHHHHhhhhhccccccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHH
Q psy12242 24 GLNGKLAFAISASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIG 103 (498)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~ 103 (498)
...|+....+.++..+ .+.++||...++.+.+.+...|.... ++. .+ .+..-. +.+..+..+|.++|
T Consensus 34 g~qw~~fk~i~iAG~G-fftDsYDlF~I~lVt~il~~lY~~~~------~~~-g~-~ps~i~----~~Vn~~A~vGti~G 100 (538)
T KOG0252|consen 34 GLQWKHFKAIIIAGMG-FFTDSYDLFSISLVTKILGYLYYHGD------ESG-GH-YPSGVL----ALVNAAALVGTIFG 100 (538)
T ss_pred chhHHHHHHHHHhhhh-hcccchhhhhHHHHHHHHHHHhcCCC------CCC-Cc-CCchHH----HHHHHHHHHHHHHH
Confidence 3478888899999999 89999999999998887776654211 011 11 333333 88889999999999
Q ss_pred HHhHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhccch----hHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhh
Q psy12242 104 GAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSS----YEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGA 179 (498)
Q Consensus 104 ~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~ 179 (498)
|++.|+++||+|||+++...+++.++++++++++...++ .+++...|++.|+|.|+-+|...+..+|...+++||.
T Consensus 101 Ql~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa 180 (538)
T KOG0252|consen 101 QLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGA 180 (538)
T ss_pred HHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccc
Confidence 999999999999999999999999999998887643222 4678889999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHHHHHHHHhcCc------ccCC-------CCchhHHHHhhhHHHHHHHhhcccccCChhhHHHhcCCHH
Q psy12242 180 VGTVYQLVITISIVISQILGLGG------LLGT-------ADGWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQEL 246 (498)
Q Consensus 180 ~~~~~~~~~~~g~~~~~~i~~~~------~~~~-------~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~l~~~~~~~~ 246 (498)
..+.+.+..+.|.+.|.++++.. .+.. ..-||..+.+++++.+..+...+.+|||++|-....++.+
T Consensus 181 ~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~ 260 (538)
T KOG0252|consen 181 FIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLK 260 (538)
T ss_pred eeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHh
Confidence 99998888888888887754310 0111 1249999999999999999888999999988522333333
Q ss_pred HHHHHHHhhcCCchhHHHHHHHHHhHHhhhcCCCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHHhhcC
Q psy12242 247 EAQRALSWLRGTIEVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTMAQ 326 (498)
Q Consensus 247 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 326 (498)
++.+..++.... +-+.++..+.....+++....+...+..+ .-+.++..+..++...... +....+...+++..|
T Consensus 261 ~a~~d~~k~~~~---~~~~~~~~~~~~~~~~~~~~~F~~~f~~~-hg~~Llgt~~~WFllDiaf-y~~nL~~s~I~~~ig 335 (538)
T KOG0252|consen 261 QAAGDMKKVLSV---DIEAESTAESDVPPPSNSFGLFSRLFLRW-HGKHLLGTAGTWFLLDIAF-YGQNLFQSVIFSAIG 335 (538)
T ss_pred hhhhcccccccc---ccchhhccccCCCCcccccchHHHHHHHH-HHHHHHHHHHHHHhhhhhh-hccccHHHHHHHhhc
Confidence 333211111111 00000000000000111111133333333 3345666666666655443 345555666777777
Q ss_pred CCchhHHH--------HHH-HHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy12242 327 LSDTAAQW--------ATL-GMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILV 397 (498)
Q Consensus 327 ~~~~~~~~--------~~~-~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (498)
+.+..... ... +.....++|..+..+++|++||+++.+.+++++.+..+.+........ ......++.
T Consensus 336 ~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~---~~~Gf~v~y 412 (538)
T KOG0252|consen 336 VIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLE---NTIGFVVLY 412 (538)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCccccc---ccCceeehH
Confidence 76554333 222 223334456777788999999999999999999988888776433211 222233344
Q ss_pred HHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHH-----hhhh-HHHHHHHHHHHHHHH
Q psy12242 398 IMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIES-----IIHG-YVFTIFAVLQAMFVL 471 (498)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~-----~~g~-~~~~~~~~~~~~~~~ 471 (498)
.+...+...+.+.....+.+|.+|.+.|++..|+....+..|++++...+.++.+ ..+. .+++++++++.++.+
T Consensus 413 ~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~ 492 (538)
T KOG0252|consen 413 SLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGIL 492 (538)
T ss_pred HHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHh
Confidence 5556667778888888999999999999999999999999999999999999988 4453 678888888877776
Q ss_pred HHHHhccCCCCCCHHHHHHHHH
Q psy12242 472 FIYKKVPETKNKTQEEIAAMFR 493 (498)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~ 493 (498)
+.++ .||+++++++|++.+.+
T Consensus 493 ~T~l-~pEtk~~~leei~~e~~ 513 (538)
T KOG0252|consen 493 FTLL-IPETKGKSLEEISNEEE 513 (538)
T ss_pred eeEE-eecccccCHHHhcChhh
Confidence 6554 67999999998866544
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=276.32 Aligned_cols=395 Identities=13% Similarity=0.076 Sum_probs=250.1
Q ss_pred HHHHHHHHhhhhhccccccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhHH
Q psy12242 29 LAFAISASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATG 108 (498)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g 108 (498)
.|.......+. ......+...++...|.+.++ + .++.+. |++.+.+.+++.+++++.|
T Consensus 27 ~~~~~~~~~~~-~~~~~~~~~~~~~~~p~l~~~-g----------------~s~~~~----g~~~~~~~i~~~~~~~~~G 84 (452)
T PRK11273 27 RWQIFLGIFFG-YAAYYLVRKNFALAMPYLVEQ-G----------------FSRGDL----GFALSGISIAYGFSKFIMG 84 (452)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHhhHHHHHc-C----------------CCHHHH----HHHHHHHHHHHHHHHhhhh
Confidence 34433434444 444555554455667777766 6 788888 9999999999999999999
Q ss_pred HHHHhhccchhhHHHHHHHHHHHHHHhhhhc-cchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHHHH
Q psy12242 109 YVAERFGRKGGLLINNVFVVLAALLQGFSKA-FSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLV 187 (498)
Q Consensus 109 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~ 187 (498)
+++||+|||++++.+.++.+++.+++++++. ..+++.+++.|++.|++.+...+.....+.|++|+++|++++++++.+
T Consensus 85 ~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 164 (452)
T PRK11273 85 SVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCA 164 (452)
T ss_pred hhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 9999999999999999999999998887621 136888899999999999988888888999999999999999999999
Q ss_pred HHHHHH-HHHHHhcCcccCCCCchhHHHHhhhHHHHHH-HhhcccccCChhhHHHhcCCHHHHHHHHHhhcCCchhHHHH
Q psy12242 188 ITISIV-ISQILGLGGLLGTADGWPLLLAFTLVPGIYQ-MITLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDEM 265 (498)
Q Consensus 188 ~~~g~~-~~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~-~~~~~~~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~ 265 (498)
.++|.. .++++.. ......+||+.|++.+++.++. ++..+++||+|+.. ...++++.++ +.+
T Consensus 165 ~~~g~~~~~~l~~~--~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~-------~~~----- 228 (452)
T PRK11273 165 HNVGGGLPPLLFLL--GMAWFNDWHAALYMPAFAAILVALFAFAMMRDTPQSC--GLPPIEEYKN-------DYP----- 228 (452)
T ss_pred HHhhhhHHHHHHHH--HHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCHhhc--CCCChhhhhh-------ccc-----
Confidence 998864 4554321 1112349999999987665554 44556678887431 1111111000 000
Q ss_pred HHHHHhHHhhhcCCCchhh-----hHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHH-hhcCCCchhHHHHHHHH
Q psy12242 266 DEMRAEYESIKLIPKVSLR-----EMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIF-TMAQLSDTAAQWATLGM 339 (498)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~ 339 (498)
++.++ ++.++.+.+ .+++++.+|. .....++.... ......+.|.++ ++.|++..+++......
T Consensus 229 ----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~-~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~ 298 (452)
T PRK11273 229 ----DDYNE-KHEQELTAKQIFMQYVLPNKLLWY----IAIANVFVYLL-RYGILDWSPTYLKEVKHFALDKSSWAYFLY 298 (452)
T ss_pred ----ccccc-ccCCCccHHHHHHHHHHcChHHHH----HHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 00000 000111112 2445553332 22222222222 233444555555 45789988988888888
Q ss_pred HHHHHHHHHhhhhhhhcc--CCceehhh-hhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhh
Q psy12242 340 GTMNVVMTLVSLVLVEIS--GRKTLLLI-GFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLV 416 (498)
Q Consensus 340 ~~~~~~~~~~~g~l~dr~--g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (498)
.++.+++.++.|+++||+ +||..... ...+..++.+.+.. ... .......+..... +....+.......+.
T Consensus 299 ~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~--~~~---~~~~~~~~~~~~~-g~~~~~~~~~~~~~~ 372 (452)
T PRK11273 299 EYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWL--NPA---GNPTVDMACMIVI-GFLIYGPVMLIGLHA 372 (452)
T ss_pred HHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHH--hcc---cChHHHHHHHHHH-HHHHHhHHHHHHHHH
Confidence 899999999999999999 44443222 11222222221111 111 1111111111111 111112222233456
Q ss_pred cccCCCChhhHHHHHHHHHHHHHHHH-HHHhHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHhc
Q psy12242 417 SELFSQSARPLATSLAVSINWTANFI-VGLGFLPIESIIHG-YVFTIFAVLQAMFVLFIYKKV 477 (498)
Q Consensus 417 ~~~~p~~~~~~~~g~~~~~~~~~~~~-~~~~~~~l~~~~g~-~~~~~~~~~~~~~~~~~~~~~ 477 (498)
.|.+|++.||++.|+.+...++++.+ +|.+.|.+.|..|+ ..+.+.+++++++.++...+.
T Consensus 373 ~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~ 435 (452)
T PRK11273 373 LELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 435 (452)
T ss_pred HHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHh
Confidence 79999999999999999998888765 79999999999886 455566666666655555433
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=272.16 Aligned_cols=387 Identities=16% Similarity=0.175 Sum_probs=266.2
Q ss_pred ccccccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhhH
Q psy12242 42 FQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLL 121 (498)
Q Consensus 42 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~ 121 (498)
+...+|...++...|.+.++++ .++.+. |++.+++.++..+++++.|+++||+|||+++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~g----------------~s~~~~----~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~ 63 (399)
T TIGR00893 4 VINYLDRANLSFAAPMLQEDLG----------------LSAAQY----GYVFSAFSWGYVVGQFPGGWLLDRFGARKTLA 63 (399)
T ss_pred hHHHHHHHhhhHhHHHHHHhhC----------------CChhhH----HHHHHHHHHHHHHHHHhHHHHHHhcCcceeeH
Confidence 3445666777788898999888 788888 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHHHHHHHHHHHHHHHhcC
Q psy12242 122 INNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLG 201 (498)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~ 201 (498)
.+.++.+++.++++++ ++++.++++|++.|++.+...+...+++.|++|+++|++++++.....++|.++++.++
T Consensus 64 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~-- 138 (399)
T TIGR00893 64 VFIVIWGVFTGLQAFA---GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLV-- 138 (399)
T ss_pred HHHHHHHHHHHHHHHH---cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHH--
Confidence 9999999999999999 89999999999999999999999999999999999999999999999999999999853
Q ss_pred cccCCCCchhHHHHhhhHHHHHHHhh-cccccCChhhHHHhcCCHHHHHHHHHhhcCCchhHHHHHHHHHhHHhhhcCCC
Q psy12242 202 GLLGTADGWPLLLAFTLVPGIYQMIT-LPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIPK 280 (498)
Q Consensus 202 ~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (498)
+.+.+..+||+.|++.++..++..+. .++.||+|+.. +..++++..+..++... +.+.+++++.++
T Consensus 139 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~ 205 (399)
T TIGR00893 139 GWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKA--KWLTEEEKYIVVGGLLA-----------EQQGKGPSTPKK 205 (399)
T ss_pred HHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCCcc--ccCCHHHHhhcchhhcc-----------ccccccccCCCc
Confidence 46666789999999887776665544 44566665320 11111111000000000 000011112233
Q ss_pred chhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHH-HHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCC
Q psy12242 281 VSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTK-IFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGR 359 (498)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~ 359 (498)
...++.+++++.+. .....+..... ......+.|. +.+..|.++.+.+.......++.+++.++.+++.||++|
T Consensus 206 ~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 280 (399)
T TIGR00893 206 YQIKELLKDRRVWG----LALGQFLVNIG-LGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLR 280 (399)
T ss_pred cchHHHhcCHHHHH----HHHHHHHHHhH-HHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566777664332 22222222222 2334444444 446679999999999999999999999999999999999
Q ss_pred ceehhh-hhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHH
Q psy12242 360 KTLLLI-GFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWT 438 (498)
Q Consensus 360 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~ 438 (498)
|+.... ......+..+...............+. ... ......+..+..+....+..|..|++.|+++.|+.+...++
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 358 (399)
T TIGR00893 281 RGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYA-ALA-LVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNL 358 (399)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHhccchhHHH-HHH-HHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHH
Confidence 862221 111111111111111111100011111 111 22222333335678888999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHhhh-h-HHHHHHHHHHHHHHHHH
Q psy12242 439 ANFIVGLGFLPIESIIH-G-YVFTIFAVLQAMFVLFI 473 (498)
Q Consensus 439 ~~~~~~~~~~~l~~~~g-~-~~~~~~~~~~~~~~~~~ 473 (498)
+..++|.+.|.+.+..+ + ..+.+.+++.+++.+..
T Consensus 359 g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 395 (399)
T TIGR00893 359 GGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSY 395 (399)
T ss_pred hhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHH
Confidence 99999999999999887 4 34445555555444433
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=263.54 Aligned_cols=359 Identities=14% Similarity=0.080 Sum_probs=249.1
Q ss_pred hHHHHHHHHHhhhhhccccccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHh
Q psy12242 27 GKLAFAISASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAA 106 (498)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~ 106 (498)
++.|...+.+.+. .+............+|.+.++++ .++.+. |+..+.+.++..+++++
T Consensus 16 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g----------------~s~~~~----g~~~~~~~~~~~~~~~~ 74 (394)
T PRK10213 16 RPNWSAVFSVAFC-VACLIIVEFLPVSLLTPMAQDLG----------------ISEGVA----GQSVTVTAFVAMFASLF 74 (394)
T ss_pred hhHHHHHHHHHHH-HHHHHHHHHHHHhhHHHHHHHcC----------------CCHHHH----HHHHHHHHHHHHHHHHH
Confidence 3344444444444 23333333333445678888887 888888 99999999999999999
Q ss_pred HHHHHHhhccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHHH
Q psy12242 107 TGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQL 186 (498)
Q Consensus 107 ~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~ 186 (498)
.|+++||+|||+++..+.++.+++.++++++ ++++.+++.|+++|++.+...+...+++.|++|+++|++++++...
T Consensus 75 ~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~ 151 (394)
T PRK10213 75 ITQTIQATDRRYVVILFAVLLTLSCLLVSFA---NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFG 151 (394)
T ss_pred HHHHhcccCcHHHHHHHHHHHHHHHHHHHHH---ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHH
Confidence 9999999999999999999999999999998 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcccCCCCchhHHHHhhhHHHHHHHhhc-ccccCChhhHHHhcCCHHHHHHHHHhhcCCchhHHHH
Q psy12242 187 VITISIVISQILGLGGLLGTADGWPLLLAFTLVPGIYQMITL-PFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDEM 265 (498)
Q Consensus 187 ~~~~g~~~~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~ 265 (498)
+.++|.+++|+++ +.+.+..+||+.|++.+++.++..+.. ...||+|+. ++
T Consensus 152 ~~~~g~~ig~~l~--~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~~----~~---------------------- 203 (394)
T PRK10213 152 AVSIALVIAAPLG--SFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLPGE----PS---------------------- 203 (394)
T ss_pred HHHHHHHHHHHHH--HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCCcc----cc----------------------
Confidence 9999999999954 477778899999999876665544333 335665311 00
Q ss_pred HHHHHhHHhhhcCCCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHH
Q psy12242 266 DEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVV 345 (498)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 345 (498)
+...+.++.+++|..+...+..+ ... ........+..|.+.++.|+++.+.+......+++.++
T Consensus 204 ------------~~~~~~~~~l~~~~~~~~~~~~~-~~~---~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~ii 267 (394)
T PRK10213 204 ------------HQKQNTFRLLQRPGVMAGMIAIF-MSF---AGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFV 267 (394)
T ss_pred ------------cchhHHHHHhcCHHHHHHHHHHH-HHH---HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHH
Confidence 00112345566664443222111 111 11122334445777788899999999999999999999
Q ss_pred HHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChh
Q psy12242 346 MTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSAR 425 (498)
Q Consensus 346 ~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 425 (498)
+.++.+++.||.+ |+.+..+..+.......+.... ...+.......+. +.......+...+.+.+..| +.+
T Consensus 268 g~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~------~~~~~~~~~~~l~-G~~~~~~~~~~~~~~~~~~~-~~~ 338 (394)
T PRK10213 268 GTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLWG------SDKIVATGVAIIW-GLTFALVPVGWSTWITRSLA-DQA 338 (394)
T ss_pred HHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHh------hhHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHCc-ccH
Confidence 9999999999954 4433333333233222222211 1112222222222 22222333555556667777 446
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhHHHHHH
Q psy12242 426 PLATSLAVSINWTANFIVGLGFLPIESIIHGYVFTIF 462 (498)
Q Consensus 426 ~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~ 462 (498)
++..+......+++..+++.+.|.+.|..|....+..
T Consensus 339 ~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~ 375 (394)
T PRK10213 339 EKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLML 375 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHH
Confidence 6777888888889999999999999998876443333
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=277.21 Aligned_cols=386 Identities=12% Similarity=-0.013 Sum_probs=271.3
Q ss_pred HHHHHHHHhhhhhccccccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhHH
Q psy12242 29 LAFAISASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATG 108 (498)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g 108 (498)
+|..+..++++ .++...|.++++..+|.+.++++ .+.++. +|+.+.+.+++.++++++|
T Consensus 4 ~~~~~~~~~~~-~~~~~ld~tiv~~a~p~i~~~l~----------------~s~~~~----~~~~~~~~l~~~~~~~~~G 62 (495)
T PRK14995 4 QWLTLVIIVLV-YIPVAIDATVLHVAAPTLSMTLG----------------ASGNEL----LWIIDIYSLVMAGMVLPMG 62 (495)
T ss_pred hHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhC----------------CCHhHH----HHHHHHHHHHHHHHHHHHH
Confidence 45677788888 89999999999999999999998 778888 9999999999999999999
Q ss_pred HHHHhhccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhhccC-cccchhhhHhHHHHH
Q psy12242 109 YVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEIS-PVHLRGAVGTVYQLV 187 (498)
Q Consensus 109 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~ 187 (498)
+++||+|||++++.+.+++.+++++++++ +|++.++++|+++|++.+...+.....+.+++ |+++|++++++....
T Consensus 63 ~l~D~~Grk~~l~~~~~~~~~~~~~~~~a---~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~ 139 (495)
T PRK14995 63 ALGDRIGFKRLLMLGGTLFGLASLAAAFS---PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAV 139 (495)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 99999999999999999999888888887776 679999999999999
Q ss_pred HHHHHHHHHHHhcCcccCCCCchhHHHHhhhHHHHHHHh-hcccccCChhhHHHhcCCHHHHHHH------------HHh
Q psy12242 188 ITISIVISQILGLGGLLGTADGWPLLLAFTLVPGIYQMI-TLPFCPESPKYILLSKGQELEAQRA------------LSW 254 (498)
Q Consensus 188 ~~~g~~~~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~e~p~~l~~~~~~~~~a~~~------------~~~ 254 (498)
..+|..+||. +++.+.++.+||+.|++...++++.++ ..+++||+|+. ++++.+..... ++.
T Consensus 140 ~~~g~~~gp~--lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~---~~~~~d~~g~~~~~~~~~~l~~~~~~ 214 (495)
T PRK14995 140 GSGGAAFGPL--VGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGR---RDQPLNLGHALMLIVAILLLVYSAKT 214 (495)
T ss_pred HHHHHHHHHH--HHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCC---CCCCCChHhHHHHHHHHHHHHHHHHh
Confidence 9999999999 556888889999999998766655543 44557776521 11111110000 000
Q ss_pred hcCCchhHHH-HH--------HHHHhHHhhhcCCCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHH-hh
Q psy12242 255 LRGTIEVHDE-MD--------EMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIF-TM 324 (498)
Q Consensus 255 ~~~~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 324 (498)
.......... .. -......+.+..++.-..+++|++.++...+..+.. .. ......++.|.++ +.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~~~lf~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~lq~v 289 (495)
T PRK14995 215 ALKGFLSLWVTSLTLLTGALLLGLFIRTQLAASRPMIDMRLFTHRIILSGVVMAMTA----MI-TLVGFELLMAQELQFV 289 (495)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHhCCcccHHHHHHHHHH----HH-HHHHHHHHHHHHHHHH
Confidence 0000000000 00 000000011111111224677776544322222211 11 1223344555554 45
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q psy12242 325 AQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFF 404 (498)
Q Consensus 325 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (498)
.|+++.+++....+..++..++.++.|++.||+|+|+.+..+..+.+++...+..... .. ..+.......+.+.+.
T Consensus 290 ~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~-~~---~~~~~~~~~~l~G~g~ 365 (495)
T PRK14995 290 HGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDF-ST---QQWQAWGLMALLGFSA 365 (495)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcC-CC---chHHHHHHHHHHHHhH
Confidence 7999999999999999999999999999999999998887777766666555443211 11 1111112222222222
Q ss_pred hcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q psy12242 405 AVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESI 453 (498)
Q Consensus 405 ~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~ 453 (498)
+ ...+.......+..|+++++.+.++.+....+|+.+|+.+.|.+.+.
T Consensus 366 g-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 366 A-SALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred H-HHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 22344455666788999999999999999999999999999988764
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=269.50 Aligned_cols=351 Identities=15% Similarity=0.109 Sum_probs=252.6
Q ss_pred ccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhhHHHHHHHHH
Q psy12242 50 VFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVL 129 (498)
Q Consensus 50 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~ 129 (498)
..+...|.+.++++ .++.+. |++.+++.+++.++++++|+++||+|||+++..+.++.++
T Consensus 21 ~~~~~~~~~~~~~~----------------~s~~~~----g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~ 80 (377)
T TIGR00890 21 TWTLLAPPLGRYFG----------------VGVTAV----AIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGL 80 (377)
T ss_pred hhhhHHHHHHHHhC----------------CCHHHH----HHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHH
Confidence 35667899999998 888888 9999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHHHHHHHHHHHHHHHhcCcccCCCCc
Q psy12242 130 AALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLLGTADG 209 (498)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~ 209 (498)
+.++++++ ++++.++++|++.|++.+...+.....+.|++| ++|+++.++...+.++|..+++++. ....+..+
T Consensus 81 ~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~ 154 (377)
T TIGR00890 81 GFTFYAIA---DSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLI--TSVINLEG 154 (377)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHH--HHHHhccc
Confidence 99999999 999999999999999999888888888999997 6799999999999999988766532 24445679
Q ss_pred hhHHHHhhhHHHHHHHhhc-ccccCChhhHHHhcCCHHHHHHHHHhhcCCchhHHHHHHHHHhHHhhhcCCCchhhhHhc
Q psy12242 210 WPLLLAFTLVPGIYQMITL-PFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIPKVSLREMFT 288 (498)
Q Consensus 210 wr~~f~~~~~~~~~~~~~~-~~~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (498)
||+.|++.++..++..+.. ++++|+|+. +++++++ .+.++.+.++.++
T Consensus 155 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~----------------------------~~~~~~~~~~~~~ 203 (377)
T TIGR00890 155 VPAAFIYMGIIFLLVIVLGAFLIGYPPGQ---LIKTNIE----------------------------VSVKDYTVWEMLR 203 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheecCchh---ccccCcc----------------------------cchhhhhHHHHHc
Confidence 9999999887766655443 445554321 0000000 0000113345666
Q ss_pred cccchhhHHHHHHHHHHHHhhchHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhH
Q psy12242 289 NAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFM 368 (498)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~ 368 (498)
++..+..... .+....... ....+.+.+.++.|.+..+.+.......+..++++++.+++.||++||+.+..+..
T Consensus 204 ~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~ 278 (377)
T TIGR00890 204 TPQFWVLYLS----FFLNAVSGL-LLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFG 278 (377)
T ss_pred CccHHHHHHH----HHHHhHHHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 6644422111 111111112 22233344557788888888888899999999999999999999999999888777
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHH
Q psy12242 369 GVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFL 448 (498)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~ 448 (498)
+..++.+.+..... ......... ....+.......+....+..|.+|+++|+++.|+.+....++..++|.+.|
T Consensus 279 ~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g 352 (377)
T TIGR00890 279 ISAVGMAAMLFIPM-----LNDVLFLAT-VALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIAS 352 (377)
T ss_pred HHHHHHHHHHHccc-----chhHHHHHH-HHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHH
Confidence 77776655443211 011111111 122222222333455567889999999999999999999999999999999
Q ss_pred HHHHhhhhH-HHHHHHHHHHH
Q psy12242 449 PIESIIHGY-VFTIFAVLQAM 468 (498)
Q Consensus 449 ~l~~~~g~~-~~~~~~~~~~~ 468 (498)
.+.+..|+. .+.+.+++.++
T Consensus 353 ~l~~~~g~~~~f~~~~~~~~~ 373 (377)
T TIGR00890 353 HALTEIGFEYTFIVTGAFALT 373 (377)
T ss_pred HHHhhhchhhHHHHHHHHHHH
Confidence 999988864 44444444333
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=262.89 Aligned_cols=366 Identities=16% Similarity=0.089 Sum_probs=255.0
Q ss_pred HHHHHHhhhhhccccccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy12242 31 FAISASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATGYV 110 (498)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l 110 (498)
.......+. .+..+.+....+...|.+.++++ +++.+. +++.+.+.+++.+++++.|++
T Consensus 7 ~~~~~~~~~-~~~~~~~~~~~g~~~~~i~~~~~----------------~s~~~~----g~~~s~~~~~~~i~~~~~g~l 65 (394)
T PRK03699 7 KLTWISFLS-YALTGALVIVTGMVMGPIAEYFN----------------LPVSSM----SNTFTFLNAGILISIFLNAWL 65 (394)
T ss_pred HHHHHHHHH-HHHHHHHHHHHhhhhHHHHHHhC----------------CCHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 344455556 67777888888888999999998 888888 999999999999999999999
Q ss_pred HHhhccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHHHHHHH
Q psy12242 111 AERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITI 190 (498)
Q Consensus 111 ~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 190 (498)
.||+|||+++..+.++.+++.++++++ ++++.+++.|+++|++.+...+...+++.|++|+++|+++++..+....+
T Consensus 66 ~dr~g~r~~~~~~~~~~~i~~~l~~~~---~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 142 (394)
T PRK03699 66 MEIIPLKRQLIFGFALMILAVAGLMFS---HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSM 142 (394)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHc---chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHH
Confidence 999999999999999999999999998 89999999999999999999999999999999999999999999888899
Q ss_pred HHHHHHHHhcCcccCCCCchhHHHHhhhHHHHHHHhhcccccCChhhHHHhcCCHHHHHHHHHhhcCCchhHHHHHHHHH
Q psy12242 191 SIVISQILGLGGLLGTADGWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDEMDEMRA 270 (498)
Q Consensus 191 g~~~~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 270 (498)
|..++|.+. +....+..+||+.|.+.+++.++..+..++ ++.|+. ++++++
T Consensus 143 g~~~~~~~~-~~l~~~~~gw~~~f~~~~~~~~~~~~~~~~-~~~p~~---~~~~~~------------------------ 193 (394)
T PRK03699 143 AGMIFPIIA-AYLLARSIEWYWVYACIGLVYVAIFILTLF-SEFPAL---GKHAPK------------------------ 193 (394)
T ss_pred HHHHHHHHH-HHHHhccccHHHHHHHHHHHHHHHHHHHHh-cCCccc---cccCcc------------------------
Confidence 988888753 123345579999999877766555443332 222210 000000
Q ss_pred hHHhhhcCCCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHH-hhcCCCchhHHHHHHHHHHHHHHHHHh
Q psy12242 271 EYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIF-TMAQLSDTAAQWATLGMGTMNVVMTLV 349 (498)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~ 349 (498)
+.++ . .+.+ ..+.++......+.... .......+.|.+. +++|+++.+++.......++..+++++
T Consensus 194 ---~~~~----~----~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~ 260 (394)
T PRK03699 194 ---ADKP----V----AKEK-WGIGVLFLAIAALLYIL-AQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWI 260 (394)
T ss_pred ---ccCc----c----cccc-CChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHH
Confidence 0000 0 0000 11122222222222222 2234445555555 667999999999999999999999999
Q ss_pred hhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHH
Q psy12242 350 SLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLAT 429 (498)
Q Consensus 350 ~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 429 (498)
.+++.||+++|+.+.....+..+....+... + ........ .+..++...+..+...++..|..|. .+++..
T Consensus 261 ~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~----~---~~~~~~~~-~~~~G~~~~~~~~~~~~~~~~~~~~-~~~~~~ 331 (394)
T PRK03699 261 FSFIVRFFDLQRILTVLAGLALVLMYLFVNT----D---DPSHLLYA-ILGLGFFSSAIYTTIITLGSQQTKV-ASPKLV 331 (394)
T ss_pred HHHHHHHhchhhHHHHHHHHHHHHHHHHHHc----C---CchHHHHH-HHHHHHHHHHHHHHHHHHHHHHccC-CCHHHH
Confidence 9999999999988876655544433333211 1 11111111 2222222233345555566676664 457788
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhh-HHHHHHHHHHHHHHH
Q psy12242 430 SLAVSINWTANFIVGLGFLPIESIIHG-YVFTIFAVLQAMFVL 471 (498)
Q Consensus 430 g~~~~~~~~~~~~~~~~~~~l~~~~g~-~~~~~~~~~~~~~~~ 471 (498)
+......++|..++|.+.|.+.+..|+ ..++..+++++++.+
T Consensus 332 g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~ 374 (394)
T PRK03699 332 NFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFV 374 (394)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHH
Confidence 888889999999999999999998885 344444444444433
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-32 Score=259.33 Aligned_cols=360 Identities=14% Similarity=0.102 Sum_probs=250.3
Q ss_pred hccccccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhh
Q psy12242 41 SFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGL 120 (498)
Q Consensus 41 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l 120 (498)
.+..+.......+.+|.+.++++ .++.+. |++.+.+.+++.++++++|+++||+|||+++
T Consensus 12 ~~~~~~~~~~~~~~l~~~~~~~g----------------~s~~~~----g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~ 71 (382)
T PRK10091 12 TFGLGMAEFGIMGVLTELAHDVG----------------ISIPAA----GHMISYYALGVVVGAPIIALFSSRYSLKHIL 71 (382)
T ss_pred HHHHHhhHHHHHhChHHHHHHcC----------------CCHHHH----hHHHHHHHHHHHHHHHHHHHHHccCccHHHH
Confidence 45555666667778899999988 788888 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHHHHHHHHHHHHHHHhc
Q psy12242 121 LINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGL 200 (498)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~ 200 (498)
..+..+.+++.++++++ +|++.+++.|+++|++.+...+....++.|++|+++|++++++...+..+|..+++++
T Consensus 72 ~~~~~~~~~~~~l~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l-- 146 (382)
T PRK10091 72 LFLVALCVIGNAMFTLS---SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPL-- 146 (382)
T ss_pred HHHHHHHHHHHHHHHHh---CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccH--
Confidence 99999999999999999 9999999999999999998888888999999999999999999999999999999884
Q ss_pred CcccCCCCchhHHHHhhhHHHHHHHh-hcccccCChhhHHHhcCCHHHHHHHHHhhcCCchhHHHHHHHHHhHHhhhcCC
Q psy12242 201 GGLLGTADGWPLLLAFTLVPGIYQMI-TLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIP 279 (498)
Q Consensus 201 ~~~~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (498)
++.+.+..+||+.|++.++..++..+ ...++||.++. .+.+ .+
T Consensus 147 ~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~~-----~~~~---------------------~~---------- 190 (382)
T PRK10091 147 GTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIRDE-----AKGG---------------------LR---------- 190 (382)
T ss_pred HHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCCcc-----cccC---------------------HH----------
Confidence 34666778999999998776655543 34456775310 0000 00
Q ss_pred CchhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCC
Q psy12242 280 KVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGR 359 (498)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~ 359 (498)
...+.++++..+. .................+..+++.+..|.++.+.+.......++.+++.++.+++.||+++
T Consensus 191 --~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~ 264 (382)
T PRK10091 191 --EQFHFLRSPAPWL----IFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSP 264 (382)
T ss_pred --HHHHHhcChHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCc
Confidence 0012334442221 1111111111112223444566656689999999999999999999999999999999999
Q ss_pred ceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHH
Q psy12242 360 KTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTA 439 (498)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~ 439 (498)
|+.+..+..+.+++.+.+..... ..+.......+...+......+.......+..|++.++.+ ..+....+|
T Consensus 265 ~~~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g 336 (382)
T PRK10091 265 LRIAAVTDFIIVLALLMLFFFGG------MKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLG 336 (382)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHh------hHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHH
Confidence 99988877776666544433211 1111111111222211111222222344454455555544 346678899
Q ss_pred HHHHHHhHHHHHHhh-hh-HHHHHHHHHHHHHHHHHHH
Q psy12242 440 NFIVGLGFLPIESII-HG-YVFTIFAVLQAMFVLFIYK 475 (498)
Q Consensus 440 ~~~~~~~~~~l~~~~-g~-~~~~~~~~~~~~~~~~~~~ 475 (498)
..++|.+.|.+.|.. ++ ..+...++++.+....+..
T Consensus 337 ~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (382)
T PRK10091 337 SAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLL 374 (382)
T ss_pred HHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHH
Confidence 999999999999964 44 3444444444444443333
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-32 Score=261.30 Aligned_cols=362 Identities=15% Similarity=0.084 Sum_probs=244.0
Q ss_pred ccccccccccCCcHHH-HHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhh
Q psy12242 42 FQHGYNTGVFNAPQKL-ISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGL 120 (498)
Q Consensus 42 ~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l 120 (498)
+....+..+..+.+|. ++++++ .++.+. |++.+++.+++.+++++.|+++||+|||+++
T Consensus 25 ~~~~~~~~~~~~~l~~~i~~~~g----------------~s~~~~----g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l 84 (399)
T PRK05122 25 FISYLTIGLPLAVLPGYVHDQLG----------------FSAFLA----GLVISLQYLATLLSRPHAGRYADTLGPKKAV 84 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC----------------ccHHHH----HHHHHHHHHHHHHhchhhHhHHhccCCcchH
Confidence 4444555655566654 567776 777777 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhccc-----hhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHHHHHHHHHHHH
Q psy12242 121 LINNVFVVLAALLQGFSKAFS-----SYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVIS 195 (498)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~ 195 (498)
+.+.++.+++.+.+.++...+ +++.+++.|+++|++.+...+...+++.|++|+++|++++++...+..+|.+++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g 164 (399)
T PRK05122 85 VFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIG 164 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHH
Confidence 999999988877766542112 567889999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCcccCCCCchhHHHHhhhHHHHHHHhhcccccCChhhHHHhcCCHHHHHHHHHhhcCCchhHHHHHHHHHhHHhh
Q psy12242 196 QILGLGGLLGTADGWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDEMDEMRAEYESI 275 (498)
Q Consensus 196 ~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (498)
+.++ +.+.+..+||+.+++.++..++..+.....|++++ +++
T Consensus 165 ~~l~--~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-------------------------------- 206 (399)
T PRK05122 165 APLG--VLLYHWGGLAGLGLLIMLLALLGLLLARPRPAVPP----VKG-------------------------------- 206 (399)
T ss_pred HHHH--HHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCCCC----CCc--------------------------------
Confidence 9843 46667789999988776665544433332333210 000
Q ss_pred hcCCCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhh
Q psy12242 276 KLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVE 355 (498)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d 355 (498)
++.+.++.+++ .+..........+ .......+.+.+.++.|.+ +.+.......++.+++.++.+++.|
T Consensus 207 ---~~~~~~~~~~~--~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~ 274 (399)
T PRK05122 207 ---ERLPFRRVLGR--VWPYGMGLALASI-----GFGTIATFITLYYAARGWD--GAALALTLFGVAFVGARLLFGNLIN 274 (399)
T ss_pred ---cchhHHHHHHH--HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHcccc--cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 00011122221 1111111111111 1222333444444555653 4456667778888999999999999
Q ss_pred ccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHH
Q psy12242 356 ISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSI 435 (498)
Q Consensus 356 r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~ 435 (498)
|+++|+.+..+..+..++.+.+.... ..+..... .++.++......+.......|..|++.|+++.|+.+..
T Consensus 275 r~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~-~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 346 (399)
T PRK05122 275 RLGGLRVAIVSLLVEILGLLLLWLAP-------SPWMALIG-AALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVF 346 (399)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHhc-------cHHHHHHH-HHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 99999988777766666655544321 11122222 22222222223345455667888999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHhccCCCC
Q psy12242 436 NWTANFIVGLGFLPIESIIHG-YVFTIFAVLQAMFVLFIYKKVPETKN 482 (498)
Q Consensus 436 ~~~~~~~~~~~~~~l~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (498)
..++..+++.+.|.+.+..++ ..+.+.+++++++.++.+. .+++++
T Consensus 347 ~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 393 (399)
T PRK05122 347 LDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWL-LYRRAP 393 (399)
T ss_pred HHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-hccccc
Confidence 999999999999999998886 4455555555555544443 444333
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=265.86 Aligned_cols=382 Identities=18% Similarity=0.187 Sum_probs=263.9
Q ss_pred HHHHHHHHHhhhhhccccccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhH
Q psy12242 28 KLAFAISASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAAT 107 (498)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~ 107 (498)
+.+.......+. .+..+++....+...|.+.++++ .++.+. +++.+.+.++..+++++.
T Consensus 14 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~----~~~~~~~~~~~~~~~~~~ 72 (398)
T TIGR00895 14 YQWRAIILSFLI-MLMDGYDLAAMGFAAPAISAEWG----------------LDPVQL----GFLFSAGLIGMAFGALFF 72 (398)
T ss_pred hHHHHHHHHHHH-HHHHHHHHHHHHhhHHHHhhccC----------------CCHHHH----HHHHHHHHHHHHHHHHHh
Confidence 344444555555 56677777777778888888877 787777 999999999999999999
Q ss_pred HHHHHhhccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHHHH
Q psy12242 108 GYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLV 187 (498)
Q Consensus 108 g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~ 187 (498)
|+++||+|||+.+..+.++.+++.++..++ ++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+
T Consensus 73 g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 149 (398)
T TIGR00895 73 GPLADRIGRKRVLLWSILLFSVFTLLCALA---TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCG 149 (398)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHc---cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhH
Confidence 999999999999999999999999999988 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCcccCCCCchhHHHHhhhHHHH-HHHhhcccccCChhhHHHhcCCHHHHHHHHHhhcCCchhHHHHH
Q psy12242 188 ITISIVISQILGLGGLLGTADGWPLLLAFTLVPGI-YQMITLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDEMD 266 (498)
Q Consensus 188 ~~~g~~~~~~i~~~~~~~~~~~wr~~f~~~~~~~~-~~~~~~~~~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 266 (498)
..+|..+++.+ .+.+.+..+||+.|++.++..+ ..++...++||+|++. .++ ++++..+..++.......+.+.
T Consensus 150 ~~~g~~~~~~~--~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~- 224 (398)
T TIGR00895 150 YPIGAAVGGFL--AGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFL-VSK-RPETVRRIVNAIAPQMQAEAQS- 224 (398)
T ss_pred HHHHHHHHHHH--HHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCChHH-Hhc-CHHHHHHHHHHHHHhccccccc-
Confidence 99999999984 3466677899999998854444 4445556789988764 222 3333333322221111000000
Q ss_pred HHHHhHHhhhcCCCch-hhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHH
Q psy12242 267 EMRAEYESIKLIPKVS-LREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVV 345 (498)
Q Consensus 267 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 345 (498)
+. ++++.+...... .+.+++++ ..+.........+. ..........+.|++.++.|.++.+.+.......++.++
T Consensus 225 ~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 300 (398)
T TIGR00895 225 AL--PEQKATQGTKRSVFKALFQGK-TARITVLLWLLYFM-LLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVI 300 (398)
T ss_pred cc--cccccccchhhHHHHHHhcch-hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 00 000000011111 22233332 22222222222222 222344555666778888899999999999999999999
Q ss_pred HHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChh
Q psy12242 346 MTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSAR 425 (498)
Q Consensus 346 ~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 425 (498)
+.++.+++.||++||+ ......+..+....+... .. ....... ..+..+.......+...++..|.+|++.|
T Consensus 301 ~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~----~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 372 (398)
T TIGR00895 301 GSIIFGWLADRLGPRV-TALLLLLGAVFAVLVGST--LF----SPTLLLL-LGAIAGFFVNGGQSGLYALMALFYPTAIR 372 (398)
T ss_pred HHHHHHHHHhhcchHH-HHHHHHHHHHHHHHHHHH--hh----CHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcCCHHHH
Confidence 9999999999999983 333333333333322221 11 1111112 22222233333446677888999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHH
Q psy12242 426 PLATSLAVSINWTANFIVGLGFLPI 450 (498)
Q Consensus 426 ~~~~g~~~~~~~~~~~~~~~~~~~l 450 (498)
+++.|+.+....++..++|.+.|.+
T Consensus 373 g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 373 ATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 9999999999999999999998875
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-33 Score=268.89 Aligned_cols=377 Identities=14% Similarity=0.106 Sum_probs=265.5
Q ss_pred ccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhhHHHHHHH
Q psy12242 48 TGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFV 127 (498)
Q Consensus 48 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~ 127 (498)
........|.+.++++ .++.+. |++.+.+.+++.+++++.|+++||+|||+++..+.++.
T Consensus 33 ~~~~~~~~~~~~~~~~----------------~s~~~~----g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~ 92 (417)
T PRK10489 33 LGLLGVAVPVQIQMMT----------------GSTLQV----GLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTC 92 (417)
T ss_pred HHHHHHHHHHHHHHHH----------------CCHHHH----HHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHH
Confidence 3444556677777766 666666 99999999999999999999999999999999988888
Q ss_pred HHHHHHHhhhh--ccchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHHHHHHHHHHHHHHHhcCcccC
Q psy12242 128 VLAALLQGFSK--AFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLLG 205 (498)
Q Consensus 128 ~~~~~~~~~~~--~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~ 205 (498)
+++.+..+... ..++++.+++.|++.|++.+...+...+++.|+.|+++|+++.++.....++|..+|+.+ ++.+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l--~g~l~ 170 (417)
T PRK10489 93 GLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPAL--GGLLI 170 (417)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHH--HHHHH
Confidence 77766554210 126788999999999999998889999999999999999999999999999999999994 34665
Q ss_pred CCCchhHHHHhhhHHHHHHHhhcccccCChhhHHHhcCCHHHHHHHHHhhcCCchhHHHHHHHHHhHHhhhcCCCchhhh
Q psy12242 206 TADGWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIPKVSLRE 285 (498)
Q Consensus 206 ~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (498)
+..+|++.|++.++..++..+..+.+||+++. +++++++ .++ .+..++.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~-----------------~~~-----------~~~~~~~ 219 (417)
T PRK10489 171 AAGGVAWNYGLAAAGTFITLLPLLRLPALPPP---PQPREHP-----------------LRS-----------LLAGFRF 219 (417)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhCCCCCCC---Ccccccc-----------------hHH-----------HHHHHHH
Confidence 66789999998877776666666667775421 0000000 000 0012334
Q ss_pred HhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHHhh-cCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehh
Q psy12242 286 MFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTM-AQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLL 364 (498)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~ 364 (498)
.++++..+...+..+ .... ......+.|.+.++ .|.++.+.+++.....++.+++.++.+++.||.++++.+.
T Consensus 220 ~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~ 293 (417)
T PRK10489 220 LLASPVVGGIALLGG-LLTM-----ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLML 293 (417)
T ss_pred HHcChHHHHHHHHHH-HHHH-----HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHH
Confidence 555554332222211 1111 12233344555554 7999999999999999999999999999999977777777
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHH
Q psy12242 365 IGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVG 444 (498)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~ 444 (498)
.+..+.+++.+.+... ..........++.+.......+...++..|..|++.||+++|+.+...+++..+++
T Consensus 294 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~ 365 (417)
T PRK10489 294 LSTLGSFLAVGLFGLM--------PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGA 365 (417)
T ss_pred HHHHHHHHHHHHHHcc--------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHH
Confidence 7666666555444332 11111111222222222222345567788999999999999999999999999999
Q ss_pred HhHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHH
Q psy12242 445 LGFLPIESIIHG-YVFTIFAVLQAMFVLFIYKKVPETKNKTQEEIAAM 491 (498)
Q Consensus 445 ~~~~~l~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (498)
.+.|.+.+..+. ..+...+.+..+..++.....+++++++++|.+++
T Consensus 366 ~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (417)
T PRK10489 366 ALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEVD 413 (417)
T ss_pred HHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccccccccccccCC
Confidence 999999998885 45555666666666666677788888877776654
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-31 Score=258.72 Aligned_cols=374 Identities=14% Similarity=0.087 Sum_probs=263.4
Q ss_pred chHHHHHHHHHhhhhhccccccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHH
Q psy12242 26 NGKLAFAISASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGA 105 (498)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~ 105 (498)
+++.++......+. .+...++...+.+..|.+.++++ .++.+. ++..+.+.+++.++++
T Consensus 8 ~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~----------------~s~~~~----~~~~~~~~~~~~~~~~ 66 (406)
T PRK15402 8 GRQALLFPLCLVLF-EFATYIANDMIQPGMLAVVEDFN----------------AGAEWV----PTSMTAYLAGGMFLQW 66 (406)
T ss_pred hHHHHHHHHHHHHH-HHHHHhhhhhHhcchHHHHHHhC----------------CCHHHH----HHHHHHHHHHHHHHHH
Confidence 45556666666666 67777777777788888999988 788887 9999999999999999
Q ss_pred hHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHH
Q psy12242 106 ATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQ 185 (498)
Q Consensus 106 ~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~ 185 (498)
+.|+++||+|||+++..+..+.+++.+++.++ ++++.+++.|+++|++.+...+...+++.|++|+++|.++.++..
T Consensus 67 ~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~---~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 143 (406)
T PRK15402 67 LLGPLSDRIGRRPVMLAGVAFFILTCLAILLA---QSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMA 143 (406)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH---ccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 99999999999999999999999999999998 899999999999999999888889999999999999999999998
Q ss_pred HHHHHHHHHHHHHhcCcccCCCCchhHHHHhhhHHHHHHHhh-cccccCChhhHHHhcCCHHHHHHHHHhhcCCchhHHH
Q psy12242 186 LVITISIVISQILGLGGLLGTADGWPLLLAFTLVPGIYQMIT-LPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDE 264 (498)
Q Consensus 186 ~~~~~g~~~~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~ 264 (498)
....+|..++|.++ +.+.+..+||+.|++.++..++..+. ....||+++. ++++.+
T Consensus 144 ~~~~~~~~~g~~i~--~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~----------------- 200 (406)
T PRK15402 144 NVALLAPLLGPLVG--AALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAGR----VGEKLS----------------- 200 (406)
T ss_pred HHHHHHHHHHHHHH--HHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCcc----cccccc-----------------
Confidence 88888999999853 35666789999999877776655543 3446766421 000000
Q ss_pred HHHHHHhHHhhhcCCCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHH-HhhcCCCchhHHHHHHHHHHHH
Q psy12242 265 MDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKI-FTMAQLSDTAAQWATLGMGTMN 343 (498)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~ 343 (498)
.++ ...+++++++++.++...+. ....... ......+.|.+ .+..|.++.+.+.......++.
T Consensus 201 ~~~-----------~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~ 264 (406)
T PRK15402 201 LKE-----------LGRDYKLVLKNRRFVAGALA----LGLVSLP-LLAWIALSPVILISGEQLSSYEYGLLQVPVFGAL 264 (406)
T ss_pred HHH-----------HHHHHHHHHcCcHHHHHHHH----HHHHHHH-HHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 000 01134566677654422221 1111111 12223334444 4667999888888877778888
Q ss_pred HHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCC
Q psy12242 344 VVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQS 423 (498)
Q Consensus 344 ~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 423 (498)
+++.++.+++.||+++|+.+..+.....++...+......... ..........+...+... ..+........ .+++
T Consensus 265 ~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~g~g~~~-~~~~~~~~~~~-~~~~ 340 (406)
T PRK15402 265 IAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSH--AYLWLTAGLSLYAFGIGL-ANAGLYRLTLF-SSDV 340 (406)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccc--cHHHHHHHHHHHHHHHHH-HhhhHHHHHhh-hccc
Confidence 9999999999999999998888777666666655543211111 111111122222222221 22333333323 3447
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHH
Q psy12242 424 ARPLATSLAVSINWTANFIVGLGFLPIESIIHGYVFTIFAVLQ 466 (498)
Q Consensus 424 ~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~ 466 (498)
++|+..++.+....++..+++.+.+.+.+..+...+....+++
T Consensus 341 ~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~ 383 (406)
T PRK15402 341 SKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLAN 383 (406)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHH
Confidence 8999999999999999999999999998887765444444433
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-31 Score=263.98 Aligned_cols=381 Identities=15% Similarity=0.129 Sum_probs=263.8
Q ss_pred HHhhhhhccccccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q psy12242 35 ASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERF 114 (498)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~ 114 (498)
.++++ .+...++...+++..|.+.++++ .++.+. +++.+.+.++..++.+++|+++||+
T Consensus 14 ~~~~~-~~~~~~~~~~~~~~~p~~~~~~g----------------~s~~~~----~~~~~~~~~~~~~~~~~~g~l~d~~ 72 (471)
T PRK10504 14 IVAFG-FFMQSLDTTIVNTALPSMAQSLG----------------ESPLHM----HMVIVSYVLTVAVMLPASGWLADRV 72 (471)
T ss_pred HHHHH-HHHHHHhHHHHHHHHHHHHHHhC----------------cCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445 56677788777788899998888 788887 9999999999999999999999999
Q ss_pred ccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHHHHHHHHHHH
Q psy12242 115 GRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVI 194 (498)
Q Consensus 115 Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~ 194 (498)
|||++++.+..+.+++.+++.++ ++++.+++.|+++|++.+...+...+++.|++|+++|+++.++.....++|..+
T Consensus 73 g~r~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 149 (471)
T PRK10504 73 GVRNIFFTAIVLFTLGSLFCALS---GTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLL 149 (471)
T ss_pred chHHHHHHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998888 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCcccCCCCchhHHHHhhhHHHHHHHhhc-ccccCChhhHHHhcCCHHHHHHHHH--------h-hcCCch---h
Q psy12242 195 SQILGLGGLLGTADGWPLLLAFTLVPGIYQMITL-PFCPESPKYILLSKGQELEAQRALS--------W-LRGTIE---V 261 (498)
Q Consensus 195 ~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~p~~l~~~~~~~~~a~~~~~--------~-~~~~~~---~ 261 (498)
+|.+ ++.+.++.+||+.|++......+..+.. ...|+.+. ++.+.+....... . ..+... .
T Consensus 150 g~~~--~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~----~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (471)
T PRK10504 150 GPAL--GGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYTM----QTRRFDLSGFLLLAVGMATLTLALDGSKGLGLS 223 (471)
T ss_pred hhHH--HHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCccc----cCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcc
Confidence 9994 4577777899999998776655544333 33454431 1111111110000 0 000000 0
Q ss_pred HHHHHH--------H--HHhHHhhhcCCCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHHh-hcCCCch
Q psy12242 262 HDEMDE--------M--RAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFT-MAQLSDT 330 (498)
Q Consensus 262 ~~~~~~--------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~ 330 (498)
...... . ...++.+.+++.. ..+++|++.++......+... .......++.|++.+ ..|.++.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~ 297 (471)
T PRK10504 224 PLAIAGLVAVGVVALLLYLLHARNNNRALF-SLKLFRTRTFSLGLAGSFAGR-----IGSGMLPFMTPVFLQIGLGFSPF 297 (471)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCcc-CHHHhcccchHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCCHH
Confidence 000000 0 0000111111111 234777775543222222111 123445566777776 4799999
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccc
Q psy12242 331 AAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGS 410 (498)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (498)
+.++......++.+++.++.+++.||+++|+.+..+..+.++....+.+.... ...+.......+...+.+ ...+
T Consensus 298 ~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~-~~~~ 372 (471)
T PRK10504 298 HAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALL----GWYYLLPFVLFLQGMVNS-TRFS 372 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhcccc----ccHHHHHHHHHHHHHHHH-HHHH
Confidence 99999988889899999999999999999999988877777665555432111 111111111111111111 2224
Q ss_pred hhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh
Q psy12242 411 IPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIHG 456 (498)
Q Consensus 411 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~ 456 (498)
.......+..|++.+++++|+.+....+|..+++.+.|.+.+..++
T Consensus 373 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 373 SMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred HHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4556677888999999999999999999999999999999887664
|
|
| >KOG0255|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-31 Score=264.07 Aligned_cols=382 Identities=19% Similarity=0.210 Sum_probs=276.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhh
Q psy12242 90 AVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLA 169 (498)
Q Consensus 90 g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~ 169 (498)
.+..+++++|..+|++++|+++||+|||+++++++++..++.++.+++ +|++.+++.|+++|++.++.......++.
T Consensus 121 ~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a---~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~ 197 (521)
T KOG0255|consen 121 ALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFA---PNYWMFLIFRFLSGFFGSGPLTVGFGLVA 197 (521)
T ss_pred HHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHh---CcHHHHHHHHHHHHhhccchhHHhHhhhe
Confidence 889999999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred ccCcccchhhhHhHHHHHHHHHHHHHHHHhcCcccCCCCchhHHHHhhhHHHHHHHhhcccccCChhhHHHhcCCHHHHH
Q psy12242 170 EISPVHLRGAVGTVYQLVITISIVISQILGLGGLLGTADGWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQ 249 (498)
Q Consensus 170 ~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~l~~~~~~~~~a~ 249 (498)
|++++++|+.+..+ ......+..+++++. .++.. +||+.+++..++.++.++.+++.||+|||+ ..+++.+++.
T Consensus 198 E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~--a~~~~--~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl-~~~g~~~~a~ 271 (521)
T KOG0255|consen 198 EIVSPKQRGLALTL-GGFFFVGGLMLPAGA--AYITR--DWRWLFWIISIPSGLFLLLWFLPPESPRWL-LSKGRIDEAI 271 (521)
T ss_pred eecCcchhhHHHHH-HHHHHHHHHHHHHHH--HHHHh--hHHHHHHHHHHHHHHHHHHHHccCcChHHH-HHcCchHHHH
Confidence 99999999999999 555556666665532 24432 999999999998888877777778999998 8899999998
Q ss_pred HHHHhhcCCc----hhHHHHHHH--HHhHHhhhcCCCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHHh
Q psy12242 250 RALSWLRGTI----EVHDEMDEM--RAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFT 323 (498)
Q Consensus 250 ~~~~~~~~~~----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (498)
+.+++....+ ...+..+.. .+.....+..++..+.++++.++.++.++.....++... ...+-..+...
T Consensus 272 ~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~-----~~y~gl~~~~~ 346 (521)
T KOG0255|consen 272 KILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFS-----LVYYGLSLNVS 346 (521)
T ss_pred HHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHh-----HHHHhhhhhhh
Confidence 8888864321 111111111 111111222233568889988877666666666664321 12222222223
Q ss_pred hcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q psy12242 324 MAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVF 403 (498)
Q Consensus 324 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (498)
..|.+. .......+..........+...|+.|||.....+..+..++++...+....... ....+...+...+
T Consensus 347 ~lg~~~---~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 419 (521)
T KOG0255|consen 347 GLGGNI---YLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGG----WLHWILPLLGKFF 419 (521)
T ss_pred hcCchH---HHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchh----HHHHHHHHHHHHH
Confidence 333332 234444555778888888999999999999999999999888888776543221 1111112222222
Q ss_pred HhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhccCCCCC
Q psy12242 404 FAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIHGYVFTIFAVLQAMFVLFIYKKVPETKNK 483 (498)
Q Consensus 404 ~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (498)
.+.+. .+.+.+..|++|+..|..+.+..+....++++++|.+.-..........+.+++....+...+...+.||++++
T Consensus 420 ~~~~~-~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~ 498 (521)
T KOG0255|consen 420 IGSAF-NLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQMFPLLGLILFGWLALLLGLLSLLLLPETKGK 498 (521)
T ss_pred HHHHH-HHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhcCcccCCC
Confidence 22223 44477899999999999999999999999999999887655442232333335666677777776889999998
Q ss_pred CHHHHHHHHH
Q psy12242 484 TQEEIAAMFR 493 (498)
Q Consensus 484 ~~~~~~~~~~ 493 (498)
.+.+..++.+
T Consensus 499 ~l~~t~~~~~ 508 (521)
T KOG0255|consen 499 PLPGTLLDAE 508 (521)
T ss_pred CCchhHHHHH
Confidence 8765544444
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-32 Score=262.41 Aligned_cols=406 Identities=14% Similarity=0.080 Sum_probs=257.4
Q ss_pred HHHHHHHhhhhhccccccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy12242 30 AFAISASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATGY 109 (498)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~ 109 (498)
+.......+. ......+........|.+++ ++ .++++. +++.+++.++..+++++.|+
T Consensus 26 ~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~-~g----------------~s~~~~----g~~~~~~~~~~~~~~~~~G~ 83 (438)
T TIGR00712 26 WQVFLGIFFG-YAAYYLVRKNFALAMPYLVE-QG----------------FSKGEL----GFALSAISIAYGFSKFIMGS 83 (438)
T ss_pred HHHHHHHHHH-HHHHHHHhccHHhhhHHHHH-cC----------------CCHhHh----HHHHHHHHHHHHHhhhccch
Confidence 3444444444 45555555555556677765 35 788888 99999999999999999999
Q ss_pred HHHhhccchhhHHHHHHHHHHHHHHhhhhc-cchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHHHHH
Q psy12242 110 VAERFGRKGGLLINNVFVVLAALLQGFSKA-FSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVI 188 (498)
Q Consensus 110 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~ 188 (498)
++||+|||+.+..+.++.+++.++.++.+. .++++.+.+.|++.|++.+...+.....+.|++|+++|++++++.+.+.
T Consensus 84 l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~ 163 (438)
T TIGR00712 84 VSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAH 163 (438)
T ss_pred hhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHH
Confidence 999999999999999999999888776521 1467788899999999999998988999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcccCCCCchhHHHHhhhHHHHHHH-hhcccccCChhhHHHhcCCHHHHHHHHHhhcCCchhHHHHHH
Q psy12242 189 TISIVISQILGLGGLLGTADGWPLLLAFTLVPGIYQM-ITLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDEMDE 267 (498)
Q Consensus 189 ~~g~~~~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~-~~~~~~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 267 (498)
++|..+++.+.. .......+||..|++.+++.++.. +..+++||+|+.. ...+.++. +++...+.
T Consensus 164 ~~g~~~~~~l~~-~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~-------~~~~~~~~---- 229 (438)
T TIGR00712 164 NIGGGIPPLLVL-LGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQSC--GLPPIEEY-------RNDYPDDY---- 229 (438)
T ss_pred HhHhHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhc--CCCCchhc-------cccccccc----
Confidence 999999887421 123335689999999877766644 4456678876431 11111100 00000000
Q ss_pred HHHhHHhhhcCCCch-hhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHHh-hcCCCchhHHHHHHHHHHHHHH
Q psy12242 268 MRAEYESIKLIPKVS-LREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFT-MAQLSDTAAQWATLGMGTMNVV 345 (498)
Q Consensus 268 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~ 345 (498)
.++ ++.+...+.. .+.+++++.++...+...+.. ........+.|.+.+ ..|+++.+++....+..+..++
T Consensus 230 -~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~i 302 (438)
T TIGR00712 230 -NEK-AEQELTAKEIFMQYVLPNKLLWYIAIANVFVY-----LLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIP 302 (438)
T ss_pred -ccc-cccccchHHHHHHHHccCchHHHHHHHHHHHH-----HHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHH
Confidence 000 0000000011 123556654443222211111 122344455566654 4699999999999999999999
Q ss_pred HHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChh
Q psy12242 346 MTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSAR 425 (498)
Q Consensus 346 ~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 425 (498)
+.++.+++.||+++++....+.....+..+.......... ...+........ .+....+..........|.+|++.|
T Consensus 303 g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~ 379 (438)
T TIGR00712 303 GTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPA--GNPLVDMICMIV-IGFLIYGPVMLIGLHALELAPKKAA 379 (438)
T ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCC--CchHHHHHHHHH-HHHHHccHHHHHHHHHHHhcChhhe
Confidence 9999999999996543333333222222111111111100 011111111111 1111122212223456799999999
Q ss_pred hHHHHHHHHHHHHHH-HHHHHhHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHhccCCC
Q psy12242 426 PLATSLAVSINWTAN-FIVGLGFLPIESIIHG-YVFTIFAVLQAMFVLFIYKKVPETK 481 (498)
Q Consensus 426 ~~~~g~~~~~~~~~~-~~~~~~~~~l~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (498)
+++.|+.+...+.++ +++|.+.|.+.|..|+ ..+.+..++.+++.+......+|.|
T Consensus 380 g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 380 GTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred eeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999888875 6899999999998875 4555666666666666666666654
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=264.05 Aligned_cols=407 Identities=10% Similarity=0.065 Sum_probs=260.4
Q ss_pred cchHHHHHHHHHhhhhhccccccccccCCcHHHHHHHHHhh--------------hhcccccCCCCCcccchhhHHHHHH
Q psy12242 25 LNGKLAFAISASALGSSFQHGYNTGVFNAPQKLISEWIVDV--------------LKNRSIADGTVNPVIEQSQVTMIFA 90 (498)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~g 90 (498)
..+.++.+..++.++ ......|...++.+.+.+.++-+.+ .+.+++ .+..+. |
T Consensus 13 ~~~~r~~i~~~~~~~-~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~s~~~~----g 79 (465)
T TIGR00894 13 FCSFRLFLSFLLHIC-NVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFK--------WSGALQ----G 79 (465)
T ss_pred ccCcHHHHHHHHHHH-HHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCC--------CCHHHh----h
Confidence 344556666666666 6667788887777777665521100 000111 455555 9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhhc
Q psy12242 91 VAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAE 170 (498)
Q Consensus 91 ~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~ 170 (498)
++.+.+.+++.+++++.|+++||+|||+++..+.++++++.+++.++. ..+++.+++.|+++|++.+...+....++.|
T Consensus 80 ~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~-~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~ 158 (465)
T TIGR00894 80 LILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAA-GGGIALVVFCRVIQGLAQGSVSPATHKIIVK 158 (465)
T ss_pred HHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHH-HcCchHHHHHHHHHHHhcccchhhHHHHHHh
Confidence 999999999999999999999999999999999999999988875531 1467889999999999999999999999999
Q ss_pred cCcccchhhhHhHHHHHHHHHHHHHHHHhcCcccCCC-CchhHHHHhhhHHHHHHHhhcc-cccCChhhHHHhcCCHHHH
Q psy12242 171 ISPVHLRGAVGTVYQLVITISIVISQILGLGGLLGTA-DGWPLLLAFTLVPGIYQMITLP-FCPESPKYILLSKGQELEA 248 (498)
Q Consensus 171 ~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~-~~wr~~f~~~~~~~~~~~~~~~-~~~e~p~~l~~~~~~~~~a 248 (498)
++|+++|++++++...+..+|.++++++. +.+.+. .+||+.|++.++..++..+.++ +.+|+|+.. ++.++++.
T Consensus 159 ~~~~~~r~~~~~~~~~~~~~g~~i~~~l~--~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~~~ 234 (465)
T TIGR00894 159 WAPPKERSRLLGMSTSGFQLGTFIFLPIS--GWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIH--PCISKFEK 234 (465)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccC--CCCCHHHH
Confidence 99999999999999999999999999953 456666 4999999998887776655444 456776421 11111111
Q ss_pred HHHHHhhcCCchhHHHHHHHHHhHHhhhcCCCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHH-hhcCC
Q psy12242 249 QRALSWLRGTIEVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIF-TMAQL 327 (498)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~ 327 (498)
+..++ . .+.+..+...+.+++++++++..+. .....+..... ......+.|.++ +..|+
T Consensus 235 -~~i~~-------------~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~lp~~l~~~~g~ 294 (465)
T TIGR00894 235 -KYINS-------------S-LQGQKGSTRQSLPIKAIPKSLPVWA----IWFAIFGHFWL-YTILPTYLPTFISWVLRV 294 (465)
T ss_pred -HHHHh-------------h-cccccCCCCCCCCHHHHhcCHHHHH----HHHHHHHHHHH-HHHHHHHHHHHHHHHhCc
Confidence 10000 0 0000001112335777777764432 22222222222 334445555554 66799
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhh---hhHHHHHHHH---HHHHHHHHhhhhhhHHHHHHHHHHHH
Q psy12242 328 SDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLI---GFMGVFVVTV---LLTIVMQFVEIFVMSIFCIILVIMFV 401 (498)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~---~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (498)
+..+.++......++.+++.++.|+++||+++|+.... ......++.. ...+...... ......+..+. ..
T Consensus 295 s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-l~ 371 (465)
T TIGR00894 295 SGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLS--AAFYLTIIILT-LA 371 (465)
T ss_pred ChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcC--CchHHHHHHHH-HH
Confidence 99999999999999999999999999999865533211 0111111111 1111111100 11112222222 22
Q ss_pred HHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhh--h-h-HHHHHHHHHHHHHHHHH
Q psy12242 402 VFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESII--H-G-YVFTIFAVLQAMFVLFI 473 (498)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~--g-~-~~~~~~~~~~~~~~~~~ 473 (498)
+.......+.......|..|+ .+|.+.|+.+..+.+++.++|.+.|.+.+.. + + ..+.+.+++.+++.++.
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~ 446 (465)
T TIGR00894 372 NAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFY 446 (465)
T ss_pred HHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHe
Confidence 222222223333445566664 8999999999999999999999999887653 2 2 34555555555554443
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-31 Score=261.76 Aligned_cols=373 Identities=15% Similarity=0.066 Sum_probs=227.3
Q ss_pred hccccccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhh
Q psy12242 41 SFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGL 120 (498)
Q Consensus 41 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l 120 (498)
.+...++.....+..|.+.++++ +++.+. +++.+.+.+++.+++++.|+++||+|||+++
T Consensus 45 ~~~~~~~~~~~~~~~~~l~~~~g----------------ls~~~~----g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~ 104 (476)
T PLN00028 45 FFTCFVSTFAAAPLLPIIRDNLN----------------LTKSDI----GNAGIASVSGSIFSRLAMGPVCDLYGPRYGS 104 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC----------------CCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhCChHHH
Confidence 34444444455666788888888 888888 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHHHHHHHHHHHHHHHhc
Q psy12242 121 LINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGL 200 (498)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~ 200 (498)
..+.++++++.++++++ ++++.++++|++.|++.+... ....++.|++|+++|++++++.....++|..+++.+..
T Consensus 105 ~~~~~~~~~~~~~~~~~---~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~ 180 (476)
T PLN00028 105 AFLLMLTAPAVFCMSLV---SSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMP 180 (476)
T ss_pred HHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998 899999999999999988654 45668899999999999999998777777766655321
Q ss_pred --Ccc-----cCCCCchhHHHHhhhHHHHHHHhhccccc-CChhhHHHhcCCHHHHHHHHHhhcCCchhHHHHHHHHHhH
Q psy12242 201 --GGL-----LGTADGWPLLLAFTLVPGIYQMITLPFCP-ESPKYILLSKGQELEAQRALSWLRGTIEVHDEMDEMRAEY 272 (498)
Q Consensus 201 --~~~-----~~~~~~wr~~f~~~~~~~~~~~~~~~~~~-e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 272 (498)
... .....+||+.|++.+++.++..+..++++ +.|+. +.++.+ ++.
T Consensus 181 ~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~------~~~~~~--------------------~~~ 234 (476)
T PLN00028 181 LVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPDG------NYRELK--------------------KSG 234 (476)
T ss_pred HHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCCC------chhhHH--------------------hcC
Confidence 001 11235899999998877766555444443 33311 000000 000
Q ss_pred HhhhcCCCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhh
Q psy12242 273 ESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLV 352 (498)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 352 (498)
+.++......+++.+++++.|.. ....+...........+.++++.++.|++..+++.+.....++.++++++.|+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~ 310 (476)
T PLN00028 235 TMPKDSFSKVLRYGVTNYRTWIL----ALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGY 310 (476)
T ss_pred ccccccHHHHHHHHHcCchhHHH----HHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 00000001134455666544322 11111111111222233344445667999999999999999999999999999
Q ss_pred hhhccCCcee----hhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHH
Q psy12242 353 LVEISGRKTL----LLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLA 428 (498)
Q Consensus 353 l~dr~g~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 428 (498)
++||++||+. .........+..+.+...... + ........+.++..+.. ...+..+.+..+.. ++.+|++
T Consensus 311 lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~-~---~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~-~~~~g~~ 384 (476)
T PLN00028 311 LSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRA-N---SLGAAIVVMILFSIFVQ-AACGATFGIVPFVS-RRSLGVI 384 (476)
T ss_pred HHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhccc-c---hHHHHHHHHHHHHHHHH-HhhhhhcccCcccC-hhhchhh
Confidence 9999987631 111111111111111111111 1 11111111112111111 11233444555654 4689999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhh-HHHHHHHHHHHHHHHHHH
Q psy12242 429 TSLAVSINWTANFIVGLGFLPIESIIHG-YVFTIFAVLQAMFVLFIY 474 (498)
Q Consensus 429 ~g~~~~~~~~~~~~~~~~~~~l~~~~g~-~~~~~~~~~~~~~~~~~~ 474 (498)
.|+.+..+.+|+.++|.+.+ ..+..++ ..+.+.+++.+++.++.+
T Consensus 385 ~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~ 430 (476)
T PLN00028 385 SGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVA 430 (476)
T ss_pred hhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHH
Confidence 99988777777777766543 1111223 345555555555544443
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-30 Score=251.34 Aligned_cols=344 Identities=18% Similarity=0.180 Sum_probs=248.1
Q ss_pred ccccccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhhH
Q psy12242 42 FQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLL 121 (498)
Q Consensus 42 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~ 121 (498)
+..........+..|.+.++++ .++.+. +++.+.+.++..++++++|+++||+|||+.+.
T Consensus 15 ~~~~~~~~~~~~~~p~~~~~~g----------------~s~~~~----g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~ 74 (385)
T TIGR00710 15 ILGPLGIDMYLPAFPEIAADLS----------------TPASIV----QMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLL 74 (385)
T ss_pred HHHHHHHHHhcccHHHHHHHhC----------------CCHHHH----HHHHHHHHHHHHHHHHhhhhHHHhcCChHHHH
Confidence 3345666667788899999988 788888 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHHHHHHHHHHHHHHHhcC
Q psy12242 122 INNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLG 201 (498)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~ 201 (498)
.+.++.+++.+++.++ ++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..+++.+ +
T Consensus 75 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~--~ 149 (385)
T TIGR00710 75 LGLFIFALSSLGLALS---NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLL--G 149 (385)
T ss_pred HHHHHHHHHHHHHHHH---ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHH--H
Confidence 9999999999999998 9999999999999999999999999999999999999999999999999999999984 3
Q ss_pred cccCCCCchhHHHHhhhHHHHHHHhh-cccccCChhhHHHhcCCHHHHHHHHHhhcCCchhHHHHHHHHHhHHhhhcCCC
Q psy12242 202 GLLGTADGWPLLLAFTLVPGIYQMIT-LPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIPK 280 (498)
Q Consensus 202 ~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (498)
+.+.+..+||+.|++.++..++..+. .++.||+++. +++++. ++ ..
T Consensus 150 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~--------------------~~--------~~ 196 (385)
T TIGR00710 150 GYILVWLSWHAIFAFLSLAGILLSALIFFILPETLPY-----EARIQI--------------------ST--------YF 196 (385)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCC-----cccCCH--------------------HH--------HH
Confidence 46666789999999877666555443 3456766421 000000 00 01
Q ss_pred chhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHH-hhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCC
Q psy12242 281 VSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIF-TMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGR 359 (498)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~ 359 (498)
...++.+++++.+...+...... ........+.|.+. ++.|.++.+.+.......++.+++.++.+++.||+++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~ 271 (385)
T TIGR00710 197 ETFLLLLKSKMFWGYALIYGASF-----GGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGA 271 (385)
T ss_pred HHHHHHHcCchhHHHHHHHHHHH-----HHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 13445666665443222211111 11223344445444 5789999999999999999999999999999999999
Q ss_pred ceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHH
Q psy12242 360 KTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTA 439 (498)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~ 439 (498)
|+.+..+..+..++.+.+........ .............+.......+.......|..| +.++++.++.+...+.+
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~ 347 (385)
T TIGR00710 272 KSLLRMGLILFAVSAVLLEITAILGL---GSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVL 347 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHH
Confidence 99888777666666655544322110 111122222222222222233555667678777 56899999999888876
Q ss_pred HHHHHHhHHHHHH
Q psy12242 440 NFIVGLGFLPIES 452 (498)
Q Consensus 440 ~~~~~~~~~~l~~ 452 (498)
+.+.+.+.+.+.+
T Consensus 348 g~i~~~~~~~~~~ 360 (385)
T TIGR00710 348 GAIVGYLVSLIHG 360 (385)
T ss_pred HHHHHHHHHhccc
Confidence 6677666764443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-30 Score=251.17 Aligned_cols=351 Identities=15% Similarity=0.075 Sum_probs=236.8
Q ss_pred cccccCCcHH-HHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhhHHHHH
Q psy12242 47 NTGVFNAPQK-LISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNV 125 (498)
Q Consensus 47 ~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~ 125 (498)
..+...+.+| .+.++++ .+..+. |++.+++.+++.++++++|+++||+||||++..+.+
T Consensus 30 ~~~~~~p~l~~~l~~~lg----------------~s~~~~----g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~ 89 (392)
T PRK12382 30 TVGLPLPVIPLFVHHDLG----------------FGNTMV----GIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGML 89 (392)
T ss_pred HHHHHhhhhhHHHHHhcC----------------CcHHHH----HHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHH
Confidence 3444445555 3567777 788888 999999999999999999999999999999999988
Q ss_pred HHHHHHHHHhhh---h--ccchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHHHHHHHHHHHHHHHhc
Q psy12242 126 FVVLAALLQGFS---K--AFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGL 200 (498)
Q Consensus 126 ~~~~~~~~~~~~---~--~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~ 200 (498)
...++.+....+ + ..++++.+++.|+++|++.+...+...+++.|++|+|+|++++++...+.+.|..++|+++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~- 168 (392)
T PRK12382 90 ACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLG- 168 (392)
T ss_pred HHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHH-
Confidence 877765543221 1 0157889999999999999999999999999999999999999999999999999999953
Q ss_pred CcccCCCCchhHHHHhhhHHHHHHHhhcccccCChhhHHHhcCCHHHHHHHHHhhcCCchhHHHHHHHHHhHHhhhcCCC
Q psy12242 201 GGLLGTADGWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIPK 280 (498)
Q Consensus 201 ~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (498)
+.+.+..+||..+.+..+..++........||.++ +++ ++
T Consensus 169 -~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-----------------------------------~~ 208 (392)
T PRK12382 169 -LLLHSHFGFAALALTTMVLPLLAWAFNGTVRKVPA----HAG-----------------------------------ER 208 (392)
T ss_pred -HHHHhccChHHHHHHHHHHHHHHHHHHHhccCCCC----Ccc-----------------------------------cC
Confidence 46667789998877665544433332222333210 000 00
Q ss_pred chhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCc
Q psy12242 281 VSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRK 360 (498)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~ 360 (498)
.+.++.++. .++..+....... .......+.+.+.++.+.+. .+.......++.+++.+..+++.||+++|
T Consensus 209 ~~~~~~~~~--~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~ 279 (392)
T PRK12382 209 PSLWSVVGL--IWKPGLGLALQGV-----GFAVIGTFVSLYFASKGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGV 279 (392)
T ss_pred chHHHHHHH--HHHhHHHHHHHHH-----HHhHHHHHHHHHHHhcCCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 011111111 1111111111111 12233444455555556653 45556667778889999999999999999
Q ss_pred eehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHH
Q psy12242 361 TLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTAN 440 (498)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~ 440 (498)
+.+..+..+..++.+.+.... ..+.......+ .+.......+.......|..|+++|+++.|+.+....++.
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l-~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~ 351 (392)
T PRK12382 280 KVAIVSLLVETVGLLLLWLAP-------TAWVALAGAAL-TGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAY 351 (392)
T ss_pred eehHHHHHHHHHHHHHHHHcc-------cHHHHHHHHHH-HHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 999888777776665544321 11112222222 2222222335555666788999999999999999999999
Q ss_pred HHHHHhHHHHHHhhhh-HHHHHHHHHHHHHHHHHHH
Q psy12242 441 FIVGLGFLPIESIIHG-YVFTIFAVLQAMFVLFIYK 475 (498)
Q Consensus 441 ~~~~~~~~~l~~~~g~-~~~~~~~~~~~~~~~~~~~ 475 (498)
.++|.+.|.+.|..|+ ..+.+.+++.+++.++.+.
T Consensus 352 ~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 387 (392)
T PRK12382 352 GVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTIL 387 (392)
T ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence 9999999999998886 4555555555555554443
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-30 Score=247.46 Aligned_cols=352 Identities=13% Similarity=0.082 Sum_probs=248.2
Q ss_pred hhhhhccccccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcc
Q psy12242 37 ALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGR 116 (498)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Gr 116 (498)
.++ .+..+.+....++.+|.+.++++ .++.+. |++.+.+.+++.+++++.|+++||+||
T Consensus 12 ~~~-~~~~~~~~~~~~~~lp~~~~~~~----------------~s~~~~----G~~~s~~~l~~~~~~~~~g~l~dr~g~ 70 (381)
T PRK03633 12 LCG-LLLLTLAIAVLNTLVPLWLAQEH----------------LPTWQV----GVVSSSYFTGNLVGTLLAGYVIKRIGF 70 (381)
T ss_pred HHH-HHHHHHhhhhHHHHHHHHHHHcC----------------CCHHHH----HHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 344 46667777878888898888877 788888 999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHHHHHHHHHHHHH
Q psy12242 117 KGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQ 196 (498)
Q Consensus 117 r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 196 (498)
|+.+..+.++.+++.++++++ +|++.++++|+++|++.+...+...+.+.+..++++|+++++....+.++|..+|+
T Consensus 71 k~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 147 (381)
T PRK03633 71 NRSYYLASLIFAAGCAGLGLM---VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQ 147 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998 99999999999999999999888888888999999999999999999999999999
Q ss_pred HHhcCcccCCCCchhHHHHhhhHHHHHHHhhcccccCChhhHHHhcCCHHHHHHHHHhhcCCchhHHHHHHHHHhHHhhh
Q psy12242 197 ILGLGGLLGTADGWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDEMDEMRAEYESIK 276 (498)
Q Consensus 197 ~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (498)
.++ +.+.+...|...+........+..+.....+|++ + +
T Consensus 148 ~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~--------------------------------~ 186 (381)
T PRK03633 148 LLV--SKVSTELMSVLPWVTGLVLAAILPLLFTRILNQQ-------A--------------------------------E 186 (381)
T ss_pred HHH--hcccccccchHHHHHHHHHHHHHHHHHhcccCCC-------C--------------------------------C
Confidence 954 3554433333332222111111111111111110 0 0
Q ss_pred cCCCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhc
Q psy12242 277 LIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEI 356 (498)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr 356 (498)
++++.+.++.++++.++... ....... ........+.|.+.++.|.++.+.+.......++.+++++..+++.||
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr 261 (381)
T PRK03633 187 NHDSTSIWPMLKLRQARLGV-NGCIISG----IVLGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADR 261 (381)
T ss_pred CCCCCCHHHHHHhcchHHHH-HHHHHHH----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 00112345566766544221 1111111 112233445677777789999899988888899999999999999999
Q ss_pred cCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHH
Q psy12242 357 SGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSIN 436 (498)
Q Consensus 357 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 436 (498)
+++|+.+..+.....++...+. .. ...... ..+ .+.......|.......|..|+++++...+..+...
T Consensus 262 ~~~~~~l~~~~~~~~~~~~~~~--~~-----~~~~~~---~~l-~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (381)
T PRK03633 262 FGRLLVLRVQVFVVILGSIAML--SQ-----AAMAPA---LFI-LGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSY 330 (381)
T ss_pred cCcHHHHHHHHHHHHHHHHHHh--hh-----HHHHHH---HHH-HHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 9999988777666665544332 10 111111 111 111222345777777889888888888888888888
Q ss_pred HHHHHHHHHhHHHHHHhhhh-HHHHHHHHHHHHH
Q psy12242 437 WTANFIVGLGFLPIESIIHG-YVFTIFAVLQAMF 469 (498)
Q Consensus 437 ~~~~~~~~~~~~~l~~~~g~-~~~~~~~~~~~~~ 469 (498)
++|..++|.+.|.+.|..++ +.+.+.+.+.++.
T Consensus 331 ~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~ 364 (381)
T PRK03633 331 TVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIY 364 (381)
T ss_pred HHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 89999999999999998886 4455544444433
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-31 Score=255.60 Aligned_cols=349 Identities=11% Similarity=0.050 Sum_probs=252.0
Q ss_pred ccccccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhhH
Q psy12242 42 FQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLL 121 (498)
Q Consensus 42 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~ 121 (498)
+...+.........|....+++ .++.+. |++.+++.++..++++++|+++||+|||++++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~----------------~s~~~~----g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~ 68 (365)
T TIGR00900 9 LISLIGTAITQVALPLYVLAGT----------------GSASVL----SLAALAGMLPYVVLSPIAGALADRYDRKKVMI 68 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh----------------ccHHHH----HHHHHHHHHHHHHHHHhhhHHHHhhchhHHHH
Confidence 3344445555566677766666 677777 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhccc-----hhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHHHHHHHHHHHHH
Q psy12242 122 INNVFVVLAALLQGFSKAFS-----SYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQ 196 (498)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 196 (498)
.+.++..++.++..++ + +++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.++++
T Consensus 69 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 145 (365)
T TIGR00900 69 GADLIRAVLVAVLPFV---ALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGP 145 (365)
T ss_pred HHHHHHHHHHHHHHHH---HHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHH
Confidence 9999999998888887 5 8999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCcccCCCCchhHHHHhhhHHHHHHHhhcccc--cCChhhHHHhcCCHHHHHHHHHhhcCCchhHHHHHHHHHhHHh
Q psy12242 197 ILGLGGLLGTADGWPLLLAFTLVPGIYQMITLPFC--PESPKYILLSKGQELEAQRALSWLRGTIEVHDEMDEMRAEYES 274 (498)
Q Consensus 197 ~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~--~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (498)
.++ +.+.+..+||+.|++.++..++..+..+++ ||+++. ++++.+ + +..+
T Consensus 146 ~l~--~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~---------------~---~~~~---- 197 (365)
T TIGR00900 146 GIG--GLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAAS----EIQALS---------------N---AVLR---- 197 (365)
T ss_pred HHH--HHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCCc----cccccc---------------h---hHHH----
Confidence 953 466667899999988877665554433332 332210 000000 0 0000
Q ss_pred hhcCCCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHHhh-cCCCchhHHHHHHHHHHHHHHHHHhhhhh
Q psy12242 275 IKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTM-AQLSDTAAQWATLGMGTMNVVMTLVSLVL 353 (498)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l 353 (498)
+.+...+++++++..+........... ........+.|++.++ .|.++.+.+.......++.+++.++.+++
T Consensus 198 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 270 (365)
T TIGR00900 198 ---DTREGIKFVLKNPLLRTLLLLALLFNL----VFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLL 270 (365)
T ss_pred ---HHHhHHHHHHcCcHHHHHHHHHHHHHH----HHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001134556666644432222222211 1122232555666654 79999999999999999999999999999
Q ss_pred hhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHH
Q psy12242 354 VEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAV 433 (498)
Q Consensus 354 ~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~ 433 (498)
.||.+||+.+..+..+.++....+..... +........+..+.......+...++..|..|++.|+++.|+.+
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 343 (365)
T TIGR00900 271 GRYFKRMALMTGAIFVIGLAILVVGLTPP-------NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQF 343 (365)
T ss_pred HHHhchhHHHHHHHHHHHHHHHHHHhhch-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999998887766665555554443211 11222222223333333345667778889999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHhhh
Q psy12242 434 SINWTANFIVGLGFLPIESIIH 455 (498)
Q Consensus 434 ~~~~~~~~~~~~~~~~l~~~~g 455 (498)
...+++..++|.+.|.+.|..|
T Consensus 344 ~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 344 SLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999988653
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-32 Score=263.09 Aligned_cols=390 Identities=14% Similarity=0.071 Sum_probs=248.8
Q ss_pred HHHHHHHHhhhhhccccccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhHH
Q psy12242 29 LAFAISASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATG 108 (498)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g 108 (498)
.|.++....+. ......+...++...|.+.++++ .++++. +++.+.+.++..++.++.|
T Consensus 17 ~w~i~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~g----------------~s~~~~----~~~~s~~~~~~~~~~~~~G 75 (455)
T TIGR00892 17 GWVVLGATFVS-IGFSYAFPKAVTVFFKELQQIFQ----------------ATYSET----AWISSIMLAVLYAGGPISS 75 (455)
T ss_pred chHHHHHHHHH-HHHHHhhhcchhhhHHHHHHHhC----------------cchhHH----HHHHHHHHHHHHHhhHHHH
Confidence 34444444444 33222233445667788999888 788888 9999999999999999999
Q ss_pred HHHHhhccchhhHHHHHHHHHHHHHHhhhhccchhHHHHH-HHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHHHH
Q psy12242 109 YVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIIL-GRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLV 187 (498)
Q Consensus 109 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~ 187 (498)
+++||+|||++++.+.++.++++++++++ ++++.+++ .|++.|++.+...+...+++.++++ ++|+++.++...+
T Consensus 76 ~l~dr~g~r~~l~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~ 151 (455)
T TIGR00892 76 ILVNRFGCRPVVIAGGLLASLGMILASFS---SNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAG 151 (455)
T ss_pred HHHHHcCchHHHHhhHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhc
Confidence 99999999999999999999999999998 88888765 5799999998877777888899996 7899999999999
Q ss_pred HHHHHHHHHHHhcCcccCCCCchhHHHHhhhHHHHHHHhhcccc-cCChhhHHHhcCCHHHHHHHHHhhcCCchhHHHHH
Q psy12242 188 ITISIVISQILGLGGLLGTADGWPLLLAFTLVPGIYQMITLPFC-PESPKYILLSKGQELEAQRALSWLRGTIEVHDEMD 266 (498)
Q Consensus 188 ~~~g~~~~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 266 (498)
..+|..++|++ .+.+.+..+||+.|++.+++.++..+..+++ ++.+.. ++.+.++ .+ ....... .++.
T Consensus 152 ~~~g~~~~~~l--~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~~-~~---~~~~~~~-~~~~- 220 (455)
T TIGR00892 152 SPVFLSTLAPL--NQYLFESFGWRGSFLILGGLLLHCCVCGALMRPVGPSQ---RVSKSKS-KE---GLPPDGS-TKKL- 220 (455)
T ss_pred ccHHHHHHHHH--HHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCCCCccc---ccccccc-cc---cCCCCCc-cccc-
Confidence 99999999884 3466667899999999887766554443333 322110 0000000 00 0000000 0000
Q ss_pred HHHHhHHhhhcCCCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHH
Q psy12242 267 EMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVM 346 (498)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 346 (498)
+.....++. .+....++++++.++... ...+..... ......+.+.+.++.|++..+++......+++.+++
T Consensus 221 --~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~l~~~~-~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~ 292 (455)
T TIGR00892 221 --SKKSTAEKI-NRFLDFSLFTHRGFLVYL----SGNVIMFLG-FFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFA 292 (455)
T ss_pred --cccchhhhh-hhhcchHHhcCchHHHHH----HHHHHHHHH-ccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 000000000 000112456666443222 222222222 223334445555678999999999999999999999
Q ss_pred HHhhhhhhhcc--CCceehhhhhHHH--HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCC
Q psy12242 347 TLVSLVLVEIS--GRKTLLLIGFMGV--FVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQ 422 (498)
Q Consensus 347 ~~~~g~l~dr~--g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 422 (498)
+++.+++.||. ++++......... .+..+.+.. . .....+....+..+.......+...++..|.+|+
T Consensus 293 ~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~---~-----~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~ 364 (455)
T TIGR00892 293 RPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCAL---A-----GDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGA 364 (455)
T ss_pred HHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHH---h-----chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhH
Confidence 99999999974 3333332222222 222222111 1 1111222222223333333445667788899999
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhh-h-HHHHHHHHHHHHHH
Q psy12242 423 SARPLATSLAVSINWTANFIVGLGFLPIESIIH-G-YVFTIFAVLQAMFV 470 (498)
Q Consensus 423 ~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g-~-~~~~~~~~~~~~~~ 470 (498)
+.+++++|+.+....++++++|.+.|.+.+..+ + ..+.+.+++.+++.
T Consensus 365 ~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~ 414 (455)
T TIGR00892 365 QRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAG 414 (455)
T ss_pred HHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHH
Confidence 999999999999999999999999999998875 4 34555454444433
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=266.28 Aligned_cols=385 Identities=15% Similarity=0.098 Sum_probs=267.7
Q ss_pred HHHHhhhhhccccccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy12242 33 ISASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAE 112 (498)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~d 112 (498)
...++++ .+...+|....+...|.+.++++ .+..+. +++.+.+.++..++.++.|+++|
T Consensus 4 ~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~g----------------~s~~~~----~~~~~~~~~~~~~~~~~~g~l~d 62 (485)
T TIGR00711 4 TIVLMLG-TFMAVLDSTIVNVAIPTIAGDLG----------------SSLSQV----QWVITSYMLANAISIPLTGWLAK 62 (485)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHhcC----------------CChhhh----hHHHHHHHHHHHHHHHhHHHHHH
Confidence 3445556 67788888888888999999988 777777 99999999999999999999999
Q ss_pred hhccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHHHHHHHHH
Q psy12242 113 RFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISI 192 (498)
Q Consensus 113 r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~ 192 (498)
|+|||++++.+.++..++.++++++ ++++.++++|+++|++.+...+...+++.|++|+++|++++++...+..+|.
T Consensus 63 r~g~r~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~ 139 (485)
T TIGR00711 63 RFGTRRLFLISTFAFTLGSLLCGVA---PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAP 139 (485)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHhCc---CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcccCCCCchhHHHHhhhHHHHHHHhh-cccccCChhhHHHhcCCHHHHHHH------------HHhhcCCc
Q psy12242 193 VISQILGLGGLLGTADGWPLLLAFTLVPGIYQMIT-LPFCPESPKYILLSKGQELEAQRA------------LSWLRGTI 259 (498)
Q Consensus 193 ~~~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~l~~~~~~~~~a~~~------------~~~~~~~~ 259 (498)
.++|. +++.+.++.+||+.|++.+.+.++..+. .++.||+++. ++++.+..... ..+-....
T Consensus 140 ~~g~~--~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~ 214 (485)
T TIGR00711 140 ALGPT--LGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPA---ASENFDFLGLLLLSVGLGSLLYGLSEGPERG 214 (485)
T ss_pred hhhhc--cHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCcccc---ccCCCcHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 99999 5567888899999999987666555433 3446665321 11111111100 00000000
Q ss_pred hhHH-HHHHH---------HHhHHhhhcCCCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHH-hhcCCC
Q psy12242 260 EVHD-EMDEM---------RAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIF-TMAQLS 328 (498)
Q Consensus 260 ~~~~-~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~ 328 (498)
..++ +.... .....+.+++++....++++++.++...+..+...+ . .....++.|.+. +..|++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~p~~~~~~~g~s 289 (485)
T TIGR00711 215 WFDSNEILILSITGLVAIIAFVVWELTDDNPLVDLRLFKYRNFTIGCVYMSLLGL----G-LYGSFYLLPLYLQQVLGYT 289 (485)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHcCCCCccCHHHHcCCChHHHHHHHHHHHH----H-HHHHHHHHHHHHHHhcCCC
Confidence 0000 00000 000001111112222456777765543222222222 1 233444555555 457999
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCc
Q psy12242 329 DTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGP 408 (498)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (498)
+.+++....+..++.+++.++.+++.||++||+.+..+..+.+++...+.+.... + ...........+...+.+. .
T Consensus 290 ~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~l~g~g~~~-~ 365 (485)
T TIGR00711 290 ALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTP-D--TPFLAIALPQFIRGFGMGC-F 365 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCC-C--CCHHHHHHHHHHHHHHHHH-H
Confidence 9999999999999999999999999999999998888777776666555421111 1 1111111111222222211 1
Q ss_pred cchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhh
Q psy12242 409 GSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIH 455 (498)
Q Consensus 409 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g 455 (498)
.+.......+..|+++++++.|+.+....+|+.+++.+.+.+.+...
T Consensus 366 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~~~ 412 (485)
T TIGR00711 366 FMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTNRT 412 (485)
T ss_pred HHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333445577899999999999999999999999999999987543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-32 Score=259.20 Aligned_cols=370 Identities=15% Similarity=0.074 Sum_probs=250.9
Q ss_pred hccccccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhh
Q psy12242 41 SFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGL 120 (498)
Q Consensus 41 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l 120 (498)
++...++....+...|.+.++++ .++.+. |++.+++.++..+++++.|+++||+|||+.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~g----------------~s~~~~----g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~ 63 (379)
T TIGR00881 4 YAAYYLVRKNFALAMPYLVEEIG----------------LSKTDL----GLLLSSFSIAYGISKFVMGSVSDRSNPRVFL 63 (379)
T ss_pred hhHHHHhHHhhhhhhHHHHHHhC----------------CCHhHH----HHHHHHHHHHHHhhhhhhhHHHHhhCCeehh
Confidence 34455667777788899999888 788888 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHHHHHHHHHHHHHHHhc
Q psy12242 121 LINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGL 200 (498)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~ 200 (498)
..+.++.+++.++++++ ++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++++ .
T Consensus 64 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~-~ 139 (379)
T TIGR00881 64 PIGLILCAIVNLFFGFS---TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPL-V 139 (379)
T ss_pred HHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHH-H
Confidence 99999999999999999 8999999999999999999999999999999999999999999999999999999942 2
Q ss_pred CcccCCCCchhHHHHhhhHHHHHH-HhhcccccCChhhHHHhcCCHHHHHHHHHhhcCCchhHHHHHHHHHhHHhhhcCC
Q psy12242 201 GGLLGTADGWPLLLAFTLVPGIYQ-MITLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIP 279 (498)
Q Consensus 201 ~~~~~~~~~wr~~f~~~~~~~~~~-~~~~~~~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (498)
...+.+..+||+.|++.+++.++. ++..++.||+|+.. +.++.++. ..+. . + +.+++.+++.+..
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-------~~~~-~--~--~~~~~~~~~~~~~ 205 (379)
T TIGR00881 140 LFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSC--GLPPAEEM-------PNEE-P--D--GDAEKKEEELTKK 205 (379)
T ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCCcccc--ccCccccC-------cccc-c--c--cccccccccccch
Confidence 224455679999998877665554 44455677765321 10000000 0000 0 0 0000000001111
Q ss_pred CchhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHH-HhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccC
Q psy12242 280 KVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKI-FTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISG 358 (498)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g 358 (498)
+...+++++++..+...+.. +..... ......+.|.+ .+..|+++.+.+.......++.+++.++.+++.||..
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~ 280 (379)
T TIGR00881 206 QIFLQYVLLNKVLWYISLGY----VFVYVV-RTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLF 280 (379)
T ss_pred HHHHHHHHhcchHHHHHHHH----HHHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHc
Confidence 22345566666444222221 111111 22333444444 4667999999999999999999999999999999864
Q ss_pred CceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHH
Q psy12242 359 RKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWT 438 (498)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~ 438 (498)
+++...............+........ ..... ........+....+..+....+..|..|++.|+++.|+.+....+
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~ 357 (379)
T TIGR00881 281 NGRRGPLAVFFMALIIVSLLVYWLNPA--ANPLM-DLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYL 357 (379)
T ss_pred CCcchHHHHHHHHHHHHHHHHHhcCcc--hhHHH-HHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhh
Confidence 433322222222221111111111000 11111 112222222233334445566788999999999999999999999
Q ss_pred HHHHHHHhHHHHHHhhhh
Q psy12242 439 ANFIVGLGFLPIESIIHG 456 (498)
Q Consensus 439 ~~~~~~~~~~~l~~~~g~ 456 (498)
+..++|.+.|.+.|..|+
T Consensus 358 g~~~~~~~~g~l~~~~g~ 375 (379)
T TIGR00881 358 GGILAGLPLGYLADGFGW 375 (379)
T ss_pred hhhhhhhhHHHHHHhhcc
Confidence 999999999999998775
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-30 Score=249.91 Aligned_cols=340 Identities=16% Similarity=0.115 Sum_probs=244.4
Q ss_pred ccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhhHHHHH
Q psy12242 46 YNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNV 125 (498)
Q Consensus 46 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~ 125 (498)
+....+.+..|.+.++++ .++.+. +++.+++.+++.++++++|+++||+|||+.+..+..
T Consensus 20 ~~~~~~~p~~~~i~~~~~----------------~s~~~~----g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~ 79 (401)
T PRK11043 20 LATDMYLPAFKAIQADLQ----------------TSASAV----SASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLS 79 (401)
T ss_pred HHHHHHHhhHHHHHHHHC----------------CCHHHH----HHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHH
Confidence 445555667788888888 788888 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHHHHHHHHHHHHHHHhcCcccC
Q psy12242 126 FVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLLG 205 (498)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~ 205 (498)
+..++.+++.++ ++++.+++.|+++|++.+...+...+++.|++|++++++..+.......+|..++|.+ ++.+.
T Consensus 80 ~~~~~~~~~~~~---~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i--~~~l~ 154 (401)
T PRK11043 80 LFALGSLGMLWV---ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLL--GAWLL 154 (401)
T ss_pred HHHHHHHHHHHh---cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 999999999998 8999999999999999888888888999999999999999999988889999999984 34666
Q ss_pred CCCchhHHHHhhhHHHHHHHhhcccccCChhhHHHhcCCHHHHHHHHHhhcCCchhHHHHHHHHHhHHhhhcCCCchhhh
Q psy12242 206 TADGWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIPKVSLRE 285 (498)
Q Consensus 206 ~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (498)
+..+||+.|++.++..++..+..++++|+++. ++++ +++.++++
T Consensus 155 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~--------------------------------~~~~~~~~ 198 (401)
T PRK11043 155 NHFGWQAIFATLFAITLLLILPTLRLKPSKKA----RKQS--------------------------------QDALTFKQ 198 (401)
T ss_pred hcCChHHHHHHHHHHHHHHHHHHHHcCCCCCc----cccc--------------------------------hHHHHHHH
Confidence 77899999998877766665555555554310 0000 01123456
Q ss_pred HhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhh
Q psy12242 286 MFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLI 365 (498)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~ 365 (498)
+++++.++...+...... ........+.|.+.++.|+++.+.++......++.+++.+..+++.||+++|+....
T Consensus 199 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~ 273 (401)
T PRK11043 199 LLKSKTYLGNVLIFAACS-----AAFFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPW 273 (401)
T ss_pred HHcChhHHHHHHHHHHHH-----HHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 666665443222211111 112334445667777789999999988888888899999999999999999887655
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHH
Q psy12242 366 GFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGL 445 (498)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~ 445 (498)
.....+++.+.+........ ...+.. .......+.......+.......|..| +.++++.|+.+.....++..++.
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~ 349 (401)
T PRK11043 274 LLVLFAVSVIAIWLASLLSH--PSLVPL-LIPFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASL 349 (401)
T ss_pred HHHHHHHHHHHHHHHHHhcc--CcHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHH
Confidence 55554444433332221111 111111 122222222333344555556566666 56999999999999999999999
Q ss_pred hHHHHHHhhh
Q psy12242 446 GFLPIESIIH 455 (498)
Q Consensus 446 ~~~~l~~~~g 455 (498)
+.|.+.+...
T Consensus 350 ~~g~l~~~~~ 359 (401)
T PRK11043 350 LVSALISTPL 359 (401)
T ss_pred HHHHccCCCh
Confidence 9998877443
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-30 Score=247.38 Aligned_cols=367 Identities=13% Similarity=0.101 Sum_probs=245.7
Q ss_pred HhhhhhccccccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Q psy12242 36 SALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFG 115 (498)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G 115 (498)
..+. .+....+.....+.+|.+.++++ .+.++. ++..+++.++++++++++|+++||+|
T Consensus 21 ~~~~-~~~~~~~~~~~~p~l~~i~~~~~----------------~~~~~~----~~~~s~~~~~~~~~~~~~G~l~dr~G 79 (413)
T PRK15403 21 LILY-DFAAYLTTDLIQPGIINVVRDFN----------------ADVSLA----PASVSLYLAGGMALQWLLGPLSDRIG 79 (413)
T ss_pred HHHH-HHHHHHHHHhhccCHHHHHHHhC----------------CCHHHH----HHHHHHHHHHHHHHHHhhhHHHHHcC
Confidence 3444 46666777788889999999998 788887 99999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHHHHHHHHHHHH
Q psy12242 116 RKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVIS 195 (498)
Q Consensus 116 rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~ 195 (498)
||++++.+.++++++++++.++ ++++.++++|+++|++.+...+...+++.|++|+++|++++++......+|..++
T Consensus 80 rr~~l~~~~~~~~~~~~~~~~a---~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 156 (413)
T PRK15403 80 RRPVLITGALIFTLACAATLFT---TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIG 156 (413)
T ss_pred chHHHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 9999999999999999987777778889999999999999999999999999999
Q ss_pred HHHhcCcccCCCCchhHHHHhhhHHHHHHHhh-cccccCChhhHHHhcCCHHHHHHHHHhhcCCchhHHHHHHHHHhHHh
Q psy12242 196 QILGLGGLLGTADGWPLLLAFTLVPGIYQMIT-LPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDEMDEMRAEYES 274 (498)
Q Consensus 196 ~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (498)
|+++ +.+.++.+||+.|++.++..++..+. ++++||+++. ++++.+
T Consensus 157 ~~lg--~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~~----~~~~~~--------------------------- 203 (413)
T PRK15403 157 PLSG--AALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVKR----GAVPFS--------------------------- 203 (413)
T ss_pred HHHH--HHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCccc----cCCCCC---------------------------
Confidence 9854 45666789999999988776666544 4457887421 000000
Q ss_pred hhcCCCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHH-hhcCCCchhHHHHHHHHHHHHHHHHHhhhhh
Q psy12242 275 IKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIF-TMAQLSDTAAQWATLGMGTMNVVMTLVSLVL 353 (498)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l 353 (498)
.+...++++++++++.++...+.. .... ........+.|.+. +..|.++.+.++.......+.+++..+.+.+
T Consensus 204 -~~~~~~~~~~ll~~~~~~~~~l~~----~~~~-~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~ 277 (413)
T PRK15403 204 -AKSVLRDFRNVFRNRLFLTGAATL----SLSY-IPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARF 277 (413)
T ss_pred -hHHHHHHHHHHHcCHHHHHHHHHH----HHHH-HHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000012455677777554322221 1111 12233444556555 4568999999998888888888888888776
Q ss_pred hhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHH
Q psy12242 354 VEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAV 433 (498)
Q Consensus 354 ~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~ 433 (498)
.++..+++.......+..++..++........ .......+...++..+... ..|......-+. ....+|++.++.+
T Consensus 278 ~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~--~~~~~~~~~~~l~~~G~~~-~~p~~~~~al~~-~~~~~G~a~a~~~ 353 (413)
T PRK15403 278 VKDPTEPRFIWRAVPIQLVGLALLIVGNLLWP--HVWLWSVLGTSLYAFGIGL-IFPTLFRFTLFS-NNLPKGTVSASLN 353 (413)
T ss_pred hccCCchhHHHHHHHHHHHHHHHHHHHHHHcc--ccHHHHHHHHHHHHHHHHH-HhHHHHHHHhcc-CCCCCcHHHHHHH
Confidence 65544444332222233333322222111111 1111111222222222222 223333222111 2224799999999
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHH
Q psy12242 434 SINWTANFIVGLGFLPIESIIHGYVFTIFAVLQAMF 469 (498)
Q Consensus 434 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~ 469 (498)
.....+...++...+++.+......+...+.++.+.
T Consensus 354 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 389 (413)
T PRK15403 354 MVILMVMAVSVEIGRWLWFNGGRLPFHLLAVVAGVI 389 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 999999999999999887775555555555444443
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=4e-30 Score=249.30 Aligned_cols=369 Identities=15% Similarity=0.064 Sum_probs=247.8
Q ss_pred hccccccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhH-HHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchh
Q psy12242 41 SFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQV-TMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGG 119 (498)
Q Consensus 41 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~ 119 (498)
.+..+.......+.+|.+.++++ .++.+. ..+.|++.+++.++..++++++|+++||+|||+.
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~~g----------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~ 86 (408)
T PRK09874 23 CFLTGAAFSLVMPFLPLYVEQLG----------------VTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIM 86 (408)
T ss_pred HHHHHHHHHHhhhhHHHHHHHhC----------------CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHH
Confidence 34455555566667787777776 554443 2445899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHHHHHHHHHHHHHHHh
Q psy12242 120 LLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILG 199 (498)
Q Consensus 120 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~ 199 (498)
+..+.++.+++.+++.++ ++++.+++.|++.|++.+ ..+....++.|++|+++|+++.++...+..+|..+++.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~- 161 (408)
T PRK09874 87 LLRSALGMGIVMVLMGLA---QNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLA- 161 (408)
T ss_pred HHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHH-
Confidence 999999999999988888 899999999999999865 567778889999999999999999999999999999985
Q ss_pred cCcccCCCCchhHHHHhhhHHHHHHHhh-cccccCChhhHHHhcCCHHHHHHHHHhhcCCchhHHHHHHHHHhHHhhhcC
Q psy12242 200 LGGLLGTADGWPLLLAFTLVPGIYQMIT-LPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLI 278 (498)
Q Consensus 200 ~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (498)
.+.+.+..+||+.|++.++..++..+. .+++||+++. ++++++ . +
T Consensus 162 -~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~------------------~---~-------- 207 (408)
T PRK09874 162 -GGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQP----VSKKEM------------------L---H-------- 207 (408)
T ss_pred -HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCccc----ccchhh------------------h---H--------
Confidence 346666789999999887766655443 3445655311 000000 0 0
Q ss_pred CCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHHhhcCCCch----hHHHHHHHHHHHHHHHHHhhhhhh
Q psy12242 279 PKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTMAQLSDT----AAQWATLGMGTMNVVMTLVSLVLV 354 (498)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~~~~~~~~~~~~~~~~g~l~ 354 (498)
..+..+.+++++.+.......... ... ......+.+.+..+.+.+.. ..+......+++.+++.+..+++.
T Consensus 208 -~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~ 282 (408)
T PRK09874 208 -MREVVTSLKNPKLVLSLFVTTLII---QVA-TGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLG 282 (408)
T ss_pred -HHHHHHhCcCCchHHHHHHHHHHH---HHH-HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001122344443332222211111 111 11222223333333322222 234455566778888899999999
Q ss_pred hccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHH
Q psy12242 355 EISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVS 434 (498)
Q Consensus 355 dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~ 434 (498)
||++||+.+..+.....+..+.+.... ..+.. .......+.......+...+...+..|++.+++.+++.+.
T Consensus 283 dr~g~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 354 (408)
T PRK09874 283 DRIGPEKILITALIFSVLLLIPMSFVQ-------TPLQL-GILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQS 354 (408)
T ss_pred hccccchhHHHHHHHHHHHHHHHHHhc-------cHHHH-HHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHH
Confidence 999999988877766555444433211 11111 1222222333333445566666788898999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHhc
Q psy12242 435 INWTANFIVGLGFLPIESIIHG-YVFTIFAVLQAMFVLFIYKKV 477 (498)
Q Consensus 435 ~~~~~~~~~~~~~~~l~~~~g~-~~~~~~~~~~~~~~~~~~~~~ 477 (498)
...+|..++|.+.|.+.+..++ ..+.+.+++.+++.++.+...
T Consensus 355 ~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~ 398 (408)
T PRK09874 355 FRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSL 398 (408)
T ss_pred HHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998886 455666666666665555433
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.1e-30 Score=241.40 Aligned_cols=363 Identities=11% Similarity=0.108 Sum_probs=244.2
Q ss_pred cccccCCcHHHHHH-HHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhhHHHHH
Q psy12242 47 NTGVFNAPQKLISE-WIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNV 125 (498)
Q Consensus 47 ~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~ 125 (498)
.-.+.++..+.+.+ +++ ++++|. +++.+++.+++.++.++.|++.||+|+|+++.++.+
T Consensus 49 ~w~~~~~l~~~~~~~~~~----------------ls~~q~----g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~l 108 (462)
T PRK15034 49 VWMLFSAVTVNLNKIGFN----------------FTTDQL----FLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTA 108 (462)
T ss_pred HHHHHHHHHHHhhhhhcC----------------CCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 34445555677665 677 889888 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhh--ccchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHHHHHHHHHHHHHHHhcC--
Q psy12242 126 FVVLAALLQGFSK--AFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLG-- 201 (498)
Q Consensus 126 ~~~~~~~~~~~~~--~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~-- 201 (498)
++.+.+++.+++. ..++++.+++.|++.|++ +..++.....+++|+|+++||+++++.....++|..+++++...
T Consensus 109 l~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i 187 (462)
T PRK15034 109 ILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVI 187 (462)
T ss_pred HHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999888741 126899999999999998 66889999999999999999999999976666666655443210
Q ss_pred --------cc------cCCCCchhHHHHhhhHHHHHHHhhccc-ccCChhhHHHhcCCHHHHHHHHHhhcCCchhHHHHH
Q psy12242 202 --------GL------LGTADGWPLLLAFTLVPGIYQMITLPF-CPESPKYILLSKGQELEAQRALSWLRGTIEVHDEMD 266 (498)
Q Consensus 202 --------~~------~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 266 (498)
+. ..+..+||.++++.+++.++..+..++ .++.|.
T Consensus 188 ~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~------------------------------ 237 (462)
T PRK15034 188 FVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS------------------------------ 237 (462)
T ss_pred HHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc------------------------------
Confidence 00 012345888888877766655544433 333320
Q ss_pred HHHHhHHhhhcCCCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHH
Q psy12242 267 EMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVM 346 (498)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 346 (498)
++....+..+.+|+|+.|...++. +..+..+..+.++.|++.++ .++............+...+.
T Consensus 238 ---------~~~~~~~~~~vlk~~~~Wllslly-----~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~ 302 (462)
T PRK15034 238 ---------SRASIADQLPVLQRLHLWLLSLLY-----LATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIA 302 (462)
T ss_pred ---------cccCHHHHHHHhCCCchhHHHHHH-----HHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHH
Confidence 001112455678888665332222 22333455566666776654 344333333344556788889
Q ss_pred HHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH-HHHHHhcCccchhhhhhcccCCC---
Q psy12242 347 TLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIM-FVVFFAVGPGSIPWFLVSELFSQ--- 422 (498)
Q Consensus 347 ~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~--- 422 (498)
++++|+++||+|+++++..+...+.+....+........ ..+.......++ .....+.+. ...+-++.+.+|+
T Consensus 303 rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~--~~~~~~~~~~~~~l~~~~G~gn-gsvfk~ip~~f~~~~~ 379 (462)
T PRK15034 303 RSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTG--SGNFIAFYAVFMGLFLTAGLGS-GSTFQMIAVIFRQITI 379 (462)
T ss_pred HHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhcccc--ccHHHHHHHHHHHHHHHhcccc-hHHHHhhHHHHhhhhh
Confidence 999999999999999998888777666544333221100 011111111111 112222222 3344455565653
Q ss_pred ------------------ChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh--HHHHHHHHHHHHHHHHHHHhcc
Q psy12242 423 ------------------SARPLATSLAVSINWTANFIVGLGFLPIESIIHG--YVFTIFAVLQAMFVLFIYKKVP 478 (498)
Q Consensus 423 ------------------~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~--~~~~~~~~~~~~~~~~~~~~~~ 478 (498)
++.|.+.|+....+.+|+++.|.+.|...+..|. ..++.+.+..+++.++.+....
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y~ 455 (462)
T PRK15034 380 YRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVYG 455 (462)
T ss_pred hcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1568899999999999999999999999888774 3566677777777777666543
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.5e-30 Score=249.65 Aligned_cols=358 Identities=16% Similarity=0.182 Sum_probs=239.3
Q ss_pred ccccccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHH-HHHHHHHHHHHHHHHhHHHHHHhhccchhh
Q psy12242 42 FQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFA-VAVSIFCAGGIIGGAATGYVAERFGRKGGL 120 (498)
Q Consensus 42 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l 120 (498)
+.+.+|...++...+.+.+++..+ .++.+.....+ ...+...++..+++++.|+++||+|||+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l 68 (394)
T TIGR00883 3 AVEWFDFYLYGFAAVLVFHTFFPP--------------SGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTL 68 (394)
T ss_pred chhHHHHHHHHHHHHHHHHHhcCC--------------CCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHH
Confidence 445667777776667776664411 33444411111 122334455567899999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhccchhH--------HHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHHHHHHHHH
Q psy12242 121 LINNVFVVLAALLQGFSKAFSSYE--------MIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISI 192 (498)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~ 192 (498)
..+.++..++.++++++ ++++ .+++.|+++|++.+...+...+++.|++|+++|++..++...+..+|.
T Consensus 69 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~ 145 (394)
T TIGR00883 69 VITLLMMGIGTLLIGLL---PSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGL 145 (394)
T ss_pred HHHHHHHHHHHHHHhhC---CChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHH
Confidence 99999999999999998 6654 478899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCc------ccCCCCchhHHHHhhhHHHHHHHhhcccccCChhhHHHhcCCHHHHHHHHHhhcCCchhHHHHH
Q psy12242 193 VISQILGLGG------LLGTADGWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDEMD 266 (498)
Q Consensus 193 ~~~~~i~~~~------~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 266 (498)
++++.++... ...+..+||+.|++.++..++........||+|++. ++
T Consensus 146 ~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------------------------ 199 (394)
T TIGR00883 146 LLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFE--KA------------------------ 199 (394)
T ss_pred HHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHHHHhcCCChhHH--HH------------------------
Confidence 9998753210 011357899999988777666655555567765321 00
Q ss_pred HHHHhHHhhhcCCCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHH-hhcCCCchhHHHHHHHHHHHHHH
Q psy12242 267 EMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIF-TMAQLSDTAAQWATLGMGTMNVV 345 (498)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~ 345 (498)
+++++..+.+.++.+++++. ..+......+..... ......+.|.+. ++.|.++.+.+.......+...+
T Consensus 200 ------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 270 (394)
T TIGR00883 200 ------QEKHKKKRGPIRETLTKHRK--PFLLGLGLVIATTTT-FYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFI 270 (394)
T ss_pred ------HhccccccCCHHHHHHhchH--HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHH
Confidence 00011122345556665431 222333333322222 333444455555 67789999999988889999999
Q ss_pred HHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChh
Q psy12242 346 MTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSAR 425 (498)
Q Consensus 346 ~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 425 (498)
+.++.+++.||++||+.+.....+..+....+...... . ...+.. .......+.......+...++..|.+|++.|
T Consensus 271 ~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~ 346 (394)
T TIGR00883 271 TIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLD-S--GSFTLF-FFLVLGLALIGGMYTGPMGSFLPELFPTEVR 346 (394)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhc-C--CchHHH-HHHHHHHHHHHHHHhhhHHHHHHHhCCccce
Confidence 99999999999999987765544443332211111110 0 111111 1222222222223446667888999999999
Q ss_pred hHHHHHHH-HHHHHHHHHHHHhHHHHHHhhh
Q psy12242 426 PLATSLAV-SINWTANFIVGLGFLPIESIIH 455 (498)
Q Consensus 426 ~~~~g~~~-~~~~~~~~~~~~~~~~l~~~~g 455 (498)
+++.++.+ ....++..++|.+.|.+.+..+
T Consensus 347 ~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g 377 (394)
T TIGR00883 347 YTGASLAYNLAGAIFGGFAPYIAAALVAMTG 377 (394)
T ss_pred eeEeeehhHhHHHHHhhHHHHHHHHHHHHcC
Confidence 99999854 4456788899999999999888
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.9e-30 Score=245.83 Aligned_cols=357 Identities=15% Similarity=0.136 Sum_probs=239.4
Q ss_pred ccccccccccCCcHH-HHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhh
Q psy12242 42 FQHGYNTGVFNAPQK-LISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGL 120 (498)
Q Consensus 42 ~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l 120 (498)
+..++..+...+.+| +++++++ .++.+. |++.+++.+...+.+++.|+++||+||||.+
T Consensus 7 ~~~~~~~~~~~~~l~~~l~~~~g----------------~s~~~~----g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~ 66 (375)
T TIGR00899 7 FLTGIAGALQFPTLSLFLSEEVR----------------ARPAMI----GLFYTGSAIVGIAVSQLLATRSDYQGDRKGL 66 (375)
T ss_pred HHHHHHHHHHhhHHHHHHHcccC----------------CCHHHH----HHHHHHHHHHHHHHHHHHHHHHhccCCchHH
Confidence 344455555555554 3556666 777777 9999999999999999999999999998876
Q ss_pred H-HHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhh--HhHHHHHHHHHHHHHHH
Q psy12242 121 L-INNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAV--GTVYQLVITISIVISQI 197 (498)
Q Consensus 121 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~--~~~~~~~~~~g~~~~~~ 197 (498)
+ .+..+..++.++++++ ++++.+++.|++.|.+.+...|...++..|+.|+++|++. .+....+.++|.+++++
T Consensus 67 ~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~ 143 (375)
T TIGR00899 67 ILFCCLLAALACLLFAWN---RNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPP 143 (375)
T ss_pred HHHHHHHHHHHHHHHHhc---chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhh
Confidence 5 4566666777888888 8999999999999988888888888899999987777754 57788888999999998
Q ss_pred HhcCcccCCCCchhHHHHhhhHHHHHHHhh-cccccCChhhHHHhcCCHHHHHHHHHhhcCCchhHHHHHHHHHhHHhhh
Q psy12242 198 LGLGGLLGTADGWPLLLAFTLVPGIYQMIT-LPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDEMDEMRAEYESIK 276 (498)
Q Consensus 198 i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (498)
+ ++.+.+..+||+.|++.++..++..+. ++++||+|+.. ++++
T Consensus 144 ~--~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~------------------------------ 187 (375)
T TIGR00899 144 L--AFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYPRGA----PGAL------------------------------ 187 (375)
T ss_pred H--HHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcccCc----cccc------------------------------
Confidence 4 446667789999999988776655544 44578876321 0000
Q ss_pred cCCCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhc
Q psy12242 277 LIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEI 356 (498)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr 356 (498)
++.+.++.+++++++............ ......+.+.++.++.|.++.+.+..........+++.++.+++.||
T Consensus 188 --~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r 261 (375)
T TIGR00899 188 --TRLEVRGLLASRDTRLLFVACTLMWGC----NILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKR 261 (375)
T ss_pred --CcchhhhhhcCcchHHHHHHHHHHHHH----HHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 001122344444433222222211111 11122233344456779999988888777777788889999999999
Q ss_pred cCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHH
Q psy12242 357 SGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSIN 436 (498)
Q Consensus 357 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 436 (498)
++||+.+..+.....+....+... ...+.. .......+.......+....+..|..|++ ++++.++.+...
T Consensus 262 ~g~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~-~~~~~~~g~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 332 (375)
T TIGR00899 262 FGKRRLMLLAALAGVAFYTGLAAD-------NSLWAL-LMLQLLNAIFIGILAGIGMLYFQDLMPGR-AGAATTLYTNTG 332 (375)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHH-------HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCcch-hhHHHHHHHHHH
Confidence 999998876655444333322221 111111 11122222222223355666777887764 679999999999
Q ss_pred HHHHHHHHHhHHHHHHhhhhH-HHHHHHHHHHHHHHH
Q psy12242 437 WTANFIVGLGFLPIESIIHGY-VFTIFAVLQAMFVLF 472 (498)
Q Consensus 437 ~~~~~~~~~~~~~l~~~~g~~-~~~~~~~~~~~~~~~ 472 (498)
++|..++|.+.|.+.+..++. .+.+.+++.+++.++
T Consensus 333 ~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~ 369 (375)
T TIGR00899 333 RVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFC 369 (375)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Confidence 999999999999999988864 445555544444443
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-29 Score=245.70 Aligned_cols=355 Identities=11% Similarity=0.064 Sum_probs=244.6
Q ss_pred HHHHHHHhhhhhccccccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy12242 30 AFAISASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATGY 109 (498)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~ 109 (498)
+..+....+. .+..+++....+...|.++++++ +++.+. |++.+.+.+++.+++++.|+
T Consensus 25 ~~~~~~~~~~-~~~~~~~~~~~~~~~p~i~~~~~----------------~s~~~~----gl~~~~~~~g~~i~~~~~g~ 83 (438)
T PRK10133 25 IIPFALLCSL-FFLWAVANNLNDILLPQFQQAFT----------------LTNFQA----GLIQSAFYFGYFIIPIPAGI 83 (438)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhC----------------CCHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 3344444455 56677888888888899999998 888888 99999999999999999999
Q ss_pred HHHhhccchhhHHHHHHHHHHHHHH---hhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHHH
Q psy12242 110 VAERFGRKGGLLINNVFVVLAALLQ---GFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQL 186 (498)
Q Consensus 110 l~dr~Grr~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~ 186 (498)
+.||+|||+++..+.+++.++++++ .++ ++++.++++|+++|+|.|...+..++++.|+.|+++|.+.+++.+.
T Consensus 84 l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a---~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~ 160 (438)
T PRK10133 84 LMKKLSYKAGIITGLFLYALGAALFWPAAEI---MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQT 160 (438)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHH
Confidence 9999999999999999999999886 345 8999999999999999999999999999998887777778999999
Q ss_pred HHHHHHHHHHHHhcCcc--c-C------------C-C--------CchhHHHHhh-hHHHHHHHhh-cccccCChhhHHH
Q psy12242 187 VITISIVISQILGLGGL--L-G------------T-A--------DGWPLLLAFT-LVPGIYQMIT-LPFCPESPKYILL 240 (498)
Q Consensus 187 ~~~~g~~~~~~i~~~~~--~-~------------~-~--------~~wr~~f~~~-~~~~~~~~~~-~~~~~e~p~~l~~ 240 (498)
.+.+|..+++.++.... . . + . .+||++|+.. ++..++.++. ....||.|.
T Consensus 161 ~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~---- 236 (438)
T PRK10133 161 FNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS---- 236 (438)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc----
Confidence 99999999998642111 0 0 0 0 2566667543 2333232222 223444220
Q ss_pred hcCCHHHHHHHHHhhcCCchhHHHHHHHHHhHHhhhcCCCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHH
Q psy12242 241 SKGQELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTK 320 (498)
Q Consensus 241 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (498)
++++ ++++.....+.++++++|.++...+.. +.... .......+..++
T Consensus 237 ~~~~----------------------------~~~~~~~~~~~~~ll~~~~~~~~~l~~-~~~~~---~~~~~~~~~~~~ 284 (438)
T PRK10133 237 DNHS----------------------------DAKQGSFSASLSRLARIRHWRWAVLAQ-FCYVG---AQTACWSYLIRY 284 (438)
T ss_pred cccc----------------------------cccccchhhhHHHHHhCchHHHHHHHH-HHHHH---HHHHHHHHHHHH
Confidence 0000 000000112345677777655332222 12211 112223344445
Q ss_pred HHh-hcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q psy12242 321 IFT-MAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIM 399 (498)
Q Consensus 321 ~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (498)
+.+ ..|+++.+++.......++.++|++..+++.||+++|+++..+..+..+.+....+. .. . ... ..+.
T Consensus 285 l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~---~~--~---~~~-~~~~ 355 (438)
T PRK10133 285 AVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA---GG--H---VGL-IALT 355 (438)
T ss_pred HhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc---CC--h---HHH-HHHH
Confidence 444 579999999999999999999999999999999999998877766655444333221 11 1 111 1222
Q ss_pred HHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhh
Q psy12242 400 FVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIH 455 (498)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g 455 (498)
..+++.....|..++...|..|++ .+++.++.. ....++.++|.+.|.+.|..|
T Consensus 356 l~glg~~~i~P~~~s~a~~~~~~~-~~~as~l~~-~~~~g~~~~~~i~G~l~~~~g 409 (438)
T PRK10133 356 LCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAG 409 (438)
T ss_pred HHHHHHHHHHHHHHHHHHcccchh-hccchhHHh-HHhccchHHHHHHHHHHHhcc
Confidence 233344445588888888887754 577777775 455788999999999999876
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.3e-30 Score=252.17 Aligned_cols=371 Identities=14% Similarity=0.052 Sum_probs=246.1
Q ss_pred ccccccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh-----cc
Q psy12242 42 FQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERF-----GR 116 (498)
Q Consensus 42 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-----Gr 116 (498)
+..+......+..+|...++.+ .+.+++ |.+ +.....+ ++.+++|+++||+ ||
T Consensus 22 ~~~gl~~~~~~~~l~~~l~~~g----------------~~~~~i----g~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Gr 79 (491)
T PRK11010 22 FASGLPLALTSGTLQAWMTVEN----------------IDLKTI----GFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGR 79 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC----------------CCHHHH----HHH-HHHHHHH-HHHHHHHHHHHcccccCCCC
Confidence 4456666666666666555544 677776 665 3333443 6889999999999 99
Q ss_pred chh-hHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHHHHHHHHHHHH
Q psy12242 117 KGG-LLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVIS 195 (498)
Q Consensus 117 r~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~ 195 (498)
||. ++.+.++.+++..++++.+..++++.+.+.+++.|++.+...+...++..|++|+++|+++.++...+..+|.+++
T Consensus 80 rr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg 159 (491)
T PRK11010 80 RRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVS 159 (491)
T ss_pred chHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHH
Confidence 985 6677777777777777764345788999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCcccCC-CCchhHHHHhhhHHHHHHHhhcccccCChhhHHHhcCCHHHHHHHHHhhcCCchhHHHHHHHHHhHHh
Q psy12242 196 QILGLGGLLGT-ADGWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDEMDEMRAEYES 274 (498)
Q Consensus 196 ~~i~~~~~~~~-~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (498)
+.+. ..+.+ ..|||..|++.++..++..+..+++||+++. ++++++ .
T Consensus 160 ~~l~--~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~~~e~~~~----~~~~~~----------------------~---- 207 (491)
T PRK11010 160 GGLA--LWLADRYLGWQGMYWLMAALLIPCIIATLLAPEPTDT----IPVPKT----------------------L---- 207 (491)
T ss_pred HHHH--HHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCccc----cccccc----------------------h----
Confidence 8853 35555 4699999999887777666555567886421 000000 0
Q ss_pred hhcCCCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHHhhcCCCchhHHHHHH-HHHHHHHHHHHhhhhh
Q psy12242 275 IKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTMAQLSDTAAQWATL-GMGTMNVVMTLVSLVL 353 (498)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~g~l 353 (498)
++....++++.++++..+......+ ...........+..+++.++.|++..+.+.... ...++.++|.+++|++
T Consensus 208 -~~~~~~~l~~~~~~~~~~~~ll~~~----l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L 282 (491)
T PRK11010 208 -EQAVVAPLRDFFGRNNAWLILLLIV----LYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGIL 282 (491)
T ss_pred -hhhHHHHHHHHHcCcCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000113556666554443222221 111122223345556666778999999999874 5567999999999999
Q ss_pred hhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHH
Q psy12242 354 VEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAV 433 (498)
Q Consensus 354 ~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~ 433 (498)
.||+++|+.+..+..+.++..+.+.......+ ..+.......+.....+.+. +...++..+..+++.+++..|+.+
T Consensus 283 ~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~---~~~~l~~~~~l~~~~~g~~~-~~~~a~~~~l~~~~~~~t~~gl~~ 358 (491)
T PRK11010 283 MQRLSLFRALMIFGILQGVSNAGYWLLSITDK---NLYSMGAAVFFENLCGGMGT-AAFVALLMTLCNKSFSATQFALLS 358 (491)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhccc---cHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCCcHHHHHHHH
Confidence 99999988776655554444433322111111 11111111111111111111 334567778889999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhhHH-HHHHHHHHHHHHHHHHH
Q psy12242 434 SINWTANFIVGLGFLPIESIIHGYV-FTIFAVLQAMFVLFIYK 475 (498)
Q Consensus 434 ~~~~~~~~~~~~~~~~l~~~~g~~~-~~~~~~~~~~~~~~~~~ 475 (498)
....++..+++.+.|.+.|..|+.. +.+.+++++++.+..+.
T Consensus 359 s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~ 401 (491)
T PRK11010 359 ALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLV 401 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888754 44444455554444433
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.8e-30 Score=243.77 Aligned_cols=333 Identities=17% Similarity=0.211 Sum_probs=230.7
Q ss_pred ccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhhHHHHHHH
Q psy12242 48 TGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFV 127 (498)
Q Consensus 48 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~ 127 (498)
.....+..|.+.++++ .++.+. +++.+++.++..++++++|+++||+|||+.+..+.++.
T Consensus 7 ~~~~~p~~~~~~~~~~----------------~s~~~~----~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~ 66 (377)
T PRK11102 7 IDMYLPALPVIAADFG----------------VSAGSV----QMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVF 66 (377)
T ss_pred HHHHhccHHHHHHHhC----------------CCHHHH----HHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHH
Confidence 3445677888888888 888888 99999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHHHHHHHHHHHHHHHhcCcccCCC
Q psy12242 128 VLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLLGTA 207 (498)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 207 (498)
+++.+++.++ ++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++.++ +.+.+.
T Consensus 67 ~i~~~~~~~~---~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~l~~~ 141 (377)
T PRK11102 67 ALAAVACALA---QTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIG--GWLLVW 141 (377)
T ss_pred HHHHHHHHHH---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 9999999998 89999999999999999999999999999999999999999999999999999999853 466667
Q ss_pred CchhHHHHhhhHHHHHHHh-hcccccCChhhHHHhcCCHHHHHHHHHhhcCCchhHHHHHHHHHhHHhhhcCCCchhhhH
Q psy12242 208 DGWPLLLAFTLVPGIYQMI-TLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIPKVSLREM 286 (498)
Q Consensus 208 ~~wr~~f~~~~~~~~~~~~-~~~~~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (498)
.+||+.|++.++..++..+ ..+++||+++. +++++. + . ++ ...++++.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~------------~----~---~~--------~~~~~~~~ 190 (377)
T PRK11102 142 FSWHAIFWVLALAAILAAALVFFFIPETLPK----ERRQPF------------H----L---RT--------TIRNFASL 190 (377)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHhCCccCcc----cccCCC------------C----h---HH--------HHHHHHHH
Confidence 7999999988776665543 34556775321 000000 0 0 00 01133455
Q ss_pred hccccchhhHHHHHHHHHHHHhhchHHHHHh-HHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhh
Q psy12242 287 FTNAQLRIPLFISMTVMVAQQLSGINAVIYF-STKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLI 365 (498)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~ 365 (498)
++++..+...+ .... .+........+ ++++.+..|+++.+.+.......++.+++.++.+++.||+|||+.+..
T Consensus 191 ~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~ 265 (377)
T PRK11102 191 FRHKRVLGYML----ASGF-SFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRF 265 (377)
T ss_pred HcChHHHHHHH----HHHH-HHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 66654332111 1111 11122233333 334556679999999999999999999999999999999999998887
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHH-HHHHHHH
Q psy12242 366 GFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINW-TANFIVG 444 (498)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~-~~~~~~~ 444 (498)
+..+..+..+.+....... ...+...+....+..... ...+.......|..| +.++++.++.+.... ++..+++
T Consensus 266 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~ 340 (377)
T PRK11102 266 GLWIQFIMGIWLVVSALLD---LGFWALVVGVAAFVGCVS-MISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGA 340 (377)
T ss_pred HHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHH-HhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHH
Confidence 7765544433332221111 111111112222222221 222333445667766 778999998877654 4444444
Q ss_pred Hh
Q psy12242 445 LG 446 (498)
Q Consensus 445 ~~ 446 (498)
.+
T Consensus 341 ~~ 342 (377)
T PRK11102 341 LL 342 (377)
T ss_pred HH
Confidence 43
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=244.52 Aligned_cols=330 Identities=18% Similarity=0.178 Sum_probs=230.4
Q ss_pred ccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhhHHHHHHHHH
Q psy12242 50 VFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVL 129 (498)
Q Consensus 50 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~ 129 (498)
......|.+.++++ .++.+. ++..+.+.++..+++++.|+++||+|||+.++.+.++..+
T Consensus 21 ~~~~~lp~~~~~~~----------------~s~~~~----~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i 80 (392)
T PRK10473 21 MYLVGLPRIAADLN----------------ASEAQL----HIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFII 80 (392)
T ss_pred HHhhhHHHHHHHhC----------------CCHHHH----HHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHH
Confidence 34467888999888 788887 9999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHHHHHHHHHHHHHHHhcCcccCCCCc
Q psy12242 130 AALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLLGTADG 209 (498)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~ 209 (498)
+.+++..+ ++++.+++.|+++|++.+...+...+++.|++|+++|+++.++.+....+|..++|.++ +.+.+..+
T Consensus 81 ~~~~~~~~---~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~--~~l~~~~g 155 (392)
T PRK10473 81 ASLLCSLA---ETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLG--HLIMLKFP 155 (392)
T ss_pred HHHHHHHh---CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhCcC
Confidence 99999988 89999999999999999999999999999999999999999999999999999999854 35556779
Q ss_pred hhHHHHhhhHHHHHHHh-hcccccCChhhHHHhcCCHHHHHHHHHhhcCCchhHHHHHHHHHhHHhhhcCCCchhhhHhc
Q psy12242 210 WPLLLAFTLVPGIYQMI-TLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIPKVSLREMFT 288 (498)
Q Consensus 210 wr~~f~~~~~~~~~~~~-~~~~~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (498)
||+.|++.++..++..+ ...++||+++. +++++ ....+..++.++
T Consensus 156 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~----~~~~~------------------------------~~~~~~~~~~~~ 201 (392)
T PRK10473 156 WQSLFYTMAAMGILVLLLSLFILKETRPA----RAPAA------------------------------SSKPRENSESLL 201 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCCCc----ccCCc------------------------------cchHHHHHHHHh
Confidence 99999988766655443 34556776321 00000 000012234455
Q ss_pred cccchhhHHHHHHHHHHHHhhchHHHHHhHHH-HHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhh
Q psy12242 289 NAQLRIPLFISMTVMVAQQLSGINAVIYFSTK-IFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGF 367 (498)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~ 367 (498)
++.++...+........ ......+.|+ +.++.|+++.+.+......+++.+++.++.+++.||++||+.+..+.
T Consensus 202 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~ 276 (392)
T PRK10473 202 NRFFLSRLVITTLSVTV-----ILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQ 276 (392)
T ss_pred CHHHHHHHHHHHHHHHH-----HHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 55444332222211111 1122333344 44667999989898888999999999999999999999999988887
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhH
Q psy12242 368 MGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGF 447 (498)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~ 447 (498)
.+..++.+.+..... .. .......+...+...+. +. ....+..|.+.|+ |.......++..+++.+.
T Consensus 277 ~~~~~~~~~~~~~~~------~~-~~~~~~~l~~~g~~~~~-~~--~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~ 343 (392)
T PRK10473 277 VLFLAAGITLALSPS------HA-VSLFGITLICAGFSVGF-GV--AMSQALGPFSLRA---GVASSTLGIAQVCGSSLW 343 (392)
T ss_pred HHHHHHHHHHHHHHH------HH-HHHHHHHHHHHHHHHHh-HH--HHHHHhccCcccc---cHHHHHHHHHHHHHHHHH
Confidence 776666655554321 11 11111122222222221 11 2333444544443 444455567777788888
Q ss_pred HHHHHhhhh
Q psy12242 448 LPIESIIHG 456 (498)
Q Consensus 448 ~~l~~~~g~ 456 (498)
+.+.+..++
T Consensus 344 ~~l~~~~g~ 352 (392)
T PRK10473 344 IWLAAVLGI 352 (392)
T ss_pred HHHHHHhcc
Confidence 888877775
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=247.45 Aligned_cols=342 Identities=22% Similarity=0.325 Sum_probs=246.7
Q ss_pred ccccccccccCCcHH-HHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhh
Q psy12242 42 FQHGYNTGVFNAPQK-LISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGL 120 (498)
Q Consensus 42 ~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l 120 (498)
+...++.....+..| .+.++++ .++.+. +++.+++.++..+++++.|+++||+|||+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~----------------~s~~~~----~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l 65 (352)
T PF07690_consen 6 FLSGFGFSIISPALPLYLAEELG----------------LSPSQI----GLLFSAFFLGSALFSPFAGYLSDRFGRRRVL 65 (352)
T ss_dssp HHHHHHHHHHHHHHH-HHHCCST----------------TTSHCH----HHHHHHHHHHHHHHHHHHHHHHHHS-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccC----------------CCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHcCCeeeE
Confidence 444455555666666 6766666 688888 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHHHHHHHHHHHHHHHhc
Q psy12242 121 LINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGL 200 (498)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~ 200 (498)
..+.++.+++.++..++ ++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+.++|.++++.+
T Consensus 66 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l-- 140 (352)
T PF07690_consen 66 IIGLLLFALGSLLLAFA---SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLL-- 140 (352)
T ss_dssp HHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred eehhhhhhhHHHHhhhh---hhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccch--
Confidence 99999999997777776 7777999999999999999999999999999999999999999999999999999995
Q ss_pred CcccCCCCchhHHHHhhhHHHHHHHhh-cccccCChhhHHHhcCCHHHHHHHHHhhcCCchhHHHHHHHHHhHHhhhcCC
Q psy12242 201 GGLLGTADGWPLLLAFTLVPGIYQMIT-LPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIP 279 (498)
Q Consensus 201 ~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (498)
++.+.+..+||+.|++.++..++..++ ..+++++|+.. .+++++++. ++++++
T Consensus 141 ~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~-~~~~~~~~~-------------------------~~~~~~ 194 (352)
T PF07690_consen 141 GGFLISYFGWRWAFLISAILSLIAAILFILFLPEPPPPR-ERESPKESE-------------------------SKKPKP 194 (352)
T ss_dssp HHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---STTT-T--SSTTTT---------------------------HHHC
T ss_pred hhhhhhccccccccccccchhhhhhhhHhhhhhhccccc-ccccccccc-------------------------cccccc
Confidence 447778889999999988887777653 34444443211 000000000 001111
Q ss_pred Cc-hhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHH-HhhcCCC-chhHHHHHHHHHHHHHHHHHhhhhhhhc
Q psy12242 280 KV-SLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKI-FTMAQLS-DTAAQWATLGMGTMNVVMTLVSLVLVEI 356 (498)
Q Consensus 280 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~g~l~dr 356 (498)
.. .++.+.+++..| ..+........ .......+.|.+ .+.+|.+ ..+.+.......+..+++.++.+++.||
T Consensus 195 ~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 269 (352)
T PF07690_consen 195 LKPGFKSLFKNPVLW-ILLIAFFLFFF----VFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDR 269 (352)
T ss_dssp CCH-CTHHHHHHCCH-HHHHHHHHHHH----HHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccchhh-hhhhhhhHHHH----HHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 256666666554 22222222211 233455666665 6778999 7888888999999999999999999999
Q ss_pred cCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHH
Q psy12242 357 SGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSIN 436 (498)
Q Consensus 357 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 436 (498)
+++|+..........+..+.+....... ..........+ .+.......+....+..|..|++.++++.|+.+...
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 344 (352)
T PF07690_consen 270 FGRRRRLLIAILLLILGALGLLLLPFSS----SPVWLIIALFL-IGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIG 344 (352)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHCCSHHHC----HHHHHHHHHHH-HHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 9998877776666666655554433221 11122222222 222333345778889999999999999999999999
Q ss_pred HHHHHHHH
Q psy12242 437 WTANFIVG 444 (498)
Q Consensus 437 ~~~~~~~~ 444 (498)
+++..++|
T Consensus 345 ~~~~~igP 352 (352)
T PF07690_consen 345 SLGGIIGP 352 (352)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHCC
Confidence 99999887
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-29 Score=240.31 Aligned_cols=321 Identities=13% Similarity=0.018 Sum_probs=218.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhh
Q psy12242 80 IEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGL 159 (498)
Q Consensus 80 ~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 159 (498)
.++.+. +++.+.+.+++.+.++++|+++||+|||++++.+.++.+++++++.++ .+. ++.|+++|++.+.
T Consensus 35 ~s~~~~----~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~---~~~---~~~r~l~G~~~a~ 104 (393)
T PRK11195 35 YPDWSQ----PLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFG---IHP---LLAYGLVGIGAAA 104 (393)
T ss_pred CcHHHH----HHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHH---HHH---HHHHHHHHHHHHH
Confidence 566666 999999999999999999999999999999999999999999888776 554 7889999999999
Q ss_pred hhcchhhhhhccCcccchhhhHhHHHHHHHHHHHHHHHHhcCcccCCCCchhHHHHhhhHHHHHHHhhcccccCChhhHH
Q psy12242 160 NAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLLGTADGWPLLLAFTLVPGIYQMITLPFCPESPKYIL 239 (498)
Q Consensus 160 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~l~ 239 (498)
..|...+++.|++|+++|++++++......+|..+||.+ ++.+.+. .|+..+.+.+...++..+..+.+||+|+..
T Consensus 105 ~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~l--gG~l~~~-~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~- 180 (393)
T PRK11195 105 YSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVL--GGALADP-HAEAALAVCALIYLLAALFNLFIPRLGARR- 180 (393)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCcccc-
Confidence 999999999999999999999999999999999999995 4455543 377777766655555555556678875321
Q ss_pred HhcCCHHHHHHHHHhhcCCchhHHHHHHHHHhHHhhhcCCCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhH-
Q psy12242 240 LSKGQELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFS- 318 (498)
Q Consensus 240 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 318 (498)
++.+.++ .+ ..++.. ...+.+++++..+...+.....+.. .....+..
T Consensus 181 -~~~~~~~-~~-------------~~~~~~-----------~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 229 (393)
T PRK11195 181 -PGQSWNP-IA-------------LLRDFF-----------HACRVLWRDKLGRFSLAGTTLFWGA-----GATLRFLVL 229 (393)
T ss_pred -cccCCCH-HH-------------HHHHHH-----------HHHHHHHhCchhHHHHHHHHHHHHH-----HHHHHHHHH
Confidence 1000000 00 000000 1234566666544332222222211 11222223
Q ss_pred HHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q psy12242 319 TKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVI 398 (498)
Q Consensus 319 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (498)
++..+.+|.++.+.+......+++.+++.+..+++.||.++++.+..+. ..++....+... ...+.......
T Consensus 230 ~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~-------~~~~~~~~~~~ 301 (393)
T PRK11195 230 AWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQ-------HSLLPAYPLLI 301 (393)
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHH-------hHHHHHHHHHH
Confidence 3333557999999999999999999999999999999998887776654 333322222211 11122222222
Q ss_pred HHHHHHhcCccchhhhhhcccCCCCh-hhHHHHHHHHHHHHHHHHHHHhHHHHHHhhh
Q psy12242 399 MFVVFFAVGPGSIPWFLVSELFSQSA-RPLATSLAVSINWTANFIVGLGFLPIESIIH 455 (498)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g 455 (498)
+.+.+.+. ..+...+...+..|++. +|++.++.+...+++..++..+.+.+ +..+
T Consensus 302 ~~G~~~g~-~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~ 357 (393)
T PRK11195 302 LIGALGGF-FVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLG 357 (393)
T ss_pred HHHHhhhh-hhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcC
Confidence 22222222 22334455667655554 79999999999999999999998855 4555
|
|
| >KOG1330|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-31 Score=240.34 Aligned_cols=374 Identities=14% Similarity=0.130 Sum_probs=254.8
Q ss_pred hHHHHHHHHHhhhhhccccccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHh
Q psy12242 27 GKLAFAISASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAA 106 (498)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~ 106 (498)
.+.+..+.+.++. ..+...|...+..+.+.+++++| ++++.. |++.+.+.+.+.+++|+
T Consensus 29 ~~~~~~l~il~~v-nlmny~Dr~~iagv~~~v~~~fn----------------i~~s~~----Gll~~vf~v~~~i~sPl 87 (493)
T KOG1330|consen 29 KSPTLTLVILCLV-NLMNYADRYTIAGVLKEVQTYFN----------------ISDSEL----GLLQTVFIVVFMIASPL 87 (493)
T ss_pred ccchHHHHHHHHH-HHHHHhhhhhhhhhhHHHHHhcC----------------CCchhc----cchhHHHHHHHHHHHHH
Confidence 3445566677777 78899999999999999999999 888888 99999999999999999
Q ss_pred HHHHHHhhccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHHH
Q psy12242 107 TGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQL 186 (498)
Q Consensus 107 ~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~ 186 (498)
.|+++|||+||+++.+|..+|.++.++++++ ..||+++++|.+.|+|.+...|+++++++|.+|.++|++++++++.
T Consensus 88 ~gyLadryNR~~v~~vG~~iW~~Av~~~~fs---~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~ 164 (493)
T KOG1330|consen 88 FGYLADRYNRKRVIAVGIFIWTLAVFASGFS---NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYF 164 (493)
T ss_pred HHHHHhhcCcceEEeeHHHHHHHHHHHHHHH---HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhh
Confidence 9999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcccCCCCc-hhHHHHhhhHHHHHHHh-hcccccCChhhHHHhcCCHHHHHHHHHhhcCCchhHHH
Q psy12242 187 VITISIVISQILGLGGLLGTADG-WPLLLAFTLVPGIYQMI-TLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDE 264 (498)
Q Consensus 187 ~~~~g~~~~~~i~~~~~~~~~~~-wr~~f~~~~~~~~~~~~-~~~~~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~ 264 (498)
...+|..+|.+ .+..+....+ |||.|+..+++.++..+ ..++++|++| +.+ ++.+. .
T Consensus 165 ~ipvGsglG~v--vgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~r-----ga~-~~~~~-------~------ 223 (493)
T KOG1330|consen 165 AIPVGSGLGYV--VGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPER-----GAR-DEVDG-------E------ 223 (493)
T ss_pred hcccccceeEE--eeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCccc-----ccc-ccccc-------C------
Confidence 99999999988 5556665555 99999999888777664 4566777642 111 11000 0
Q ss_pred HHHHHHhHHhhhcCCCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHH
Q psy12242 265 MDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNV 344 (498)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 344 (498)
...........++.+.+.+++.+....+......+... +.......+.++..+-.|.+..+..++..+...++.
T Consensus 224 -----~~~~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~G-s~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~ 297 (493)
T KOG1330|consen 224 -----NKMVKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFVIG-SLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGS 297 (493)
T ss_pred -----CcCCCCccchHHHHHHHHccCceeeehHHHHHHHHhcc-ccchhhhhHHHHHHHHhCCccccchhhhhHHHhhch
Confidence 00000111122344455555554434333333333211 111122222333334456777777778888899999
Q ss_pred HHHHhhhhhhhccCC----ceehhhh----hHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhh
Q psy12242 345 VMTLVSLVLVEISGR----KTLLLIG----FMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLV 416 (498)
Q Consensus 345 ~~~~~~g~l~dr~g~----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (498)
+|.+.+|.++||+.| -...... ......+...+......... ..+..+++..+..........+. .-+.
T Consensus 298 lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~--s~~~~~il~~~g~~~~~~~~a~n-~~i~ 374 (493)
T KOG1330|consen 298 LGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSS--SMIFGLILFLVGETISWFNWATN-NPIF 374 (493)
T ss_pred hhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHHHhcccccc-ccee
Confidence 999999999999432 1122221 12222222222222222211 11222222222222222333333 3355
Q ss_pred cccCCCChhhHHHHHHHHHHHH-HHHHHHHhHHHHHHhh
Q psy12242 417 SELFSQSARPLATSLAVSINWT-ANFIVGLGFLPIESII 454 (498)
Q Consensus 417 ~~~~p~~~~~~~~g~~~~~~~~-~~~~~~~~~~~l~~~~ 454 (498)
.|++|++.|.+++++...+..+ |.+-+|.+.|.+.|..
T Consensus 375 l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l 413 (493)
T KOG1330|consen 375 LEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKL 413 (493)
T ss_pred eEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHh
Confidence 6999999999999998887764 4555566999998865
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.7e-29 Score=238.41 Aligned_cols=349 Identities=15% Similarity=0.060 Sum_probs=229.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhhHHHHHHHHHHHHHHhh-hhccchhHHHHHHHHHHHhhhh
Q psy12242 80 IEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGF-SKAFSSYEMIILGRFLIGINSG 158 (498)
Q Consensus 80 ~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~r~l~G~~~g 158 (498)
.++.+. |++.+.+.+++.+++++.|+++||+||||++..+..+.+++.+++.. ....++++.+++.|++.|++.+
T Consensus 45 ~s~~~~----g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~ 120 (402)
T TIGR00897 45 LSPQQS----ASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYP 120 (402)
T ss_pred CCHHHh----HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchH
Confidence 788888 99999999999999999999999999999999999999988776532 1111578888999999999998
Q ss_pred hhhcchhhhhhccCcccchhhhHhHHHHHHHHHH-HHHHHHhcCcccCCCCchhHHHHhhhHHHHHHH-hhcccccCChh
Q psy12242 159 LNAGLAPMYLAEISPVHLRGAVGTVYQLVITISI-VISQILGLGGLLGTADGWPLLLAFTLVPGIYQM-ITLPFCPESPK 236 (498)
Q Consensus 159 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~-~~~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~-~~~~~~~e~p~ 236 (498)
...+...+.+.+++|+++|++++++.+.+.++|. .+++++ ++.+.+..+|+..++.......+.. +..++.+|.++
T Consensus 121 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~--~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (402)
T TIGR00897 121 LFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYY--SSYAIPAFGEMNTLWSALAFVLTGGVIALFSNKDIFT 198 (402)
T ss_pred HHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcccccchHHHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 8888888889999999999999999999999997 578874 3455666786655554433222222 22233444321
Q ss_pred hHHHhcCCHHHHHHHHHhhcCCchhHHHHHHHHHhHHhhhcCCCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHHH
Q psy12242 237 YILLSKGQELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIY 316 (498)
Q Consensus 237 ~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (498)
. .++++++ +.+ +.+..+++++++|.++... ...++.. ........
T Consensus 199 ~--~~~~~~~-----------------~~~-----------~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~ 243 (402)
T TIGR00897 199 P--QHMQTRE-----------------KFS-----------ELGKAATILFTNPNVLLGG----MVRIINT-IGLFGFAV 243 (402)
T ss_pred c--ccccCCc-----------------chh-----------hHHHHHHHHHcChhHHHHH----HHHHHHH-HHHHHHHH
Confidence 0 0000000 000 0011344567776544222 2222222 22344556
Q ss_pred hHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehh-hhhHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q psy12242 317 FSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLL-IGFMGVFVVTVLLTIVMQFVEIFVMSIFCII 395 (498)
Q Consensus 317 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (498)
+.|.+.++.|++..+.+.......++..++.+..|+++||++||+... .+.....+....+........ ...+....
T Consensus 244 ~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~--~~~~~~~~ 321 (402)
T TIGR00897 244 FLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFG--HSFAVALI 321 (402)
T ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccC--CcHHHHHH
Confidence 677777889999999888888889999999999999999999888763 222333333222222111100 01111111
Q ss_pred HHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh-HHHHHHHHHHHHHHHHHH
Q psy12242 396 LVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIHG-YVFTIFAVLQAMFVLFIY 474 (498)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~-~~~~~~~~~~~~~~~~~~ 474 (498)
...+.. .......+. .....|.. +++|+++.|+.+....+++.++|.+.|.+.+..|+ ..+++.+++.+++.++..
T Consensus 322 ~~~~~G-~~~~~~~~~-~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~ 398 (402)
T TIGR00897 322 IAIALG-IFLAGYVPL-AAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTA 398 (402)
T ss_pred HHHHHH-HHHHHHHHH-HHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence 222222 222222233 33455664 46899999999999999999999999999998885 455666666555554433
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-29 Score=236.70 Aligned_cols=338 Identities=25% Similarity=0.330 Sum_probs=265.0
Q ss_pred hccccccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhh
Q psy12242 41 SFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGL 120 (498)
Q Consensus 41 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l 120 (498)
.+...++........|.+.++++ .++.+. +++.+.+.++..+++++.|+++||+|||+.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~----~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~ 67 (352)
T cd06174 8 FFLSGLDRGLLSPALPLLAEDLG----------------LSASQA----GLIVSAFSLGYALGSLLAGYLSDRFGRRRVL 67 (352)
T ss_pred HHHHHHhhhhhHhhHHHHHHHcC----------------CCHHHH----HHHHHHHHHHHHHHHHhHHHHHHHhCCchhh
Confidence 34555666666777777777766 677777 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHHHHHHHHHHHHHHHhc
Q psy12242 121 LINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGL 200 (498)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~ 200 (498)
..+..+..++.+...++ ++++.+++.|++.|++.+...+...+++.|++|+|+|++.+++......+|..+++.++
T Consensus 68 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~- 143 (352)
T cd06174 68 LLGLLLFALGSLLLAFA---SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLG- 143 (352)
T ss_pred HHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHH-
Confidence 99999999999999998 89999999999999999999999999999999999999999999999999999999954
Q ss_pred CcccCCCCchhHHHHhhhHHHHHHHhhcccccCChhhHHHhcCCHHHHHHHHHhhcCCchhHHHHHHHHHhHHhhhcCCC
Q psy12242 201 GGLLGTADGWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIPK 280 (498)
Q Consensus 201 ~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (498)
+.+.+..+||+.+++.++..++..+...+++
T Consensus 144 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------ 174 (352)
T cd06174 144 -GLLAESLGWRWLFLILAILGLLLALLLLFLL------------------------------------------------ 174 (352)
T ss_pred -HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH------------------------------------------------
Confidence 4666677899999998777666654443221
Q ss_pred chhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHHhh-cCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCC
Q psy12242 281 VSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTM-AQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGR 359 (498)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~ 359 (498)
| ..+......+... ........+.+.+.++ .|.+..+.+.......++..++.++.+++.||++|
T Consensus 175 ---------~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 240 (352)
T cd06174 175 ---------R----LLLLLALAFFLLS-FGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGR 240 (352)
T ss_pred ---------H----HHHHHHHHHHHHH-hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 1122222222222 2234445555555544 48999999999999999999999999999999999
Q ss_pred ce-ehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHH
Q psy12242 360 KT-LLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWT 438 (498)
Q Consensus 360 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~ 438 (498)
|+ .+..+..+..++.+.+.... ............+.......+....+..|..|+++|++.+|+.+....+
T Consensus 241 ~~~~~~~~~~~~~i~~~~~~~~~--------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (352)
T cd06174 241 RRLLLLIGLLLAALGLLLLALAP--------SLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSL 312 (352)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhc--------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHH
Confidence 99 88888777777776665431 1222233344444445555678888999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHhhhh-HHHHHHHHHHHHHHHHH
Q psy12242 439 ANFIVGLGFLPIESIIHG-YVFTIFAVLQAMFVLFI 473 (498)
Q Consensus 439 ~~~~~~~~~~~l~~~~g~-~~~~~~~~~~~~~~~~~ 473 (498)
+..+++.+.+.+.+..++ ..+.+.+++.+++.++.
T Consensus 313 ~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 313 GGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL 348 (352)
T ss_pred HHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHh
Confidence 999999999999987775 45555565555555443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >KOG2532|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=242.13 Aligned_cols=359 Identities=16% Similarity=0.197 Sum_probs=254.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhh
Q psy12242 80 IEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGL 159 (498)
Q Consensus 80 ~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 159 (498)
.+..+. |++.+.+++|+.+++++.|+++||+|.|+++..+.++.++++++...+.. .+++.+++.|+++|++.|.
T Consensus 70 ws~~~k----~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~-~~~~~~~~~R~lqGl~~g~ 144 (466)
T KOG2532|consen 70 WSSTEK----GLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAAS-IGFYLLLVLRFLQGLGQGV 144 (466)
T ss_pred CCHHHH----HHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH-hcchhhHHHHHHhHHHHhH
Confidence 466666 99999999999999999999999999999999999999999999988742 3455889999999999999
Q ss_pred hhcchhhhhhccCcccchhhhHhHHHHHHHHHHHHHHHHhcCcccCCC-CchhHHHHhhhHHHHHHHhhcc-cccCChhh
Q psy12242 160 NAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLLGTA-DGWPLLLAFTLVPGIYQMITLP-FCPESPKY 237 (498)
Q Consensus 160 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~-~~wr~~f~~~~~~~~~~~~~~~-~~~e~p~~ 237 (498)
.+|+...+.++|.|++||++..++...+..+|.+++.+ +++.+.+. .||+.+|++.+..+++..++++ +..|+|..
T Consensus 145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp--~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~ 222 (466)
T KOG2532|consen 145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMP--VSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK 222 (466)
T ss_pred HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 99999999999999999999999999999999999988 44566666 9999999999998888877664 46777732
Q ss_pred HHHhcCCHHHHHHHHHhhcCCchhHHHHHHHHHhHHhhhcC--CCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHH
Q psy12242 238 ILLSKGQELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLI--PKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVI 315 (498)
Q Consensus 238 l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (498)
++... ++|.+.+++...+++.+ .+.+++++++++.. +......++.....+....
T Consensus 223 ----h~~is---------------~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~v----wai~~~~f~~~~~~~~l~~ 279 (466)
T KOG2532|consen 223 ----HPNIS---------------EKELKYIEKGKSEAHVKKKPPVPYKAILTSPPV----WAIWISAFGGNWGFYLLLT 279 (466)
T ss_pred ----CCCCC---------------HHHHHHHHhcccccccCCCCCCCHHHHHcCHHH----HHHHHHHHHHHHHHHHHHH
Confidence 11111 11222223322222222 46789999999844 3444444444444444444
Q ss_pred HhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCc---------eehhhhhHHHHHHHHHHHHHHHHhhh
Q psy12242 316 YFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRK---------TLLLIGFMGVFVVTVLLTIVMQFVEI 386 (498)
Q Consensus 316 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (498)
+.+.|+.+.+|++..+.|+..++..+...+..+++|.++||+.+| ..-.++....++.++.+.+....
T Consensus 280 y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~--- 356 (466)
T KOG2532|consen 280 YLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDE--- 356 (466)
T ss_pred HhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCC---
Confidence 444455567899999999999999999999999999999998663 12234444444444444433211
Q ss_pred hhhHHHHHHHHHHHHHHHhcCccchhhhhhcccC-CCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHh---hhh-HHHHH
Q psy12242 387 FVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELF-SQSARPLATSLAVSINWTANFIVGLGFLPIESI---IHG-YVFTI 461 (498)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~---~g~-~~~~~ 461 (498)
..+..++++.+..+..+... ... +....- .+++.+..+|+.+....+.++++|.+.+.+... ..| ..|.+
T Consensus 357 --~~~~a~~~l~~~~~~~g~~~--~Gf-~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i 431 (466)
T KOG2532|consen 357 --HRLLAVILLTIAIGLSGFNI--SGF-YKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLI 431 (466)
T ss_pred --cchHHHHHHHHHHHHcccch--hhh-HhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHH
Confidence 11122222222222222211 111 222222 567889999999999999999999999999842 233 46777
Q ss_pred HHHHHHHHHHHHHHh
Q psy12242 462 FAVLQAMFVLFIYKK 476 (498)
Q Consensus 462 ~~~~~~~~~~~~~~~ 476 (498)
.+++.+++.++..++
T Consensus 432 ~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 432 AAGILIVGNIIFLFF 446 (466)
T ss_pred HHHHHHHhchheeEe
Confidence 777777766554443
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-28 Score=235.84 Aligned_cols=334 Identities=13% Similarity=0.049 Sum_probs=230.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhh
Q psy12242 80 IEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGL 159 (498)
Q Consensus 80 ~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 159 (498)
.+..+. |++.+...++..+.+++.|+++||+|||+++..+.++.+++.+++.++ ++++.+++.|+++|++.+.
T Consensus 43 ~s~~~~----gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~---~~~~~l~~~~~l~g~~~~~ 115 (400)
T PRK11646 43 WAAVMV----GIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIA---HEPWLLWLSCILSGLGGTL 115 (400)
T ss_pred CcHHHH----HHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHH
Confidence 677777 999999999999999999999999999999999999999999999988 8999999999999999998
Q ss_pred hhcchhhhhhccCcccchhhhHhHHHHHHHHHHHHHHHHhcCcccCCCCchhHHHHhhhHHHHHHHh-hcccccCChhhH
Q psy12242 160 NAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLLGTADGWPLLLAFTLVPGIYQMI-TLPFCPESPKYI 238 (498)
Q Consensus 160 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~e~p~~l 238 (498)
..+...+++.|++|+++|++++++.....++|..+||.++ +.+. ..+||+.|++.++..++..+ ..++.||.+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~--g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~--- 189 (400)
T PRK11646 116 FDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLG--SWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAYK--- 189 (400)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCccc---
Confidence 8899999999999999999999999999999999999954 3555 57999999988766555443 233445431
Q ss_pred HHhcCCHHHHHHHHHhhcCCchhHHHHHHHHHhHHhhhcCCCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhH
Q psy12242 239 LLSKGQELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFS 318 (498)
Q Consensus 239 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (498)
.++.. ++.+.++++.++++.++...+....... .......+.
T Consensus 190 --~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 231 (400)
T PRK11646 190 --LSTVR-------------------------------TPVREGMTRVLRDKRFVTYVLTLTGYYM-----LAVQVMLML 231 (400)
T ss_pred --ccccc-------------------------------hhhHHHHHHHHcCchHHHHHHHHHHHHH-----HHHHHHHhh
Confidence 00000 0001134556666654322111111111 112233456
Q ss_pred HHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhh-ccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy12242 319 TKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVE-ISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILV 397 (498)
Q Consensus 319 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (498)
|.+.++.+.++.+.+.......+....+....+++.| |++.++.+..+..+.+++...+.... .........
T Consensus 232 p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~ 304 (400)
T PRK11646 232 PIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVS-------NLQQLFTLI 304 (400)
T ss_pred hhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhh-------hHHHHHHHH
Confidence 6766666667788888877777766655555555554 56655555566555555554443321 111111111
Q ss_pred HHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhh-----hHHHHHHHHHHHHHHHH
Q psy12242 398 IMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIH-----GYVFTIFAVLQAMFVLF 472 (498)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g-----~~~~~~~~~~~~~~~~~ 472 (498)
.++. .......|...++..|..|++.||+++|+.+....++..++|.+.|.+.|..+ ...+...+++++++.+.
T Consensus 305 ~l~~-~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (400)
T PRK11646 305 CLFY-IGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLA 383 (400)
T ss_pred HHHH-HHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence 1111 22222335566788899999999999999999999999999999999999864 13344444444444433
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-29 Score=226.79 Aligned_cols=365 Identities=14% Similarity=0.206 Sum_probs=266.1
Q ss_pred cccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhhHHHHHHHH
Q psy12242 49 GVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVV 128 (498)
Q Consensus 49 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~ 128 (498)
.+.++..+.++++++ +|++|. +++.++..+...+..++.|.+.||+|.|++..++.++..
T Consensus 31 ~l~s~l~~~i~~~~~----------------LS~~q~----~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~ 90 (417)
T COG2223 31 TLFSPLGVFIKSDFG----------------LSEGQK----GLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLL 90 (417)
T ss_pred HHHHHHHhhhccccC----------------CCHHHH----HHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHH
Confidence 345566688888888 899999 999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHHHHHHHHHHHHHHHhcCcccCCCC
Q psy12242 129 LAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLLGTAD 208 (498)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~ 208 (498)
+-++..+++...++++++++++.+.|++.+ .+.....++++|+||+++|.++|+.. ..|+|..+..+++. .+....
T Consensus 91 IP~~~~~~a~~~~~~~~ll~~gll~G~~Ga-sFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P--~v~~~~ 166 (417)
T COG2223 91 IPCLGLAFAVTYPSTWQLLVIGLLLGLAGA-SFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAP--LVAVAF 166 (417)
T ss_pred HHHHHHHHHccCCchHHHHHHHHHHhcccc-eehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHH--HHHHHH
Confidence 999999999766777899999999999955 78888999999999999999999998 77888777766432 444445
Q ss_pred c---hhHHHHhhhHHHHHHH-hhcccccCChhhHHHhcCCHHHHHHHHHhhcCCchhHHHHHHHHHhHHhhhcCCCchhh
Q psy12242 209 G---WPLLLAFTLVPGIYQM-ITLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIPKVSLR 284 (498)
Q Consensus 209 ~---wr~~f~~~~~~~~~~~-~~~~~~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (498)
+ ||.+..+..+..++.. +.++...|.|... .+. ++..+..++
T Consensus 167 g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r---~~~-------------------------------~~~~~~~~~ 212 (417)
T COG2223 167 GFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHR---ASV-------------------------------KPQLPAQLK 212 (417)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhh---ccc-------------------------------cccchhHHH
Confidence 6 9999988877766644 4455566665321 000 000113456
Q ss_pred hHhccccchhhHHHHHHHHHHHHhhchHHH-HHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceeh
Q psy12242 285 EMFTNAQLRIPLFISMTVMVAQQLSGINAV-IYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLL 363 (498)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~ 363 (498)
.++++++.|...+ .++ .++.++..+ .+++.++.+++|.++.+++.......+.+.+.++.+|+++||+|.++.+
T Consensus 213 ~v~~~~~~W~lsl----lY~-~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~ 287 (417)
T COG2223 213 AVFSNKDTWLLSL----LYF-ATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVT 287 (417)
T ss_pred HHhcCcchHHHHH----HHH-HHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHH
Confidence 6777776553322 222 222233344 4444555578899999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHH
Q psy12242 364 LIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIV 443 (498)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~ 443 (498)
...+..++++...+.........................+.+.+ +...+-++...+|+ +.|.+.|+....+.+|++.-
T Consensus 288 ~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~G-nGsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf~l 365 (417)
T COG2223 288 LAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLG-NGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFL 365 (417)
T ss_pred HHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccC-cchheeechHHHHh-hhhHHHHHHHHhccccccch
Confidence 98888888888777664322211111222222222222222222 23444555566654 57899999999999999999
Q ss_pred HHhHHHHHHhhhh--HHHHHHHHHHHHHHHHHHHhcc
Q psy12242 444 GLGFLPIESIIHG--YVFTIFAVLQAMFVLFIYKKVP 478 (498)
Q Consensus 444 ~~~~~~l~~~~g~--~~~~~~~~~~~~~~~~~~~~~~ 478 (498)
|...+...+..|. ..++++..+.+++.++.+....
T Consensus 366 p~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~ 402 (417)
T COG2223 366 PLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALYA 402 (417)
T ss_pred hHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999884 4666677777777666555443
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-28 Score=233.15 Aligned_cols=338 Identities=14% Similarity=0.121 Sum_probs=234.7
Q ss_pred ccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhhHHHHH
Q psy12242 46 YNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNV 125 (498)
Q Consensus 46 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~ 125 (498)
+......+.+|.+.++++ .++.+. +++.+.+.+++.++++++|+++||+|||+.+..+..
T Consensus 22 ~~~~~~~p~~~~i~~~~~----------------~s~~~~----~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~ 81 (394)
T PRK11652 22 MAQTIYVPAIADMARDLN----------------VREGAV----QAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMS 81 (394)
T ss_pred HHHHHHhccHHHHHHHhC----------------CCHHHH----HHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHH
Confidence 455556677888999888 888888 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHHHHHHHHHHHHHHHhcCcccC
Q psy12242 126 FVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLLG 205 (498)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~ 205 (498)
+..++.+++.++ ++++.+++.|++.|++.+...+....+..|.+++++|+++.+....+..+|..++|.++ +.+.
T Consensus 82 ~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~--~~l~ 156 (394)
T PRK11652 82 IFILGTLVALFA---HSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIG--GLLT 156 (394)
T ss_pred HHHHHHHHHHHH---ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 999999999988 89999999999999999888888888999999999999999999999999999999853 4666
Q ss_pred CCCchhHHHHhhhHHHHHHH-hhcccccCChhhHHHhcCCHHHHHHHHHhhcCCchhHHHHHHHHHhHHhhhcCCCchhh
Q psy12242 206 TADGWPLLLAFTLVPGIYQM-ITLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIPKVSLR 284 (498)
Q Consensus 206 ~~~~wr~~f~~~~~~~~~~~-~~~~~~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (498)
+..+||+.|++.++..++.. +..++.||+++. ++++++ .+..++
T Consensus 157 ~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-------------------------------~~~~~~ 201 (394)
T PRK11652 157 TLFGWRACYLFLLLLGAGVTFSMARWMPETRPA----DARRTR-------------------------------VLASYR 201 (394)
T ss_pred hccChHHHHHHHHHHHHHHHHHHHHhCCccCcc----ccchhH-------------------------------HHHHHH
Confidence 77899999998776655443 334557776421 000000 012344
Q ss_pred hHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHH-hhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceeh
Q psy12242 285 EMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIF-TMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLL 363 (498)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~ 363 (498)
+.++++.++.......... ........+.+.+. +..|.++.+.++......++.+++..+.+++.||.+++...
T Consensus 202 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~ 276 (394)
T PRK11652 202 TLLSNRRFNCYLLMLIGTL-----AGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQ 276 (394)
T ss_pred HHHcChHHHHHHHHHHHHH-----HHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666665443222211111 11223333334444 44799999988888888888889999999999998843222
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHH
Q psy12242 364 LIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIV 443 (498)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~ 443 (498)
......+..+.+........ ...+..... ....+.......+....+..|..| +.++++.++.+....+|..++
T Consensus 277 --~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~ 350 (394)
T PRK11652 277 --SVICCLLAGLLMWIPGWFGV--MNVWTLLVP-AALFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLA 350 (394)
T ss_pred --HHHHHHHHHHHHHHHHHhcc--ccHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHH
Confidence 22222222222111111000 111112222 222222222344666777778877 568999999999999999999
Q ss_pred HHhHHHHHHhh
Q psy12242 444 GLGFLPIESII 454 (498)
Q Consensus 444 ~~~~~~l~~~~ 454 (498)
+.+.+.+.+..
T Consensus 351 ~~~~~~~~~~~ 361 (394)
T PRK11652 351 ALLSAMLPQTG 361 (394)
T ss_pred HHHHHHccCCc
Confidence 99888876543
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-28 Score=232.56 Aligned_cols=349 Identities=13% Similarity=0.068 Sum_probs=242.2
Q ss_pred HHHhhhhhccccccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q psy12242 34 SASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAER 113 (498)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr 113 (498)
..++.. .+..|+..+..++..|.++++++ .++.+. |++.+.+.+++.+++++.|++.||
T Consensus 6 ~~~~~~-f~~~G~~~~~~~~l~~~~~~~~~----------------~s~~~~----g~l~s~~~~g~~i~~~~~g~l~~r 64 (410)
T TIGR00885 6 ALITSL-FALWGFANDITNPMVPQFQQAFT----------------LTAFQA----ALVQSAFYGGYFIMAIPAAIFMKK 64 (410)
T ss_pred HHHHHH-HHHHHHHHHhHHHHHHHHHHHhC----------------CCHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455 57778888888889999999998 888888 999999999999999999999999
Q ss_pred hccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHHHHHHHHHH
Q psy12242 114 FGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIV 193 (498)
Q Consensus 114 ~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ 193 (498)
+|||+++..+.++++++.+++..++..++++.+++.|++.|+|.|...+....++.+..|+++|++.+++.+...++|..
T Consensus 65 ~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~ 144 (410)
T TIGR00885 65 LSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSI 144 (410)
T ss_pred hCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988765433368999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcccC------------------------CCCchhHHHHhhhHHHHHHHhhccc--ccCChhhHHHhcCCHHH
Q psy12242 194 ISQILGLGGLLG------------------------TADGWPLLLAFTLVPGIYQMITLPF--CPESPKYILLSKGQELE 247 (498)
Q Consensus 194 ~~~~i~~~~~~~------------------------~~~~wr~~f~~~~~~~~~~~~~~~~--~~e~p~~l~~~~~~~~~ 247 (498)
+++.++...... +..+||++|++.+++.++..+...+ .||.+ ++++
T Consensus 145 ~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~------~~~~-- 216 (410)
T TIGR00885 145 IGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALN------HSDA-- 216 (410)
T ss_pred HHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC------cccc--
Confidence 999864311111 1236999998877766554433322 33321 0000
Q ss_pred HHHHHHhhcCCchhHHHHHHHHHhHHhhhcCCCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHHhhc--
Q psy12242 248 AQRALSWLRGTIEVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTMA-- 325 (498)
Q Consensus 248 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 325 (498)
++.....+.++++|+|.++.. .+..+.+...+ .....+..++ .++.
T Consensus 217 ---------------------------~~~~~~~~~~~~~~~~~~~~~-~l~~f~yvg~e---~~~~s~l~~y-~~~~~~ 264 (410)
T TIGR00885 217 ---------------------------KQISFSASLSRLARIRHYREG-VIAQFFYVGVQ---IMCWTFIIQY-AVRLIP 264 (410)
T ss_pred ---------------------------ccccchhhHHHHHhChhHHHH-HHHHHHHHHHH---HHHHHHHHHH-HhhccC
Confidence 000011133456666655432 22222222222 2233334444 3433
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHh
Q psy12242 326 QLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFA 405 (498)
Q Consensus 326 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (498)
+.+...++...........+|+++++++.||+++|+.+.+...+..+..++..... .......+.+.. ++.
T Consensus 265 ~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~--------~~~~~~~l~~~g-lf~ 335 (410)
T TIGR00885 265 GMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAG--------GHVGLYCLTLCS-AFM 335 (410)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcC--------ChHHHHHHHHHH-HHH
Confidence 34444445555566678899999999999999999988777666666555554321 111222222333 333
Q ss_pred cCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q psy12242 406 VGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESII 454 (498)
Q Consensus 406 ~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~ 454 (498)
....|..++...+..+++.+..+.++.... +|+.+.|.+.|.+.|..
T Consensus 336 s~~fp~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~~ 382 (410)
T TIGR00885 336 SLMFPTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIIDMK 382 (410)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHHHh
Confidence 344488888888888877655455555544 89999999999999954
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-28 Score=229.45 Aligned_cols=331 Identities=12% Similarity=0.115 Sum_probs=232.3
Q ss_pred cccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhhHHHHHHHH
Q psy12242 49 GVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVV 128 (498)
Q Consensus 49 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~ 128 (498)
...++.+|.+.++++ .++.+. |++.+++.+++.+++++.|+++||+|||+++.++.++..
T Consensus 17 ~~~~~~lp~l~~~~~----------------~s~~~~----g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 76 (355)
T TIGR00896 17 TSVGPLLPQIRSALG----------------MSFSVA----GLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIA 76 (355)
T ss_pred ccCcccHHHHHHHhC----------------CCHHHH----HHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHH
Confidence 345778899999998 888888 999999999999999999999999999999999999988
Q ss_pred HHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHHHHHHHHHHHHHHHhcCcccCCCC
Q psy12242 129 LAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLLGTAD 208 (498)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~ 208 (498)
++.+.+ .+ ++++.+++.|++.|++.+...+....++.|++| ++|++++++...+.++|..+++.+.. .+.+..
T Consensus 77 ~~~~~~-~~---~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~--~l~~~~ 149 (355)
T TIGR00896 77 AGILIR-SA---PGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATV--PLAQHS 149 (355)
T ss_pred HHHHHH-Hh---ccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHH--HHHHhh
Confidence 888777 66 889999999999999999988888889999987 68999999999999999999987532 333332
Q ss_pred --chhHHHHhhhHHHHHHHhhcccccCChhhHHHhcCCHHHHHHHHHhhcCCchhHHHHHHHHHhHHhhhcCCCchhhhH
Q psy12242 209 --GWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIPKVSLREM 286 (498)
Q Consensus 209 --~wr~~f~~~~~~~~~~~~~~~~~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (498)
+||+.|.+.++..++... .++||.++ +++ ++++.++...++.
T Consensus 150 ~~~w~~~f~~~~~~~~~~~~--~~~~~~~~-----~~~-----------------------------~~~~~~~~~~~~~ 193 (355)
T TIGR00896 150 GGHWQQALAWWALPALLALL--AWIPQVRR-----RVA-----------------------------ANQTTTRLTPVRI 193 (355)
T ss_pred hhhHHHHHHHHHHHHHHHHH--HHhhhhcc-----ccC-----------------------------CCCCCCCCCCchh
Confidence 499998776654443322 22343310 000 0000011234456
Q ss_pred hccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccC-Cceehhh
Q psy12242 287 FTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISG-RKTLLLI 365 (498)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g-~~~~~~~ 365 (498)
+|++..+...+. ... ....+.....+.|.+.++.|.+..+.+...+...++.+++++..+++.||++ ||+.+..
T Consensus 194 ~~~~~~~~~~~~----~~~-~~~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~ 268 (355)
T TIGR00896 194 WRSPLAWQVTVF----FGL-QSGLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAV 268 (355)
T ss_pred hcCHhHHHHHHH----HHH-HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHH
Confidence 666644322111 111 1112334455667777778999999999999999999999999999999995 5555556
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccC-CCChhhHHHHHHHHHHHHHHHHHH
Q psy12242 366 GFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELF-SQSARPLATSLAVSINWTANFIVG 444 (498)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~g~~~~~~~~~~~~~~ 444 (498)
+..+.+++.+.+.+... ..... ...+ .+.......+.......+.. +++.+++..++.+.+.+++..++|
T Consensus 269 ~~~~~~~~~~~~~~~~~------~~~~~--~~~l-~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp 339 (355)
T TIGR00896 269 LAVLQLVGLCGLLFAPM------HGLWA--WALV-LGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGP 339 (355)
T ss_pred HHHHHHHHHHHHHHhhh------hHHHH--HHHH-HHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65555555554443211 11111 1112 22222233344444444443 456678999999999999999999
Q ss_pred HhHHHHHHhhhh
Q psy12242 445 LGFLPIESIIHG 456 (498)
Q Consensus 445 ~~~~~l~~~~g~ 456 (498)
.+.|.+.|..+.
T Consensus 340 ~~~G~l~~~~g~ 351 (355)
T TIGR00896 340 LFVGVLHDISGN 351 (355)
T ss_pred HHHHHHHHHhcc
Confidence 999999998874
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-28 Score=232.90 Aligned_cols=324 Identities=10% Similarity=0.075 Sum_probs=226.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhh
Q psy12242 80 IEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGL 159 (498)
Q Consensus 80 ~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 159 (498)
.++.+. |++.+.+.+++.+++++.|+++||+|||++++++.++.+++.++.+++ ++++.++++|++.|.+.+.
T Consensus 40 ~s~~~~----g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~ 112 (395)
T PRK10054 40 LSVDLI----GYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLV---NNVTLVVLFFALINCAYSV 112 (395)
T ss_pred CCHHHH----HHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHH
Confidence 788888 999999999999999999999999999999999999999999999888 8999999999999988888
Q ss_pred hhcchhhhhhccCcccchhhhHhHHHHHHHHHHHHHHHHhcCcccCCCCchhHHHHhhhHHHHHHHhhc-ccccCChhhH
Q psy12242 160 NAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLLGTADGWPLLLAFTLVPGIYQMITL-PFCPESPKYI 238 (498)
Q Consensus 160 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~p~~l 238 (498)
..+...++..|..|+++|++++++.....++|.+++|+++ +.+.. .+|+..|++.++..++.++.. +++||+++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~--~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~-- 187 (395)
T PRK10054 113 FSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLG--TLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRSEK-- 187 (395)
T ss_pred HHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhcccc--
Confidence 8888999999999999999999999999999999999854 34443 689999998877766654433 33555421
Q ss_pred HHhcCCHHHHHHHHHhhcCCchhHHHHHHHHHhHHhhhcCCCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhH
Q psy12242 239 LLSKGQELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFS 318 (498)
Q Consensus 239 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (498)
+ +++++ + +..+.++.+|++.++...+..++...... ....+..
T Consensus 188 --~-~~~~~----------------------~--------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~ 230 (395)
T PRK10054 188 --A-IATET----------------------G--------SVWSPSVLLQDKALLWFTCSGFLASFVSG----AFASCIS 230 (395)
T ss_pred --c-cccch----------------------h--------hhhhhhhhccCceehHHHHHHHHHHHHHH----HhhhhHH
Confidence 0 00000 0 00112456677765543333222222211 1111222
Q ss_pred HHHH--hhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q psy12242 319 TKIF--TMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIIL 396 (498)
Q Consensus 319 ~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (498)
.+.. ++.+.+....+.......+.........+++.||.++|+.+..+..+..++...+.... + ..+...+.
T Consensus 231 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~---~~~~~~~~ 304 (395)
T PRK10054 231 QYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSG---N---SLLLWGMS 304 (395)
T ss_pred HHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcc---h---HHHHHHHH
Confidence 2222 33455566667777777777777778889999999999988877766666655544321 0 11111112
Q ss_pred HHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhHHHH
Q psy12242 397 VIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIHGYVFT 460 (498)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~ 460 (498)
....+.......|.....+.+..|++.+++..+..+ ..++|..++|.+.|.+.|..+...++
T Consensus 305 -~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~ 366 (395)
T PRK10054 305 -AAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLF 366 (395)
T ss_pred -HHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHH
Confidence 222222222334566677888899999999988755 66789999999999999999864433
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-28 Score=230.92 Aligned_cols=355 Identities=12% Similarity=-0.018 Sum_probs=244.4
Q ss_pred ccccccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhh-
Q psy12242 42 FQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGL- 120 (498)
Q Consensus 42 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l- 120 (498)
+......++..+.+|.+.++++ .+..++ |++.+++.+...++++++|+++||+|||+..
T Consensus 14 ~~~~~~~~~~~p~l~~~l~~~g----------------~s~~~i----g~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~ 73 (382)
T TIGR00902 14 FGYFCAYGIFLPFFPAWLKGIG----------------LGEEMI----GLLIGAALIARFAGGLFFAPLIKDANHIIIAL 73 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC----------------CCHHHH----HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 3333444555566677777766 788888 9999999999999999999999999985433
Q ss_pred ---HHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHHHHHHHHHHHHHH
Q psy12242 121 ---LINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQI 197 (498)
Q Consensus 121 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 197 (498)
..+..+..+ ..+..+ ++++.+++.|+++|.+.+...|...++..|+ +++|+++.+....+.++|.+++|+
T Consensus 74 ~~~~~~~~l~~~--~~~~~~---~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~ 146 (382)
T TIGR00902 74 RLLALASAIFAA--AFSAGA---HNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSA 146 (382)
T ss_pred HHHHHHHHHHHH--HHHHhh---hhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHH
Confidence 222222222 233455 8899999999999999988889988887665 478899999999999999999999
Q ss_pred HhcCcccCCCCchhHHHHhhhHHHHHHHhhcccccCChhhHHHhcCCHHHHHHHHHhhcCCchhHHHHHHHHHhHHhhhc
Q psy12242 198 LGLGGLLGTADGWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDEMDEMRAEYESIKL 277 (498)
Q Consensus 198 i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (498)
.++.+.+..|||..|++..+..++.++.....|+.|+. ++++ +++.
T Consensus 147 --l~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~-----~~~~---------------------------~~~~ 192 (382)
T TIGR00902 147 --LFGGLIGMFDEQNILAILTAGLAFMLIGFLIKPTIPPK-----DAIP---------------------------EDES 192 (382)
T ss_pred --HHHHHHHHcChhHHHHHHHHHHHHHHHHHHcCCCCCCC-----cccc---------------------------cccc
Confidence 44577788899999988655433333333223322110 0000 0000
Q ss_pred CCCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhcc
Q psy12242 278 IPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEIS 357 (498)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~ 357 (498)
++..+.++++|+|+++...+...+.. .. ......+.+.+.++.|.++.+.+.......+..+++.+..+++.||+
T Consensus 193 ~~~~~~~~~l~~~~~~~~l~~~~l~~----~~-~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~ 267 (382)
T TIGR00902 193 QGDSAFIALLKNPMNLRFLAAVCLIQ----GA-HAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNC 267 (382)
T ss_pred ccchhHHHHHcChHHHHHHHHHHHHH----HH-HHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhC
Confidence 11224567788876553322222222 22 23333344555577899999999999989999999999999999999
Q ss_pred CCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHH-HH
Q psy12242 358 GRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVS-IN 436 (498)
Q Consensus 358 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~-~~ 436 (498)
++|+.+.++.....+....+.... ..+.....-.+....++ ...+....++.+. |+++++++.++.+. ..
T Consensus 268 g~~~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~q~l~g~~~~-~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~ 338 (382)
T TIGR00902 268 SARDLLLISAIACVGRWAIIGAIE-------AFPLIFLLQILHCGTFA-VCHLAAMRYIAAQ-PGSEIAKLQALYNALAM 338 (382)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhHh-------hHHHHHHHHHHHHHHHH-HHHHHHHHHHHhC-CHhhHHHHHHHHHHHHH
Confidence 999999888888888777665421 11222222222222222 2335566677777 99999999999874 55
Q ss_pred HHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHH
Q psy12242 437 WTANFIVGLGFLPIESIIHGYVFTIFAVLQAMFVL 471 (498)
Q Consensus 437 ~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~ 471 (498)
.+|..+++.+.|.+.|..+...++..+++.+++.+
T Consensus 339 g~g~~~g~~~~G~l~~~~g~~~~~~~~~~~~~~~~ 373 (382)
T TIGR00902 339 GGLIAIFTAFAGFIYPTLGAGTFVFMAIIAAAAFF 373 (382)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 68999999999999999987777777776665543
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-27 Score=227.24 Aligned_cols=338 Identities=14% Similarity=0.110 Sum_probs=209.4
Q ss_pred cchhhHHHHHHHHHHHHHH-HHHHHHHhHHHHHHhhccchhh-HHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhh
Q psy12242 80 IEQSQVTMIFAVAVSIFCA-GGIIGGAATGYVAERFGRKGGL-LINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINS 157 (498)
Q Consensus 80 ~~~~~~~~~~g~~~s~~~~-~~~~~~~~~g~l~dr~Grr~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~ 157 (498)
.++++. |++.+...+ ++.++.+++|+ +||+||||.+ ..+.++..++..+.+++ ++++.+++.+.+.|...
T Consensus 48 ~s~~~~----g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~ 119 (393)
T PRK15011 48 ARPAMV----GFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWN---RNYFVLLFVGVFLSSFG 119 (393)
T ss_pred CCHHHH----HHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHH
Confidence 788887 998776555 66666655565 9999999875 55566666777777888 88888776665555445
Q ss_pred hhhhcchhhhhhccCcccch--hhhHhHHHHHHHHHHHHHHHHhcCcccCCCCchhHHHHhhhHHHHHHHh-hcccccCC
Q psy12242 158 GLNAGLAPMYLAEISPVHLR--GAVGTVYQLVITISIVISQILGLGGLLGTADGWPLLLAFTLVPGIYQMI-TLPFCPES 234 (498)
Q Consensus 158 g~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~e~ 234 (498)
+...|...+++.|+.++++| +...++.+.+.++|.+++|++ ++.+.++.|||..|++.++..++..+ ...++||.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i--~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~ 197 (393)
T PRK15011 120 STANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPL--AYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSM 197 (393)
T ss_pred HhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHH--HHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 56788888888888876655 345578888999999999995 44777778999999988776655544 34557776
Q ss_pred hhhHHHhcCCHHHHHHHHHhhcCCchhHHHHHHHHHhHHhhhcCCCchhhhHhccccchhhHHHHHHHHHHHHhhchHHH
Q psy12242 235 PKYILLSKGQELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAV 314 (498)
Q Consensus 235 p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (498)
|+. +++.+ + +... ..++++.....+....... ......
T Consensus 198 ~~~----~~~~~-----------------------------~--~~~~---~~~~~~~~~~~~~~~~~~~----~~~~~~ 235 (393)
T PRK15011 198 RKE----LPLAT-----------------------------G--TLEA---PRRNRRDTLLLFVICTLMW----GTNSLY 235 (393)
T ss_pred CCC----Ccccc-----------------------------c--cccc---cccccccHHHHHHHHHHHH----HHHHHH
Confidence 421 00000 0 0000 0011111111111111111 112233
Q ss_pred HHhHHHH-HhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHH
Q psy12242 315 IYFSTKI-FTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFC 393 (498)
Q Consensus 315 ~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (498)
..+.|.+ .++.|+++.+.+.+.....++.+++.++.|+++||++||+.+..+.....+....+.. .+ .....
T Consensus 236 ~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~ 308 (393)
T PRK15011 236 IINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLM----AH---SPAIL 308 (393)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH----Hh---hHHHH
Confidence 3344544 4667999888888887777888899999999999999998776554443333222211 11 11111
Q ss_pred HHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhHH-HHHHHHHHHHHHHH
Q psy12242 394 IILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIHGYV-FTIFAVLQAMFVLF 472 (498)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~~~-~~~~~~~~~~~~~~ 472 (498)
+....+.....+. ..+....+..|..|+ .++++.++.+...++|..++|.+.|.+.+..++.. +.+.+++.++ .++
T Consensus 309 l~~~~l~~~~~g~-~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~-~~~ 385 (393)
T PRK15011 309 LGLQLLNAIYIGI-LGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIA-TLF 385 (393)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHH
Confidence 1111111111111 112334566788885 48999999999999999999999999999888644 3444444444 444
Q ss_pred HHHhccC
Q psy12242 473 IYKKVPE 479 (498)
Q Consensus 473 ~~~~~~~ 479 (498)
.++..||
T Consensus 386 ~~~~~~~ 392 (393)
T PRK15011 386 CLLRIKD 392 (393)
T ss_pred HHHhhcC
Confidence 4444443
|
|
| >KOG2533|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-28 Score=236.04 Aligned_cols=297 Identities=15% Similarity=0.168 Sum_probs=213.1
Q ss_pred HHHHHHHhhhhhccccccccccCC-cHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhHH
Q psy12242 30 AFAISASALGSSFQHGYNTGVFNA-PQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATG 108 (498)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g 108 (498)
+.+...+++. .+....+...++- .+..+++|.+ ...++. +.+.++++++++++.+++|
T Consensus 44 l~i~~~~~~~-y~~~~~d~~si~~a~l~g~~edl~----------------~~~~~l----~~~~t~F~v~Yii~~~p~~ 102 (495)
T KOG2533|consen 44 LFILPFLCYL-YFHAYLDKSSIVNASLSGLKEDLK----------------LVGNQL----GVLDTVFYVGYIIGQFPSG 102 (495)
T ss_pred HHHHHHHHHH-HHHHhcchhcchhHHHcCCccccc----------------hhhhhh----hhHHHHHHHHHHHHHhhHH
Confidence 3444455555 5555566544332 2233445555 555566 9999999999999999999
Q ss_pred HHHHhhccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHHHHH
Q psy12242 109 YVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVI 188 (498)
Q Consensus 109 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~ 188 (498)
.+.||++..+.+....+++++..++.... +|++.+++.|++.|+.++..+|....+++.|+.+++|++.++++.+..
T Consensus 103 ~L~~r~~ls~~l~~~~~~w~~~~~~~~~~---~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~ 179 (495)
T KOG2533|consen 103 LLGDRFPLSKGLSVSGILWGLFGFLTAAV---HSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASA 179 (495)
T ss_pred HHHHhCChHHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhc
Confidence 99999999999999999999888888777 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCccc----CCCCchhHHHHhhhHHHHHHH-hhcccccCChhhHHHhcCCHHHHHHHHHhhcCCchhHH
Q psy12242 189 TISIVISQILGLGGLL----GTADGWPLLLAFTLVPGIYQM-ITLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHD 263 (498)
Q Consensus 189 ~~g~~~~~~i~~~~~~----~~~~~wr~~f~~~~~~~~~~~-~~~~~~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~ 263 (498)
++|.++|.+++.+..- ....||||.|++.+++.++.. +.++++|+.|... .-.+++|.+-..
T Consensus 180 ~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~--~fl~~~ek~~~~----------- 246 (495)
T KOG2533|consen 180 SLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKA--WFLTDEEKELVV----------- 246 (495)
T ss_pred chhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhc--cccchHHHHHHH-----------
Confidence 9999999998654111 345799999999887766655 5567799998621 000111100000
Q ss_pred HHHHHHHhHHh--hhcCCCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHHhh-cCCCchhHHHHHHHHH
Q psy12242 264 EMDEMRAEYES--IKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTM-AQLSDTAAQWATLGMG 340 (498)
Q Consensus 264 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~ 340 (498)
++.++.... .++.++..+++.+++|..|. .++..++... ..+.+.++.|.++++ .|++..++..+.++..
T Consensus 247 --~~~~~~~~~~~~~~~~~~~~~~a~~dp~vw~----~~l~~~~~~l-v~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~ 319 (495)
T KOG2533|consen 247 --ERLRESPSGGIENKFKWKGFKEALKDPGVWP----FSLCYFFLKL-VNYGFSYWLPLYLKSNGGYSELQANLLSTPYD 319 (495)
T ss_pred --HHHHhccCCCcccccCHHHHHHHHhchhHHH----HHHHHHHHhh-ccccHHHHHHHHHHcCCCcChHHhccccchHH
Confidence 011111110 11134567788888885543 2333333222 245677778888876 5699999999999999
Q ss_pred HHHHHHHHhhhhhhhcc----CCceehhhhhHHH
Q psy12242 341 TMNVVMTLVSLVLVEIS----GRKTLLLIGFMGV 370 (498)
Q Consensus 341 ~~~~~~~~~~g~l~dr~----g~~~~~~~~~~~~ 370 (498)
++++++.+++|+++||. .+|........+.
T Consensus 320 ~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~ 353 (495)
T KOG2533|consen 320 VGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLY 353 (495)
T ss_pred hhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 99999999999999994 4554444433333
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-28 Score=232.00 Aligned_cols=338 Identities=15% Similarity=0.163 Sum_probs=219.0
Q ss_pred ccccccCCcHHH-HHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhhHHHH
Q psy12242 46 YNTGVFNAPQKL-ISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINN 124 (498)
Q Consensus 46 ~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~ 124 (498)
.+....++..|. ++++++ .++.+. +++.+++.+++.++++++|+++||+|||+.+.++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~----------------~s~~~~----~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~ 74 (366)
T TIGR00886 15 SVWFAFSPLAVQMIKDDLG----------------LSTAQL----GNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSL 74 (366)
T ss_pred HHHHHhHHhhhHHHHHHhC----------------CCHHHh----hHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence 344445667774 888888 888888 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhccc-hhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHHHHHHHHHHHHHHHhcC--
Q psy12242 125 VFVVLAALLQGFSKAFS-SYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLG-- 201 (498)
Q Consensus 125 ~~~~~~~~~~~~~~~~~-~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~-- 201 (498)
++..++.++++++ + +++.+++.|+++|++.+ ..+...+++.|++|+++|+++.++...+.++|..+++.++..
T Consensus 75 ~~~~i~~~~~~~~---~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~ 150 (366)
T TIGR00886 75 LLLAIPCLWAGLA---VQSYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPII 150 (366)
T ss_pred HHHHHHHHHHHHH---hhhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 9999999999998 8 99999999999999966 456678899999999999999999987777777766654311
Q ss_pred ccc------CCCCchhHHHHh-hhHHH-HHHHhhcccccCChhhHHHhcCCHHHHHHHHHhhcCCchhHHHHHHHHHhHH
Q psy12242 202 GLL------GTADGWPLLLAF-TLVPG-IYQMITLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDEMDEMRAEYE 273 (498)
Q Consensus 202 ~~~------~~~~~wr~~f~~-~~~~~-~~~~~~~~~~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (498)
... ..+.+||+.|++ .++.. ++.++...+.+|+|+. ++++++.+. .....
T Consensus 151 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-----~~~~~------------- 208 (366)
T TIGR00886 151 GSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPPG----KPATGKLSF-----KGARW------------- 208 (366)
T ss_pred HHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcccCCcc----cccchhccc-----ccccc-------------
Confidence 111 124589999944 34333 3333444556666521 111100000 00000
Q ss_pred hhhcCCCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHH-hhcCCCchhHHHHHHHHHHHHHHHHHhhhh
Q psy12242 274 SIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIF-TMAQLSDTAAQWATLGMGTMNVVMTLVSLV 352 (498)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 352 (498)
..+++.....++.+++++.+...+. .+.... .......+.+.+. +.+|+++.+++.......+..+++.++.++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 283 (366)
T TIGR00886 209 SVGTGALGDQLKVFRDRHTWILALL----YSVTFG-SFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGA 283 (366)
T ss_pred cccchhHHHHHHHHhccchhhHHHH----HHHHHH-HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccch
Confidence 0000001134556666654422221 111111 1223334444444 567999999998888899999999999999
Q ss_pred hhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHH
Q psy12242 353 LVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLA 432 (498)
Q Consensus 353 l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~ 432 (498)
+.||+++|+.+..+......+...+....... .................+. ..+..+....|..| +++|+++|+.
T Consensus 284 l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~-~~~g~~~g~~ 358 (366)
T TIGR00886 284 ISDRLGGARKLLMSFLGVAMGAFLVVLGLVSP---LSLAVFIVLFVALFFFSGA-GNGSTFALVPHIFR-RATGAVSGLV 358 (366)
T ss_pred HHHhhccchhHHHHHHHHHHHHHHHHhcCCCc---chHHHHHHHHHHHHHHhcc-ccchhhhcchhhch-hhcccHHHHH
Confidence 99999998877766655555544443321100 0111111112222222222 22445567778877 6899999998
Q ss_pred HHHHHHH
Q psy12242 433 VSINWTA 439 (498)
Q Consensus 433 ~~~~~~~ 439 (498)
+...++|
T Consensus 359 ~~~~~~g 365 (366)
T TIGR00886 359 GAIGNLG 365 (366)
T ss_pred HHhccCC
Confidence 8877654
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.9e-27 Score=225.38 Aligned_cols=366 Identities=14% Similarity=0.042 Sum_probs=238.5
Q ss_pred ccccccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh-----cc
Q psy12242 42 FQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERF-----GR 116 (498)
Q Consensus 42 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-----Gr 116 (498)
+..+...+.....+|..-++.+ .+.+++ |++..+... .+..+++|+++||+ ||
T Consensus 9 ~~~~~~~~~~~~~~~~~l~~~g----------------~~~~~i----g~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~ 66 (402)
T PRK11902 9 FASGLPLALTSGTLQAWMTVEG----------------LDIQTI----GFFSLVGQA--YIFKFLWAPLMDRYTPPLLGR 66 (402)
T ss_pred HHHhhhHHHHHHHHHHHHHHcC----------------CCHHHH----HHHHHHHHH--HHHHHHHHHHHHcccccCCCc
Confidence 4455666666666666655545 788888 888776665 58899999999999 88
Q ss_pred ch-hhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHHHHHHHHHHHH
Q psy12242 117 KG-GLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVIS 195 (498)
Q Consensus 117 r~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~ 195 (498)
|| .++.+.++.+++..+.++.+...+++.+++..++.++..+...+...+++.|++|+|+|+++.++...+.++|.+++
T Consensus 67 rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g 146 (402)
T PRK11902 67 RRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVS 146 (402)
T ss_pred chhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHH
Confidence 76 78888888888888777764334678888888888998999999999999999999999999999999999999999
Q ss_pred HHHhcCcccCCC-CchhHHHHhhhHHHHHHHhhcccccCChhhHHHhcCCHHHHHHHHHhhcCCchhHHHHHHHHHhHHh
Q psy12242 196 QILGLGGLLGTA-DGWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDEMDEMRAEYES 274 (498)
Q Consensus 196 ~~i~~~~~~~~~-~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (498)
+.+.. .+.+. .+||..|++.++..++..+..+++||+++. ++++++. ++
T Consensus 147 ~~l~~--~l~~~~~gw~~~f~i~a~~~l~~~l~~~~~~e~~~~----~~~~~~~--------------------~~---- 196 (402)
T PRK11902 147 GGLAL--WLADRVLGWGNTYLLMAGLMLAGALTTLWAPEPEVP----ARPPRSL--------------------GE---- 196 (402)
T ss_pred hHHHH--HHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCccc----ccccchh--------------------HH----
Confidence 88542 44443 599999999877766655555567776421 1000000 00
Q ss_pred hhcCCCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHHhhcCCCchhHHHHHHHHH-HHHHHHHHhhhhh
Q psy12242 275 IKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTMAQLSDTAAQWATLGMG-TMNVVMTLVSLVL 353 (498)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~g~l 353 (498)
+.+.++++++|+|.++...+.......... ....+..+++.++.|+++.+.++.....+ ++.+++.++++++
T Consensus 197 ---~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~----~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l 269 (402)
T PRK11902 197 ---AVVGPLRDFFSRRGAWALLLLIVLYKLGDA----FAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTL 269 (402)
T ss_pred ---HHHHHHHHHHhCcCHHHHHHHHHHHHhHHH----HHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 011245677888765543332222222111 11233445566778999999888876554 4689999999999
Q ss_pred hhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH---HHHHHHhcCccchhhhhhcccCCCChhhHHHH
Q psy12242 354 VEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVI---MFVVFFAVGPGSIPWFLVSELFSQSARPLATS 430 (498)
Q Consensus 354 ~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g 430 (498)
.||+++|+.+..+..+..+..+.+.......+ ..+....... +..+.......+....++.+.+|.+. .+
T Consensus 270 ~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~ 342 (402)
T PRK11902 270 MVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPK---HLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ----YA 342 (402)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH----HH
Confidence 99999998876666555544433322211111 1111111111 12222222233455556666666544 45
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhhHH-HHHHHHHHHHHHHHH
Q psy12242 431 LAVSINWTANFIVGLGFLPIESIIHGYV-FTIFAVLQAMFVLFI 473 (498)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~l~~~~g~~~-~~~~~~~~~~~~~~~ 473 (498)
+.+....++..+++.+.|.+.|..|+.. +.+.+.+++++.++.
T Consensus 343 ~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 343 LLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALL 386 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 5555666777777778999999999754 444444444444443
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.6e-27 Score=223.89 Aligned_cols=350 Identities=13% Similarity=-0.002 Sum_probs=234.2
Q ss_pred ccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccc----hhhH
Q psy12242 46 YNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRK----GGLL 121 (498)
Q Consensus 46 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr----~~l~ 121 (498)
...+++.+.+|...++++ .+..++ |++.+++.++..++++++|+++||+||| +.+.
T Consensus 18 ~~~g~~~p~l~~~l~~~g----------------~s~~~i----G~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~ 77 (382)
T PRK11128 18 FAYGVFLPFWSVWLKGQG----------------YTPETI----GLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLA 77 (382)
T ss_pred HHHHHHhhhHHHHHHhcC----------------CCHHHH----HHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHH
Confidence 334455566666667666 788888 9999999999999999999999999994 3332
Q ss_pred HHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHHHHHHHHHHHHHHHhcC
Q psy12242 122 INNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLG 201 (498)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~ 201 (498)
+...+. .......+ ++++.+++.|++.|++.+...+...++..++ +++|+++.+......++|.++||+ ++
T Consensus 78 ~~~~~~--~~~~~~~~---~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~--lg 148 (382)
T PRK11128 78 LLTLLF--AVAFWFGA---HSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSA--LT 148 (382)
T ss_pred HHHHHH--HHHHHHhc---ccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHH--HH
Confidence 222221 22223334 7899999999999999998999888887776 367888999999999999999999 44
Q ss_pred cccCCCCchhHHHHhhhHHHHHHHhhcccccCChhhHHHhcCCHHHHHHHHHhhcCCchhHHHHHHHHHhHHhhhcCCCc
Q psy12242 202 GLLGTADGWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIPKV 281 (498)
Q Consensus 202 ~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (498)
+++.++.+||..|++.++..++..+...+.||+++ +++++ +.+++...
T Consensus 149 g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~-----~~~~~---------------------------~~~~~~~~ 196 (382)
T PRK11128 149 GKLVSWFGEQAILWILTAGVASMLLGQLLRPTIMP-----QGESR---------------------------QQESAGWP 196 (382)
T ss_pred HHHHHHcChhHHHHHHHHHHHHHHHHHHccCCCCC-----ccccc---------------------------cccccccc
Confidence 57878889999998877655444443344454321 00000 00001123
Q ss_pred hhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCce
Q psy12242 282 SLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKT 361 (498)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~ 361 (498)
++++++|+|.++...+..++.... ......+.+.+.++.|.+..+.+.......+..++..++.+++.||+++|+
T Consensus 197 ~~~~i~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~ 271 (382)
T PRK11128 197 AWKALLKEPTVWRFLLCVSLLQGS-----HAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARD 271 (382)
T ss_pred hHHHHHcChhHHHHHHHHHHHHHH-----hHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Confidence 567888887655433322222221 222333334455678999989999988888899999999999999999999
Q ss_pred ehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHH-HHHHH
Q psy12242 362 LLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSI-NWTAN 440 (498)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~-~~~~~ 440 (498)
.+..+....++..+.+... ...+.......+....... ..+....+..+. +++++++..++.+.. ...|.
T Consensus 272 ~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~ 342 (382)
T PRK11128 272 LLLLSAICGVVRWGLMGST-------TALPWLIVIQILHCGTFTV-CHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSI 342 (382)
T ss_pred HHHHHHHHHHHHHHHHHhh-------hhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHH
Confidence 9888877777765554432 1122222222222222222 234455566665 566678888887644 45677
Q ss_pred HHHHHhHHHHHHhhhhHHHHHHHHHHHHHH
Q psy12242 441 FIVGLGFLPIESIIHGYVFTIFAVLQAMFV 470 (498)
Q Consensus 441 ~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~ 470 (498)
.++|.+.|.+.|..+...++..+++.+++.
T Consensus 343 ~ig~~i~G~l~~~~g~~~~~~~~~~~~~~~ 372 (382)
T PRK11128 343 AIMTVLSGFLYQHLGAGVFWVMALVALPAL 372 (382)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 899999999999988766665555554443
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=8e-27 Score=224.87 Aligned_cols=349 Identities=11% Similarity=-0.001 Sum_probs=225.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcc-chhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhh
Q psy12242 80 IEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGR-KGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSG 158 (498)
Q Consensus 80 ~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Gr-r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g 158 (498)
.+..|. |++.+++.++..++++++|+++||+|| |+++.++.++..++..+..+. ++++.+++.|++.|++.+
T Consensus 35 ~s~~~i----Gl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~ 107 (418)
T TIGR00889 35 FSGAEI----GWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQV---TTPAGMFPVLLANSLAYM 107 (418)
T ss_pred CCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHc
Confidence 788888 999999999999999999999999965 778888888888888888887 899999999999999877
Q ss_pred hhhcchhhhhh--------ccCcccchhhhHhHHHHHHHHHHHHHHHHhcCcccCCCCchhHHHHhhhHHHHHHHhhccc
Q psy12242 159 LNAGLAPMYLA--------EISPVHLRGAVGTVYQLVITISIVISQILGLGGLLGTADGWPLLLAFTLVPGIYQMITLPF 230 (498)
Q Consensus 159 ~~~~~~~~~i~--------~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 230 (498)
...+...++.. |......|.+..| .+|.+++++++ +.+.....|+. |++.++..++..+..++
T Consensus 108 ~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~--g~l~~~~~~~~-f~~~~~~~~~~~~~~~~ 178 (418)
T TIGR00889 108 PTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAV--SLLDIELSNIQ-LYITAGSSALLGVFALT 178 (418)
T ss_pred cHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHH--HHhcccchhHH-HHHHHHHHHHHHHHHhc
Confidence 77666655432 2233334555555 35666666632 23333334654 44555444444444567
Q ss_pred ccCChhhHHHhcCCHHHHHHHHHhhcCCchhHHHHHHHHHhHHhhhcCCCchhhhHhccccchhhHHHHHHHHHHHHhhc
Q psy12242 231 CPESPKYILLSKGQELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSG 310 (498)
Q Consensus 231 ~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (498)
+||+|+. ++++++ + . ++..+.+.++++|++.++...+..++....
T Consensus 179 ~~e~~~~----~~~~~~-------------------~-----~--~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~----- 223 (418)
T TIGR00889 179 LPDIPVA----KSTAKM-------------------S-----I--KVMLGLDAFILFKNKRMAIFFFFSMLLGAP----- 223 (418)
T ss_pred CCCCCCC----cccccc-------------------C-----H--HHHhhhhHHHHhcCCCeeeHHHHHHHHHhH-----
Confidence 7887521 110000 0 0 000011234567777665433333322221
Q ss_pred hHHHHHhHHHHHhhcCCCc--------hhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHH
Q psy12242 311 INAVIYFSTKIFTMAQLSD--------TAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQ 382 (498)
Q Consensus 311 ~~~~~~~~~~~~~~~g~~~--------~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~ 382 (498)
......+.+.+.++.|.++ ...+.......+..+++.+..+++.||+|+|+.+..+.++..+....+....
T Consensus 224 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~- 302 (418)
T TIGR00889 224 LQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGD- 302 (418)
T ss_pred HHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcC-
Confidence 1122233344455555443 5568888888999999999999999999999999888887777655554311
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHH-HHHHHHHHHHHHhHHHHHHhhh------
Q psy12242 383 FVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAV-SINWTANFIVGLGFLPIESIIH------ 455 (498)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~~~~~~~~~~~~l~~~~g------ 455 (498)
.. ......+....++.+.......+....++.|.+|++.|++++|+.+ ....+|..++|.+.|.+.|..+
T Consensus 303 --~~-~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~ 379 (418)
T TIGR00889 303 --PE-YFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFD 379 (418)
T ss_pred --cc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCc
Confidence 00 1111111222222222222233555677889999999999999997 5677899999999999999864
Q ss_pred h-HHHHHHHHHHHHHHHHHHHhccCCCCC
Q psy12242 456 G-YVFTIFAVLQAMFVLFIYKKVPETKNK 483 (498)
Q Consensus 456 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (498)
+ ..+.+.+++.++..++.+++.+|+++.
T Consensus 380 ~~~~f~~~~~~~~i~~~l~~~~~~~~~~~ 408 (418)
T TIGR00889 380 WQTMWLFFAGYIAILAVLFMIFFKYSHNA 408 (418)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence 3 355666667677777777777776554
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.8e-26 Score=203.11 Aligned_cols=361 Identities=13% Similarity=0.144 Sum_probs=262.0
Q ss_pred hccccccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhh
Q psy12242 41 SFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGL 120 (498)
Q Consensus 41 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l 120 (498)
.++.|+.....+...|.+++.|+ ++..|. +++...++.|+.+++++.|++.+|+|+|+.+
T Consensus 22 Ffl~G~~~~l~diLip~l~~~f~----------------ls~~~a----~liqfaff~gYf~~~lpa~~~~kk~gyk~gi 81 (422)
T COG0738 22 FFLWGFITCLNDILIPHLKEVFD----------------LTYFEA----SLIQFAFFGGYFIMSLPAGLLIKKLGYKAGI 81 (422)
T ss_pred HHHHHHHhhcchhhHHHHHHHhC----------------ccHHHH----HHHHHHHHHHHHHHhccHHHHHHHhhhHHHH
Confidence 47788888888899999999999 899998 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHHHHHHHHHHHHHHHhc
Q psy12242 121 LINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGL 200 (498)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~ 200 (498)
++|+.++++++.+..-++...++..++++-++.|.|.+...+.++.++....++++..+.+++.+.+.++|.+++|+++-
T Consensus 82 ~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~ 161 (422)
T COG0738 82 VLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGS 161 (422)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 99999999999999755555899999999999999999999999999999999998999999999999999999999653
Q ss_pred CcccC-----------------CCCchhHHHHhhhHHHHHHHhhccc--ccCChhhHHHhcCCHHHHHHHHHhhcCCchh
Q psy12242 201 GGLLG-----------------TADGWPLLLAFTLVPGIYQMITLPF--CPESPKYILLSKGQELEAQRALSWLRGTIEV 261 (498)
Q Consensus 201 ~~~~~-----------------~~~~wr~~f~~~~~~~~~~~~~~~~--~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~ 261 (498)
..... +...||++|...+...++..+.... .||.+. ..
T Consensus 162 ~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~------~~----------------- 218 (422)
T COG0738 162 SLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQV------AA----------------- 218 (422)
T ss_pred HHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCc------cc-----------------
Confidence 21220 0124788887766655554444333 333311 00
Q ss_pred HHHHHHHHHhHHhhhcCCCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHHhhcCCCchhHHHHHHHHHH
Q psy12242 262 HDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTMAQLSDTAAQWATLGMGT 341 (498)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 341 (498)
++..+.++....+++++|.++.- .+..+++...+ ....++...+..+..|.+..++....+....
T Consensus 219 -----------~~~~~~~~~~~~~l~~~~~~~~g-vl~~FlYVG~E---va~gsfl~~y~~~~~g~~~~~aa~~~s~~~~ 283 (422)
T COG0738 219 -----------PSLGASGSAGLSSLFQNKHLRLG-VLAIFLYVGAE---VAIGSFLVSYLEELLGLNEQQAAYYLSFFWV 283 (422)
T ss_pred -----------ccccccccchHHHHHhChHHHHH-HHHHHHHHhHH---HHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 01111111156788888865543 33333333333 3334444444445589999999999999999
Q ss_pred HHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCC
Q psy12242 342 MNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFS 421 (498)
Q Consensus 342 ~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 421 (498)
+.++|++++.++.+|+...|.+.+...+..+.++...+. .....+.. ....+.+.....|..++...+..|
T Consensus 284 ~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~--------~g~v~~~~-l~~ig~F~simfPTIfslal~~l~ 354 (422)
T COG0738 284 GFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALI--------GGVVALYA-LFLIGLFNSIMFPTIFSLALKNLG 354 (422)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHh--------cChHHHHH-HHHHHHHhHHHHHHHHHHHHhccC
Confidence 999999999999999998888877665555544444432 22222222 333444455566888888889888
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhH-HHHHHHHHHHHHH
Q psy12242 422 QSARPLATSLAVSINWTANFIVGLGFLPIESIIHGY-VFTIFAVLQAMFV 470 (498)
Q Consensus 422 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~~-~~~~~~~~~~~~~ 470 (498)
++... .|..-...-.|+++.|.+.|++.|..+.. .+......|.+-.
T Consensus 355 -~~ts~-~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV 402 (422)
T COG0738 355 -EHTSV-GSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYV 402 (422)
T ss_pred -ccccc-cceeeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 33333 33344455589999999999999998853 3333444444444
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=4e-26 Score=221.49 Aligned_cols=354 Identities=10% Similarity=0.006 Sum_probs=211.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhccchhH-HHHHHHHHHHhhhh
Q psy12242 80 IEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYE-MIILGRFLIGINSG 158 (498)
Q Consensus 80 ~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~l~G~~~g 158 (498)
.+..+. |++.+++.++..++++++|+++||+|||++++++..+.+++..........+.+. .......+.++..+
T Consensus 43 ~s~~~~----g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (420)
T PRK09528 43 LSGTDT----GIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLG 118 (420)
T ss_pred CCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 788888 9999999999999999999999999999999887666554433221110001111 11122223333333
Q ss_pred hhhcchhhhhhccCc--ccchhhhHhHHHHHHHHHHHHHHHHhcCcccCCCCchhHHHHhhhHHHHHHHhhcccc-cCCh
Q psy12242 159 LNAGLAPMYLAEISP--VHLRGAVGTVYQLVITISIVISQILGLGGLLGTADGWPLLLAFTLVPGIYQMITLPFC-PESP 235 (498)
Q Consensus 159 ~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~e~p 235 (498)
.........+.++.+ .+++++.++......++|..++++++ +.+.+ .+|++.|++.++..++..+..++. +|+|
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~--g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 195 (420)
T PRK09528 119 FGFLAGAGAIEAYIERVSRRSGFEYGRARMWGSLGWALCAFIA--GILFN-INPQINFWLGSGSALILLVLLFFAKPDAP 195 (420)
T ss_pred hhhccchhhhhhHHHHHHhhccccchhhHHhhhHHHHHHHHHH--HHHHh-cCchHhHHHHHHHHHHHHHHHhccccccc
Confidence 333333333333333 24567788888888899999999853 34443 489999998887776666555544 3332
Q ss_pred hhHHHhcCCHHHHHHHHHhhcCCchhHHHHHHHHHhHHhhhcCCCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHH
Q psy12242 236 KYILLSKGQELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVI 315 (498)
Q Consensus 236 ~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (498)
+. .+.++++ .+++++.+....++.+|+|.++...+..+....... ....
T Consensus 196 ~~---~~~~~~~------------------------~~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~~~~----~~~~ 244 (420)
T PRK09528 196 ST---AKVANAL------------------------GANASAVSLKDALALLKLPKFWFLVLYVIGVACFYD----VFDQ 244 (420)
T ss_pred ch---hhhccch------------------------hcccccccHHHHHHHccCCCeEeehHHHHHHHHHHH----HHHH
Confidence 11 0000000 000001111234557777766543332222222111 1111
Q ss_pred HhHHHH---HhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHH
Q psy12242 316 YFSTKI---FTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIF 392 (498)
Q Consensus 316 ~~~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (498)
.++++. ..+.+.+..+.+.......+...++.++.+++.||+++|+.+..+..+..+...++.+.. ..+.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~-------~~~~ 317 (420)
T PRK09528 245 QFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFAT-------GPLE 317 (420)
T ss_pred HHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcc-------cHHH
Confidence 222222 222356667778888888889999999999999999999998887777776665554421 1111
Q ss_pred HHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHH-HHHHHHHHHHHHHHhHHHHHHhhhh-HHHHHHHHHHHHHH
Q psy12242 393 CIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSL-AVSINWTANFIVGLGFLPIESIIHG-YVFTIFAVLQAMFV 470 (498)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~-~~~~~~~~~~~~~~~~~~l~~~~g~-~~~~~~~~~~~~~~ 470 (498)
.. ......+.......+....+..|.+|++.+++..+. .+....+|..+++.+.|.+.|..|+ ..+...+++.++..
T Consensus 318 ~~-~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~ 396 (420)
T PRK09528 318 VS-ILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFT 396 (420)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHH
Confidence 11 112222222211223445677788899999888765 5677889999999999999998886 45555666666666
Q ss_pred HHHHHhccC
Q psy12242 471 LFIYKKVPE 479 (498)
Q Consensus 471 ~~~~~~~~~ 479 (498)
++.+...++
T Consensus 397 ~~~~~~~~~ 405 (420)
T PRK09528 397 LISVFTLSG 405 (420)
T ss_pred HHHHHHhcC
Confidence 555554444
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.5e-26 Score=216.44 Aligned_cols=332 Identities=12% Similarity=0.072 Sum_probs=221.0
Q ss_pred cccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh-----ccchh-hHH
Q psy12242 49 GVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERF-----GRKGG-LLI 122 (498)
Q Consensus 49 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-----Grr~~-l~~ 122 (498)
..++...|.+.++++ ++.++. |+..+. .+...+ .+++|+++||+ ||||. ++.
T Consensus 5 ~~~~~~~~~~~~~~g----------------~s~~~~----g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~ 62 (356)
T TIGR00901 5 GLVGNTLPYWLRSKN----------------VSLKTI----GFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVL 62 (356)
T ss_pred hhHHhHHHHHHHHcC----------------CCHHHH----HHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHH
Confidence 345667788888877 888888 888655 455555 89999999998 89887 567
Q ss_pred HHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHHHHHHHHHHHHHHHhcCc
Q psy12242 123 NNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGG 202 (498)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~ 202 (498)
+.++.++...+.++.+...+.+.+....++.+++.+...+...+++.|++|+|+|+++.++...+.++|.++++.++ +
T Consensus 63 ~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~--~ 140 (356)
T TIGR00901 63 TQVLLLSLLLILSFLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLA--L 140 (356)
T ss_pred HHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHH--H
Confidence 77777777777777643456677788888899999989999999999999999999999999999999999999854 3
Q ss_pred ccCCCCc--------hhHHHHhhhHHHHHHHhhccc-ccCChhhHHHhcCCHHHHHHHHHhhcCCchhHHHHHHHHHhHH
Q psy12242 203 LLGTADG--------WPLLLAFTLVPGIYQMITLPF-CPESPKYILLSKGQELEAQRALSWLRGTIEVHDEMDEMRAEYE 273 (498)
Q Consensus 203 ~~~~~~~--------wr~~f~~~~~~~~~~~~~~~~-~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (498)
.+.+..+ ||..|++.++..++..+..++ .||+++. ++++++ +. .
T Consensus 141 ~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~----~~~~~~----------------~~----~--- 193 (356)
T TIGR00901 141 VLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQED----ASVPKP----------------LT----Q--- 193 (356)
T ss_pred HHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccCCCcc----cccchh----------------HH----H---
Confidence 5544555 999999988877766655443 5664211 000000 00 0
Q ss_pred hhhcCCCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHHhhcCCCchhHHHHHHHHH-HHHHHHHHhhhh
Q psy12242 274 SIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTMAQLSDTAAQWATLGMG-TMNVVMTLVSLV 352 (498)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~g~ 352 (498)
+ .+..++++++++..++ .+......+..... ......+.+.+.++.|+++.+.+......+ +..+++.+++++
T Consensus 194 ~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~ 267 (356)
T TIGR00901 194 A----VLKPIREFFQRKNMIQ-ALLLLLLIVLYKLG-DSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGI 267 (356)
T ss_pred H----HHHHHHHHHHhcCchH-HHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 0 0113455666654222 22222222222222 233444445555558999999888877665 578899999999
Q ss_pred hhhccCCceehhhhhHHHHHHHHHHHHHHHHhhh---hhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHH
Q psy12242 353 LVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEI---FVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLAT 429 (498)
Q Consensus 353 l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 429 (498)
+.||+|+|+.+..+.++.++....+.+.....+. .......+....++..+......+...++..|.+|+++||+.+
T Consensus 268 l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~ 347 (356)
T TIGR00901 268 IMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQM 347 (356)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHH
Confidence 9999999998887777766655544432211100 0011122222222223333334577788999999999999999
Q ss_pred HHHHHHHH
Q psy12242 430 SLAVSINW 437 (498)
Q Consensus 430 g~~~~~~~ 437 (498)
|+.+...+
T Consensus 348 g~~~~~~~ 355 (356)
T TIGR00901 348 ALLSSLSA 355 (356)
T ss_pred HHHHHHHh
Confidence 99887653
|
|
| >KOG2504|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-27 Score=229.58 Aligned_cols=403 Identities=14% Similarity=0.125 Sum_probs=273.5
Q ss_pred cchHHHHHHHHHhhhhhccccccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHH
Q psy12242 25 LNGKLAFAISASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGG 104 (498)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~ 104 (498)
...+-|.+++...+...+.+|.... ++...+.+.++++ .+.+++ +|+.++....+.+.+
T Consensus 40 dGG~gWvV~~a~fl~~~~~~g~~~~-~Gv~~~~~~~~f~----------------~s~~~~----~~i~sl~~~~~~~~g 98 (509)
T KOG2504|consen 40 DGGWGWVVVFASFLVNLSTDGLINS-FGLLFEELMDYFG----------------SSSSQI----AWIGSLLLGVYLLAG 98 (509)
T ss_pred CCCeeeeeeHhHHHHHHhhhcchhe-ehhhHHHHHHHhC----------------CCccHH----HHHHHHHHHHHHHhc
Confidence 4455666665555553445555554 3556677888877 677777 999999999999999
Q ss_pred HhHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHH-HHHHHhhhhhhhcchhhhhhccCcccchhhhHhH
Q psy12242 105 AATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILG-RFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTV 183 (498)
Q Consensus 105 ~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~ 183 (498)
|+.+.+.||+|.|++.++|.++..+|.++.+++ +++|++++. -++.|+|.|..+......+..+|+ |+|+.+.|+
T Consensus 99 pl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~---~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~-kkR~lA~Gi 174 (509)
T KOG2504|consen 99 PLVSALCNRFGCRTVMIAGGLVAALGLLLSSFA---TSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFE-KKRALATGI 174 (509)
T ss_pred cHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHhhccchhhhcchhhhhhhHhH-HHHHHHHhh
Confidence 999999999999999999999999999999999 888887765 688999999999999999998887 889999999
Q ss_pred HHHHHHHHHHHHHHHhcCcccCCCCchhHHHHhhhHHHHHHHhhccc-ccCChhhHHHhcCCHHHHHHHHHh--------
Q psy12242 184 YQLVITISIVISQILGLGGLLGTADGWPLLLAFTLVPGIYQMITLPF-CPESPKYILLSKGQELEAQRALSW-------- 254 (498)
Q Consensus 184 ~~~~~~~g~~~~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e~p~~l~~~~~~~~~a~~~~~~-------- 254 (498)
...+.++|.++-|++ ...+.+..|||+.+++.+.+.+-.++.... -|.+++. .+. .++..+....
T Consensus 175 a~~GsG~G~~~~~~l--~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~---~~~-~~~~~~~~~~~~~~~~~~ 248 (509)
T KOG2504|consen 175 AVSGTGVGTVVFPPL--LKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPK---KPN-EEKDLRNSAASVESTPKP 248 (509)
T ss_pred hhccCCcceeeHHHH--HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCC---Cch-hhhhhccccccccccccc
Confidence 999999999999884 347778899999999887666555544333 3433221 111 0000000000
Q ss_pred ----hcCCc-hhH----HHHHHHHHhHHhhh-cCCCchh----hhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHH
Q psy12242 255 ----LRGTI-EVH----DEMDEMRAEYESIK-LIPKVSL----REMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTK 320 (498)
Q Consensus 255 ----~~~~~-~~~----~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (498)
....+ ... .+....++..++.+ ...+... .++++++. ++.+.........++.....+.+.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~-----fl~~~~~~~~~~~g~~~p~~~l~~ 323 (509)
T KOG2504|consen 249 VELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPK-----FLLLALSNLFAYLGFNVPFVYLPS 323 (509)
T ss_pred cccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcCch-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 000 00001111111000 0111111 45666653 344444444444456666777777
Q ss_pred HHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCcee--hhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q psy12242 321 IFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTL--LLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVI 398 (498)
Q Consensus 321 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (498)
+.+..|++..+++...++.++..++++++.|++.|+...++. ..++.+..+++.+.++. ...+..++...
T Consensus 324 ~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~--------~~~~~~l~~~~ 395 (509)
T KOG2504|consen 324 YAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPF--------ATTYVGLIVFS 395 (509)
T ss_pred HHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHH--------hccHHHHHHHH
Confidence 778999999999999999999999999999999999884443 33444444444433333 22333344444
Q ss_pred HHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh--HHHHHHHHHHHHHHH
Q psy12242 399 MFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIHG--YVFTIFAVLQAMFVL 471 (498)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~--~~~~~~~~~~~~~~~ 471 (498)
++.++.......+....+.|+.+.+.-..+.|+...+..++..++|.+.|.+.|..+. ..+...+...+++..
T Consensus 396 ~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~ 470 (509)
T KOG2504|consen 396 ILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAV 470 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHH
Confidence 4444444444455556778999999999999999999999999999999999999883 344544544444443
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.7e-26 Score=246.77 Aligned_cols=326 Identities=13% Similarity=0.053 Sum_probs=222.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhh
Q psy12242 87 MIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPM 166 (498)
Q Consensus 87 ~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~ 166 (498)
...+++.+++.+++.++++++|+++||+|||++++++.++.+++.++..++...++++.++++|+++|++.+...++..+
T Consensus 47 ~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~ 126 (1146)
T PRK08633 47 ILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYG 126 (1146)
T ss_pred HHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHh
Confidence 44599999999999999999999999999999999998777666665544322278999999999999999999999999
Q ss_pred hhhccCcccchhhhHhHHHHHHHHHHHHHHHHhcCcccCCC---------CchhHHHHhhh-HHHHHHHhhcccccCChh
Q psy12242 167 YLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLLGTA---------DGWPLLLAFTL-VPGIYQMITLPFCPESPK 236 (498)
Q Consensus 167 ~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~---------~~wr~~f~~~~-~~~~~~~~~~~~~~e~p~ 236 (498)
++.|++|+++|++++++...+.++|.++|++++ +++... .+|++.+.+.+ ...++.++..+++||+|+
T Consensus 127 ~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (1146)
T PRK08633 127 IIPELVGKENLSRANGLLEAFTIVAILAGTALF--SFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPA 204 (1146)
T ss_pred hhHHhcCcccchhhhhHHHHHHHHHHHHHHHHH--HHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCC
Confidence 999999999999999999999999999999954 344332 23444444433 333344444556788764
Q ss_pred hHHHhcCCHHHHHHHHHhhcCCchhHHHHHHHHHhHHhhhcCCCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHHH
Q psy12242 237 YILLSKGQELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIY 316 (498)
Q Consensus 237 ~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (498)
.. ....+++.. .. .......++.+++++.++..++...+.++ .......+
T Consensus 205 ~~--~~~~~~~~~-------------~~-----------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~ 254 (1146)
T PRK08633 205 AA--PEVFDKKKY-------------LF-----------PKLLWRNLKLLRSDRVLWLAIIGLSYFWF----ISQLAQAN 254 (1146)
T ss_pred CC--ccccccccc-------------cc-----------HHHHHHHHHHHhcCcHHHHHHHHHHHHHH----HHHHHHHh
Confidence 31 000000000 00 00001134556666544432222222221 12223344
Q ss_pred hHHHHHhhcCCCch-hHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q psy12242 317 FSTKIFTMAQLSDT-AAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCII 395 (498)
Q Consensus 317 ~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (498)
+++++.+.+|.+.. ..+++.....++.+++.++.+++.||+++++.+.++.++.+++.+.+.+.. .....+
T Consensus 255 ~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~ 326 (1146)
T PRK08633 255 FPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAP--------SLASVL 326 (1146)
T ss_pred hHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhh--------hHHHHH
Confidence 45555567899988 889999999999999999999999999998888777776666665554421 111222
Q ss_pred HHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy12242 396 LVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIES 452 (498)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~ 452 (498)
+..++.+++.....+...+++.+..|++.||+++|+.+.+.+++..+++.+.+.+..
T Consensus 327 ~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~ 383 (1146)
T PRK08633 327 VLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG 383 (1146)
T ss_pred HHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222233333345566788899999999999999999999998888777665543
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.2e-26 Score=245.53 Aligned_cols=329 Identities=12% Similarity=0.069 Sum_probs=225.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhhHH---HHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcc
Q psy12242 87 MIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLI---NNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGL 163 (498)
Q Consensus 87 ~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~ 163 (498)
.+.++..+++.++++++++++|+++||+|||+++.. ..+...+..+.+... ++++.++++|+++|++.+...|+
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~---~s~~~l~~~~~l~gi~~a~~~p~ 128 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHL---NSVPLLFAALFLMGIHSALFGPI 128 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHhhchH
Confidence 345889999999999999999999999999997533 222333333333344 78999999999999999999999
Q ss_pred hhhhhhccCcccchhhhHhHHHHHHHHHHHHHHHHhcCcccCCCCchhHHHHhhhHHHHHHHhhcccccCChhhHHHhcC
Q psy12242 164 APMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLLGTADGWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKG 243 (498)
Q Consensus 164 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~l~~~~~ 243 (498)
..+++.|++|+++|++++++.+++.++|.++||+ +++++....+|++.|+..++..++.++..+++|+++.- +++
T Consensus 129 ~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~--l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 203 (1140)
T PRK06814 129 KYSILPDHLNKDELLGANALVEAGTFIAILLGTI--IGGLATISGNFVILVALLMGIAVLGWLASLFIPKTGNA---APD 203 (1140)
T ss_pred HHHhhHhhcCccccchhhHHHHHHHHHHHHHHHH--HHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCCCCC---CCC
Confidence 9999999999999999999999999999999999 44577778899999966666666666666667765311 000
Q ss_pred CHHHHHHHHHhhcCCchhHHHHHHHHHhHHhhhcCCCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHHh
Q psy12242 244 QELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFT 323 (498)
Q Consensus 244 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (498)
...+. ... ++ ....++.+.+++.++...+.....++ .......+.++++.+
T Consensus 204 ~~~~~--------------~~~---~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~p~~~~~ 254 (1140)
T PRK06814 204 LKIDR--------------NII---RS--------TITLLKYAKADKRIWLAILGISWFWL----VGAVVLSQLPLLAKE 254 (1140)
T ss_pred Ceecc--------------chH---HH--------HHHHHHHHhcCchHHHHHHHHHHHHH----HHHHHHHHhHHHHHH
Confidence 00000 000 00 01145556666654433222222222 222233344444556
Q ss_pred hcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHH--------------Hhhhhhh
Q psy12242 324 MAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQ--------------FVEIFVM 389 (498)
Q Consensus 324 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~ 389 (498)
.+|.++...+++.+..+++.++|.++.+++.|+..+++.+..+.++.++..+.+.+... .... ..
T Consensus 255 ~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~ 333 (1140)
T PRK06814 255 TLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSK-RH 333 (1140)
T ss_pred HcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcc-cc
Confidence 67999999999999999999999999999999887777666655555554443333100 0000 01
Q ss_pred HHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q psy12242 390 SIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESII 454 (498)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~ 454 (498)
.+.. .+..++.+.+.....+...+++.+..|++.+|+++|+.+.+..++..+++.+.+.+.+..
T Consensus 334 ~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~ 397 (1140)
T PRK06814 334 GWRI-LIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALG 397 (1140)
T ss_pred cHHH-HHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1112 222222233333344556778889999999999999999999999999999999987543
|
|
| >KOG2615|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.7e-27 Score=205.41 Aligned_cols=337 Identities=17% Similarity=0.136 Sum_probs=209.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcch
Q psy12242 85 VTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLA 164 (498)
Q Consensus 85 ~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~ 164 (498)
.....|.+.|.|++.+.+.++.+|.++||+|||+++++|++..++..++.+.+ .|+..+++.|++.|+..| .....
T Consensus 66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S---~~F~afv~aR~l~Gi~kg-nl~v~ 141 (451)
T KOG2615|consen 66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALS---RNFAAFVLARFLGGIFKG-NLSVI 141 (451)
T ss_pred cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhhccC-chHHH
Confidence 55667999999999999999999999999999999999999999999999999 999777778999999988 66778
Q ss_pred hhhhhccCcccchhhhHhHHHHHHHHHHHHHHHHhcCcccCC---CCchhHHHHh----hhHHHHH-HHhhcccccCChh
Q psy12242 165 PMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLLGT---ADGWPLLLAF----TLVPGIY-QMITLPFCPESPK 236 (498)
Q Consensus 165 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~---~~~wr~~f~~----~~~~~~~-~~~~~~~~~e~p~ 236 (498)
.++++|.+++|+|+++++.+...+++|.++||.++ +++.+ ..+ +++|.. ..+.... ...+.+++||+-+
T Consensus 142 rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIG--gyla~f~~~~g-~~p~alP~~~v~i~a~~~v~~~~~~lpETL~ 218 (451)
T KOG2615|consen 142 RAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIG--GYLAQFSSISG-SYPFALPCLLVFILAAGDVTFFPWFLPETLP 218 (451)
T ss_pred HHHHHhhcChhhccceeeeeehhhhcchhhcchhh--hHHHhhHhhhc-cCchHHHHHHHHHHHHHHHHHHHHhCCcccc
Confidence 99999999999999999999999999999999954 45544 111 122222 2222222 2344577899821
Q ss_pred hHHHhcCCHHHHHHHHHhhcCCchhHHHHHHHHHhHHhhhcCCCchhhhHhccccchhhHHHH--HHHHHHHHhhchHHH
Q psy12242 237 YILLSKGQELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFIS--MTVMVAQQLSGINAV 314 (498)
Q Consensus 237 ~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 314 (498)
++++.+....+++.. ++..+.++..+..-...+||+....++... +....+.....+...
T Consensus 219 -----~rk~~~~~~~~~~~~-------------~~~~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~ 280 (451)
T KOG2615|consen 219 -----LRKRNDEHSTLQEAA-------------DDRLALLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGL 280 (451)
T ss_pred -----chhhcccccchhhhh-------------hhhhhhcchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 111110000000000 000000000011112344444433321111 111111111112233
Q ss_pred HHhHHHH-HhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccC--CceehhhhhHHHHHHHHHHHHHHHHhhhhhhHH
Q psy12242 315 IYFSTKI-FTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISG--RKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSI 391 (498)
Q Consensus 315 ~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (498)
.++.+.+ .+.+|+++.+.|.+....++.+.+......+..+|.. .+-.+..+...+.-..+.+... ..+
T Consensus 281 ~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~-------~~~- 352 (451)
T KOG2615|consen 281 ENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLA-------RTP- 352 (451)
T ss_pred HhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhcc-------ccc-
Confidence 3333333 2567999999999988888777776666666666554 2222222222222222222221 111
Q ss_pred HHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q psy12242 392 FCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESII 454 (498)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~ 454 (498)
..+.+...+-.+.+....+....+.....|++.||+.+|+....+.++.++||.+.|.+....
T Consensus 353 ~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws 415 (451)
T KOG2615|consen 353 VVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWS 415 (451)
T ss_pred hhhhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEe
Confidence 122222222223333333556667788899999999999999999999999999998876644
|
|
| >KOG3764|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-26 Score=203.51 Aligned_cols=340 Identities=14% Similarity=0.047 Sum_probs=241.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcc
Q psy12242 84 QVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGL 163 (498)
Q Consensus 84 ~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~ 163 (498)
+..+++|++.+...+.+.+.+++.|.+.||+|+|..+++|++++..+++++++. ++++.+++.|.+||+|.+...+.
T Consensus 103 ~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg---~sy~~l~vAR~LQgvgsA~~~ts 179 (464)
T KOG3764|consen 103 RENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFG---NSYPMLFVARSLQGVGSAFADTS 179 (464)
T ss_pred ccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHc---chhHHHHHHHHHhhhhHHHHHhh
Confidence 334555999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred hhhhhhccCccc-chhhhHhHHHHHHHHHHHHHHHHhcCcccCCCCchhHHHHhhhHHHHHHHhhcccccCChhhHHHhc
Q psy12242 164 APMYLAEISPVH-LRGAVGTVYQLVITISIVISQILGLGGLLGTADGWPLLLAFTLVPGIYQMITLPFCPESPKYILLSK 242 (498)
Q Consensus 164 ~~~~i~~~~~~~-~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~l~~~~ 242 (498)
..++++|.+|++ +|++++|+...+.++|..+||+ .++.+.+..|.+.+|++.++++++-..+.+++-|+-+ .
T Consensus 180 glamlAd~f~~d~er~~vmGialgfislG~lvgPp--fGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~-----~ 252 (464)
T KOG3764|consen 180 GLAMLADVFPEDNERGSVMGIALGFISLGVLVGPP--FGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTE-----M 252 (464)
T ss_pred hHHHHHHHcccchhhhHHHHHHHHHHhccceecCC--cccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccc-----c
Confidence 999999999975 5799999999999999999999 7789999999999999999988888777666544311 0
Q ss_pred CCHHHHHHHHHhhcCCchhHHHHHHHHHhHHhhhcCCCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHH
Q psy12242 243 GQELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIF 322 (498)
Q Consensus 243 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (498)
+. +...+..++++++++|..+ .........+.+....--++.....
T Consensus 253 ~~------------------------------~~~~~~~~~~~Ll~dP~I~----~~agai~~~n~~lafLePtlslwm~ 298 (464)
T KOG3764|consen 253 DP------------------------------DSTEQGTPMWSLLMDPYIL----LIAGAITFSNSSLAFLEPTLSLWML 298 (464)
T ss_pred Cc------------------------------cccccCccHHHHHhCchHh----hhhcchhhccchHHHhCcccHHHHH
Confidence 00 0112334678888887432 2222222222111112223333445
Q ss_pred hhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCce--ehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q psy12242 323 TMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKT--LLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMF 400 (498)
Q Consensus 323 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (498)
+....+.-+.|..+....+...++..+.|.+.||++..+ ....+.+..........+.... ...+.....+.+.
T Consensus 299 e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~----~~L~vp~~~l~~~ 374 (464)
T KOG3764|consen 299 ETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSI----AQLWVPNFGLGFG 374 (464)
T ss_pred HhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhH----HHHhhhhHHHHHH
Confidence 666644448888999999999999999999999999433 3333333333333333332211 1112222222222
Q ss_pred HHHHhcCccchhhhhhcccCCCC---hhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh-HHHHHHHHHHHHHHHH
Q psy12242 401 VVFFAVGPGSIPWFLVSELFSQS---ARPLATSLAVSINWTANFIVGLGFLPIESIIHG-YVFTIFAVLQAMFVLF 472 (498)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~-~~~~~~~~~~~~~~~~ 472 (498)
+........|..... .|.-..+ .-|..+++......++.+++|.+.|.+.+..|. |...+.++..++-.-+
T Consensus 375 i~~~dasl~P~l~~l-vd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapv 449 (464)
T KOG3764|consen 375 IGLADASLIPTLGYL-VDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPV 449 (464)
T ss_pred HHHHHHHHhhhhHHh-cchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHH
Confidence 222333333433333 3433334 668899999999999999999999999999995 5666666666654433
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-25 Score=216.43 Aligned_cols=330 Identities=17% Similarity=0.130 Sum_probs=216.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHh----hccch-hhHHHHHHHHHHHHHHhhhhccc---hhHHHHHHHH
Q psy12242 80 IEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAER----FGRKG-GLLINNVFVVLAALLQGFSKAFS---SYEMIILGRF 151 (498)
Q Consensus 80 ~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr----~Grr~-~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~r~ 151 (498)
+++.+. |++.++..+..++..|+.|+++|| +|||| .++.+....+++.+++...+... ....+++.++
T Consensus 32 ~s~~~~----g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (437)
T TIGR00792 32 LSAAFV----GTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYI 107 (437)
T ss_pred CCHHHH----HHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHH
Confidence 677777 999999999999999999999997 68755 67778888888888877763211 2456777889
Q ss_pred HHHhhhhhhhcchhhhhhccC-cccchhhhHhHHHHHHHHHHHHHHHHhcC--ccc---CCCCchhHHHHhhhHHHHHHH
Q psy12242 152 LIGINSGLNAGLAPMYLAEIS-PVHLRGAVGTVYQLVITISIVISQILGLG--GLL---GTADGWPLLLAFTLVPGIYQM 225 (498)
Q Consensus 152 l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~i~~~--~~~---~~~~~wr~~f~~~~~~~~~~~ 225 (498)
+.+++.+...+...++..|.. ++++|++..++...+..+|.++++.+... ... .+..+||+.+.+.+++.++..
T Consensus 108 ~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~ 187 (437)
T TIGR00792 108 LLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSL 187 (437)
T ss_pred HHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHH
Confidence 999998888888888999988 46899999999988888887766543210 011 235689999988877766555
Q ss_pred h-hcccccCChhhHHHhcCCHHHHHHHHHhhcCCchhHHHHHHHHHhHHhhhcCCCchhhhHhccccchhhHHHHHHHHH
Q psy12242 226 I-TLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMV 304 (498)
Q Consensus 226 ~-~~~~~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (498)
+ ..+++||+++. +++++ +++.+.+..+++++++|.++...+..++...
T Consensus 188 ~~~~~~~~e~~~~----~~~~~---------------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 236 (437)
T TIGR00792 188 IICFFGTKERYSE----IPKNI---------------------------EKKLSLKQIFKALFKNDQLLILCLAYLFYNL 236 (437)
T ss_pred HHHHcCCEecCCC----CCccc---------------------------ccCCCHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4 34556775311 00000 0000111244566677654432222222221
Q ss_pred HHHhhchHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHh
Q psy12242 305 AQQLSGINAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFV 384 (498)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (498)
. ......+.+++.+...-++...+.......++.+++.++.+++.||+|+|+.+..+..+.+++.+.+.+..
T Consensus 237 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~--- 308 (437)
T TIGR00792 237 A-----FNIKNGVQVYYFTYVLGDPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAG--- 308 (437)
T ss_pred H-----HHHHcchhheeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcc---
Confidence 1 22222333444432212455666677777899999999999999999999998888777766655544321
Q ss_pred hhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCC-------CChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh
Q psy12242 385 EIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFS-------QSARPLATSLAVSINWTANFIVGLGFLPIESIIHG 456 (498)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~ 456 (498)
+ ..+.. .......++......+..+++.+|..+ ++.+|+..|+.+....++..+++.+.|.+.+..|+
T Consensus 309 ~---~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~ 383 (437)
T TIGR00792 309 S---NLPLI-LVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGY 383 (437)
T ss_pred h---hHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 1 11111 112222222222234566667777654 56679999999999999999999999999887653
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-25 Score=225.31 Aligned_cols=303 Identities=12% Similarity=0.094 Sum_probs=205.1
Q ss_pred HHHhhhhhccccccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q psy12242 34 SASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAER 113 (498)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr 113 (498)
+..++. .+......+.++..++.++++|+ ++..+. |++.+.+.++++++.++.|+++||
T Consensus 36 ~~~~~~-~~~~~~~~g~~~~~l~~iek~F~----------------lss~~~----G~i~s~~~i~~~~~~i~v~~~~~r 94 (633)
T TIGR00805 36 LLLTCA-QLQGLLYNGLVNSSLTTIERRFK----------------LSTSSS----GLINGSYEIGNLLLIIFVSYFGTK 94 (633)
T ss_pred HHHHHH-HHHHHHHHHHHHhhchhhhhhhC----------------CCCCcc----eeeeehhhHHHHHHHHHHHHhhcc
Confidence 333444 56666777888888999999998 788888 999999999999999999999999
Q ss_pred hccchhhHHHHHHHHHHHHHHhhhhc------------------------------------------------cchhHH
Q psy12242 114 FGRKGGLLINNVFVVLAALLQGFSKA------------------------------------------------FSSYEM 145 (498)
Q Consensus 114 ~Grr~~l~~~~~~~~~~~~~~~~~~~------------------------------------------------~~~~~~ 145 (498)
+|||+++.++.++++++++++++... ...+..
T Consensus 95 ~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (633)
T TIGR00805 95 LHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLL 174 (633)
T ss_pred cCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehh
Confidence 99999999999999999999987520 002566
Q ss_pred HHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHHHHHHHHHHHHHHHhcCcccCCC------------------
Q psy12242 146 IILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLLGTA------------------ 207 (498)
Q Consensus 146 ~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~------------------ 207 (498)
++++|+++|+|.+..++...+++.|++|+++|+++++++..+..+|.++|++++. .+.+.
T Consensus 175 ~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg--~l~~~~~d~~~~~~~~~~l~~~d 252 (633)
T TIGR00805 175 FLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGS--FCLQIYVDTGSVNTEDVILTPTD 252 (633)
T ss_pred hHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHH--HHHhcccccccCCCCCCCCCCCC
Confidence 7899999999999999999999999999999999999999999999999998542 22211
Q ss_pred ----CchhHHHHhhhHHHHHHHhhcccccCC-hhhHHHhcCCHHHHHHHHHhhcCCchhHHHHHHHHHhHHhhhcCCCch
Q psy12242 208 ----DGWPLLLAFTLVPGIYQMITLPFCPES-PKYILLSKGQELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIPKVS 282 (498)
Q Consensus 208 ----~~wr~~f~~~~~~~~~~~~~~~~~~e~-p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (498)
..||..|++.+++.++..+.++++|+. |+. ..+.+.++.++. ..... +. +...+ .....+.....
T Consensus 253 prWiGaWwl~Fli~g~l~~l~~v~l~~~p~~lp~~--~~~~~~~~~~~~--~~~~~-~~-~~~~~----~~~~~~~~~~~ 322 (633)
T TIGR00805 253 PRWIGAWWIGFLICGGVALLTSIPFFFFPKALPKE--GKRVNVDVHETE--KLEKS-ED-KSRKK----NSDITKDFPKI 322 (633)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCc--ccccchhhhhhh--ccccc-cc-ccchh----hhhhHHHHHHH
Confidence 127778888777766655555556654 211 000010000000 00000 00 00000 00000011224
Q ss_pred hhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHH-hhcCCCchhHHHHHHHHHH-HHHHHHHhhhhhhhccCC-
Q psy12242 283 LREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIF-TMAQLSDTAAQWATLGMGT-MNVVMTLVSLVLVEISGR- 359 (498)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~g~- 359 (498)
.+.++++|.++...+..... .. ....+..+.|.++ +.+|+++.+++++.....+ +.++|.+++|+++||+++
T Consensus 323 ~~~Ll~n~~f~~~~l~~~~~----~~-~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~ 397 (633)
T TIGR00805 323 IKRLLCNPIYMLVILAQVID----SL-AFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLN 397 (633)
T ss_pred HHHHHcCcHHHHHHHHHHHH----HH-HHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeeccc
Confidence 56788887544332222222 22 2334445555555 5689999999998877665 568999999999999984
Q ss_pred -ceehhhhhHHHHHHH
Q psy12242 360 -KTLLLIGFMGVFVVT 374 (498)
Q Consensus 360 -~~~~~~~~~~~~~~~ 374 (498)
|+.+..+.....++.
T Consensus 398 ~~~~~~~~~~~~~~~~ 413 (633)
T TIGR00805 398 VKKAAYFAICLSTLSY 413 (633)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 455555555544443
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.3e-24 Score=208.50 Aligned_cols=340 Identities=16% Similarity=0.116 Sum_probs=238.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhhccchhhHHHHHHHHHHHHHHhhhh--ccchhHHHHHHHHHHHhhhhhhhcchh
Q psy12242 88 IFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSK--AFSSYEMIILGRFLIGINSGLNAGLAP 165 (498)
Q Consensus 88 ~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~r~l~G~~~g~~~~~~~ 165 (498)
..+++..+..+...+.++++|.++||++|||+++.+.++..+..+..++.. ...+.+.+++.-++.|++.+...|+..
T Consensus 46 ~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~ 125 (524)
T PF05977_consen 46 MVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQ 125 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 349999999999999999999999999999999999988776655544321 124788899999999999999999999
Q ss_pred hhhhccCcccchhhhHhHHHHHHHHHHHHHHHHhcCcccCCCCchhHHHHhhhHHHHHHHhhcccccCChhhHHHhcCCH
Q psy12242 166 MYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLLGTADGWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQE 245 (498)
Q Consensus 166 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~l~~~~~~~ 245 (498)
+++.|..|+++...+.++.+...++..++||. +++.+....|-.+.|.+.++..++.++.....+.+++ +++..
T Consensus 126 A~ip~lV~~~~L~~A~al~s~~~niar~iGPa--lgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~----~~~~~ 199 (524)
T PF05977_consen 126 AIIPELVPKEDLPAANALNSISFNIARIIGPA--LGGILVAFFGAAAAFLINALSFLISILALLRWKPPPP----PSSLP 199 (524)
T ss_pred HHHHHhccHhhHHHHHHHHHHHHHHHHhccch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc----ccccc
Confidence 99999999999999999999999999999999 5556666677788888887766555544433332210 00000
Q ss_pred HHHHHHHHhhcCCchhHHHHHHHHHhHHhhhcCCCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHH-hh
Q psy12242 246 LEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIF-TM 324 (498)
Q Consensus 246 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 324 (498)
+| +. .+.-+..++-+.++|..+..++... .+.. . ........|.+. +.
T Consensus 200 ~e--~~------------------------~~~l~~G~ryv~~~~~l~~~l~~~~-~~~l---~-~~a~~aLlPl~a~~~ 248 (524)
T PF05977_consen 200 RE--RF------------------------FSALREGLRYVRSSPPLRSVLLRSF-LFNL---F-ASAVWALLPLFARDV 248 (524)
T ss_pred hh--hh------------------------hhhHHHHHHHHhcchHHHHHHHHHH-HHHH---h-hhHHHHhhhHHHHHH
Confidence 00 00 0001113344444443332222121 1111 1 122233445555 56
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q psy12242 325 AQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFF 404 (498)
Q Consensus 325 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (498)
+|.++...|++....+++.++|.++.+++.+|+++++.+..+.++.+++.+.+.+.. ..+.. ....+..+..
T Consensus 249 l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~-------~~~~~-~~~l~l~G~~ 320 (524)
T PF05977_consen 249 LGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSP-------SFWLA-LIALFLAGAA 320 (524)
T ss_pred hCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcch-------HHHHH-HHHHHHHHHH
Confidence 799999999999999999999999999999999999888888887777776666532 12222 2223333333
Q ss_pred hcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhH-HHHHHHHHHHHHHHH
Q psy12242 405 AVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIHGY-VFTIFAVLQAMFVLF 472 (498)
Q Consensus 405 ~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~~-~~~~~~~~~~~~~~~ 472 (498)
.........+...+..|++.||+++++..+....+..+|..+.|.+.+..|.. .+.+.+++.+++.++
T Consensus 321 ~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~ 389 (524)
T PF05977_consen 321 WIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALI 389 (524)
T ss_pred HHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 33344555667788999999999999999999999999999999999998864 444333333333333
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-24 Score=208.71 Aligned_cols=344 Identities=13% Similarity=0.079 Sum_probs=215.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhhHHHHHHHHHHHHHHh---hhhc--cchhHHHHHHHHHHH
Q psy12242 80 IEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQG---FSKA--FSSYEMIILGRFLIG 154 (498)
Q Consensus 80 ~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~r~l~G 154 (498)
.++.+. |++.+++.++..+++++.|+++||+|||+.++.+.....++..... +.+. .+.+..+++.|++.|
T Consensus 35 ~s~~~~----g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 110 (396)
T TIGR00882 35 LSKTDT----GIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLG 110 (396)
T ss_pred CCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 677777 9999999999999999999999999999999887776655443321 1100 022344567788899
Q ss_pred hhhhhhhcchhhhhhccCcccchhhhHhHHHHHHHHHHHHHHHHhcCcccCCCCchhHHHHhhhHHHHHHHhhccc-ccC
Q psy12242 155 INSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLLGTADGWPLLLAFTLVPGIYQMITLPF-CPE 233 (498)
Q Consensus 155 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e 233 (498)
++.+...+....+..|..+ +++..++......++|.++++++ ++.+. ..+||..|++.++..++..+..++ .||
T Consensus 111 ~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~--~g~l~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 185 (396)
T TIGR00882 111 FVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASI--AGILF-SIDPQIVFWLGSGFALILMLLLMFAKPK 185 (396)
T ss_pred HHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHH--Hhhhh-ccCchHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9888888888777777533 34566777788889999999985 34554 359999999987776665544433 344
Q ss_pred ChhhHHHhcCCHHHHHHHHHhhcCCchhHHHHHHHHHhHHhhhcCCCchhhhHhccccchhhHHHHHHHHHHHHhhchHH
Q psy12242 234 SPKYILLSKGQELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINA 313 (498)
Q Consensus 234 ~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (498)
+|+. ++.+++ .+.+.++.+..+.++++|++.++...+..+.... .+..
T Consensus 186 ~~~~-----~~~~~~----------------------~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~-----~~~~ 233 (396)
T TIGR00882 186 APSS-----ATVANA----------------------LGANASAFSLKLALELFRQRKFWMFVLYVVGVAC-----VYDV 233 (396)
T ss_pred Cchh-----hhhhcc----------------------cccccCCCCHHHHHHHHcCCcHHHHHHHHHHHHH-----HHHH
Confidence 3311 000000 0000011122356677888765433222221111 1122
Q ss_pred HHHhHHHHHhh----cCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhh
Q psy12242 314 VIYFSTKIFTM----AQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVM 389 (498)
Q Consensus 314 ~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (498)
...+.+.+.++ .+.+....+.......+...++.+..+++.||+++|+.+.++..+.++........ ..
T Consensus 234 ~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~-------~~ 306 (396)
T TIGR00882 234 FDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFA-------TT 306 (396)
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhc-------CC
Confidence 22222333222 24555667888888888889999999999999999999888777766655543321 11
Q ss_pred HHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHH-HHHHHHHHHHHHHHhHHHHHHhhhh-HHHHHHHHHHH
Q psy12242 390 SIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSL-AVSINWTANFIVGLGFLPIESIIHG-YVFTIFAVLQA 467 (498)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~-~~~~~~~~~~~~~~~~~~l~~~~g~-~~~~~~~~~~~ 467 (498)
.+..... ....+............+..+..|++.+++..+. .+....+|+.+++.+.|.+.|..|+ ..+.+.+++.+
T Consensus 307 ~~~~~~~-~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~ 385 (396)
T TIGR00882 307 ALEVVIL-KMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVL 385 (396)
T ss_pred hHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHH
Confidence 1112111 1222221111112333455677788888887766 5678889999999999999998886 45555555555
Q ss_pred HHHHH
Q psy12242 468 MFVLF 472 (498)
Q Consensus 468 ~~~~~ 472 (498)
+..++
T Consensus 386 i~~~~ 390 (396)
T TIGR00882 386 LFTLI 390 (396)
T ss_pred HHHHH
Confidence 54443
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.9e-25 Score=204.37 Aligned_cols=378 Identities=11% Similarity=0.097 Sum_probs=234.7
Q ss_pred HHHHHHHHHhhhhhccccccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhh-HHHHHHHHHHHHHHHHHHHHHh
Q psy12242 28 KLAFAISASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQ-VTMIFAVAVSIFCAGGIIGGAA 106 (498)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~s~~~~~~~~~~~~ 106 (498)
++...++++.++ |+..+-.+ .+.+.|.+.++++ +++.| . |.+.++++.+|++++++
T Consensus 25 W~~~~~~lC~fG--F~~e~R~n-~s~a~p~L~~elg----------------lT~~qv~----G~I~s~F~ysYal~qIp 81 (511)
T TIGR00806 25 WRVLVLYLCFYG--FMAQFRPG-ESFITPYLLTVLN----------------FTEETVT----NEIIPVLPYSHLAVLVP 81 (511)
T ss_pred hhHHHHHHHHHH--HHHHhhch-HHHHHHHHHHHcC----------------CCHHHhc----chHHHHHHHHHHHHHHH
Confidence 334444444444 44434333 5667788988888 88888 7 99999999999999999
Q ss_pred HHHHHHhhccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHHH
Q psy12242 107 TGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQL 186 (498)
Q Consensus 107 ~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~ 186 (498)
.|+++||+|.|+++.++.+.+++.+++.+++ +++..+.+.|++.|+++|... +...++..|+|+++|+++.++..+
T Consensus 82 ~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa---~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~s 157 (511)
T TIGR00806 82 VFLLTDYLRYKPVLVLQALSFVCVWLLLLLG---TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRA 157 (511)
T ss_pred HHHHHHHhCchHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcccCCCCchhHHHHh---hhHHHHHHHhhcccccCChhhHHHhcCCHHHHHHHHHhhcCCchhHH
Q psy12242 187 VITISIVISQILGLGGLLGTADGWPLLLAF---TLVPGIYQMITLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHD 263 (498)
Q Consensus 187 ~~~~g~~~~~~i~~~~~~~~~~~wr~~f~~---~~~~~~~~~~~~~~~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~ 263 (498)
+..+|.+++++++. . ....|||+.+.+ ......++++..+++|..++.+ .-+++++.......+.....+.+.
T Consensus 158 g~~vG~~Ia~~L~q--l-l~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~sl-~f~~~~~~~~~~~~~~~~~~~~~~ 233 (511)
T TIGR00806 158 AVLLGVFLSSVLGQ--L-LVTLGWISYSTLNIISLVFMTFSVFLALFLKRPKRSL-FFNRLEDVRGALPCELDQMVPGPG 233 (511)
T ss_pred HHHHHHHHHHHHHH--H-HHhcCchhHHHHHHHHHHHHHHHHHHHHhCCCCchhh-hhccccccccccccccccCCCCCc
Confidence 99999999999643 4 335689876644 4445555666678888766544 222211100000000000000000
Q ss_pred -HHHH-HHHhHHhhhcCCCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHHhhcCCC-chhHHHHHHHHH
Q psy12242 264 -EMDE-MRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTMAQLS-DTAAQWATLGMG 340 (498)
Q Consensus 264 -~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~ 340 (498)
+..+ .+......-..-...+++..+++... -..++.....+++..+..|...+-++..-+ +...|.+-.+..
T Consensus 234 ~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl-----~WSlWwa~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~t 308 (511)
T TIGR00806 234 GKLEDYLGTCRDSFLVRMLSELVTIYRNPQLL-----LWSLWWVFNSAGYYLITYYVHTLWGTLDESLNKYNGAVDAAST 308 (511)
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHhcCcchh-----hhhHHHHHHhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHH
Confidence 0000 00000000000112344455555332 223333444455677777777776655332 225566667777
Q ss_pred HHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccC
Q psy12242 341 TMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELF 420 (498)
Q Consensus 341 ~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (498)
+.+.+.++..|++-.+..+...+.++.+...-+.+++.. ... ...+..-+...++...+.... ++....+++..
T Consensus 309 llga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m--~~t---~~Iw~~Y~~yvlf~~~y~fli-tia~~~iA~~L 382 (511)
T TIGR00806 309 LLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWM--SQS---HDIWVLYVTYVLFRGIYQFLV-PIATFQIASSL 382 (511)
T ss_pred HHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhh--hcc---cchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHh
Confidence 788888889998855554333333332222222221111 111 223333333334444443332 45555555666
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHhH
Q psy12242 421 SQSARPLATSLAVSINWTANFIVGLGF 447 (498)
Q Consensus 421 p~~~~~~~~g~~~~~~~~~~~~~~~~~ 447 (498)
..+.-|...|+++.+.-+-..+...+.
T Consensus 383 ~~~~~aLvFGiNtfvAl~LQtilT~iV 409 (511)
T TIGR00806 383 SKELCALVFGINTFVATALKTIITAVV 409 (511)
T ss_pred cccceEEEEecHHHHHHHHHHheEEEE
Confidence 667678889988887766665555443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.9e-23 Score=182.17 Aligned_cols=340 Identities=15% Similarity=0.140 Sum_probs=258.9
Q ss_pred ccccccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhhH
Q psy12242 42 FQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLL 121 (498)
Q Consensus 42 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~ 121 (498)
+.-.-..+.+++.++.++++++ ++.+.. |+++++..+...+.+++..+++.|+|.++.+.
T Consensus 22 ~NLR~~itsvgPLL~~Ir~~~g----------------ls~s~a----GlLTtLPll~fg~~ap~a~~Lar~~g~er~l~ 81 (395)
T COG2807 22 FNLRPAITSVGPLLDEIRQDLG----------------LSFSVA----GLLTTLPLLAFGLFAPAAPRLARRFGEERSLF 81 (395)
T ss_pred hccchhhhhhhhhHHHHHHHhc----------------ccHHHH----HHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHH
Confidence 5555566667889999999999 888888 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHHHHHHHHHHHHHHHhcC
Q psy12242 122 INNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLG 201 (498)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~ 201 (498)
.++++.+++.++-.. .+...++.+-.+.|.|.+......+..+.+.|| |+-+..++++.+..++|..+++.+..
T Consensus 82 ~~Llli~~G~~iR~~----~~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lav- 155 (395)
T COG2807 82 LALLLIAAGILIRSL----GGLPLLFLGTLLAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAV- 155 (395)
T ss_pred HHHHHHHHHHHHHhc----ccHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhh-
Confidence 999999999999877 467788899999999999999999999999999 67799999999999999999988544
Q ss_pred cccCCCC-chhHHHHhhhHHHHHHHhhcccccCChhhHHHhcCCHHHHHHHHHhhcCCchhHHHHHHHHHhHHhhhcCCC
Q psy12242 202 GLLGTAD-GWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIPK 280 (498)
Q Consensus 202 ~~~~~~~-~wr~~f~~~~~~~~~~~~~~~~~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (498)
.+.++. +||....+.+++++++++.++.-. .|. + ....+.+.
T Consensus 156 -pla~~~~gW~~aL~~WAl~allAl~~WlPq~--~r~------~----------------------------~~~~~~~~ 198 (395)
T COG2807 156 -PLAQHSGGWRGALGFWALLALLALLIWLPQA--LRE------Q----------------------------AASIATKL 198 (395)
T ss_pred -HHHHhhccHHHHHHHHHHHHHHHHHHHhhhc--ccc------c----------------------------cccccccc
Confidence 444444 799999999999998887765321 110 0 00011122
Q ss_pred chhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccC-C
Q psy12242 281 VSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISG-R 359 (498)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g-~ 359 (498)
.+...++|+|.-|. ...++..+...++....+.|.++.+.|+|+.++|.+.....+..++.++....+.+|.. +
T Consensus 199 ~~~~~vw~~~~aW~-----vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~ 273 (395)
T COG2807 199 VSVRKVWRSPLAWQ-----VTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQ 273 (395)
T ss_pred ccccccccCchhHH-----HHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 23345677764442 23344444445667777888888899999999999999999999999999999999764 5
Q ss_pred ceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCC-CChhhHHHHHHHHHHHH
Q psy12242 360 KTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFS-QSARPLATSLAVSINWT 438 (498)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~g~~~~~~~~ 438 (498)
|+.......++.++.+.+.+.+.. ..+.. .+..+....+..|+....+.+..+ ++..+.-.|+.+.++++
T Consensus 274 r~~~~~~~~~~l~G~~G~~~~P~~-----~~~lw----~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYl 344 (395)
T COG2807 274 RPLVVLALLLMLVGLVGLLLAPGQ-----LPILW----ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYL 344 (395)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhh-----HHHHH----HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHH
Confidence 666666666666666666543221 12222 122333333445666666666544 45567889999999999
Q ss_pred HHHHHHHhHHHHHHhhhhHH
Q psy12242 439 ANFIVGLGFLPIESIIHGYV 458 (498)
Q Consensus 439 ~~~~~~~~~~~l~~~~g~~~ 458 (498)
-..++|.++|.+.|..|.+.
T Consensus 345 lAa~GP~l~G~lhDa~gsw~ 364 (395)
T COG2807 345 LAAFGPWLFGFLHDATGSWS 364 (395)
T ss_pred HHhhhhhhHhHHHHhcCChH
Confidence 99999999999999999653
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.8e-24 Score=209.93 Aligned_cols=353 Identities=14% Similarity=0.082 Sum_probs=212.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-hccchhhHHHHHHHHHHHHHHhhhhccchhH-HHHHHHHHHHhhh
Q psy12242 80 IEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAER-FGRKGGLLINNVFVVLAALLQGFSKAFSSYE-MIILGRFLIGINS 157 (498)
Q Consensus 80 ~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~l~G~~~ 157 (498)
.++.+. +++.+.+.....+..+++|+++|| +||||+++++.++++++++.++++ ++.. .++++|.++|+|.
T Consensus 47 ~~~~~a----~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~---~~~~~ll~~~~~l~~ig~ 119 (489)
T PRK10207 47 FSQEQA----FITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMS---LLKPDLIFIALGTIAVGN 119 (489)
T ss_pred CCHHHH----HHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHh---ccchhHHHHHHHHHHhcc
Confidence 677777 888899998888888999999999 999999999999999999999998 5544 4558999999999
Q ss_pred hhhhcchhhhhhccCccc--chhhhHhHHHHHHHHHHHHHHHHhcCcccCCCCchhHHHHhhhHHHHHHHhhcccccCCh
Q psy12242 158 GLNAGLAPMYLAEISPVH--LRGAVGTVYQLVITISIVISQILGLGGLLGTADGWPLLLAFTLVPGIYQMITLPFCPESP 235 (498)
Q Consensus 158 g~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p 235 (498)
|...+...+++.|.+|++ +|+++++++..+.++|..+||. +++++.++.|||+.|++.++..++.++.+.+.++..
T Consensus 120 g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~--l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~ 197 (489)
T PRK10207 120 GLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLS--LAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMV 197 (489)
T ss_pred ccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHH--HHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhh
Confidence 999999999999999877 4578999999999999999999 445788888999999987554443333333333221
Q ss_pred hhHH-HhcCCHHHHHHHH-------------HhhcCCchhHHHH-HH---HHH--hHHhhhcCCCchhhhHhccccchhh
Q psy12242 236 KYIL-LSKGQELEAQRAL-------------SWLRGTIEVHDEM-DE---MRA--EYESIKLIPKVSLREMFTNAQLRIP 295 (498)
Q Consensus 236 ~~l~-~~~~~~~~a~~~~-------------~~~~~~~~~~~~~-~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (498)
+... ..+++..+..... ....+........ .. ... -..++.+ . .+.+|++.+...
T Consensus 198 ~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~-~----~~~~r~r~~~~~ 272 (489)
T PRK10207 198 KDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIFFREAFK-L----DKTGRNKMFVAF 272 (489)
T ss_pred cccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhc-C----CHHHHHHHHHHH
Confidence 1000 0001001111100 0000000000000 00 000 0000000 0 133343322111
Q ss_pred HHHHHHHHHHHHhhchHHHHHhHHHHHhh-c-----CCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCcee-------
Q psy12242 296 LFISMTVMVAQQLSGINAVIYFSTKIFTM-A-----QLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTL------- 362 (498)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~------- 362 (498)
.+ +.........+....+..+.+.++ . |+.. ....+.....+..++..++.+++.||+++|+.
T Consensus 273 ~l---~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i-~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k 348 (489)
T PRK10207 273 VL---MLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSI-NPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMK 348 (489)
T ss_pred HH---HHHHHHHHHHHHHcccHHHHHHHHhccccccceEE-CHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 11 110111111122222223333331 2 2221 22344455556677788888999999998874
Q ss_pred hhhhhHHHHHHHHHHHHHHH-Hh-hhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHH
Q psy12242 363 LLIGFMGVFVVTVLLTIVMQ-FV-EIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTAN 440 (498)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~ 440 (498)
+.++.++.+++++.+..... .. .+...+...++...++.+.......+....++.+..|++.++.++|+.+....+|+
T Consensus 349 ~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~ 428 (489)
T PRK10207 349 FTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAF 428 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 66666666666554432111 11 11112223333444444555555667778888899999999999999999999999
Q ss_pred HHHHHhHHHH
Q psy12242 441 FIVGLGFLPI 450 (498)
Q Consensus 441 ~~~~~~~~~l 450 (498)
.++..+....
T Consensus 429 ~lg~~l~~~~ 438 (489)
T PRK10207 429 LLGGYVATFT 438 (489)
T ss_pred HHHHHHHHHh
Confidence 9998877544
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-23 Score=200.50 Aligned_cols=371 Identities=10% Similarity=-0.059 Sum_probs=230.2
Q ss_pred HHhhhhhccccccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHH--HHHHHHHHHHHHHhHHH-HH
Q psy12242 35 ASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVA--VSIFCAGGIIGGAATGY-VA 111 (498)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~s~~~~~~~~~~~~~g~-l~ 111 (498)
.+... ++..|...+...+.+|..-++.+ .+.+++ |++ .+++.+...+.+|+++. ..
T Consensus 5 ~~~~l-y~~~g~~~~~~~p~lp~~l~~~g----------------~~~~~i----Gl~~~~~l~~~~~~l~~p~~~~~~~ 63 (390)
T TIGR02718 5 TLGLL-YLSQGIPIGLAMDALPTLLREDG----------------APLTAL----AFLPLVGLPWVVKFLWAPLVDNWWS 63 (390)
T ss_pred HHHHH-HHHHHhHHHHHHHHHHHHHHHcC----------------CCHHHH----HHHHHHHHHHHHHHHHHHHHhcccc
Confidence 33444 56677777777777777777766 788888 886 46678888888888855 78
Q ss_pred HhhccchhhHHHHHHH-HHHHHHHh-hhhccchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHHHHHH
Q psy12242 112 ERFGRKGGLLINNVFV-VLAALLQG-FSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVIT 189 (498)
Q Consensus 112 dr~Grr~~l~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 189 (498)
||+||||.+++...+. .......+ +.+.......++..-++.++..+...+...++..|..++++++...+....+..
T Consensus 64 ~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~ 143 (390)
T TIGR02718 64 WRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVM 143 (390)
T ss_pred ccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHH
Confidence 9999999876655332 22222222 211112233445556667777777888888899999998888988888888889
Q ss_pred HHHHHHHHHhcCcccCCCCchhHHHHhhhHHHHHHHhhcccccCChhhHHHhcCCHHHHHHHHHhhcCCchhHHHHHHHH
Q psy12242 190 ISIVISQILGLGGLLGTADGWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDEMDEMR 269 (498)
Q Consensus 190 ~g~~~~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 269 (498)
+|.++++. ..+.+.+..+||..|++.++..++..+..++++|+++ ++++.+
T Consensus 144 lG~~~g~~--~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~----~~~~~~----------------------- 194 (390)
T TIGR02718 144 IGFFGGGA--GTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDRAV----ASPEAP----------------------- 194 (390)
T ss_pred HHHHHHHH--HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCCc----Cccccc-----------------------
Confidence 99999987 3346667789999999988777665555444444321 000000
Q ss_pred HhHHhhhcCCCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHHhhcCCCchhHHHHHHHHHH-HHHHHHH
Q psy12242 270 AEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTMAQLSDTAAQWATLGMGT-MNVVMTL 348 (498)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~ 348 (498)
+++..+.++.+|+|..+......+.... ....... +.+.+.++.|+++.+.+......+. ..+++.+
T Consensus 195 -------~~~~~~~~~~l~~~~~~~~~~~~~l~~~----~~~~~~~-~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~ 262 (390)
T TIGR02718 195 -------LARRASLFRFFRRPLAWSLLALALLSAM----TAVSGFG-LSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCG 262 (390)
T ss_pred -------hhhHHHHHHHHcCcCHHHHHHHHHHHHH----HHHHHHH-HhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHH
Confidence 0011245667777755433222222221 1122223 3445556689999999998877764 6677889
Q ss_pred hhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCC-ChhhH
Q psy12242 349 VSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQ-SARPL 427 (498)
Q Consensus 349 ~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~ 427 (498)
+.|++.||+|+|+.+..+..+.++..+.......... ......+.....+.........+.......+..++ +.+++
T Consensus 263 ~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~ 340 (390)
T TIGR02718 263 GGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWL--APGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGT 340 (390)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHccc--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHH
Confidence 9999999999999887766554333222221111000 01111111111111111111123334444455554 88999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhhhh-HHHHHHHHHHHHH
Q psy12242 428 ATSLAVSINWTANFIVGLGFLPIESIIHG-YVFTIFAVLQAMF 469 (498)
Q Consensus 428 ~~g~~~~~~~~~~~~~~~~~~~l~~~~g~-~~~~~~~~~~~~~ 469 (498)
.+++.+...+++..++|.+.|.+.|..|+ ..+...+++.+++
T Consensus 341 ~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a 383 (390)
T TIGR02718 341 DVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLA 383 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 99999999999999999999999998886 4444444444443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.5e-23 Score=200.43 Aligned_cols=382 Identities=13% Similarity=0.079 Sum_probs=230.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-hccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhh
Q psy12242 80 IEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAER-FGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSG 158 (498)
Q Consensus 80 ~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g 158 (498)
.++.+. |++.+.+.++..++++++|+++|| +|||+++.++.++.+++.++.+++ ++++.+++.|++.|++.|
T Consensus 45 ~s~~~a----g~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~---~~~~~~~~~~~l~g~g~g 117 (475)
T TIGR00924 45 FSQEQA----FIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMS---IYPDLIFYGLGTIAVGSG 117 (475)
T ss_pred CCHHHH----HHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhc---ccHhHHHHHHHHHHhccc
Confidence 677777 999999999999999999999999 899999999999999999999988 888889999999999999
Q ss_pred hhhcchhhhhhccCcccc---hhhhHhHHHHHHHHHHHHHHHHhcCcccCCCCchhHHHHhhhHHHHHHHhhccccc---
Q psy12242 159 LNAGLAPMYLAEISPVHL---RGAVGTVYQLVITISIVISQILGLGGLLGTADGWPLLLAFTLVPGIYQMITLPFCP--- 232 (498)
Q Consensus 159 ~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~--- 232 (498)
...+...++++|++|+++ |++++++++.+.++|.++||++ .+.+.++.+||+.|.+.++..++..+.+.+.+
T Consensus 118 ~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l--~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~ 195 (475)
T TIGR00924 118 LFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLL--AGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHML 195 (475)
T ss_pred cccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHH--HHHHHHhcChHHHHHHHHHHHHHHHHHHHHccccc
Confidence 999999999999998754 8889999999999999999995 44777778999999987765554443333322
Q ss_pred -CChhhHHHhcCCHHHHHHHHHh---------------hcCCchhHHHHHH---H--HHhHHhhhcCCCchhhhHhcccc
Q psy12242 233 -ESPKYILLSKGQELEAQRALSW---------------LRGTIEVHDEMDE---M--RAEYESIKLIPKVSLREMFTNAQ 291 (498)
Q Consensus 233 -e~p~~l~~~~~~~~~a~~~~~~---------------~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~ 291 (498)
+.|+. .++.++++.+..... ...+......... . -........+++ ..+.-+++
T Consensus 196 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~- 270 (475)
T TIGR00924 196 RDIGSV--PDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVIIFFFRLAFKPR--LDAVARNK- 270 (475)
T ss_pred ccCCCC--CCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhcc--CCHHHHhH-
Confidence 22210 000011110000000 0000000000000 0 000000000000 00011111
Q ss_pred chhhHHHHHHHHHHHHhhchHHHHHhHHHHH-hhcCCCc----hhHHHHHHHHHHHHHHHHHhhhhhhhccCC-----ce
Q psy12242 292 LRIPLFISMTVMVAQQLSGINAVIYFSTKIF-TMAQLSD----TAAQWATLGMGTMNVVMTLVSLVLVEISGR-----KT 361 (498)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~----~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~-----~~ 361 (498)
.. .++..+....... ..+.......+.+. ++.+.+. ...+++.+...+..++..++..++..|.+| +.
T Consensus 271 ~~-~~l~l~~~~~~~~-~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~ 348 (475)
T TIGR00924 271 MY-AYIVLFLEAVVFW-VLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTT 348 (475)
T ss_pred HH-HHHHHHHHHHHHH-HHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence 11 1111111111111 11222222222222 3223221 125677777877777777665544334433 23
Q ss_pred eh--hhhhHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHH
Q psy12242 362 LL--LIGFMGVFVVTVLLTIVMQFVEI-FVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWT 438 (498)
Q Consensus 362 ~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~ 438 (498)
.. .++.++.++++..+.+.....+. ...+....+...++.........|...++..+..|++.||+.+|+......+
T Consensus 349 ~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~ 428 (475)
T TIGR00924 349 PLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAM 428 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 23 55666666666665543221111 0123334444455555566666788899999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHhc
Q psy12242 439 ANFIVGLGFLPIESIIHG-YVFTIFAVLQAMFVLFIYKKV 477 (498)
Q Consensus 439 ~~~~~~~~~~~l~~~~g~-~~~~~~~~~~~~~~~~~~~~~ 477 (498)
|..+++.+.....+..++ ..+...++++++..++.++..
T Consensus 429 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (475)
T TIGR00924 429 GSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMV 468 (475)
T ss_pred HHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 999998888876665544 344555555555544444433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-22 Score=194.38 Aligned_cols=367 Identities=13% Similarity=0.133 Sum_probs=223.7
Q ss_pred ccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhhHHHHHHH
Q psy12242 48 TGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFV 127 (498)
Q Consensus 48 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~ 127 (498)
....+..++.+..|++ -+ ++. .|+.+.+.++.+++.++.|+++|.||||.+++.+.++.
T Consensus 60 ~~~~a~~l~~I~~diG----------------~~-~~~----~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~ 118 (599)
T PF06609_consen 60 LVLPASILPYINADIG----------------GS-DNW----SWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLG 118 (599)
T ss_pred HhccHHHHHHHHHhcC----------------CC-ccc----hHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHH
Confidence 3334556688888877 22 333 79999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHHHHHHHHHHHHHHHhcCcccCCC
Q psy12242 128 VLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLLGTA 207 (498)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 207 (498)
.+|+++++.+ +|...++++-.+.|+|.|.... ....++|..|.|.|+...++...........++.++ ..+..+
T Consensus 119 vvG~Iv~atA---~~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia--~~~~~~ 192 (599)
T PF06609_consen 119 VVGSIVCATA---QNMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIA--QLFAAH 192 (599)
T ss_pred HhHHHHhhcC---CcHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHH--HHhccC
Confidence 9999999999 9999999999999999876664 455689999999998877776665555554566633 234456
Q ss_pred CchhHHHHhhhHHHHHHHhhcccccCChhhHHHhcCC---HHHHHHHHHhhcC------------------C--c-hhH-
Q psy12242 208 DGWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQ---ELEAQRALSWLRG------------------T--I-EVH- 262 (498)
Q Consensus 208 ~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~l~~~~~~---~~~a~~~~~~~~~------------------~--~-~~~- 262 (498)
.+|||.|++.++...+.++..++.-.+|++- ..+++ ..+..+.+|.+.. . . ..+
T Consensus 193 ~~WRw~~~~~~i~~~i~~vl~~~fY~PP~~~-~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa 271 (599)
T PF06609_consen 193 SGWRWIFYIFIIWSGIALVLIFFFYFPPPRA-QLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSA 271 (599)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHhCCCchh-hhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCc
Confidence 7999999998777666554332221222221 11121 2222222332210 0 0 000
Q ss_pred HHHHHHH---------HhHHhh-hcCCCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHHhhcCCCch--
Q psy12242 263 DEMDEMR---------AEYESI-KLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTMAQLSDT-- 330 (498)
Q Consensus 263 ~~~~~~~---------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-- 330 (498)
....-+- --.|.. +.+++.-..+++|+++ .+...+...+......+....+|+......++.++.
T Consensus 272 ~VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r---~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~ 348 (599)
T PF06609_consen 272 HVIAPLVIGFVLLVAFVVWEWFGAPKDPLFPHRLFKDRR---GFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISI 348 (599)
T ss_pred cchhhHHHHHHHHHHHHHhhhhccCCCCcCCHHHhccch---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCccc
Confidence 0000000 000111 1112223346676642 222222233333333344445666655555655543
Q ss_pred -hHHHHHHHHHHHHHHHHHhhhhhhhccCCceeh-hhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCc
Q psy12242 331 -AAQWATLGMGTMNVVMTLVSLVLVEISGRKTLL-LIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGP 408 (498)
Q Consensus 331 -~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (498)
..++.....+.+..+|.++.+.+..+++|-|.. +++...+.+.+..+... .. ++....+.. ..+.++.....
T Consensus 349 ~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~-~~-~n~~~~i~~----~~l~g~giG~~ 422 (599)
T PF06609_consen 349 TEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAV-RP-DNKNAAIAF----LVLAGFGIGGI 422 (599)
T ss_pred ceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHc-cC-CCcchHHHH----HHHHHHhHHHH
Confidence 567777888888899999999999988875554 45555554433333322 11 111111111 11111111122
Q ss_pred cchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy12242 409 GSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIE 451 (498)
Q Consensus 409 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~ 451 (498)
.......+.-..|++..+++.|+..+++.+|+.++..++..+.
T Consensus 423 ~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~ 465 (599)
T PF06609_consen 423 LVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIF 465 (599)
T ss_pred HHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 2333445556679999999999999999999999988875543
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-21 Score=191.08 Aligned_cols=390 Identities=11% Similarity=0.024 Sum_probs=232.7
Q ss_pred CCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhhHHHHHHHHHHH
Q psy12242 52 NAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAA 131 (498)
Q Consensus 52 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~ 131 (498)
+...+.++++++ +++.+. +++.++. ....+++++.|++.||+|||+++.++.+++.++.
T Consensus 47 sv~s~~L~~~lg----------------ls~~~l----~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ 105 (591)
T PTZ00207 47 NLISGAMQARYN----------------LTQRDL----STITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGT 105 (591)
T ss_pred HHHHHHHHHHhC----------------cCHHHH----HHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 445678888888 888888 7777663 3455678889999999999999999999999999
Q ss_pred HHHhhhhc---cchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHHHHHHHHHHHHHHHhcCcccCCCC
Q psy12242 132 LLQGFSKA---FSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLLGTAD 208 (498)
Q Consensus 132 ~~~~~~~~---~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~ 208 (498)
++++++.. .++++.+++.|++.|+|.+...+.+...+.+|+| ++||++.++...+.++|.++.+.+.. .+.. .
T Consensus 106 ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~-~l~~--~ 181 (591)
T PTZ00207 106 LLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQL-AFFS--D 181 (591)
T ss_pred HHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHH-HHHH--H
Confidence 99998621 1479999999999999999999999999999997 78999999999999999986554322 2332 4
Q ss_pred chhHHHHhhhHHHHHHH-hhcccc--cCChhhHHHhcCCHHHHHHHHHhhcCC---------------------------
Q psy12242 209 GWPLLLAFTLVPGIYQM-ITLPFC--PESPKYILLSKGQELEAQRALSWLRGT--------------------------- 258 (498)
Q Consensus 209 ~wr~~f~~~~~~~~~~~-~~~~~~--~e~p~~l~~~~~~~~~a~~~~~~~~~~--------------------------- 258 (498)
+|+..|++.++..++.. +...++ |++|++. .++++.+++++..++.+..
T Consensus 182 ~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~-~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~ 260 (591)
T PTZ00207 182 NTSAYFFFLMSFALVVGILAIVFMRLPPFHLTG-YQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLP 260 (591)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhheeCCcchhhc-ccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHH
Confidence 68888877766555544 333444 4444432 2222212222221110000
Q ss_pred ------------chh--------------------------------HHHHHHHH--H-h----HHhh-------h---c
Q psy12242 259 ------------IEV--------------------------------HDEMDEMR--A-E----YESI-------K---L 277 (498)
Q Consensus 259 ------------~~~--------------------------------~~~~~~~~--~-~----~~~~-------~---~ 277 (498)
... +++.++.+ + . .++. + +
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P 340 (591)
T PTZ00207 261 LQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYIAP 340 (591)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccccCCCC
Confidence 000 00000000 0 0 0000 0 0
Q ss_pred CCCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHHhhc-CCCchh--HHHHHHHHHHHHHHHHHhhhhhh
Q psy12242 278 IPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTMA-QLSDTA--AQWATLGMGTMNVVMTLVSLVLV 354 (498)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~--~~~~~~~~~~~~~~~~~~~g~l~ 354 (498)
+...++++.+++..+| +.+...++ ..........-.-++.+.. |.+... ...+.+..++.+.+|++..|++.
T Consensus 341 ~~~~t~~q~l~~~d~W----ll~~~~~c-g~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~ 415 (591)
T PTZ00207 341 QFQETFIEGLKTARLW----CLLWSIFC-CVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFE 415 (591)
T ss_pred CCcchHHHHHhchhHH----HHHHHHHH-hhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHH
Confidence 0011444444444343 22222222 2222233444455666777 663322 22367888999999999999887
Q ss_pred hccCCce----e----hhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhh
Q psy12242 355 EISGRKT----L----LLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARP 426 (498)
Q Consensus 355 dr~g~~~----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 426 (498)
....+|+ + ......++.++.+++... .+...+.+..++.+.......++....++|++. ++-|
T Consensus 416 ~~~~~~~~~~r~prt~~l~~~~~~~~~~lll~~~--------~p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g 486 (591)
T PTZ00207 416 IWSQKRRAEDRVPITIALFIPSVCIITMLTLFLT--------LPKAALPLPYFIAAFANGFMAATIALVTRTIFA-KDPA 486 (591)
T ss_pred HHHHhhccccccchhHHHHHHHHHHHHHHHHHHH--------CCccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchH
Confidence 3322222 1 111111233333333332 110122222333333333344677778899999 8888
Q ss_pred HHHHHHHHHHHHHHHHH-HHhHHHHHHhhh--------------hHHHHHHHHHHHHHHHHHHHhccCCC
Q psy12242 427 LATSLAVSINWTANFIV-GLGFLPIESIIH--------------GYVFTIFAVLQAMFVLFIYKKVPETK 481 (498)
Q Consensus 427 ~~~g~~~~~~~~~~~~~-~~~~~~l~~~~g--------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (498)
+-+-+.....-+|+.+. ..++|.++|.-. ..++.+.+++++++.+......-+++
T Consensus 487 ~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~r 556 (591)
T PTZ00207 487 KHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQYR 556 (591)
T ss_pred HHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeehH
Confidence 88877777777777776 567788887532 13788888888888777665544444
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.6e-22 Score=193.31 Aligned_cols=350 Identities=12% Similarity=0.072 Sum_probs=199.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-hccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhh
Q psy12242 80 IEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAER-FGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSG 158 (498)
Q Consensus 80 ~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g 158 (498)
.++.+. +++.+.+........+++|+++|| +|||+.++.+.++.+++..++++++ ++.+.++++|+++|++.|
T Consensus 54 ~s~~~a----~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~--~~~~~l~~~~~l~gig~g 127 (500)
T PRK09584 54 MSEADS----ITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSG--HDAGIVYMGMATIAVGNG 127 (500)
T ss_pred CCHHHH----HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHhhh
Confidence 677776 677777766666666799999999 5999999999999999999998872 356677788999999999
Q ss_pred hhhcchhhhhhccCcccc--hhhhHhHHHHHHHHHHHHHHHHhcCcccCCCCchhHHHHhhhHHHHHHHhhc----cccc
Q psy12242 159 LNAGLAPMYLAEISPVHL--RGAVGTVYQLVITISIVISQILGLGGLLGTADGWPLLLAFTLVPGIYQMITL----PFCP 232 (498)
Q Consensus 159 ~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~----~~~~ 232 (498)
...+...+++.|++|+++ |..++++++.+.++|..++|.+ .+++.++.|||+.|++.++..++.++.+ .+++
T Consensus 128 ~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i--~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~ 205 (500)
T PRK09584 128 LFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLA--TPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVK 205 (500)
T ss_pred cccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHH--HHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhc
Confidence 999999999999998643 4568899999999999999994 4577778899999998775444433222 2233
Q ss_pred CChhhHHHhcCCHHHHHHHH-----------Hh-hcCCchhHHHHHHH---HHhHHhhhcCCCchhhhHhccccchhhHH
Q psy12242 233 ESPKYILLSKGQELEAQRAL-----------SW-LRGTIEVHDEMDEM---RAEYESIKLIPKVSLREMFTNAQLRIPLF 297 (498)
Q Consensus 233 e~p~~l~~~~~~~~~a~~~~-----------~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (498)
|.++. .++++.+...... .. .....+........ .......+... ...+. .+++.+
T Consensus 206 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~ 276 (500)
T PRK09584 206 QYGSK--PDFEPINYRKLLLTIVGVVALIAIATWLLHNQEIARMALGVVALGIVVIFGKEAF--AMKGA-----ARRKMI 276 (500)
T ss_pred cCCCC--CCccccchhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHh--hcCHH-----HHHHHH
Confidence 32100 0000011000000 00 00000000000000 00000000000 00001 111222
Q ss_pred HHHHHHHHHHhhchHHHHHhHHHHH----hhc-----CCCchhHHHHHHHHHHHHHHHHHhhhh----hhhccCCceehh
Q psy12242 298 ISMTVMVAQQLSGINAVIYFSTKIF----TMA-----QLSDTAAQWATLGMGTMNVVMTLVSLV----LVEISGRKTLLL 364 (498)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~g~----l~dr~g~~~~~~ 364 (498)
..+..... ....+.........+. ++. |+. ...+.+.....+..++..++..+ +.||.+..+.+.
T Consensus 277 ~~~~~~~~-~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~-i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~ 354 (500)
T PRK09584 277 VAFILMLE-AIIFFVLYSQMPTSLNFFAIRNVEHSILGIA-VEPEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFA 354 (500)
T ss_pred HHHHHHHH-HHHHHHHHHHhccHHHHHHHHhccccccceE-ECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHH
Confidence 22221111 1111111111111111 111 111 12455666666666666666644 444444455667
Q ss_pred hhhHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHH
Q psy12242 365 IGFMGVFVVTVLLTIVMQFVEI-FVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIV 443 (498)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~ 443 (498)
++.++.+++.+.+.......+. ...+....+....+.+.......|....++.+..|++.||+.+|+......++..++
T Consensus 355 ~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~ 434 (500)
T PRK09584 355 IGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIA 434 (500)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888877776654332110 011122344444555555666678888899999999999999998776666666666
Q ss_pred HHhHH
Q psy12242 444 GLGFL 448 (498)
Q Consensus 444 ~~~~~ 448 (498)
..+.+
T Consensus 435 g~~~~ 439 (500)
T PRK09584 435 GYVAN 439 (500)
T ss_pred HHHHH
Confidence 66554
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=3e-20 Score=177.74 Aligned_cols=372 Identities=16% Similarity=0.162 Sum_probs=231.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHH----hhccchhhHHH-HHHHHHHHHHHhhhhccchh-----------
Q psy12242 80 IEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAE----RFGRKGGLLIN-NVFVVLAALLQGFSKAFSSY----------- 143 (498)
Q Consensus 80 ~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~d----r~Grr~~l~~~-~~~~~~~~~~~~~~~~~~~~----------- 143 (498)
.++... +++..+..+...+.+|+.|+++| |+||||.++++ .....++.++.+++ ++.
T Consensus 36 ~~~~~~----~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~---~~~~~~~~~~~~~~ 108 (477)
T TIGR01301 36 IPHAWA----SIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFA---ADIGHLFGDNLDKK 108 (477)
T ss_pred CCHHHH----HHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhC---chhhhhcccccccc
Confidence 677777 99999999999999999999999 59999988775 55666666666666 443
Q ss_pred ------HHHHHHHHHHHhhhhhhhcchhhhhhccCcccch--hhhHhHHHHHHHHHHHHHHHHhcCc-------ccCCC-
Q psy12242 144 ------EMIILGRFLIGINSGLNAGLAPMYLAEISPVHLR--GAVGTVYQLVITISIVISQILGLGG-------LLGTA- 207 (498)
Q Consensus 144 ------~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~g~~~~~~i~~~~-------~~~~~- 207 (498)
+.++++-.+..++.....+...++++|.+|+++| +.+.++.+.+.++|.++|+.++... +....
T Consensus 109 ~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~ 188 (477)
T TIGR01301 109 TKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEA 188 (477)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccc
Confidence 2333344455568888888899999999998865 5799999999999999999854211 00000
Q ss_pred -----CchhHHHHhhhHHHHHHH-hhcccccCChhhHHHhcCCHHHHHHHHHhhcCCchhHHHHHHHHHhHHhhhcCCCc
Q psy12242 208 -----DGWPLLLAFTLVPGIYQM-ITLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIPKV 281 (498)
Q Consensus 208 -----~~wr~~f~~~~~~~~~~~-~~~~~~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (498)
.+.|..|++.++..++.. +..+..+|.|.. ++++.++ + +.+ +.++.....
T Consensus 189 ~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~---~~~~~~~--~---~~~----------------~~~~~~~~~ 244 (477)
T TIGR01301 189 CGVSCANLKSCFLIDIILLAILTYIALSAVKENPLI---GSDDFIN--S---EAA----------------PPSKHGEEA 244 (477)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCC---ccccchh--h---hcc----------------cccccchhh
Confidence 257899999877666655 445668887621 1111000 0 000 000000111
Q ss_pred hhhhHhcc-ccchhhHHHHHHHHHHHHhhchHHHHHhHHHHHhh-cCCCch------h----HHHHHHHHHHHHHHHHHh
Q psy12242 282 SLREMFTN-AQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTM-AQLSDT------A----AQWATLGMGTMNVVMTLV 349 (498)
Q Consensus 282 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~------~----~~~~~~~~~~~~~~~~~~ 349 (498)
.++++++. +...+.+...+...++.-+..+....|..+++-++ ++-++. + ..+.....++...+.+++
T Consensus 245 ~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~ 324 (477)
T TIGR01301 245 FFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIG 324 (477)
T ss_pred hHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333332 11122333333344433333333444444444432 332221 1 123345556666677778
Q ss_pred hhhhhhccCC-ceehhhhhHHHHHHHHHHHHHHHHhhh------------h-hhHHHHHHHHHHHHHHHhcCccchhhhh
Q psy12242 350 SLVLVEISGR-KTLLLIGFMGVFVVTVLLTIVMQFVEI------------F-VMSIFCIILVIMFVVFFAVGPGSIPWFL 415 (498)
Q Consensus 350 ~g~l~dr~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (498)
..++.+|+|+ |.....+.++.++++....+.....++ + .......+..+...++.......+++++
T Consensus 325 l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal 404 (477)
T TIGR01301 325 MEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFAL 404 (477)
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHH
Confidence 8889999985 566677877777777776654331110 0 0001222333334444444455788899
Q ss_pred hcccCCC--ChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHhccCCCC
Q psy12242 416 VSELFSQ--SARPLATSLAVSINWTANFIVGLGFLPIESIIHG---YVFTIFAVLQAMFVLFIYKKVPETKN 482 (498)
Q Consensus 416 ~~~~~p~--~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (498)
+++..|+ +..|..+|+.|.+..+.+.+.....|.+.+..|. ..+.+.++..++++++.++.+|+++.
T Consensus 405 ~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~ 476 (477)
T TIGR01301 405 ASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV 476 (477)
T ss_pred HHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 9998884 4559999999999999999999988887777763 45566666677777777777887653
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.2e-20 Score=174.81 Aligned_cols=351 Identities=17% Similarity=0.166 Sum_probs=228.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc-cchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhh
Q psy12242 80 IEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFG-RKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSG 158 (498)
Q Consensus 80 ~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G-rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g 158 (498)
.+..|+ |.+.++..+...++++++|.++||++ +||.+.+..++.++........ ++++.+++.-++..+...
T Consensus 34 ~s~~qI----G~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~---~~f~~~~~~~~l~~~~~~ 106 (400)
T PF03825_consen 34 FSGTQI----GILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFS---SSFWWLFVIMLLFSFFFS 106 (400)
T ss_pred CCHHHH----HHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHc
Confidence 577777 99999999999999999999999986 4777777777777766666666 888888888888888888
Q ss_pred hhhcchhhhhhccCcccchhhhHhHHHHHHHHHHHHHHHHhcCcccC---CCCchhHHHHhhhHHHHHHHhhcccccCCh
Q psy12242 159 LNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLLG---TADGWPLLLAFTLVPGIYQMITLPFCPESP 235 (498)
Q Consensus 159 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~---~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p 235 (498)
...|...++..+... +++.-.|-.....++|.+++.... ..... +..+....+++.+...++.....+.+|+.|
T Consensus 107 p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l~lp~~~ 183 (400)
T PF03825_consen 107 PTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAF-GGLLGGYLGISGTSLIFYIAAILSLLLAGFALFLPKTP 183 (400)
T ss_pred cHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHH-HHHHHhhhccccccHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 888888888888876 334555666666677766664320 01111 112223455555555544444455677765
Q ss_pred hhHHHhcCCHHHHHHHHHhhcCCchhHHHHHHHHHhHHhhhcCCCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHH
Q psy12242 236 KYILLSKGQELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVI 315 (498)
Q Consensus 236 ~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (498)
+. +++++ +.++....+..+++|+|+...-++..+.... ......
T Consensus 184 ~~---~~~~~----------------------------~~~~~~~~~~~~llk~~~~~~Fll~~~l~~~-----~~~~~~ 227 (400)
T PF03825_consen 184 PK---RSAKE----------------------------SVKKLLGLDALKLLKNPRFLVFLLAAFLIGI-----SHAAYY 227 (400)
T ss_pred cc---cccCC----------------------------CcccccchHHHHHhcCccHHHHHHHHHHHHH-----HHHHHH
Confidence 21 00000 0011112234578888865432222222222 234455
Q ss_pred HhHHHHHhhcC-CCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q psy12242 316 YFSTKIFTMAQ-LSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCI 394 (498)
Q Consensus 316 ~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (498)
.+.+.+.++.| .+....+...++..+.+++.-...+++.+|+|.++++.++....++-..++..... +.+..+...
T Consensus 228 ~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~---~~~~~~~~~ 304 (400)
T PF03825_consen 228 TFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSD---PWPFIVALQ 304 (400)
T ss_pred HHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcC---CcHHHHHHH
Confidence 56666677777 77777888888888999999999999999999999999999888888777665311 001111111
Q ss_pred HH-HHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHH-HHHHHHHHHhHHHHHHhhhhH-------HHHHHHHH
Q psy12242 395 IL-VIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSIN-WTANFIVGLGFLPIESIIHGY-------VFTIFAVL 465 (498)
Q Consensus 395 ~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~-~~~~~~~~~~~~~l~~~~g~~-------~~~~~~~~ 465 (498)
.+ ..+.+..++. .......++.+..|++.|+++.++.+... .+|..++..+.|++.|..+.. .+.+.+++
T Consensus 305 ~l~q~lhG~tf~~-~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~ 383 (400)
T PF03825_consen 305 LLGQLLHGLTFGL-FHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVM 383 (400)
T ss_pred HHHHhhhhHHHHH-HHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH
Confidence 11 0112222222 22455668899999999999999988764 589999999999999987732 23344444
Q ss_pred HHHHHHHHHHhccCC
Q psy12242 466 QAMFVLFIYKKVPET 480 (498)
Q Consensus 466 ~~~~~~~~~~~~~~~ 480 (498)
.++..++.+++.||+
T Consensus 384 ~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 384 ALVILVLFVILFKPK 398 (400)
T ss_pred HHHHHHHHHhhccCC
Confidence 445555555555554
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-20 Score=183.40 Aligned_cols=328 Identities=12% Similarity=0.038 Sum_probs=204.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHh----hccch-hhHHHHHHHHHHHHHHhhhhc---cchhHHHHHHHH
Q psy12242 80 IEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAER----FGRKG-GLLINNVFVVLAALLQGFSKA---FSSYEMIILGRF 151 (498)
Q Consensus 80 ~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr----~Grr~-~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~r~ 151 (498)
++..+. |.+.++..+..++..|+.|.++|| +|||| .++.+.+..+++..+....|. ...+..+++..+
T Consensus 42 ls~~~~----g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~ 117 (444)
T PRK09669 42 LSAAIM----GTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYI 117 (444)
T ss_pred CCHHHH----HHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHH
Confidence 788777 999999999999999999999998 88854 555677777777665555521 122456666777
Q ss_pred HHHhhhhhhhcchhhhhhccC-cccchhhhHhHHHHHHHHHHHHHHHHhc--Cccc---CCCCchhHHHHhhhHHHHHHH
Q psy12242 152 LIGINSGLNAGLAPMYLAEIS-PVHLRGAVGTVYQLVITISIVISQILGL--GGLL---GTADGWPLLLAFTLVPGIYQM 225 (498)
Q Consensus 152 l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~i~~--~~~~---~~~~~wr~~f~~~~~~~~~~~ 225 (498)
+.+.+.........++.+|++ ++++|++..++...+..+|..+++.+.. .... ....+|+..+.+.++++++..
T Consensus 118 l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~ 197 (444)
T PRK09669 118 LLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLF 197 (444)
T ss_pred HHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHH
Confidence 777777777778889999998 5688999888888888888777765321 1112 224589888887776665554
Q ss_pred hh-cccccCChhhHHHhcCCHHHHHHHHHhhcCCchhHHHHHHHHHhHHhhhcCCCchhhhHhccccchhhHHHHHHHHH
Q psy12242 226 IT-LPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMV 304 (498)
Q Consensus 226 ~~-~~~~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (498)
+. .+..+|.++. ++ +++.+.....++++||+.++......+....
T Consensus 198 ~~~~~~~~e~~~~-----~~-----------------------------~~~~~~~~~~~~~~~n~~~~~l~~~~~~~~~ 243 (444)
T PRK09669 198 FCCFFMTKERYTP-----EV-----------------------------DNSSSVWKDLKLLLGNSQWRIMFIFNVVLLT 243 (444)
T ss_pred HHHhCCeEEecCC-----CC-----------------------------cCCCCHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 33 3444553210 00 0001112355667788765543332222222
Q ss_pred HHHhhchHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHh
Q psy12242 305 AQQLSGINAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFV 384 (498)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (498)
... ......+++.+..-.++...+.......+..+++.++.+++.||+|+|+....+..+..+....+.+.. .
T Consensus 244 ~~~-----~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~--~ 316 (444)
T PRK09669 244 AVV-----TRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIP--P 316 (444)
T ss_pred HHH-----HHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhC--c
Confidence 211 112222333222211233334445555677788889999999999999988877655544333222211 1
Q ss_pred hhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCC-------CChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh
Q psy12242 385 EIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFS-------QSARPLATSLAVSINWTANFIVGLGFLPIESIIHG 456 (498)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~ 456 (498)
+ ..+.. ....++.+.......+..+++.+|..+ .+..|...|..+....+|..+++.+.|.+.+..|+
T Consensus 317 ~---~~~~~-~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 317 S---NVWLI-FALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred c---hHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 1 11112 222223333333445777788888764 34457788999999999999999999999887654
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-20 Score=184.16 Aligned_cols=336 Identities=14% Similarity=0.078 Sum_probs=204.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHH----hhcc-chhhHHHHHHHHHHHHHHhhhhcc-c--hhHHHHHHHH
Q psy12242 80 IEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAE----RFGR-KGGLLINNVFVVLAALLQGFSKAF-S--SYEMIILGRF 151 (498)
Q Consensus 80 ~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~d----r~Gr-r~~l~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~r~ 151 (498)
++...+ |.+..+..+.-++..|+.|.++| |+|| |+.++.+.+..+++..+....+.. + .+..+++..+
T Consensus 39 ls~~~v----g~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~ 114 (473)
T PRK10429 39 LSVGLV----GTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYI 114 (473)
T ss_pred CCHHHH----HHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHH
Confidence 677777 99999999999999999999999 6699 556667777777776665443211 1 2345666677
Q ss_pred HHHhhhhhhhcchhhhhhccC-cccchhhhHhHHHHHHHHHHHHHHHHhcC-----cccCCCCchhHHHHhhhHHHHHHH
Q psy12242 152 LIGINSGLNAGLAPMYLAEIS-PVHLRGAVGTVYQLVITISIVISQILGLG-----GLLGTADGWPLLLAFTLVPGIYQM 225 (498)
Q Consensus 152 l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~i~~~-----~~~~~~~~wr~~f~~~~~~~~~~~ 225 (498)
+.+++.....+...++..|.. ++++|.+..++...+.++|..+.+.+... +...+..+|+....+.+++.++..
T Consensus 115 l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~ 194 (473)
T PRK10429 115 LWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVST 194 (473)
T ss_pred HHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHH
Confidence 778888888889999999999 58999999998777777775555442210 111223467777777666655544
Q ss_pred -hhcccccCChhhHHHhcCCHHHHHHHHHhhcCCchhHHHHHHHHHhHHhhhcCCCchhhhHhccccchhhHHHHHHHHH
Q psy12242 226 -ITLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMV 304 (498)
Q Consensus 226 -~~~~~~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (498)
+..+..||.+.. +..+. .++++...+..++.+++|+.++..+...+....
T Consensus 195 ~~~~~~~~e~~~~----~~~~~-------------------------~~~~~~~~~~~~~~~~~n~~~~~ll~~~~~~~~ 245 (473)
T PRK10429 195 IITLRNVHEVYSS----DNQVS-------------------------AEGSHLTLKDIVALIYKNDQLSCLLGMALAYNI 245 (473)
T ss_pred HHHHcCceecCCc----ccccc-------------------------ccccCCCHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 333446665310 00000 000001111233445566543322222111111
Q ss_pred HHHhhchHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHh
Q psy12242 305 AQQLSGINAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFV 384 (498)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (498)
.......+.+++.+....+....+.+.....+..+++.++.+++.||+|+|+.+..+..+..++.+.+.......
T Consensus 246 -----~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~ 320 (473)
T PRK10429 246 -----ASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAA 320 (473)
T ss_pred -----HHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 222333344445444333455556666667788899999999999999999998877766555544443221111
Q ss_pred hhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCC-------CChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh
Q psy12242 385 EIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFS-------QSARPLATSLAVSINWTANFIVGLGFLPIESIIHG 456 (498)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~ 456 (498)
. ...+..+ ....+.+.......+...++.+|..+ .+..|...|.......++..+++.+.|.+.+..|+
T Consensus 321 ~--~~~~~~~-i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 321 P--HNALLIV-IAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred c--hhHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 1 1111121 22222222222334566677778754 44457789999999999999999999999886653
|
|
| >KOG4686|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.4e-22 Score=169.04 Aligned_cols=387 Identities=17% Similarity=0.090 Sum_probs=234.9
Q ss_pred hHHHHHHHHHhhhhhccccccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHh
Q psy12242 27 GKLAFAISASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAA 106 (498)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~ 106 (498)
.++...+...|+. .|-..++...-+..+...+.+.+ ++.++. .++.+.|++...+.+++
T Consensus 40 ~hr~m~lv~mc~l-gfgsyfcyd~p~alq~~fk~d~n----------------i~~akf----tLlYsvYSwPNvVlcff 98 (459)
T KOG4686|consen 40 GHRFMALVFMCLL-GFGSYFCYDAPGALQIDFKLDSN----------------IEYAKF----TLLYSVYSWPNVVLCFF 98 (459)
T ss_pred hhHHHHHHHHHHh-cccceeecCCchhhhhhhhcccc----------------cceeee----eeeeeeccCCCEEEeee
Confidence 3455666666666 47777776654444444444444 555555 88999999999999999
Q ss_pred HHHHHHh-hccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHH
Q psy12242 107 TGYVAER-FGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQ 185 (498)
Q Consensus 107 ~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~ 185 (498)
.|++.|| +|-|..-++-++...+|.++++.-...+.+|.+..+|++.|+|.-...++.+++..-|+..|+.+.++|+..
T Consensus 99 gGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlql 178 (459)
T KOG4686|consen 99 GGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQL 178 (459)
T ss_pred cceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHH
Confidence 9999996 788877777777778888877654333889999999999999988888999999999999999999999998
Q ss_pred HHHHHHHHHHHHHhcCcccCCCCch------hHHHH----hhhHHHHHHHhhcccccCChhhHHHhcCCHHHHHHHHHhh
Q psy12242 186 LVITISIVISQILGLGGLLGTADGW------PLLLA----FTLVPGIYQMITLPFCPESPKYILLSKGQELEAQRALSWL 255 (498)
Q Consensus 186 ~~~~~g~~~~~~i~~~~~~~~~~~w------r~~f~----~~~~~~~~~~~~~~~~~e~p~~l~~~~~~~~~a~~~~~~~ 255 (498)
...-+|..+-.. +..++.+..+- +.... +....+...++... ...-.+++|++.+.+
T Consensus 179 SvAR~GstvNf~--lm~~ly~~~~~~~~~~ghT~LG~~l~~~~~tc~~slical----------~lg~~D~rAerilh~- 245 (459)
T KOG4686|consen 179 SVARLGSTVNFL--LMPFLYDTMGRMFPGVGHTLLGLWLCFEVKTCKQSLICAL----------SLGLSDDRAERILHL- 245 (459)
T ss_pred HHHHhhceeeee--ecHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHH----------HhhhhhhHHHHHHhh-
Confidence 888888765433 11121111100 00000 00000000000000 000011122221111
Q ss_pred cCCchhHHHHHHHHHhHHhhhcCCCchhhhHhc-cccchhhHHHHHHHHHHHHhhchHHHHHhHHHHH-hhcCCCchhHH
Q psy12242 256 RGTIEVHDEMDEMRAEYESIKLIPKVSLREMFT-NAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIF-TMAQLSDTAAQ 333 (498)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~ 333 (498)
++.+..+.....+... .|.+|. .....+..... ...+....|.++ +.+|+|+..++
T Consensus 246 -----------------e~g~~Ge~pkLtdv~~f~ppfw~----~~iicv~yyva-~fPFi~lg~~fF~~rfGlS~~~a~ 303 (459)
T KOG4686|consen 246 -----------------EEGFLGEEPKLTDVNTFYPPFWV----LVIICVLYYVA-WFPFITLGPMFFQKRFGLSAVSAG 303 (459)
T ss_pred -----------------hcCcccCCcccccccccCccHHH----HHHHHHHHHHH-HHHHhhhhHHHHHHhhCCChhhcc
Confidence 1111111111111111 122332 22222222221 333444444444 67899999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhh
Q psy12242 334 WATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPW 413 (498)
Q Consensus 334 ~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (498)
.+.+.......+.+++.|.++||.|++...+.+..+..+..=....... +.++.....+.+......... +
T Consensus 304 ~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~-----lsPy~~m~~lGLsysllAcsl----W 374 (459)
T KOG4686|consen 304 NILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTF-----LSPYTSMTFLGLSYSLLACSL----W 374 (459)
T ss_pred chhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhh-----ccHHHHHHHHhhhHHHHHHHH----h
Confidence 9998888889999999999999999998877665555444333222222 334443333333322222223 3
Q ss_pred hhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhH-----HHHHHHHHHHHHHHHHHHhcc
Q psy12242 414 FLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIHGY-----VFTIFAVLQAMFVLFIYKKVP 478 (498)
Q Consensus 414 ~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~~-----~~~~~~~~~~~~~~~~~~~~~ 478 (498)
..++.+.|++..|+++|+++.+.++|-++.|.+.|.+.|..|.+ .+.....+++....+++...+
T Consensus 375 P~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~N~ 444 (459)
T KOG4686|consen 375 PCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYLNK 444 (459)
T ss_pred hhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhheec
Confidence 35567779999999999999999999999999999999987732 333344444455555544333
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.4e-19 Score=170.41 Aligned_cols=367 Identities=16% Similarity=0.114 Sum_probs=235.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhhH-HHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcc
Q psy12242 85 VTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLL-INNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGL 163 (498)
Q Consensus 85 ~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~ 163 (498)
.+...++..++..+..++..|+.|.++|+-|+||.++ ....+..+++.+..+.. .++++...+.-++.-++.+.....
T Consensus 68 ~~s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~-~~~~~~~~~l~iia~v~~~~~~vf 146 (477)
T PF11700_consen 68 TSSLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVS-PGQWWLALVLFIIANVGYEASNVF 146 (477)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHHHHHHHH
Confidence 3455688899999999999999999999999876554 44455555666666641 255666666677777788888889
Q ss_pred hhhhhhccCcccch--------------------------hhhHhHHHHHHHHHHHHHHHHhcCcccC------CCCchh
Q psy12242 164 APMYLAEISPVHLR--------------------------GAVGTVYQLVITISIVISQILGLGGLLG------TADGWP 211 (498)
Q Consensus 164 ~~~~i~~~~~~~~r--------------------------~~~~~~~~~~~~~g~~~~~~i~~~~~~~------~~~~wr 211 (498)
..+++.|..+++++ ++..+.-.....+|.++.-.+.+..... +...-|
T Consensus 147 yna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r 226 (477)
T PF11700_consen 147 YNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIR 226 (477)
T ss_pred HHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhh
Confidence 99999999999888 8999988888888888877654322111 123358
Q ss_pred HHHHhhhHHH-HHHHhhcccccCChhhHHHhcCCHHHHHHHHHhhcCCchhHHHHHHHHHhHHhhhcCCCchhhhHhccc
Q psy12242 212 LLLAFTLVPG-IYQMITLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIPKVSLREMFTNA 290 (498)
Q Consensus 212 ~~f~~~~~~~-~~~~~~~~~~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (498)
..+.+.++.- +..+..++++||.|+.. ..++...-.+...+ + -...++++.|.|
T Consensus 227 ~~~~~~a~ww~vfsiP~~~~~~~~~~~~-~~~~~~~~~~~g~~-------------~-----------l~~t~k~~~~~~ 281 (477)
T PF11700_consen 227 VAFLIVALWWLVFSIPLFLWLPDRPGPR-PLPSGSSYLRFGFK-------------R-----------LWRTFKEIRKLR 281 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCC-CCCcchhHHHHHHH-------------H-----------HHHHHHHHHhCh
Confidence 8887776654 44455667788876410 00000000000000 0 011233333323
Q ss_pred cchhhHHHHHHHHHHHHhhchHHHHHhH-HHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCc--eehhhhh
Q psy12242 291 QLRIPLFISMTVMVAQQLSGINAVIYFS-TKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRK--TLLLIGF 367 (498)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~--~~~~~~~ 367 (498)
.+...++.+++..- +...+.... .+..++.|++..+...+.....+..++|.++.+++.||+|.| +.+..+.
T Consensus 282 ----~~~~fLia~~l~~d-g~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l 356 (477)
T PF11700_consen 282 ----QLFLFLIAYFLYSD-GVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISL 356 (477)
T ss_pred ----HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHH
Confidence 23333333333332 334444444 444468899999999999999999999999999999999998 6665555
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhH
Q psy12242 368 MGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGF 447 (498)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~ 447 (498)
....+..+.-.+.................+.++.+.+..+..+...++.+|+.|+++.+..+|+....+...++++|.++
T Consensus 357 ~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~ 436 (477)
T PF11700_consen 357 ILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLF 436 (477)
T ss_pred HHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44433222211100000000011112333444555556666788899999999999999999999999999999999999
Q ss_pred HHHHHhhhh--HHHHHHHHHHHHHHHHHHHhccCCCCC
Q psy12242 448 LPIESIIHG--YVFTIFAVLQAMFVLFIYKKVPETKNK 483 (498)
Q Consensus 448 ~~l~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (498)
|.+.+..+. +.+....++.+++.+++ ...+..|++
T Consensus 437 g~i~~~tg~~r~g~~~l~~lf~~gl~ll-~~v~~~~g~ 473 (477)
T PF11700_consen 437 GLITDATGSQRYGFLFLLVLFLIGLILL-FFVDVEKGR 473 (477)
T ss_pred HHHHHHhCCchhHHHHHHHHHHHHHHHH-hhccchhhh
Confidence 999999884 34444444445554444 444444443
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-20 Score=183.64 Aligned_cols=373 Identities=12% Similarity=0.029 Sum_probs=231.3
Q ss_pred HHhhhhhccccccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q psy12242 35 ASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERF 114 (498)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~ 114 (498)
+.... ++..|..........+.++++++ +++.++ +...++..+...+-.+ +|+++||+
T Consensus 30 ~~~~~-y~~qGl~~l~~~~~~~~l~~~lg----------------~s~~~i----~~~~sl~~lpw~~K~l-~g~l~D~~ 87 (468)
T TIGR00788 30 IGLQV-LFVKGIAGLMRLPLSPMLTDDLG----------------LDGARY----QRLVGLSSLGWALKPF-AGVMSDTF 87 (468)
T ss_pred HHHHH-HHHhhHHHHhhhhhhHHHHHhcC----------------CCHHHH----HHHHHHHHHHHHHHHH-HHHHHHhc
Confidence 33334 56677773333345577787888 899888 8899999999999665 99999999
Q ss_pred c-----cchhhHHHHHHHH-HHHHHHhhhhccch-hHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHh---HH
Q psy12242 115 G-----RKGGLLINNVFVV-LAALLQGFSKAFSS-YEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGT---VY 184 (498)
Q Consensus 115 G-----rr~~l~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~---~~ 184 (498)
+ ||+.++++.++.. +.....+.. ++ .....+.+++.+++.+...++..++..|..+ +++....+ ..
T Consensus 88 ~i~G~rRr~~l~~~~~l~~~~~~~~l~~~---~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~ 163 (468)
T TIGR00788 88 PLFGYTKRWYLVLSGLLGSAILYGLLPGK---VSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWM 163 (468)
T ss_pred CCCCccchHHHHHHHHHHHHHHHHhcccc---cchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHH
Confidence 7 6777777776653 333333333 34 3444458999999999999999999999998 55544333 33
Q ss_pred HHHHHHHHHHHHHHhcCcccCCCCchhHHHHhhhHHHHHHHhhcccccCChhhHHHhcCCHHHHHHHHHhhcCCchhHHH
Q psy12242 185 QLVITISIVISQILGLGGLLGTADGWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDE 264 (498)
Q Consensus 185 ~~~~~~g~~~~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~ 264 (498)
....++|.++++. +++.+.+..+||..|++.+.+.++..+...+++|++.. ..++..++... ..
T Consensus 164 ~~~~~~G~~vg~~--l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~--~~~~~~~~~~~-----~~------- 227 (468)
T TIGR00788 164 WGASATGGLISSL--LGGPLLDKTLTRILFLITAALLLLQLFVSNLSKERRAF--VRPRIGTYLEM-----NM------- 227 (468)
T ss_pred HHHHHHHHHHHHH--HHHHHHHhcCcchHHHHHHHHHHHHHHHHHhccccccc--ccccccccchh-----hh-------
Confidence 3344578888888 44566777899999999877777666666777886311 00100000000 00
Q ss_pred HHHHHHhHHhhhcCCCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHH
Q psy12242 265 MDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNV 344 (498)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 344 (498)
........+..++.....++.+++|..++.+...++.+. ..... ....+. +..+..|+++.+.|......+++.+
T Consensus 228 -~~~~~~~~~~~~~~~~~l~~~l~~~~i~~~l~fifl~~~--~~~~~-~~~~f~-~~~~~lG~s~~~~G~~~~~~~v~~i 302 (468)
T TIGR00788 228 -ALLTLGVLANVKVQILGLRGAIQLLEIAKPLIFIFLSYA--NLPGA-SGSVFC-ATTQCLPGGPSFSGMSKVVGNLGSL 302 (468)
T ss_pred -hhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHh--hcCCC-CceeEE-EEcccCCCCcchhhhHHHHHHHHHH
Confidence 000000000000001133445566544433222222111 11111 111111 1224579999999999999999999
Q ss_pred HHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhh-h--hhHHHHHHHHHHHHHHHhcCccchhhhhhcccCC
Q psy12242 345 VMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEI-F--VMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFS 421 (498)
Q Consensus 345 ~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 421 (498)
++....+++.+|++.|+.+.++.++.+++...........+. . ...+.......+..........+ ...++.+..|
T Consensus 303 ~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~-~~~~~~~~~p 381 (468)
T TIGR00788 303 CGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMP-FLVLLARLCP 381 (468)
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHcc-HHHHHHHhCC
Confidence 999999999999999999888887777766443211100000 0 00111111122222233333333 3667789999
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhh
Q psy12242 422 QSARPLATSLAVSINWTANFIVGLGFLPIESIIH 455 (498)
Q Consensus 422 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g 455 (498)
++.+|+.+++.+.+.++|..+++.+.+.+.+..|
T Consensus 382 ~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 382 SGCESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred CCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999877
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-18 Score=166.85 Aligned_cols=361 Identities=12% Similarity=0.077 Sum_probs=201.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh-ccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhh
Q psy12242 80 IEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERF-GRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSG 158 (498)
Q Consensus 80 ~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g 158 (498)
.++.+. +.+.+.+.....++.+++|+++||+ ||||.++++.++..++.++.+... .+...++++..+.++|.|
T Consensus 42 ls~~~a----~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~--~~~~~~~l~l~li~iG~G 115 (493)
T PRK15462 42 YDDNHA----YELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASE--IHPSFLYLSLAIIVCGYG 115 (493)
T ss_pred CCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhh--cchhHHHHHHHHHHHhcc
Confidence 777777 8899999999999999999999999 999999999999999988776541 122334444455556677
Q ss_pred hhhcchhhhhhccCccc--chhhhHhHHHHHHHHHHHHHHHHhcCcccCCCCchhHHHHhhhHHHHHHHhhcccccCChh
Q psy12242 159 LNAGLAPMYLAEISPVH--LRGAVGTVYQLVITISIVISQILGLGGLLGTADGWPLLLAFTLVPGIYQMITLPFCPESPK 236 (498)
Q Consensus 159 ~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~ 236 (498)
...+...++++|.+|++ +|..++++...+.++|..++|.+ .+++.+..|||+.|.+.++..++.++.+++.++...
T Consensus 116 ~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l--~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~ 193 (493)
T PRK15462 116 LFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIA--CGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFT 193 (493)
T ss_pred cccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHH--HHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 77788889999999875 69999999999999999999994 457777889999999876554444433322111100
Q ss_pred hH-HHhcCCHHHHHHHHHhhcCC---ch-hHHHHH--HHHHhHHhhhcC-----CCchhhhHhc---cccchhhHHHHHH
Q psy12242 237 YI-LLSKGQELEAQRALSWLRGT---IE-VHDEMD--EMRAEYESIKLI-----PKVSLREMFT---NAQLRIPLFISMT 301 (498)
Q Consensus 237 ~l-~~~~~~~~~a~~~~~~~~~~---~~-~~~~~~--~~~~~~~~~~~~-----~~~~~~~~~~---~~~~~~~~~~~~~ 301 (498)
.. ..+++..++ ++........ .. ...... ...+.....-.. ...-+..+.+ ++.-|+++.....
T Consensus 194 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~er~r~~~~~~ 272 (493)
T PRK15462 194 HTRGVNKKVLRA-TNFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIVATIIGLGVLAKIYRKAENQKQRKELGLIVT 272 (493)
T ss_pred cCCCCCCCCchh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhhHHHHHH
Confidence 00 000000000 0000000000 00 000000 000000000000 0000000000 0001222222221
Q ss_pred HHHHHH--hhchHHHHHhHHHHHhh------cCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCC--ce-----ehhhh
Q psy12242 302 VMVAQQ--LSGINAVIYFSTKIFTM------AQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGR--KT-----LLLIG 366 (498)
Q Consensus 302 ~~~~~~--~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~--~~-----~~~~~ 366 (498)
...+.. +..+.........+.++ .|++ ....++.+...+..++.+++..++-.|..| |. -..++
T Consensus 273 l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~-ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g 351 (493)
T PRK15462 273 LTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYT-VPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALG 351 (493)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhccchhccee-eCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHH
Confidence 111111 00111111111112221 1322 234567778888777777777776555532 21 14567
Q ss_pred hHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHH-HHHHHHHH
Q psy12242 367 FMGVFVVTVLLTIVMQFVEI-FVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSIN-WTANFIVG 444 (498)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~-~~~~~~~~ 444 (498)
.++.+++.+.+.+.....+. ...+..+++...++.........|+..++++++.|++.+|+.+|+..... .++..++.
T Consensus 352 ~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g 431 (493)
T PRK15462 352 LGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAG 431 (493)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777776654433221 11233444555566667777788999999999999999999999985533 45555555
Q ss_pred HhHHHH
Q psy12242 445 LGFLPI 450 (498)
Q Consensus 445 ~~~~~l 450 (498)
.+.+..
T Consensus 432 ~~~~~~ 437 (493)
T PRK15462 432 VIADQT 437 (493)
T ss_pred HHHHHh
Confidence 544433
|
|
| >KOG2563|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.4e-19 Score=161.88 Aligned_cols=396 Identities=14% Similarity=0.107 Sum_probs=254.3
Q ss_pred CcchHHHHHHHHHhhhhhccccccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHH
Q psy12242 24 GLNGKLAFAISASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIG 103 (498)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~ 103 (498)
+..+++|.++++.++. .+..++.-.-+++........|+ +.+.. -|+.-+|++.+...
T Consensus 38 rVy~rRW~vLl~~slL-~~SN~~qWI~ya~i~n~~~~~Yg-----------------s~~~~----~wlsmIym~v~vp~ 95 (480)
T KOG2563|consen 38 RVYPRRWVVLLAFSLL-NFSNGMQWIQYAPINNYVNSFYG-----------------SSSAA----DWLSMIYMVVSVPF 95 (480)
T ss_pred ccchhHhHHHHHHHHH-HhcCcchheeehhHHHHHHHHhc-----------------chHHH----HHHHHHHHHHHHHH
Confidence 5678899998888888 77777766655555555555544 22222 68889999999999
Q ss_pred HHhHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhcc---chhH--HHHHHHHHHHhhhhhhhcchhhhhhccCcccchh
Q psy12242 104 GAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAF---SSYE--MIILGRFLIGINSGLNAGLAPMYLAEISPVHLRG 178 (498)
Q Consensus 104 ~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~ 178 (498)
.+++-|+.|++|-|..++++..+.++|+.+-..+... +.++ ..+.+..+.+.++-.....-.....-|++++||.
T Consensus 96 gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra 175 (480)
T KOG2563|consen 96 GFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRA 175 (480)
T ss_pred hhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhh
Confidence 9999999999999999999999999999998876432 4455 7778899999999888888788899999999999
Q ss_pred hhHhHHHHHHHHHHHHHHHHhcC----cccCCCCchhH--HHHhhhHHHHHHH-hhcccccCChhhHHHhcCCHHHHHHH
Q psy12242 179 AVGTVYQLVITISIVISQILGLG----GLLGTADGWPL--LLAFTLVPGIYQM-ITLPFCPESPKYILLSKGQELEAQRA 251 (498)
Q Consensus 179 ~~~~~~~~~~~~g~~~~~~i~~~----~~~~~~~~wr~--~f~~~~~~~~~~~-~~~~~~~e~p~~l~~~~~~~~~a~~~ 251 (498)
.+..+-.++..+|.+++.++.-. ..-.++..|.. .|+....++.+.+ +..+..+|.|+. +....++
T Consensus 176 ~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~t----Pps~s~~--- 248 (480)
T KOG2563|consen 176 IATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPT----PPSASQA--- 248 (480)
T ss_pred hhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC----CCchhHh---
Confidence 99998888888888888774321 11123445754 3443333332222 222333333321 0000000
Q ss_pred HHhhcCCchhHHHHHHHHHhHHhhhcCCCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHHhhcCCCchh
Q psy12242 252 LSWLRGTIEVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTMAQLSDTA 331 (498)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 331 (498)
. .++..-..+.+.+++++++. +....+ ...+..++...+.....+...|++...
T Consensus 249 --------------------~-~~~~~f~~si~~~~~n~~F~----il~~~y-gi~~g~F~~l~~~l~~~l~~sgY~~~~ 302 (480)
T KOG2563|consen 249 --------------------A-LQDASFPKSIKSCFKNRQFI----ILAICY-GIGLGLFNSLSTLLNLALCPSGYEGVF 302 (480)
T ss_pred --------------------h-hhcCcHHHHHHHHHcCccHH----HHHHHH-hhhHHHHHHHHHHhhhccccccCCccc
Confidence 0 00111234667788887543 222222 222222333333333333445777788
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccCCceeh-hhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccc
Q psy12242 332 AQWATLGMGTMNVVMTLVSLVLVEISGRKTLL-LIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGS 410 (498)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (498)
+|+......+++++++.+.|.+.||.+.-+.. ........++.+.+...... ......+.......+++..+..|
T Consensus 303 aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~----~~~~viv~~t~~~~g~~~~~~~P 378 (480)
T KOG2563|consen 303 AGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLF----LGDSVIVFTTCGLLGFFGTGYLP 378 (480)
T ss_pred cchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcc----CCceEehhhhHHHHHHhhcCCCC
Confidence 99999999999999999999999998765443 33333333332222221111 12223334444555666677778
Q ss_pred hhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhh----hHHHHHHH-HHHHHHHHHHHHhcc
Q psy12242 411 IPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIH----GYVFTIFA-VLQAMFVLFIYKKVP 478 (498)
Q Consensus 411 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g----~~~~~~~~-~~~~~~~~~~~~~~~ 478 (498)
+-..+..|..=+...++..|+.+..+++-+++-..+-+...+..+ +....+.. ..+.+..++..++.+
T Consensus 379 ig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~ 451 (480)
T KOG2563|consen 379 IGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRP 451 (480)
T ss_pred cceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhh
Confidence 888888888666667899999999999988888888888887776 44333333 334444444444333
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.2e-19 Score=171.37 Aligned_cols=324 Identities=12% Similarity=0.037 Sum_probs=189.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh----ccchhh-HHHHHHHHHHHHHHhhhhc--cc--hhHHHHHHH
Q psy12242 80 IEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERF----GRKGGL-LINNVFVVLAALLQGFSKA--FS--SYEMIILGR 150 (498)
Q Consensus 80 ~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~----Grr~~l-~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~r 150 (498)
++..++ |.+.+...+..++..++.|+++||. ||||.+ ..+.+...+..++....+. .+ ....+++..
T Consensus 41 l~~~~~----g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (448)
T PRK09848 41 VGAAAA----GTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTY 116 (448)
T ss_pred CCHHHH----HHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHH
Confidence 677777 9999999999999999999999996 777754 5565555554444322210 01 223345556
Q ss_pred HHHHhhhhhhhcchhhhhhccCc-ccchhhhHhHHHHH-----HHHHHHHHHHHhcCcccCCC--CchhHHHHhhhHHHH
Q psy12242 151 FLIGINSGLNAGLAPMYLAEISP-VHLRGAVGTVYQLV-----ITISIVISQILGLGGLLGTA--DGWPLLLAFTLVPGI 222 (498)
Q Consensus 151 ~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~-----~~~g~~~~~~i~~~~~~~~~--~~wr~~f~~~~~~~~ 222 (498)
++.+++.+...+...++..|..+ +++|.+..+....+ ..++..++|.+.. ..... .+|.....+.+++.+
T Consensus 117 ~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~--~~g~~~~~~~~~~~~~~~v~~~ 194 (448)
T PRK09848 117 MGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKN--SSPEEMVSVYHFWTIVLAIAGM 194 (448)
T ss_pred HHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCchhhhHHHHHHHHHHHHH
Confidence 77888888888888888787775 46788877665543 3355556666432 22111 122211122222222
Q ss_pred HH-HhhcccccCChhhHHHhcCCHHHHHHHHHhhcCCchhHHHHHHHHHhHHhhhcCCCchhhhHhccccchhhHHHHHH
Q psy12242 223 YQ-MITLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMT 301 (498)
Q Consensus 223 ~~-~~~~~~~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (498)
+. ++.....||+++. ++ ++...+..++++++++.++...+..++
T Consensus 195 ~~~~~~~~~~~e~~~~-----~~------------------------------~~~~~~~~~~~l~~n~~f~~~~~~~~~ 239 (448)
T PRK09848 195 VLYFICFKSTRENVVR-----IV------------------------------AQPSLKISLQTLKRNRPLFMLCIGALC 239 (448)
T ss_pred HHHHHHHcCcEeccCC-----Cc------------------------------cCCCHHHHHHHHhCCchHHHHHHHHHH
Confidence 22 2223345554210 00 000112245667888765433222222
Q ss_pred HHHHHHhhchHHHHHhHHHHHh-hcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHH
Q psy12242 302 VMVAQQLSGINAVIYFSTKIFT-MAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIV 380 (498)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~ 380 (498)
... .........+++.+ ..|.++...++......++.+++.++.+++.||+++|+.+..+..+..++.+.+.+.
T Consensus 240 ~~~-----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~ 314 (448)
T PRK09848 240 VLI-----STFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWV 314 (448)
T ss_pred HHH-----HHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc
Confidence 222 12233334555543 346665555444444466778899999999999999999988887777766555432
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCC-------ChhhHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q psy12242 381 MQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQ-------SARPLATSLAVSINWTANFIVGLGFLPIESI 453 (498)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~ 453 (498)
. . ...+.. .....+.+.......+...++..|..|. +.+|...|+.+....+|..+++.+.+.+.+.
T Consensus 315 ~---~--~~~~~~-~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~ 388 (448)
T PRK09848 315 S---V--WSLPVA-LVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGL 388 (448)
T ss_pred C---c--hhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1 111111 1112222222233345566676777654 3469999999999999999999999998876
Q ss_pred hh
Q psy12242 454 IH 455 (498)
Q Consensus 454 ~g 455 (498)
.|
T Consensus 389 ~G 390 (448)
T PRK09848 389 SG 390 (448)
T ss_pred cC
Confidence 54
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-18 Score=168.87 Aligned_cols=328 Identities=16% Similarity=0.168 Sum_probs=224.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHH----hhccchh-hHHHHHHHHHHHHHHhhh-hcc----chhHHHHHH
Q psy12242 80 IEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAE----RFGRKGG-LLINNVFVVLAALLQGFS-KAF----SSYEMIILG 149 (498)
Q Consensus 80 ~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~d----r~Grr~~-l~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~ 149 (498)
+++... |.+..+..+..++..|+.|.++| |+||||. ++++....+++.+++... |.. .....+.+.
T Consensus 34 l~~~~~----g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~ 109 (428)
T PF13347_consen 34 LSPALA----GLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVF 109 (428)
T ss_pred CCHHHH----HHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHH
Confidence 677766 99999999999999999999999 8998765 556778888877777755 311 123445777
Q ss_pred HHHHHhhhhhhhcchhhhhhccCc-ccchhhhHhHHHHHHHHHHHHHHHHhcC--cccCCC---CchhHHHHhhhHHHHH
Q psy12242 150 RFLIGINSGLNAGLAPMYLAEISP-VHLRGAVGTVYQLVITISIVISQILGLG--GLLGTA---DGWPLLLAFTLVPGIY 223 (498)
Q Consensus 150 r~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~i~~~--~~~~~~---~~wr~~f~~~~~~~~~ 223 (498)
.++..++.........++..|..+ +++|.+..+....+..+|.++...+... ....+. .+|++..++.+++.++
T Consensus 110 ~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v 189 (428)
T PF13347_consen 110 YILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLV 189 (428)
T ss_pred HHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHH
Confidence 777899999999999999999997 5799999999999888888755543211 112221 2799999888777766
Q ss_pred HHhh-cccccCChhhHHHhcCCHHHHHHHHHhhcCCchhHHHHHHHHHhHHhhhcCCCchhhhHhccccchhhHHHHHHH
Q psy12242 224 QMIT-LPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTV 302 (498)
Q Consensus 224 ~~~~-~~~~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (498)
..+. .+..+|.++. .+.++++.+-++.+++++++|.++......++.
T Consensus 190 ~~~i~~~~~ke~~~~--------------------------------~~~~~~~~~~~~~~~~~~~nr~~~~l~~~~~~~ 237 (428)
T PF13347_consen 190 FFLITFFFVKERSVE--------------------------------VTEQEKKISLRDSLRSLFRNRPFRILLLAFFLQ 237 (428)
T ss_pred Hhhhhhheeeecccc--------------------------------ccccccccccccchhhhcccchHHHHHHHHHHH
Confidence 6544 4456762110 001111222334567788887655332222222
Q ss_pred HHHHHhhchHHHHHhHHHHHhh-cCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHH
Q psy12242 303 MVAQQLSGINAVIYFSTKIFTM-AQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVM 381 (498)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~ 381 (498)
... ........+++.+. .|.+ ...+.......+..+++.++.++++||+|+|+.+..+..+.+++.+.+.+..
T Consensus 238 ~~~-----~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~ 311 (428)
T PF13347_consen 238 WLA-----FALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLG 311 (428)
T ss_pred Hhh-----hhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHH
Confidence 222 22233333444433 3444 5566777788899999999999999999999999999999888888776653
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCC-------CChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q psy12242 382 QFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFS-------QSARPLATSLAVSINWTANFIVGLGFLPIESII 454 (498)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~ 454 (498)
. .+...........+..........+++.+|+.+ ++..|..+|+.+....++..+++.+.+.+.+..
T Consensus 312 ~------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~ 385 (428)
T PF13347_consen 312 P------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALV 385 (428)
T ss_pred h------hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHh
Confidence 2 122223333334444444455777778888876 345689999999999999999999999988766
Q ss_pred h
Q psy12242 455 H 455 (498)
Q Consensus 455 g 455 (498)
|
T Consensus 386 G 386 (428)
T PF13347_consen 386 G 386 (428)
T ss_pred C
Confidence 5
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.2e-18 Score=164.45 Aligned_cols=326 Identities=13% Similarity=0.063 Sum_probs=195.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHh----hccchh-hHHHHHHHHHHHHHHhhhhcc---chhHHHHHHHH
Q psy12242 80 IEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAER----FGRKGG-LLINNVFVVLAALLQGFSKAF---SSYEMIILGRF 151 (498)
Q Consensus 80 ~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr----~Grr~~-l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~r~ 151 (498)
++...+ |.+..+.-+--++..|+.|.++|| +||||. ++++.+..+++..++...|.. ..+..+.+.-+
T Consensus 42 l~~~~~----g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~ 117 (460)
T PRK11462 42 IPAGFV----GTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYT 117 (460)
T ss_pred CCHHHH----HHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHH
Confidence 677776 999999999999999999999995 798755 456667777777666544311 11445666777
Q ss_pred HHHhhhhhhhcchhhhhhccCc-ccchhhhHhHHHHHHHHHHHHHHHHhcC--cccC---CCCchhHHHHhhhHHHHHHH
Q psy12242 152 LIGINSGLNAGLAPMYLAEISP-VHLRGAVGTVYQLVITISIVISQILGLG--GLLG---TADGWPLLLAFTLVPGIYQM 225 (498)
Q Consensus 152 l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~i~~~--~~~~---~~~~wr~~f~~~~~~~~~~~ 225 (498)
+..++.......-.++..|.++ ++||++..++...+..+|..+++.+... .... +..+|+....+.+++.++..
T Consensus 118 ~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~ 197 (460)
T PRK11462 118 LLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMML 197 (460)
T ss_pred HHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHH
Confidence 7788888888899999999997 7899999999999999888777654221 1111 12468777766666554444
Q ss_pred hh-cccccCChhhHHHhcCCHHHHHHHHHhhcCCchhHHHHHHHHHhHHhhhcCCCchhhhHhccccchhhHHHHHHHHH
Q psy12242 226 IT-LPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMV 304 (498)
Q Consensus 226 ~~-~~~~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (498)
+. ....+|.++. ++ ++...+...+..++|+.++.. ....+...
T Consensus 198 ~i~~~~~kE~~~~-----~~------------------------------~~~~~~~~l~~~~~Nk~~~~l-~~~~~~~~ 241 (460)
T PRK11462 198 AFCFFTTKERVEA-----PP------------------------------TTTSMREDLRDIWQNDQWRIV-GLLTIFNI 241 (460)
T ss_pred HHHHhcceeccCC-----Cc------------------------------cCCCHHHHHHHHhCChHHHHH-HHHHHHHH
Confidence 33 3334554210 00 000011234556666654422 22211221
Q ss_pred HHHhhchHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHh
Q psy12242 305 AQQLSGINAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFV 384 (498)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (498)
...........++..+.. | ++...+.+.....+..+++.++++++.||+++|+....+..+..+..+.+.+..
T Consensus 242 ~~~~~~~~~~~y~~~y~~---g-~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~--- 314 (460)
T PRK11462 242 LAVCVRGGAMMYYVTWIL---G-TPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVP--- 314 (460)
T ss_pred HHHHHHHhHhhhhhhhhc---C-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhc---
Confidence 111111222333333332 2 233344566677788899999999999999999877654444333333322211
Q ss_pred hhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCC-------CChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhh
Q psy12242 385 EIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFS-------QSARPLATSLAVSINWTANFIVGLGFLPIESIIH 455 (498)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g 455 (498)
. ...........+ .+.......++.+++..|..+ .+..|...+.......++..+++.+.|.+.+..|
T Consensus 315 ~--~~~~~~~~~~~l-~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~G 389 (460)
T PRK11462 315 M--QASITMFVFIFV-IGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGG 389 (460)
T ss_pred h--hHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 1 111111111122 222223333555666666654 3444666677778899999999999999887654
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1e-17 Score=151.71 Aligned_cols=336 Identities=13% Similarity=0.087 Sum_probs=232.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchh-hHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhh
Q psy12242 81 EQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGG-LLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGL 159 (498)
Q Consensus 81 ~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 159 (498)
++.+.+..+|...++..+-.++.+|+.|.++|+.|+||. +-....+..++..+..+++.-..++..++...+..++...
T Consensus 52 ~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~ 131 (438)
T COG2270 52 DPASSTAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEF 131 (438)
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcch
Confidence 555666778999999999999999999999999997654 5555556666666777774222456666778889999999
Q ss_pred hhcchhhhhhccCcccchhhhHhHHHHHHHHHHHHHHHHhcCccc----------------CCCCchhHHHHhhhHHHHH
Q psy12242 160 NAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLL----------------GTADGWPLLLAFTLVPGIY 223 (498)
Q Consensus 160 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~----------------~~~~~wr~~f~~~~~~~~~ 223 (498)
..+...+++.+..++++-++..++-.....+|+++.-+....... .+...-|..+.+.++..++
T Consensus 132 s~Vfyds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li 211 (438)
T COG2270 132 SNVFYDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLL 211 (438)
T ss_pred hheehhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHH
Confidence 999999999999999888888887777777777665544211111 1334568888777665554
Q ss_pred HH-hhcccccCChhhHHHhcCCH-HHHHHHHHhhcCCchhHHHHHHHHHhHHhhhcCCCchhhhHhccccchhhHHHHHH
Q psy12242 224 QM-ITLPFCPESPKYILLSKGQE-LEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMT 301 (498)
Q Consensus 224 ~~-~~~~~~~e~p~~l~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (498)
.. ..+++++|.++- +... +..++. .++ -+.+++++.+++... ....
T Consensus 212 ~~iPm~~~v~~~~~~----~~~~~~~l~~g-------------~k~-----------L~~t~k~i~~~~~i~----~FLi 259 (438)
T COG2270 212 FALPMILNVHDAEKI----SSPPPTALRNG-------------FKE-----------LKSTFKEIRGRKNLV----LFLI 259 (438)
T ss_pred HHhHHHhcccccccc----cccchHHHHHH-------------HHH-----------HHHHHHHHhcccchH----HHHH
Confidence 44 455566665421 0000 000000 000 112445555544322 2222
Q ss_pred HHHHHHhhchHHHHHhHHHHH-hhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHH
Q psy12242 302 VMVAQQLSGINAVIYFSTKIF-TMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIV 380 (498)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~ 380 (498)
..++.+ -+.+....+...+- .++|++..+...+....++..++|.++.|++.||+|.|+++..+.++..+..+...+.
T Consensus 260 A~~~~~-DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~ 338 (438)
T COG2270 260 ARFFYI-DGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFL 338 (438)
T ss_pred HHHHHH-hhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHc
Confidence 222222 23445555555554 4889999999999999999999999999999999999999988887776666555443
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhH
Q psy12242 381 MQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIHGY 457 (498)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~~ 457 (498)
.. -.....+.++.+.+..+......++..+.+|+++.++..|+++..++..++.+|.+.+.+.+..+..
T Consensus 339 ~~--------~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~ 407 (438)
T COG2270 339 EG--------ELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSS 407 (438)
T ss_pred cc--------cHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcch
Confidence 21 1222333444555556667888999999999999999999999999999999999999999988864
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.6e-17 Score=154.11 Aligned_cols=332 Identities=17% Similarity=0.133 Sum_probs=229.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHh----hccc-hhhHHHHHHHHHHHHHHhhhhc---cchhHHHHHHHH
Q psy12242 80 IEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAER----FGRK-GGLLINNVFVVLAALLQGFSKA---FSSYEMIILGRF 151 (498)
Q Consensus 80 ~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr----~Grr-~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~r~ 151 (498)
++.... |.+..+.-+--++.-|+.|.+.|| +||+ +.++.+.+..++.+.++-.++. ..+....++...
T Consensus 45 is~~~a----G~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~ 120 (467)
T COG2211 45 LSAALA----GTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYM 120 (467)
T ss_pred CcHHHH----HHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHH
Confidence 566666 888888888889999999999995 8875 4667777889999998888742 124556677889
Q ss_pred HHHhhhhhhhcchhhhhhccCc-ccchhhhHhHHHHHHHHHHHHHHHH-----hcCcccCCCCchhHHHHhhhHHHHHHH
Q psy12242 152 LIGINSGLNAGLAPMYLAEISP-VHLRGAVGTVYQLVITISIVISQIL-----GLGGLLGTADGWPLLLAFTLVPGIYQM 225 (498)
Q Consensus 152 l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~i-----~~~~~~~~~~~wr~~f~~~~~~~~~~~ 225 (498)
+.+++.......-.++..|+++ ++||.+..++...+.++|.++...+ ...+--....||+..-++.+++.++..
T Consensus 121 l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~ 200 (467)
T COG2211 121 LLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILL 200 (467)
T ss_pred HHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999985 6899999999999999886665442 211111124588888888877777666
Q ss_pred hhccc-ccCChhhHHHhcCCHHHHHHHHHhhcCCchhHHHHHHHHHhHHhhhcCCCchhhhHhccccchhhHHHHHHHHH
Q psy12242 226 ITLPF-CPESPKYILLSKGQELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMV 304 (498)
Q Consensus 226 ~~~~~-~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (498)
+..++ ++|.+.. +... ++..+.+.+..+..+++|+.++...+..++...
T Consensus 201 l~~~~~v~ER~~~----~~~~--------------------------~~~~~~~~~~~~~~~~~Nrp~~~~l~~~l~~~~ 250 (467)
T COG2211 201 LFCFFNVKERVVE----TQPT--------------------------KTGVKLKLKDSFLLIFKNRPLLLLLLMNLLLFI 250 (467)
T ss_pred HHHHHHhhcccCc----cccC--------------------------cccccccHHHHHHHHHccchHHHHHHHHHHHHH
Confidence 55443 5665311 0000 000111112234467778765544332222222
Q ss_pred HHHhhchHHHHHhHHHHHh-hcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHH
Q psy12242 305 AQQLSGINAVIYFSTKIFT-MAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQF 383 (498)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (498)
. .+.......++.+ ..|.+...............+++.++..++.+|+|+|++...+.++.+++.+++.+..
T Consensus 251 ~-----~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~-- 323 (467)
T COG2211 251 A-----FNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTP-- 323 (467)
T ss_pred H-----HHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhc--
Confidence 2 2233333333332 2366666777777777888888899999999999999999999988888888877754
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCC-------CChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh
Q psy12242 384 VEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFS-------QSARPLATSLAVSINWTANFIVGLGFLPIESIIHG 456 (498)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~ 456 (498)
......+++..+..........++.+++++|... .+..|...|....+..+|.+++..+.|++.+..|+
T Consensus 324 ----~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~Gy 399 (467)
T COG2211 324 ----AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIGY 399 (467)
T ss_pred ----CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 1223333333344444455566888889888753 45568899999999999999999999999887764
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.7e-19 Score=162.40 Aligned_cols=358 Identities=13% Similarity=0.135 Sum_probs=206.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhhHHHHHHH--HHHHHH-Hhhhhcc-chh-HHHHHHHHHHH
Q psy12242 80 IEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFV--VLAALL-QGFSKAF-SSY-EMIILGRFLIG 154 (498)
Q Consensus 80 ~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~--~~~~~~-~~~~~~~-~~~-~~~~~~r~l~G 154 (498)
++.+++ |.+.++..+...+.+|+.|.++||+|.||-++...... ..+... ..+.|.. .|+ ...+++-...|
T Consensus 40 Ls~~~i----G~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~ 115 (412)
T PF01306_consen 40 LSGTEI----GIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLG 115 (412)
T ss_dssp --HHHH----HHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTT
T ss_pred CCHHHH----HHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888 99999999999999999999999999777554433222 222222 2233110 222 22233333344
Q ss_pred hhhhhhhcchhhhhhccCcccchhhhHhHHHHHHHHHHHHHHHHhcCcccCCCCchhHHHHhhhHHHHHHHhhc-ccccC
Q psy12242 155 INSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLLGTADGWPLLLAFTLVPGIYQMITL-PFCPE 233 (498)
Q Consensus 155 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e 233 (498)
+......|+..+++.++. ++.+.-.|-..++.++|.+++..+ +|.+.+ .+-+..|++....+++..++. ..-|+
T Consensus 116 ~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~--~G~L~~-i~p~~~fwi~s~~~~il~lll~~~~~~ 190 (412)
T PF01306_consen 116 LVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLL--AGILFN-INPNIIFWIASAAAIILLLLLLLLKPD 190 (412)
T ss_dssp TTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHH--HHHHHH-HHHHHHHHHHHHHHHHHHHHHHSS---
T ss_pred HHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHH--hheeee-eCccHHHHHHHHHHHHHHHHHHHcCCc
Confidence 444455566666655554 233455566666777777777663 233332 244677777655554444333 33333
Q ss_pred ChhhHHHhcCCHHHHHHHHHhhcCCchhHHHHHHHHHhHHhhhcCCCchhhhHhccccchhhHHHHHHHHHHHHhhchHH
Q psy12242 234 SPKYILLSKGQELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINA 313 (498)
Q Consensus 234 ~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (498)
.++.. +..+.+ .+++++.+.+...+++|+|++|...+............-. .
T Consensus 191 ~~~~~--~~~~~~-------------------------~~~~~~~~~~~~~~l~k~~~fw~~~l~v~g~~~~Y~vfdq-q 242 (412)
T PF01306_consen 191 VPPQA--EVADAL-------------------------GAKKDKVSLKDVLSLFKMRNFWFFVLFVIGVAAIYDVFDQ-Q 242 (412)
T ss_dssp SSSSS---SSTTS-------------------------SS------HHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred Cchhh--hhhccc-------------------------ccCCCCCcHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH-H
Confidence 32210 000000 0000011112456778888777544443333333221111 1
Q ss_pred HHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHH
Q psy12242 314 VIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFC 393 (498)
Q Consensus 314 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (498)
+..|...+.++.+.+....|+..+...+.+++.-.+.+++.+|+|.|+.++++..++.+-.+..++.. .++..
T Consensus 243 f~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~-------~~~~i 315 (412)
T PF01306_consen 243 FPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFAT-------NPWVI 315 (412)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT---------SHHHH
T ss_pred HHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhc-------chHHH
Confidence 11122222233345556788888999999999999999999999999999999999998888877642 22222
Q ss_pred HHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHH-HHHHHHHHHHHHHhHHHHHHhhhh-HHHHHHHHHHHHHHH
Q psy12242 394 IILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLA-VSINWTANFIVGLGFLPIESIIHG-YVFTIFAVLQAMFVL 471 (498)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~~~~~~~~~~~~l~~~~g~-~~~~~~~~~~~~~~~ 471 (498)
...=.+...-+.. ......-|+.+.+|++..++.+.+. +...+++..+.+.+.|.++|..|. .++++.+.+.++..+
T Consensus 316 ~~~klLH~~e~~l-~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~l 394 (412)
T PF01306_consen 316 SLIKLLHALEFPL-LLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTL 394 (412)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHH
Confidence 2222222221211 1123445888999999999999885 577789999999999999999996 578788887777777
Q ss_pred HHHHhccCCCC
Q psy12242 472 FIYKKVPETKN 482 (498)
Q Consensus 472 ~~~~~~~~~~~ 482 (498)
+..+.+++.++
T Consensus 395 i~~f~l~~~~~ 405 (412)
T PF01306_consen 395 ISAFTLKKDKK 405 (412)
T ss_dssp HHHHHS--SSS
T ss_pred HheeeecCCCc
Confidence 77776665554
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-17 Score=153.57 Aligned_cols=267 Identities=10% Similarity=0.066 Sum_probs=173.6
Q ss_pred chhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHHHHHHHHHHHHHHHhcCcccC---C-----------
Q psy12242 141 SSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLLG---T----------- 206 (498)
Q Consensus 141 ~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~---~----------- 206 (498)
.+++.+++.-++.|.|.+..++..+.++++..++|++++.+++.+.++++|..++|+++...... +
T Consensus 8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~ 87 (310)
T TIGR01272 8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAE 87 (310)
T ss_pred hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHH
Confidence 78999999999999999999999999999999999999999999999999999999974311111 0
Q ss_pred CCchhHHHHhhhHHHHHHHhhccc--ccCChhhHHHhcCCHHHHHHHHHhhcCCchhHHHHHHHHHhHHhhhcCCCchhh
Q psy12242 207 ADGWPLLLAFTLVPGIYQMITLPF--CPESPKYILLSKGQELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIPKVSLR 284 (498)
Q Consensus 207 ~~~wr~~f~~~~~~~~~~~~~~~~--~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (498)
..+|+++|++.+...++..+.+.+ +||.. +++.++ . . . + +....+
T Consensus 88 ~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~------~~~~~~----------------------~-~-~-~--~~~~~~ 134 (310)
T TIGR01272 88 AAKVHTPYLLLAGALAVLAIIFAFLPLPELQ------EADVAR----------------------V-S-S-G--DTTQKT 134 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCCC------cccccc----------------------c-c-c-c--cccchh
Confidence 147999998665554444433333 34431 000000 0 0 0 0 000112
Q ss_pred hHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHHh---hcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCce
Q psy12242 285 EMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFT---MAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKT 361 (498)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~ 361 (498)
+.+++|.. ++.....++...... ....+.+.+++ .+|+++.+.+........+.++|+++.+++.||+++|+
T Consensus 135 ~~~~~~~~----~l~~~~~f~yvg~e~-~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~ 209 (310)
T TIGR01272 135 SAFQFTHL----VLGALGIFVYVGAEV-SAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGR 209 (310)
T ss_pred hHHhhHHH----HHHHHHHHHHHHHHH-HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence 23444422 223333333222223 33444444443 25899999999999999999999999999999999988
Q ss_pred ehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHH
Q psy12242 362 LLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANF 441 (498)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~ 441 (498)
.+..+..+..+..++.... +. ... .. .....+++.....|...+...+..|++ .+++.++. ....+|++
T Consensus 210 ~l~~~~~l~~~~~~l~~~~---~~--~~~---~~-~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~ 278 (310)
T TIGR01272 210 YLAFNAFLAVLLSIGAALT---HG--YVA---MW-FVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGA 278 (310)
T ss_pred HHHHHHHHHHHHHHHHHHc---CC--HHH---HH-HHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcch
Confidence 8777666555554333221 10 111 11 122233444445577777777777754 46667775 56779999
Q ss_pred HHHHhHHHHHHhhhh
Q psy12242 442 IVGLGFLPIESIIHG 456 (498)
Q Consensus 442 ~~~~~~~~l~~~~g~ 456 (498)
+.|.+.|.+.|..+.
T Consensus 279 i~P~l~G~lad~~g~ 293 (310)
T TIGR01272 279 IVPLLQGSLADCLGI 293 (310)
T ss_pred HHHHHHHHHHHhccc
Confidence 999999999998774
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >KOG2325|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.2e-18 Score=160.39 Aligned_cols=385 Identities=14% Similarity=0.134 Sum_probs=223.8
Q ss_pred HHHHHhhhhhccccccccccCCcH-HHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy12242 32 AISASALGSSFQHGYNTGVFNAPQ-KLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATGYV 110 (498)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l 110 (498)
.+.+..+. .++.+...+++.+.. |++++ +|++......|++.++..++.+++++..|++
T Consensus 35 si~l~~~~-sfl~~v~~sI~~~s~wpYl~~-------------------lD~~A~~~ffG~viaa~slg~~i~~liF~~W 94 (488)
T KOG2325|consen 35 SIYLALLN-SFLVAVQFSIYLTSMWPYLQK-------------------LDPTATATFFGLVIAASSLGHAIFSLIFGIW 94 (488)
T ss_pred hHHHHHHH-HHHHhhhheEEEeecchhhhh-------------------cCCCCCcchhhHHHHHHHHHHHhcchhhccc
Confidence 33444444 566667776655443 65554 3344444455999999999999999999999
Q ss_pred HHhhcc-chhhHHHHHHHHHHHHHHhhhhc-cc-hhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHHHH
Q psy12242 111 AERFGR-KGGLLINNVFVVLAALLQGFSKA-FS-SYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLV 187 (498)
Q Consensus 111 ~dr~Gr-r~~l~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~ 187 (498)
..|.+. |+.++.+.++.++++++...... .+ .-+.++++|++.|+|.| ......+|+++....++|.++++....+
T Consensus 95 s~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~-n~a~lR~Y~a~~s~~~dR~rA~a~~~~~ 173 (488)
T KOG2325|consen 95 SNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVG-NFAVLRAYIADASTVEDRPRAFAATSGG 173 (488)
T ss_pred ccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcc-cHHHHHHHHHhccCccchHHHHHHhhhH
Confidence 999997 99999999999999999843222 23 57889999999999987 5677889999999999999999999998
Q ss_pred HHHHHHHHHHHhcCc-ccCCC-------C---chhHHHHhhhHHHHHHHhh-cccccCChhhHHHhcCCHHHHHHHHHhh
Q psy12242 188 ITISIVISQILGLGG-LLGTA-------D---GWPLLLAFTLVPGIYQMIT-LPFCPESPKYILLSKGQELEAQRALSWL 255 (498)
Q Consensus 188 ~~~g~~~~~~i~~~~-~~~~~-------~---~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~l~~~~~~~~~a~~~~~~~ 255 (498)
..+|..+||.++... .+.+. . .+-.+-|+.++..++.++. .++++|.++. ..+++.++
T Consensus 174 ~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~-----~~~~~~~~----- 243 (488)
T KOG2325|consen 174 FVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRG-----IIDKKKRS----- 243 (488)
T ss_pred HHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccC-----cccccccc-----
Confidence 899999998865321 11110 1 1234556666666655544 4557776432 11110000
Q ss_pred cCCchhHHHHHHHHHhHHhhhcCCCchhhhHhccccc-hhhHHHHHHHHHHHHhhchHHHHHhHHHHHhhcCCCchhHHH
Q psy12242 256 RGTIEVHDEMDEMRAEYESIKLIPKVSLREMFTNAQL-RIPLFISMTVMVAQQLSGINAVIYFSTKIFTMAQLSDTAAQW 334 (498)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 334 (498)
+ ++ ...-.+..+.++. +...+.+....+...+.....-....+.....++++..++..
T Consensus 244 -------~-----~~---------~~~~~~~~~~~~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~ 302 (488)
T KOG2325|consen 244 -------V-----EE---------EKSDIEKVKKPKLDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVL 302 (488)
T ss_pred -------c-----hh---------hccchhhhccCChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHH
Confidence 0 00 0000111112222 223455555555555555544555666666667777665544
Q ss_pred HH----HHHHHHHHHHHHhhhhhh-hccCCceehhhhhHHHHHHHHHHHHHHHHhhhh----------------------
Q psy12242 335 AT----LGMGTMNVVMTLVSLVLV-EISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIF---------------------- 387 (498)
Q Consensus 335 ~~----~~~~~~~~~~~~~~g~l~-dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------- 387 (498)
.. +..++..+.-.+...+.. .++.+|..+..++........+..........+
T Consensus 303 ~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~ 382 (488)
T KOG2325|consen 303 YNGITLSISGILSVILLLLYIFTRLGKIDKRRIILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTT 382 (488)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhhccceeeeehHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccC
Confidence 33 222222222222222222 233445555555333333332221110000000
Q ss_pred -hhHHHHHHHHHHHHHHHhcC-ccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHH
Q psy12242 388 -VMSIFCIILVIMFVVFFAVG-PGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIHGYVFTIFAVL 465 (498)
Q Consensus 388 -~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~ 465 (498)
..+............+.+.. ......+.-+|...++.+++..|+.......+..++|.+........|....+....+
T Consensus 383 ~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~ 462 (488)
T KOG2325|consen 383 TAVPLILYLISFIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLC 462 (488)
T ss_pred cccChhhheeehhheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHH
Confidence 00111111111111111111 1223455667999999999999999999999999999999998888886444444443
Q ss_pred HHH
Q psy12242 466 QAM 468 (498)
Q Consensus 466 ~~~ 468 (498)
.++
T Consensus 463 ~~l 465 (488)
T KOG2325|consen 463 LLL 465 (488)
T ss_pred HHH
Confidence 333
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.9e-16 Score=142.80 Aligned_cols=382 Identities=14% Similarity=0.155 Sum_probs=227.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-hccchhhHHHHHHHHHHHHHHhhhhccc--hhHHHHHHHHHHHhh
Q psy12242 80 IEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAER-FGRKGGLLINNVFVVLAALLQGFSKAFS--SYEMIILGRFLIGIN 156 (498)
Q Consensus 80 ~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~r~l~G~~ 156 (498)
.++++. .-+.+.|..-.-+..+++|+++|| +|+|+.+++|.++..+|.++.+.+ + +...++++-.+.++|
T Consensus 58 ~~~~~A----~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~---~~~~~~gl~i~L~~I~iG 130 (498)
T COG3104 58 FDETHA----TGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAIS---SVSGPGGLYIGLALIIVG 130 (498)
T ss_pred cChHhh----HHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhcc---ccccccHHHHHHHHHHhc
Confidence 466666 344455544455677899999999 599999999999999999999887 4 577889999999999
Q ss_pred hhhhhcchhhhhhccCccc--chhhhHhHHHHHHHHHHHHHHHHhcCcccCCCCchhHHHHhhhHHHHHHHhhcccccCC
Q psy12242 157 SGLNAGLAPMYLAEISPVH--LRGAVGTVYQLVITISIVISQILGLGGLLGTADGWPLLLAFTLVPGIYQMITLPFCPES 234 (498)
Q Consensus 157 ~g~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~ 234 (498)
.|..-+...+++.|.+|++ +|-..++++.++.++|++++|++ .+++.+..+|...|...++-....++.+...+..
T Consensus 131 ~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i--~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~ 208 (498)
T COG3104 131 TGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPII--TGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRH 208 (498)
T ss_pred cccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHH--HHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccch
Confidence 9999999999999999864 46678999999999999999994 4588889999999999877766666544433211
Q ss_pred hhhHH---HhcC-CHHHHHHHHHhh------------cCCchhHHHHHHHHHhHHhhhcCCCchhhhHhcccc---chhh
Q psy12242 235 PKYIL---LSKG-QELEAQRALSWL------------RGTIEVHDEMDEMRAEYESIKLIPKVSLREMFTNAQ---LRIP 295 (498)
Q Consensus 235 p~~l~---~~~~-~~~~a~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 295 (498)
-.... ..+. +..+.......+ ...+..........-..+. .-..+.++.++ -+++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~------~~~~~~~~~~~~~~er~r 282 (498)
T COG3104 209 VKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAI------IYFAEAFRSPKVFDERRR 282 (498)
T ss_pred hcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHhccCccHHHHHH
Confidence 00000 0000 001111000000 0000000000000000000 00001111110 0111
Q ss_pred H-------HHHHHHHHHHHhhchHHHHHhHHHHHh-h-cCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCc--ee--
Q psy12242 296 L-------FISMTVMVAQQLSGINAVIYFSTKIFT-M-AQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRK--TL-- 362 (498)
Q Consensus 296 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~--~~-- 362 (498)
+ +.....+....- ..+....+.....+ + +|++ ....+..+...+.-++.+++..++..|.+++ .+
T Consensus 283 ~~~~~~Lfl~~~iFW~~~~Q-~~ssl~~~a~~~v~~~~~g~~-vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~ 360 (498)
T COG3104 283 LLAAIPLFLFAVIFWALYEQ-MGSSLNLYADRNVNRQIFGFE-VPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPST 360 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHh-ccchHHHHHHHhhccccccee-cCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCc
Confidence 1 122222222111 12222333322222 2 2322 2345677777888888888877777774433 21
Q ss_pred ---hhhhhHHHHHHHHHHHHHHHHhh--hhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHH
Q psy12242 363 ---LLIGFMGVFVVTVLLTIVMQFVE--IFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINW 437 (498)
Q Consensus 363 ---~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~ 437 (498)
..++..++..+.+.+........ ....+..+++...++..+.....+|+..+++..+.|+...+..++.......
T Consensus 361 ~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a 440 (498)
T COG3104 361 PIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVA 440 (498)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 34555556666655555422222 2234556666677777788888889999999999999999999999888888
Q ss_pred HHHHHHHHhHHH------HHHhhh-hHHHHHHHHHHHHHHHHHHHhcc
Q psy12242 438 TANFIVGLGFLP------IESIIH-GYVFTIFAVLQAMFVLFIYKKVP 478 (498)
Q Consensus 438 ~~~~~~~~~~~~------l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~ 478 (498)
.+..++..+.+. ..+... ...|+.++.+.++.........|
T Consensus 441 ~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~ 488 (498)
T COG3104 441 AGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLLLLSP 488 (498)
T ss_pred HHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHhhH
Confidence 888888777762 222222 34666666666665555444333
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.8e-16 Score=151.84 Aligned_cols=171 Identities=15% Similarity=0.162 Sum_probs=124.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhh
Q psy12242 80 IEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGL 159 (498)
Q Consensus 80 ~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 159 (498)
.+..+. ++..+...++..++.++.|+++||+|||+.+..+.++..++.+........++...++++|++.|++.+.
T Consensus 283 ~s~~~~----~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 358 (490)
T PRK10642 283 YSEDHG----VLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNC 358 (490)
T ss_pred CCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 455554 6777888899999999999999999999998888765554433321111115677788899999988777
Q ss_pred hhcchhhhhhccCcccchhhhHhHHHHHHHHHHHHHHHHhcCcccCC-CCchhHHHHhhhHHHHHHHhhcccccCChhhH
Q psy12242 160 NAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLLGT-ADGWPLLLAFTLVPGIYQMITLPFCPESPKYI 238 (498)
Q Consensus 160 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~-~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~l 238 (498)
.......++.|.+|++.|++++++......++..++|.+. +.+.+ ..+|+.++++..+.+++.++..+++||+|+|+
T Consensus 359 ~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~--g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~ 436 (490)
T PRK10642 359 FTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLA--AWLVESTQNLMMPAYYLMVVAVIGLITGVTMKETANRP 436 (490)
T ss_pred HHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHH--HHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccCCC
Confidence 7777788899999999999999974444445555666632 23333 24577777766666666666667789999987
Q ss_pred HHhc-----CCHHHHHHHHHhhcC
Q psy12242 239 LLSK-----GQELEAQRALSWLRG 257 (498)
Q Consensus 239 ~~~~-----~~~~~a~~~~~~~~~ 257 (498)
.++ ++++|+++.+.++++
T Consensus 437 -~~~~~~~~~~~~~a~~~l~~~~~ 459 (490)
T PRK10642 437 -LKGATPAASDIQEAKEILVEHYD 459 (490)
T ss_pred -CCCccccccchhhHHHHhhcccc
Confidence 544 888999999998874
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.64 E-value=2e-17 Score=161.97 Aligned_cols=383 Identities=14% Similarity=0.105 Sum_probs=3.0
Q ss_pred hccccccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhh
Q psy12242 41 SFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGL 120 (498)
Q Consensus 41 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l 120 (498)
.+......+.+...+..+++.|+ ++..+. |++.+.+-++..+..++..++.+|..|-|.+
T Consensus 12 ~~~q~~~~g~~~~~lttiErRF~----------------l~S~~~----G~i~s~~di~~~~~~~~vsy~g~~~hrprwi 71 (539)
T PF03137_consen 12 GLFQMMVSGYVNSSLTTIERRFG----------------LSSSQS----GLISSSYDIGSLVVVLFVSYFGGRGHRPRWI 71 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC----------------CCHHHH----HHHHHHHHHHHHHHHHHHHHHhhhcCCccee
Confidence 34456677777888889999998 888888 9999999999999999999999998888999
Q ss_pred HHHHHHHHHHHHHHhhhh----cc-------------------------------------------chhHHHHHHHHHH
Q psy12242 121 LINNVFVVLAALLQGFSK----AF-------------------------------------------SSYEMIILGRFLI 153 (498)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~----~~-------------------------------------------~~~~~~~~~r~l~ 153 (498)
-.|.++.+++++++++=. .+ .-+..++++.++.
T Consensus 72 g~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~ 151 (539)
T PF03137_consen 72 GIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLI 151 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eecHHHHHHHHHHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHH
Confidence 999999999999886510 00 0135678899999
Q ss_pred HhhhhhhhcchhhhhhccCcccchhhhHhHHHHHHHHHHHHHHHHhcCcccC------------------CCC----chh
Q psy12242 154 GINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLLG------------------TAD----GWP 211 (498)
Q Consensus 154 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~------------------~~~----~wr 211 (498)
|+|....++...+|+-|..++++-+..+|+......+|.++|.+++. ... ++. .|.
T Consensus 152 GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~--~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWW 229 (539)
T PF03137_consen 152 GIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGS--FCLRIYVDFPKVPPDGVGITPSDPRWVGAWW 229 (539)
T ss_dssp SSS-----------------------------------------------------------------------------
T ss_pred hccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHH--HHHhceeCCccccccCCCCCCCCccHHHHHH
Confidence 99999999999999999999999999999999999999999988542 211 011 254
Q ss_pred HHHHhhhHHHHHHHhhcccccCChhhHHHhcCCHHHHHHHHHhhcCCchhHHHHHHHHHhHHhhhcCCCchhhhHhcccc
Q psy12242 212 LLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIPKVSLREMFTNAQ 291 (498)
Q Consensus 212 ~~f~~~~~~~~~~~~~~~~~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (498)
.-|++.+.+.++..+.++++|+.-+. .++..++.+...++.......+...++..+.....-+.-....+.+++||.
T Consensus 230 LGfli~g~~~~l~aipl~~FPk~lp~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~ 306 (539)
T PF03137_consen 230 LGFLICGILLFLSAIPLFFFPKKLPG---TSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPV 306 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHcCCccCCC---cccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChH
Confidence 55555555555555555555554211 100111100000000000000000000000000111112234566777764
Q ss_pred chhhHHHHHHHHHHHHhhchHHHHHhHHHHH-hhcCCCchhHHHHHHHHHH-HHHHHHHhhhhhhhccC--Cceehhhhh
Q psy12242 292 LRIPLFISMTVMVAQQLSGINAVIYFSTKIF-TMAQLSDTAAQWATLGMGT-MNVVMTLVSLVLVEISG--RKTLLLIGF 367 (498)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~g--~~~~~~~~~ 367 (498)
+ +...+...........+..+.|.++ .+++.++.++.++.....+ +..+|.+++|++.+|++ .|+.+....
T Consensus 307 f-----~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~ 381 (539)
T PF03137_consen 307 F-----MCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCI 381 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHH
Confidence 3 3333333333334455556666555 5779999988887755544 67789999999999975 344443333
Q ss_pred HHHHHHHHH---HHHH-----------HHHh------h-h----------------------h---hhHHH-HHHHHHHH
Q psy12242 368 MGVFVVTVL---LTIV-----------MQFV------E-I----------------------F---VMSIF-CIILVIMF 400 (498)
Q Consensus 368 ~~~~~~~~~---~~~~-----------~~~~------~-~----------------------~---~~~~~-~~~~~~~~ 400 (498)
+...+..+. +.+. ..+. . . . ..... .++..++.
T Consensus 382 v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~ 461 (539)
T PF03137_consen 382 VVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFIL 461 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHH
Confidence 333333222 1110 0010 0 0 0 00111 11111222
Q ss_pred HHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHH-HHHHHHHHhHHHHHHhh
Q psy12242 401 VVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINW-TANFIVGLGFLPIESII 454 (498)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~-~~~~~~~~~~~~l~~~~ 454 (498)
.........|... ..-..+|+++|+.+.|+...+.+ +|.+-+|.++|.+.|..
T Consensus 462 ~~~~~~~~~p~~~-i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~t 515 (539)
T PF03137_consen 462 SFFTFMSQVPSTL-ITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDST 515 (539)
T ss_dssp -------------------------------------------------------
T ss_pred HHHHHhcccchhe-eeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence 2222223333333 44488899999999999987766 57788999999998864
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG3626|consensus | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.5e-14 Score=140.02 Aligned_cols=307 Identities=18% Similarity=0.173 Sum_probs=200.0
Q ss_pred HHHHHHhhhhhccccccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy12242 31 FAISASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATGYV 110 (498)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l 110 (498)
..+.+.++. .+..++..+.+...+..+++.|+ ++..+. |++.+.+-++..+...+..+.
T Consensus 97 ~fl~~l~~~-~~~q~l~~~y~~s~IttiErRF~----------------i~Ss~s----G~I~s~~dig~~l~i~fVsYf 155 (735)
T KOG3626|consen 97 MFLVLLSLA-AFAQGLYVGYFNSVITTIERRFK----------------ISSSQS----GLIASSYDIGNLLLIIFVSYF 155 (735)
T ss_pred hHHHHHHHH-HHHHHhhhhhhhhhhhhhhhhcC----------------CCCCcc----eeEeeecccchhhhhHhHHHh
Confidence 344455555 56777777888888888999888 788888 999999999999999999999
Q ss_pred HHhhccchhhHHHHHHHHHHHHHHhhhh-------------------c---------------------------cc---
Q psy12242 111 AERFGRKGGLLINNVFVVLAALLQGFSK-------------------A---------------------------FS--- 141 (498)
Q Consensus 111 ~dr~Grr~~l~~~~~~~~~~~~~~~~~~-------------------~---------------------------~~--- 141 (498)
.-|.-|-+.+-+|+++++++++++++=. . ..
T Consensus 156 G~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (735)
T KOG3626|consen 156 GSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSY 235 (735)
T ss_pred ccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCch
Confidence 9999999999999999999999987630 0 00
Q ss_pred hhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHHHHHHHHHHHHHHHhcC--cccCC-----------C-
Q psy12242 142 SYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLG--GLLGT-----------A- 207 (498)
Q Consensus 142 ~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~--~~~~~-----------~- 207 (498)
-+..++++.++.|+|....++...+|+-|...+++-+..+|+......+|.++|.+++-. .+..+ .
T Consensus 236 ~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DP 315 (735)
T KOG3626|consen 236 PFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDP 315 (735)
T ss_pred hHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCc
Confidence 022567789999999999999999999999999999999999999999999999886521 00000 0
Q ss_pred ---CchhHHHHhhhHHHHHHHhhcccccCChhhHHHhcCCHHHHHHHHHhhcCCchhHHHHHHHHHhHHhhhcCCCchhh
Q psy12242 208 ---DGWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIPKVSLR 284 (498)
Q Consensus 208 ---~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (498)
..|..-|++.+.+.++..+.++++|...+. ..++.++ +..+..+.+.+...+... ..+.-+.-....+
T Consensus 316 rWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~----~~~~~~~-~~~~~~k~~~~~~~~~~~----~~~~ikdfp~s~~ 386 (735)
T KOG3626|consen 316 RWIGAWWLGFLICGALLLFSAVPLFFFPKELPK----SQKRKRA-RDLHVLKTESGGAKSDKT----FGKKIKDFPKSIK 386 (735)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhCcccCcc----ccccchh-hhhcccccccccccCCcc----hhhhHHHHHHHHH
Confidence 126666777777777766667777665321 1111000 000000000000000000 0000001122456
Q ss_pred hHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHH-hhcCCCchhHHHHHHHHHH-HHHHHHHhhhhhhhccCC--c
Q psy12242 285 EMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIF-TMAQLSDTAAQWATLGMGT-MNVVMTLVSLVLVEISGR--K 360 (498)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~g~--~ 360 (498)
.+++||. ++...+........+..+..|.|-++ +++|.++..+..+....++ +..+|.+++|++.+|+.. |
T Consensus 387 ~ll~N~i-----f~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r 461 (735)
T KOG3626|consen 387 RLLSNPI-----FMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSAR 461 (735)
T ss_pred HHhcCch-----HHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHH
Confidence 6777763 33333333333334455555555555 6789999999888755554 566888899999998753 4
Q ss_pred eehhhhhHHHHH
Q psy12242 361 TLLLIGFMGVFV 372 (498)
Q Consensus 361 ~~~~~~~~~~~~ 372 (498)
....+..+...+
T Consensus 462 ~~a~~~~~~~~l 473 (735)
T KOG3626|consen 462 GAAKFVIVCSVL 473 (735)
T ss_pred HHHHHHHHHHHH
Confidence 444333333333
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.5e-12 Score=117.49 Aligned_cols=325 Identities=14% Similarity=0.051 Sum_probs=202.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhc-----cchhh-HHHHHHHHHHHHHHhhhhc--cc--------h-hH--HHHHHH
Q psy12242 90 AVAVSIFCAGGIIGGAATGYVAERFG-----RKGGL-LINNVFVVLAALLQGFSKA--FS--------S-YE--MIILGR 150 (498)
Q Consensus 90 g~~~s~~~~~~~~~~~~~g~l~dr~G-----rr~~l-~~~~~~~~~~~~~~~~~~~--~~--------~-~~--~~~~~r 150 (498)
+.+.++..+.. ...+.+|+.+|+.+ ||..+ ..|.++...+..+..++.. .. . .+ ...+..
T Consensus 18 ~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g~~~a~l~F 96 (403)
T PF03209_consen 18 ALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLGLALAALAF 96 (403)
T ss_pred HHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHH
Confidence 77777776654 46889999999999 88655 4555555555555444310 01 1 12 344567
Q ss_pred HHHHhhhhhhhcchhhhhhccCcccchhhhHhHHHHHHHHHHHHHHHHhcCcccCCCCchhHHHHhhhHH--HHHHHhhc
Q psy12242 151 FLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLLGTADGWPLLLAFTLVP--GIYQMITL 228 (498)
Q Consensus 151 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~wr~~f~~~~~~--~~~~~~~~ 228 (498)
.+.|+|.+...+...++++|..|+|+|+++.++.....-+|.+++..+ .+..+.+...-|..-.+.... .+...++.
T Consensus 97 ~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~-~g~lL~~~s~~rL~~v~~~~a~i~~~l~~ia 175 (403)
T PF03209_consen 97 LLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIV-FGRLLDPFSPERLIQVIQGVALIALLLNLIA 175 (403)
T ss_pred HHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHH-HHHHccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999885 223343333333333333222 22222222
Q ss_pred ccccCChhhHHHhcCCHHHHHHHHHhhcCCchhHHHHHHHHHhHHhhhcCCCchhhhHhccccchhhHHHHHHHHHHHHh
Q psy12242 229 PFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQL 308 (498)
Q Consensus 229 ~~~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (498)
.+=.|+... ++. +..++++......++++..+|+.++.+...+.....
T Consensus 176 ~wg~E~r~~-----~~~------------------------~~~~~~~~~f~~a~~~~~~~~~a~~f~~fl~l~t~a--- 223 (403)
T PF03209_consen 176 LWGQEPRRS-----RRA------------------------AAAERPRPPFREAWRQVWASPQARRFFVFLFLGTLA--- 223 (403)
T ss_pred HHhcccCCc-----ccc------------------------cCCCCCCccHHHHHHHHHhCCChhHHHHHHHHHHHH---
Confidence 232332110 000 000011111223456666777665443332222222
Q ss_pred hchHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhh-ccCCceehhhhhHHHHHHHHHHHHHHHHhhhh
Q psy12242 309 SGINAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVE-ISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIF 387 (498)
Q Consensus 309 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (498)
....-...-||--+.+|++..+..-+....+.+.++|-...+++.. |.++++....++....+++..+.......+.
T Consensus 224 -~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~- 301 (403)
T PF03209_consen 224 -FFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSP- 301 (403)
T ss_pred -HHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccc-
Confidence 1122344456666788999999999999999999999999888766 6777777778888888777776655433221
Q ss_pred hhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q psy12242 388 VMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESII 454 (498)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~ 454 (498)
+.....++++.+..+.+. .-..+.+.++.+++..|..+|.....+.+...++..+.|.+.|..
T Consensus 302 ~~~~~~~~l~G~g~G~f~----vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~ 364 (403)
T PF03209_consen 302 WLFRPGVFLLGLGNGLFT----VGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLV 364 (403)
T ss_pred hHHHHHHHHHHHhhhHHH----HHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222222222222222 222334557878888999999999999999999999999988754
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.58 E-value=8e-15 Score=119.05 Aligned_cols=136 Identities=26% Similarity=0.447 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhhccC
Q psy12242 93 VSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEIS 172 (498)
Q Consensus 93 ~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~ 172 (498)
.+.+.++..+++++.|++.||+|||+.+..+..+..++.+..... ++++.+.+.+++.|++.+...+...+++.|.+
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 80 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS---SNITVLIIARFLQGFGAAFALVAGAALIADIY 80 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHC
Confidence 345677888999999999999999999999999999999988888 88999999999999999999999999999999
Q ss_pred cccchhhhHhHHHHHHHHHHHHHHHHhcCcccCCCCchhHHHHhhhHHHHHHHhhc-ccccC
Q psy12242 173 PVHLRGAVGTVYQLVITISIVISQILGLGGLLGTADGWPLLLAFTLVPGIYQMITL-PFCPE 233 (498)
Q Consensus 173 ~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e 233 (498)
|+++|++..++.+....+|..+++.+ .+.+.+..+|++.+++.++..++..+.. ++.||
T Consensus 81 ~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 81 PPEERGVALGLMSAGIALGPLLGPPL--GGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred ChhhhhHHHHHHHHhHHHHHHHhHHh--HHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 99999999999999999999999984 4466677899999988877666555443 34454
|
|
| >KOG2816|consensus | Back alignment and domain information |
|---|
Probab=99.57 E-value=1e-13 Score=132.38 Aligned_cols=319 Identities=19% Similarity=0.171 Sum_probs=207.5
Q ss_pred HHHHHHHHHHHhHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhh--hhhhhcchhhhhhccC
Q psy12242 95 IFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGIN--SGLNAGLAPMYLAEIS 172 (498)
Q Consensus 95 ~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~--~g~~~~~~~~~i~~~~ 172 (498)
...+...+.++..|.++||||||..+........+..+...+. . +|.++ +.|+. .+.......++++|..
T Consensus 70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~---~-~~~~~----~~~l~g~~~~~~s~~~a~vadis 141 (463)
T KOG2816|consen 70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQ---G-YWFFL----LLGLSGGFSAIFSVGFAYVADIS 141 (463)
T ss_pred hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHH---H-HHHhh----hcccccchhhhhhhhhhheeecc
Confidence 3467778899999999999999999999999999988888886 3 44444 44432 2346777889999999
Q ss_pred cccchhhhHhHHHHHHHHHHHHHHHHhcCcccCCCCchhHHHHhhhHHHHHHHh-hcccccCChhhHHHhcCCHHHHHHH
Q psy12242 173 PVHLRGAVGTVYQLVITISIVISQILGLGGLLGTADGWPLLLAFTLVPGIYQMI-TLPFCPESPKYILLSKGQELEAQRA 251 (498)
Q Consensus 173 ~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~e~p~~l~~~~~~~~~a~~~ 251 (498)
..++|....++.......+..++|. .++......+.-.+|.+..+..++..+ ...++||+- ++++.+++ .
T Consensus 142 ~~~~R~~~~gll~~~~~~~~~~~p~--~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl-----~~~~~~~~--~ 212 (463)
T KOG2816|consen 142 SEEERSSSIGLLSGTFGAGLVIGPA--LGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESL-----QEKERSDA--T 212 (463)
T ss_pred chhHHHHHHHHHHHHHHHHHhHHHH--HHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccccc-----Cccccccc--c
Confidence 9999999999999999999999999 445666667888889888877777665 456688882 22222110 0
Q ss_pred HHhhcCCchhHHHHHHHHHhHHhhhcCCCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHH-HhHHHHHhhcCCCch
Q psy12242 252 LSWLRGTIEVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVI-YFSTKIFTMAQLSDT 330 (498)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~ 330 (498)
.+...... ..+......+....+ ....+..+..+...+........... ...-+....++++..
T Consensus 213 ~~~~~~~~--------------~~~~~~~~~~~~~~~-~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~ 277 (463)
T KOG2816|consen 213 LRELTPGS--------------LDSSHVADAFQSLTK-VGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKK 277 (463)
T ss_pred ccccCCCc--------------ccchhhhhhhhhhcc-cCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHH
Confidence 00000000 000000011111111 11111222222222211110000001 111112245699999
Q ss_pred hHHHHHHHHHHHHHHHHHhhh-hhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCcc
Q psy12242 331 AAQWATLGMGTMNVVMTLVSL-VLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPG 409 (498)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~g-~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (498)
+.+.+.+..+....++.++.. .+...++.|+....+.....+....+.+.... |..+. ......+.....
T Consensus 278 ~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~----w~~~~-----~~v~~~~~~~~~ 348 (463)
T KOG2816|consen 278 EFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATET----WMMFA-----AGVVVALAGIVF 348 (463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccc----hhhhH-----HHHHHHhhcchh
Confidence 999898888988888888876 67777888888888887777777777664221 12111 122223334445
Q ss_pred chhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q psy12242 410 SIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESII 454 (498)
Q Consensus 410 ~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~ 454 (498)
|...+..+...+++.+|++.++...+..+.+.++|.+.+.+...+
T Consensus 349 pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~t 393 (463)
T KOG2816|consen 349 PAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFALT 393 (463)
T ss_pred HHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 777788888889999999999999999999999999999886654
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.6e-13 Score=128.46 Aligned_cols=359 Identities=12% Similarity=0.070 Sum_probs=209.6
Q ss_pred cHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh-----ccchhhHHHHHHHH
Q psy12242 54 PQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERF-----GRKGGLLINNVFVV 128 (498)
Q Consensus 54 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-----Grr~~l~~~~~~~~ 128 (498)
..+.++++++ +++.+. ....++..+...+ -++.|.++|-+ .||+-++++.++..
T Consensus 12 ~~~~l~~~l~----------------ls~~~~----~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~ 70 (433)
T PF03092_consen 12 IYPFLKDDLG----------------LSPAQL----QRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGA 70 (433)
T ss_pred HHHHHHHHcC----------------CCHHHH----HHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHH
Confidence 4577888888 888887 6666777776655 47899999975 24555666777776
Q ss_pred HHHHHHhhhhc-cchhHHHHHHHHHHHhhhhhhhcchhhhhhccCc--ccchhhhHhHHHHHHHHHHHHHHHHhcCcccC
Q psy12242 129 LAALLQGFSKA-FSSYEMIILGRFLIGINSGLNAGLAPMYLAEISP--VHLRGAVGTVYQLVITISIVISQILGLGGLLG 205 (498)
Q Consensus 129 ~~~~~~~~~~~-~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~ 205 (498)
++.+..+..+. ..+.....+.-++..+|......++.+++.|... ++.||...+.......+|.+++.. +++.+.
T Consensus 71 ~~~~~~~~~~~~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~--l~G~l~ 148 (433)
T PF03092_consen 71 VSALVLALLPASESSAAIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSL--LSGPLL 148 (433)
T ss_pred HHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHH--hhhhhh
Confidence 66666665432 2356667777888999999999999999999984 344788888888889999999988 556778
Q ss_pred CCCchhHHHHhhhHHHHHHHhhccc-ccCChhhHHHhcCCHHHHHHHHHhhcCCchhHHHHHHHHHhHHhhhcCCCchhh
Q psy12242 206 TADGWPLLLAFTLVPGIYQMITLPF-CPESPKYILLSKGQELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIPKVSLR 284 (498)
Q Consensus 206 ~~~~wr~~f~~~~~~~~~~~~~~~~-~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (498)
+..++|..|.+.+++..+..+..++ .+|.+ .+.+++.. ....+ +....... .++.....+
T Consensus 149 ~~~~~~~~f~i~~~~~~l~~~~~~~~~~e~~-----~~~~~~~~-----~~~~~-~~~~~~~~--------~~~~~~~l~ 209 (433)
T PF03092_consen 149 DSFGPQGVFLISAALPLLMLIVALFLLEERK-----VRPADEVF-----SFGKE-EVPCLFGS--------FREQLSELW 209 (433)
T ss_pred hcCCCeEEehHHHHHHHHHHHHHHHhhhhcc-----ccccchhh-----ccccc-ccchhhHH--------HHHHHHHHH
Confidence 8889999998887766666544444 44321 01100000 00000 00000000 001112455
Q ss_pred hHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehh
Q psy12242 285 EMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLL 364 (498)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~ 364 (498)
+.++.+..++..+...+.+............++........++++...+....+..++.++|..+......+..-|+++.
T Consensus 210 ~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~fy~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~ 289 (433)
T PF03092_consen 210 RALQQRAIWQPILFFIFFFNLPPSISSASSFYFQTDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFV 289 (433)
T ss_pred HHHhhhHHHHHHHHHHHHHHhccCCCCccEEEEEeccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 66666655555442111111110000000111211111122378877777777777888888888777766667676665
Q ss_pred hhhHHHHHHHHHHHHHHHHhh--h-hhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHH
Q psy12242 365 IGFMGVFVVTVLLTIVMQFVE--I-FVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANF 441 (498)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~ 441 (498)
...++..+..+.-.......+ . ....+..+.--.+..........|. ..+++|+.|+...|+.+++...+.++|..
T Consensus 290 ~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~~~i~~mP~-lvl~a~lcP~G~Egt~yall~s~~Nlg~~ 368 (433)
T PF03092_consen 290 VTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVIGMIAFMPS-LVLAARLCPKGSEGTVYALLASFSNLGSS 368 (433)
T ss_pred HHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHHHHHHHHHH-HHHHHHHCCCCchHHHHHHHHHHHHHHHH
Confidence 555444433222110000000 0 0000111111111122222222233 33567999999999999999999999999
Q ss_pred HHHHhHHHHHHhhh
Q psy12242 442 IVGLGFLPIESIIH 455 (498)
Q Consensus 442 ~~~~~~~~l~~~~g 455 (498)
++..+...+.+..+
T Consensus 369 ~s~~lg~~l~~~~~ 382 (433)
T PF03092_consen 369 VSSTLGAFLMELFG 382 (433)
T ss_pred HHHHHHHHHHHHcC
Confidence 99999998887665
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=3e-12 Score=123.06 Aligned_cols=159 Identities=13% Similarity=0.039 Sum_probs=113.4
Q ss_pred HHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHH
Q psy12242 313 AVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIF 392 (498)
Q Consensus 313 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (498)
...+.++++.+++|++..+.++..+...+..+++.+..|+++||+|||+.+..+.....++.+.+.+... .+.
T Consensus 26 ~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~-------~~~ 98 (395)
T PRK10054 26 TLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNN-------VTL 98 (395)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhH-------HHH
Confidence 3344555566778999999999999999999999999999999999999988888777766665544321 111
Q ss_pred HHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh-HHHHHHHHHHHHHHH
Q psy12242 393 CIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIHG-YVFTIFAVLQAMFVL 471 (498)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~-~~~~~~~~~~~~~~~ 471 (498)
.+. .....+.......+....+..|..|++.|+++.|+.+...++|..++|.+.+.+.+ .++ ..+...+++.++..+
T Consensus 99 ~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i 176 (395)
T PRK10054 99 VVL-FFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLV 176 (395)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHH
Confidence 111 12222222223346667788899999999999999999999999999999998875 454 456655555555544
Q ss_pred HHHHhccCC
Q psy12242 472 FIYKKVPET 480 (498)
Q Consensus 472 ~~~~~~~~~ 480 (498)
+.....++.
T Consensus 177 ~~~~~~~~~ 185 (395)
T PRK10054 177 FIQIWVQRS 185 (395)
T ss_pred HHHHHHhcc
Confidence 444444443
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.2e-13 Score=127.94 Aligned_cols=144 Identities=19% Similarity=0.225 Sum_probs=117.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhh
Q psy12242 80 IEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGL 159 (498)
Q Consensus 80 ~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 159 (498)
.++.+. +++.+...++..++.+++|+++||+|||+.+..+.....+........ ++.+.+++.+++.+++.+.
T Consensus 249 ~~~~~~----g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~l~~~~~g~ 321 (393)
T PRK15011 249 LPEKLA----GVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMA---HSPAILLGLQLLNAIYIGI 321 (393)
T ss_pred CCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHH
Confidence 566666 777777778888899999999999999998887776666555544455 7788888899999888887
Q ss_pred hhcchhhhhhccCcccchhhhHhHHHHHHHHHHHHHHHHhcCcccCCCCchhHHHHhhhHHHHHHHhhcccccC
Q psy12242 160 NAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLLGTADGWPLLLAFTLVPGIYQMITLPFCPE 233 (498)
Q Consensus 160 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 233 (498)
..+....+..|..|+ +|+++.++.+...++|..+++. .++.+.+..+|+..|++.+++.++.++..++.||
T Consensus 322 ~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~--l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 322 LGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGS--LAGIVAEIWNYHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHH--HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 777778888999984 6899999999999999999999 4457777789999999888888877777766665
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.6e-12 Score=123.18 Aligned_cols=178 Identities=10% Similarity=-0.016 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHhhchHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHH
Q psy12242 297 FISMTVMVAQQLSGINAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVL 376 (498)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~ 376 (498)
+......+..+..-.....+..|.+.+++|.+..+.++..+...++..++.+..|++.||+|||+.+..+.++..++.+.
T Consensus 10 ~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~ 89 (412)
T TIGR02332 10 IIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTA 89 (412)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 33333333344444455566677788999999999999999999999999999999999999999998888888877777
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHh---
Q psy12242 377 LTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESI--- 453 (498)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~--- 453 (498)
..+. .+...+...-++.+.......+....++.|.+|+++|+++.++.+....+|..+++.+.+.+.+.
T Consensus 90 ~~~~--------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 161 (412)
T TIGR02332 90 TMFA--------TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGL 161 (412)
T ss_pred HHHh--------cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 6553 12222233333444444444566677889999999999999999999999999999999988752
Q ss_pred ---hhh-HHHHHHHHHHHHHHHHHHHhccCCCC
Q psy12242 454 ---IHG-YVFTIFAVLQAMFVLFIYKKVPETKN 482 (498)
Q Consensus 454 ---~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (498)
.+| +.+.+.++..++...+.+++.||+++
T Consensus 162 ~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~ 194 (412)
T TIGR02332 162 MALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD 194 (412)
T ss_pred CCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence 455 45555566666655566666777653
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.9e-12 Score=122.40 Aligned_cols=164 Identities=16% Similarity=0.097 Sum_probs=123.1
Q ss_pred hHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhH
Q psy12242 311 INAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMS 390 (498)
Q Consensus 311 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (498)
........|.+.+++|.++.+.++..+...++..++.++.|++.||+|||+.+..+..+..++.+..... ..
T Consensus 21 ~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~--------~~ 92 (385)
T TIGR00710 21 IDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALS--------NN 92 (385)
T ss_pred HHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH--------cc
Confidence 3444455677888899999999999999999999999999999999999999988887777776665543 11
Q ss_pred HHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhH-HHHHHHHHHHHH
Q psy12242 391 IFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIHGY-VFTIFAVLQAMF 469 (498)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~~-~~~~~~~~~~~~ 469 (498)
...+.....+.+.......+....+..|.+|+++|++..++.+....++..+++.+.+.+.+..++. .+.+.+++.++.
T Consensus 93 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ 172 (385)
T TIGR00710 93 IETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILL 172 (385)
T ss_pred HHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 2222222333333333344667778899999999999999999999999999999999998887763 555556666665
Q ss_pred HHHHHHhccCCCC
Q psy12242 470 VLFIYKKVPETKN 482 (498)
Q Consensus 470 ~~~~~~~~~~~~~ 482 (498)
.++.+...||+++
T Consensus 173 ~~~~~~~~~~~~~ 185 (385)
T TIGR00710 173 SALIFFILPETLP 185 (385)
T ss_pred HHHHHHhCCCCCC
Confidence 5555555666543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.9e-12 Score=127.60 Aligned_cols=161 Identities=16% Similarity=0.052 Sum_probs=117.8
Q ss_pred HHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHH
Q psy12242 312 NAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSI 391 (498)
Q Consensus 312 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (498)
..+....|.+.++.|.+..+.+++.+...++.+++.++.|+++||+|||+.++++.++..++.++..+. ..+
T Consensus 184 ~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa--------~s~ 255 (742)
T TIGR01299 184 FVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFV--------QGY 255 (742)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH--------hhH
Confidence 345566777778889999999999999999999999999999999999999988887777766665542 122
Q ss_pred HHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhh-------------hHH
Q psy12242 392 FCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIH-------------GYV 458 (498)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g-------------~~~ 458 (498)
..+++.-++.+++..+..+...+++.|.+|++.|++..++.+.+..+|.++++.+...+....+ |..
T Consensus 256 ~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~ 335 (742)
T TIGR01299 256 GFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRV 335 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHH
Confidence 2223333344444444457888899999999999999999999999999999887766654332 333
Q ss_pred HHHHHHHHHHHHHHHHHhccCC
Q psy12242 459 FTIFAVLQAMFVLFIYKKVPET 480 (498)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~ 480 (498)
++.+.++..+..++..+++||+
T Consensus 336 l~~i~~lp~ll~ll~~~~lPES 357 (742)
T TIGR01299 336 FVIVCAFPCVFAIGALTFMPES 357 (742)
T ss_pred HHHHHHHHHHHHHHHHHHcCCC
Confidence 3444444444445555667775
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=4e-12 Score=123.94 Aligned_cols=159 Identities=13% Similarity=0.096 Sum_probs=118.9
Q ss_pred HHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHH
Q psy12242 313 AVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIF 392 (498)
Q Consensus 313 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (498)
......|.+.+++|.+..+.++..+...++..++.++.|++.||+|||+.+..+..+..++.+...... +..
T Consensus 41 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--------~~~ 112 (434)
T PRK11663 41 SFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSS--------SLW 112 (434)
T ss_pred hHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHh--------HHH
Confidence 456667888888999999999999999999999999999999999999999888888887776665431 122
Q ss_pred HHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhH-HHHHHHHHHHHHHH
Q psy12242 393 CIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIHGY-VFTIFAVLQAMFVL 471 (498)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~~-~~~~~~~~~~~~~~ 471 (498)
.+....++.+.......+....++.|.+|+++|++++|+.+....+|..+++.+.+.+.+..++. .+.+.+++.++..+
T Consensus 113 ~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~ 192 (434)
T PRK11663 113 AFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGL 192 (434)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 22222222223223334666778889999999999999999999999999999999999888874 45555555554444
Q ss_pred HHHHhccC
Q psy12242 472 FIYKKVPE 479 (498)
Q Consensus 472 ~~~~~~~~ 479 (498)
+..++.+|
T Consensus 193 ~~~~~~~~ 200 (434)
T PRK11663 193 FLCWRLRD 200 (434)
T ss_pred HHHHHcCC
Confidence 44444454
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-11 Score=119.31 Aligned_cols=159 Identities=14% Similarity=0.029 Sum_probs=120.0
Q ss_pred HHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHH
Q psy12242 314 VIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFC 393 (498)
Q Consensus 314 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (498)
.....|.+.+++|.++.+.++..+...++..++.+..|++.||+|||+.+..+..+..++.+...+.. ++..
T Consensus 28 ~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--------~~~~ 99 (390)
T PRK03545 28 PVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAW--------NFTV 99 (390)
T ss_pred HHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhc--------cHHH
Confidence 33446778889999999999999999999999999999999999999999998888887776665531 2222
Q ss_pred HHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh-HHHHHHHHHHHHHHHH
Q psy12242 394 IILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIHG-YVFTIFAVLQAMFVLF 472 (498)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~-~~~~~~~~~~~~~~~~ 472 (498)
+...-+..+.......+....+..|.+|+++|++++|+......++..++|.+.+.+.+..++ ..+++.++++++....
T Consensus 100 l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~ 179 (390)
T PRK03545 100 LLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLL 179 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHH
Confidence 222222333333333466667888999999999999999999999999999999999888886 4566666666665555
Q ss_pred HHHhccCC
Q psy12242 473 IYKKVPET 480 (498)
Q Consensus 473 ~~~~~~~~ 480 (498)
.+...|+.
T Consensus 180 ~~~~~~~~ 187 (390)
T PRK03545 180 LIKLLPLL 187 (390)
T ss_pred HHHhCCCC
Confidence 55555554
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.3e-11 Score=113.80 Aligned_cols=177 Identities=17% Similarity=0.034 Sum_probs=146.1
Q ss_pred hhhHHHHHHHHHHHHhhchHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHH
Q psy12242 293 RIPLFISMTVMVAQQLSGINAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFV 372 (498)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~ 372 (498)
+.+++......+..... -+...-..|.+-+++|.|...+|...+.+..+..++.++...+.||+.||+++.....++.+
T Consensus 12 ~~~l~aLa~~~F~igtt-Efv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~ 90 (394)
T COG2814 12 WLALLALALAAFAIGTT-EFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIV 90 (394)
T ss_pred hHHHHHHHHHHHHHHhH-HHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 33444444444443333 34556667888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy12242 373 VTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIES 452 (498)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~ 452 (498)
+.++..+. +++..+...=+..+.....+.++..+...++.|+++|+++.++......++..+|..+..++-|
T Consensus 91 ~n~l~alA--------p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~ 162 (394)
T COG2814 91 SNLLSALA--------PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQ 162 (394)
T ss_pred HHHHHHHh--------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 98888774 4444555555555555555668888899999999999999999999999999999999999999
Q ss_pred hhhh-HHHHHHHHHHHHHHHHHHHhcc
Q psy12242 453 IIHG-YVFTIFAVLQAMFVLFIYKKVP 478 (498)
Q Consensus 453 ~~g~-~~~~~~~~~~~~~~~~~~~~~~ 478 (498)
.+|| ..|+..+.+.++..+..+..+|
T Consensus 163 ~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 163 LFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9998 6889999999999888888888
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.1e-11 Score=119.19 Aligned_cols=156 Identities=15% Similarity=0.099 Sum_probs=118.2
Q ss_pred hHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q psy12242 317 FSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIIL 396 (498)
Q Consensus 317 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (498)
..|.+.+++|.++.+.+...+...++..++.++.|++.||+|||+.+..+..+.+++.+...+. .+...+..
T Consensus 42 ~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~ 113 (394)
T PRK10213 42 LLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFA--------NSFSLLLI 113 (394)
T ss_pred hHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHH--------ChHHHHHH
Confidence 4566778899999999999999999999999999999999999999999998888876665442 12222223
Q ss_pred HHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh-HHHHHHHHHHHHHHHHHHH
Q psy12242 397 VIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIHG-YVFTIFAVLQAMFVLFIYK 475 (498)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~-~~~~~~~~~~~~~~~~~~~ 475 (498)
.-...+.......+....++.|.+|+++|+++.++......++..++|.+.+.+.+..++ ..+++.++++++..++...
T Consensus 114 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~ 193 (394)
T PRK10213 114 GRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIK 193 (394)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334567777889999999999999999999999999999999999998887 4555555555544444444
Q ss_pred hccCC
Q psy12242 476 KVPET 480 (498)
Q Consensus 476 ~~~~~ 480 (498)
..||.
T Consensus 194 ~~p~~ 198 (394)
T PRK10213 194 SLPSL 198 (394)
T ss_pred HCCCC
Confidence 45654
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.43 E-value=3e-11 Score=111.88 Aligned_cols=341 Identities=12% Similarity=0.101 Sum_probs=200.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhh
Q psy12242 80 IEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGL 159 (498)
Q Consensus 80 ~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 159 (498)
.++.|+. .-+.-...-.+....++...+.|..|.|++++++.+...+...+..+. ++...+-+..++-|++.+
T Consensus 37 ~T~~qv~---~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~---~sv~~mq~~q~~yg~~~a- 109 (412)
T PF01770_consen 37 FTEEQVN---NEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFG---TSVLAMQLMQFFYGLATA- 109 (412)
T ss_pred CCHHHHH---HhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH---CcHHHHHHHHHHHHHHHH-
Confidence 6666653 334455556667788899999999999999999999999999999998 999999999999999987
Q ss_pred hhcchhhhhhccCcccchhhhHhHHHHHHHHHHHHHHHHhcCcccCCCCchhHHHHhhhHHHHHHHhhcccccCChhhHH
Q psy12242 160 NAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLLGTADGWPLLLAFTLVPGIYQMITLPFCPESPKYIL 239 (498)
Q Consensus 160 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~l~ 239 (498)
...+..+++-...|+++-.++.+...+...+|..++.+++-.....+..+++...++......++++..+++|..++...
T Consensus 110 ~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~S~~ 189 (412)
T PF01770_consen 110 AEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPKRSLF 189 (412)
T ss_pred HHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCcccc
Confidence 47778889999999999889998888888888777777542112234567788888877777777777778887765331
Q ss_pred HhcCCHHHHHHHHHhhcCCc-hhHHHHH-HHHHhHHhhhc-------CCCchhhhHhccccchhhHHHHHHHHHHHHhhc
Q psy12242 240 LSKGQELEAQRALSWLRGTI-EVHDEMD-EMRAEYESIKL-------IPKVSLREMFTNAQLRIPLFISMTVMVAQQLSG 310 (498)
Q Consensus 240 ~~~~~~~~a~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (498)
..++..++.. ..+...+. +..++.. +.+++.+..+. .-...+++..+++. ++...++.....++
T Consensus 190 f~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~-----ll~WSlWWa~atcg 262 (412)
T PF01770_consen 190 FHRKPPAEQD--ANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPR-----LLLWSLWWAFATCG 262 (412)
T ss_pred eeccCccccc--cccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCch-----HHHHHHHHHHHHhH
Confidence 1111111100 00000000 0000000 00000000000 01123344445543 33333444445556
Q ss_pred hHHHHHhHHHHHhhc---CCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHH--HHHHHHHHHHHHhh
Q psy12242 311 INAVIYFSTKIFTMA---QLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVF--VVTVLLTIVMQFVE 385 (498)
Q Consensus 311 ~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 385 (498)
+..+..|...+.++. +-.....|.+-....+.+.++.+..|++..+..+...+.++..... ..++++...
T Consensus 263 y~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t----- 337 (412)
T PF01770_consen 263 YYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFT----- 337 (412)
T ss_pred HHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHh-----
Confidence 777777777777665 3344456777777788888888899988555555444433332222 222222221
Q ss_pred hhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHH
Q psy12242 386 IFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFI 442 (498)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~ 442 (498)
...+..-....++...+... .++....++.....+.-|...|+.+.+..+-..+
T Consensus 338 --~~Iwv~Y~~yIif~~~y~fl-iTiA~~qIA~~l~~e~yaLVFGiNtf~Al~LQti 391 (412)
T PF01770_consen 338 --GNIWVCYAGYIIFRSLYMFL-ITIASFQIAKNLSEERYALVFGINTFVALVLQTI 391 (412)
T ss_pred --hHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccccceeeeeeeHHHHHHHHHHh
Confidence 12222222233333333332 2444444445555666677777776665444433
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.7e-13 Score=126.81 Aligned_cols=137 Identities=14% Similarity=0.067 Sum_probs=115.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhccch--hHHHHHHHHHHHhhh
Q psy12242 80 IEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSS--YEMIILGRFLIGINS 157 (498)
Q Consensus 80 ~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~r~l~G~~~ 157 (498)
.++.+. +++.+.+.++..++.++.|++.||+|||+.+..+..+..++.++..+. ++ ...+++..++.|++.
T Consensus 237 ~~~~~~----~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~ 309 (377)
T TIGR00890 237 LSDGFL----VLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFI---PMLNDVLFLATVALVFFTW 309 (377)
T ss_pred CCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHc---ccchhHHHHHHHHHHHHHh
Confidence 455555 888999999999999999999999999999999999988888877776 43 233456678889988
Q ss_pred hhhhcchhhhhhccCcccchhhhHhHHHHHHHHHHHHHHHHhcCcccCCCCchhHHHHhhhHHHHHHH
Q psy12242 158 GLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLLGTADGWPLLLAFTLVPGIYQM 225 (498)
Q Consensus 158 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~ 225 (498)
+...+....++.|.+|+++|+++.++......+|..++|. ..+.+.+..||++.|.+.+++.++.+
T Consensus 310 g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~--~~g~l~~~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 310 GGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGL--IASHALTEIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred ccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHH--HHHHHHhhhchhhHHHHHHHHHHHhc
Confidence 8888888889999999999999999999999999999999 44577777899999988877666543
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.1e-11 Score=120.15 Aligned_cols=165 Identities=12% Similarity=0.060 Sum_probs=119.8
Q ss_pred hchHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhh
Q psy12242 309 SGINAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFV 388 (498)
Q Consensus 309 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (498)
..........|.+.+++|.+..+.++..+...++..++.++.|++.||+|||+.+..+..+..++.+...+..
T Consensus 26 ~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~------- 98 (405)
T TIGR00891 26 FDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAP------- 98 (405)
T ss_pred HHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhc-------
Confidence 3445556666778888999999999999999999999999999999999999999988877777766655431
Q ss_pred hHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhh--hHHHHHHHHHH
Q psy12242 389 MSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIH--GYVFTIFAVLQ 466 (498)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g--~~~~~~~~~~~ 466 (498)
++..+....++.+.......+....++.|.+|+++|+++.++.+....+|..+++.+.+.+.+..+ +...+....+.
T Consensus 99 -~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~ 177 (405)
T TIGR00891 99 -GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILP 177 (405)
T ss_pred -cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHH
Confidence 222222333334444444556677788899999999999999999999999999999998887765 43333333333
Q ss_pred HHHHHHHHHhccCCC
Q psy12242 467 AMFVLFIYKKVPETK 481 (498)
Q Consensus 467 ~~~~~~~~~~~~~~~ 481 (498)
.+..++.....||++
T Consensus 178 ~~~~~~~~~~~~~~~ 192 (405)
T TIGR00891 178 IIFALWLRKNIPEAE 192 (405)
T ss_pred HHHHHHHHHhCCCCh
Confidence 333334444456543
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.7e-12 Score=121.44 Aligned_cols=178 Identities=13% Similarity=0.058 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHHhhchHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHH
Q psy12242 296 LFISMTVMVAQQLSGINAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTV 375 (498)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~ 375 (498)
.+.+..........+........|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+.+..+.....++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~ 83 (392)
T PRK10473 4 FLLCSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASL 83 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHH
Confidence 34455555555555556666778888889999999999999999999999999999999999999999888877777766
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhh
Q psy12242 376 LLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIH 455 (498)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g 455 (498)
.+.... ..........+.+.......+....+..|.+|+++|+++.++.+....++..++|.+.+.+.+..+
T Consensus 84 ~~~~~~--------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g 155 (392)
T PRK10473 84 LCSLAE--------TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFP 155 (392)
T ss_pred HHHHhC--------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 654421 111112222222222223345667788899999999999999999999999999999888887777
Q ss_pred h-HHHHHHHHHHHHHHHHHHHhccCCC
Q psy12242 456 G-YVFTIFAVLQAMFVLFIYKKVPETK 481 (498)
Q Consensus 456 ~-~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (498)
+ ..+.+.+.+.++..++.....+|++
T Consensus 156 ~~~~~~~~~~~~~i~~~~~~~~~~~~~ 182 (392)
T PRK10473 156 WQSLFYTMAAMGILVLLLSLFILKETR 182 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 6 4566666666666666556566654
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.5e-12 Score=114.70 Aligned_cols=162 Identities=13% Similarity=0.036 Sum_probs=133.5
Q ss_pred HHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHH
Q psy12242 312 NAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSI 391 (498)
Q Consensus 312 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (498)
..+..-.|.+.++.++|..+.|.+.+.+.+..-++.++.|.++||.+.|..+..++++.++..+++++. .+.
T Consensus 46 knF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs--------~s~ 117 (448)
T COG2271 46 KNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFS--------PSL 117 (448)
T ss_pred HhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhh--------hHH
Confidence 345666788888889999999999999999999999999999999999999999999999999999885 344
Q ss_pred HHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhH--HHHHHhhhh-HHHHHHHHHHHH
Q psy12242 392 FCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGF--LPIESIIHG-YVFTIFAVLQAM 468 (498)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~--~~l~~~~g~-~~~~~~~~~~~~ 468 (498)
..+.++..+.+.+...-.|.+...+..-+|+++||+..++.|+..++|+.+.|.+. +.+.++.++ ..|+.-++++++
T Consensus 118 ~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaii 197 (448)
T COG2271 118 FLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAII 197 (448)
T ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 44445555555555555577777778999999999999999999999999999999 888887776 466666777777
Q ss_pred HHHHHHHhccCCC
Q psy12242 469 FVLFIYKKVPETK 481 (498)
Q Consensus 469 ~~~~~~~~~~~~~ 481 (498)
..++.++..+++.
T Consensus 198 val~~~~~~rd~P 210 (448)
T COG2271 198 VALILLFLLRDRP 210 (448)
T ss_pred HHHHHHHHhCCCc
Confidence 7777777666543
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.4e-12 Score=122.53 Aligned_cols=162 Identities=16% Similarity=0.072 Sum_probs=122.8
Q ss_pred hHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhH
Q psy12242 311 INAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMS 390 (498)
Q Consensus 311 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (498)
........|.+.+++|.+..+.++......++.+++.++.|+++||+|||+.+..+..+..++.+..... ..
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~--------~~ 104 (398)
T TIGR00895 33 LAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALA--------TN 104 (398)
T ss_pred HHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHc--------cc
Confidence 4456677788888899999999999999999999999999999999999999988887777766655442 12
Q ss_pred HHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhH-HHHHHHHHHHHH
Q psy12242 391 IFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIHGY-VFTIFAVLQAMF 469 (498)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~~-~~~~~~~~~~~~ 469 (498)
...+.....+.+.......+...++..|.+|++.|+++.++.+....+|..+++.+.+.+.+..++. .+.+.+++..+.
T Consensus 105 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~ 184 (398)
T TIGR00895 105 VTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLL 184 (398)
T ss_pred hHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHH
Confidence 2222233333444444455777888999999999999999999999999999999999998887763 445544555555
Q ss_pred HHHHHHhccCC
Q psy12242 470 VLFIYKKVPET 480 (498)
Q Consensus 470 ~~~~~~~~~~~ 480 (498)
.++...+.+|+
T Consensus 185 ~~~~~~~~~~~ 195 (398)
T TIGR00895 185 LLLLMRFLPES 195 (398)
T ss_pred HHHHHHhCCCC
Confidence 55555556654
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.6e-11 Score=108.23 Aligned_cols=230 Identities=15% Similarity=0.121 Sum_probs=146.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhh
Q psy12242 80 IEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGL 159 (498)
Q Consensus 80 ~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 159 (498)
.++.|+ +.+....+...++..++.|.++||+|||+..++.+++..++++..- . ++++.++++|++.|++.+.
T Consensus 66 ~~~~qI----a~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~-~---~~~~~L~~GRvlgGiaTSL 137 (354)
T PF05631_consen 66 FSEHQI----AILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKH-S---SNYPVLLLGRVLGGIATSL 137 (354)
T ss_pred CCHHHH----HHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHh-c---cccHHHHHHHHHHHHHHHH
Confidence 688888 9999999999999999999999999999999999999999997544 3 7999999999999999999
Q ss_pred hhcchhhhh-hcc----CcccchhhhHhHHH-HHHHHHHHHHHHHhcCcccCCCC--chhHHHHhhhHHHHHHHhhc-cc
Q psy12242 160 NAGLAPMYL-AEI----SPVHLRGAVGTVYQ-LVITISIVISQILGLGGLLGTAD--GWPLLLAFTLVPGIYQMITL-PF 230 (498)
Q Consensus 160 ~~~~~~~~i-~~~----~~~~~r~~~~~~~~-~~~~~g~~~~~~i~~~~~~~~~~--~wr~~f~~~~~~~~~~~~~~-~~ 230 (498)
.+.+-.++. .|. +|++..+..++... ...++-.+.+.++ +.++.+.. |-..+|.......++..+.. ..
T Consensus 138 LfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~--a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~ 215 (354)
T PF05631_consen 138 LFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVV--ANVLADWFGFGPVAPFDAAIVLLAVAAVLILKT 215 (354)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHH--HHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhc
Confidence 988887775 343 23333344443333 2222223333332 12333333 33778887766665555443 33
Q ss_pred ccCChhhHHHhcCCHHHHHHHHHhhcCCchhHHHHHHHHHhHHhhhcCCCchhhhHhccccchhhHHHHHHHHHHHHhhc
Q psy12242 231 CPESPKYILLSKGQELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSG 310 (498)
Q Consensus 231 ~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (498)
-+|++.. +.+..+. . +.-+..++.+.+++ +++...........+.
T Consensus 216 W~ENyg~----~~~~~~~----------------~-----------~~~~~a~~~i~~d~----ril~LG~~qslFE~sm 260 (354)
T PF05631_consen 216 WPENYGD----TSSSSSL----------------S-----------GSFREAWRAILSDP----RILLLGLIQSLFEGSM 260 (354)
T ss_pred ccccCCC----cccccch----------------H-----------HHHHHHHHHHHcCc----hhHHHHHHHHHHHHHH
Confidence 4555210 0000000 0 00011334455555 4455666666666666
Q ss_pred hHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhc
Q psy12242 311 INAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEI 356 (498)
Q Consensus 311 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr 356 (498)
+.++..|.|.+..+ + ....-|+++..+.++.++|+.+..++..+
T Consensus 261 y~FVflWtPaL~~~-~-~~~P~GlIFssFM~a~MlGS~lf~~l~s~ 304 (354)
T PF05631_consen 261 YLFVFLWTPALDPD-D-EELPLGLIFSSFMVAMMLGSSLFSRLLSK 304 (354)
T ss_pred HHheeeeeceecCC-C-CCCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 77777777877621 1 12346788888888899999888665543
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.8e-12 Score=120.33 Aligned_cols=162 Identities=16% Similarity=0.049 Sum_probs=123.9
Q ss_pred HHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHH
Q psy12242 312 NAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSI 391 (498)
Q Consensus 312 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (498)
.......|.+.+++|.++.+.++..+...++..++.++.|++.||+|||+.+..+..+..++.....+.. ..
T Consensus 11 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~--------~~ 82 (399)
T TIGR00893 11 ANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAG--------AY 82 (399)
T ss_pred HhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHc--------CH
Confidence 4555666778888999999999999999999999999999999999999999988887777776665532 22
Q ss_pred HHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh-HHHHHHHHHHHHHH
Q psy12242 392 FCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIHG-YVFTIFAVLQAMFV 470 (498)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~-~~~~~~~~~~~~~~ 470 (498)
..+.....+.+.......+....+..|.+|+++|++.+++.+....+|..+++.+.+.+.+..++ +.+.+.+++.++..
T Consensus 83 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (399)
T TIGR00893 83 VSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWG 162 (399)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence 22233333344444445577788899999999999999999999999999999999998888776 45555555555555
Q ss_pred HHHHHhccCCC
Q psy12242 471 LFIYKKVPETK 481 (498)
Q Consensus 471 ~~~~~~~~~~~ 481 (498)
++.+...+|++
T Consensus 163 ~~~~~~~~~~~ 173 (399)
T TIGR00893 163 VLWLKFIPDPP 173 (399)
T ss_pred HHhhheecCCC
Confidence 55555455543
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.39 E-value=5e-12 Score=119.86 Aligned_cols=142 Identities=21% Similarity=0.420 Sum_probs=128.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccch-hhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhh
Q psy12242 80 IEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKG-GLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSG 158 (498)
Q Consensus 80 ~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g 158 (498)
.++.+. ++..+...++..++.++.|++.||+|||+ .+..+..+..++.+..... ++.+.+.+..++.|++.+
T Consensus 208 ~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~g~~~~ 280 (352)
T cd06174 208 LSAAEA----GLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALA---PSLALLLVALLLLGFGLG 280 (352)
T ss_pred CCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHh
Confidence 466666 99999999999999999999999999999 9999999999999999988 888999999999999999
Q ss_pred hhhcchhhhhhccCcccchhhhHhHHHHHHHHHHHHHHHHhcCcccCCCCchhHHHHhhhHHHHHHHhhccc
Q psy12242 159 LNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLLGTADGWPLLLAFTLVPGIYQMITLPF 230 (498)
Q Consensus 159 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 230 (498)
...+...+++.|..|+++|++.+++......+|..+++.+ .+.+.+..+|+..+++.+++.++..+...+
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i--~g~l~~~~~~~~~~~~~~~~~~i~~i~~~~ 350 (352)
T cd06174 281 FAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLL--AGLLLDTGGYGGVFLILAALALLAALLLLL 350 (352)
T ss_pred ccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhcccCcchHHHHHHHHHHHHHHHhee
Confidence 9999999999999999999999999999999999999994 457777889999999988888777665544
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.3e-11 Score=119.54 Aligned_cols=161 Identities=14% Similarity=0.020 Sum_probs=117.3
Q ss_pred HHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHH
Q psy12242 312 NAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSI 391 (498)
Q Consensus 312 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (498)
.......|.+.+++|.++.+.++..+...++..++.++.|++.||+|||+.+..+..+..+..+..... .+.
T Consensus 32 ~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--------~~~ 103 (406)
T PRK11551 32 QSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQA--------WDF 103 (406)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh--------ccH
Confidence 344555677888899999999999999999999999999999999999999998887776666554442 112
Q ss_pred HHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhH-HHHHHHHHHHHHH
Q psy12242 392 FCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIHGY-VFTIFAVLQAMFV 470 (498)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~~-~~~~~~~~~~~~~ 470 (498)
..+.....+.+.......+....++.|.+|+++|++++++.+....+|..+++.+.+.+.+..++. .+++.+++.++..
T Consensus 104 ~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (406)
T PRK11551 104 PSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLV 183 (406)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHH
Confidence 222222333333333344666778899999999999999999999999999999888777766663 4455454444444
Q ss_pred HHHHHhccCC
Q psy12242 471 LFIYKKVPET 480 (498)
Q Consensus 471 ~~~~~~~~~~ 480 (498)
.+...+.||+
T Consensus 184 ~~~~~~l~~~ 193 (406)
T PRK11551 184 PLLMRWLPES 193 (406)
T ss_pred HHHHHhCCCC
Confidence 4444555654
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.6e-11 Score=115.47 Aligned_cols=147 Identities=10% Similarity=-0.080 Sum_probs=106.7
Q ss_pred HHHHhHH-HHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHH
Q psy12242 313 AVIYFST-KIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSI 391 (498)
Q Consensus 313 ~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (498)
......| ++.+++|.++.+.++..+...+...++.++.|+++||+|||+++..+..+.+++.+.+.......+......
T Consensus 33 ~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (399)
T PRK05122 33 LPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSL 112 (399)
T ss_pred HHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHH
Confidence 3333444 456788999999999999999999999999999999999999999988877776555444322111101122
Q ss_pred HHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhHHH
Q psy12242 392 FCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIHGYVF 459 (498)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~~~~ 459 (498)
..++...++.+.......+....+..|.+|+++|+++.++......++..+++.+.+.+.+..++...
T Consensus 113 ~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~ 180 (399)
T PRK05122 113 LLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGL 180 (399)
T ss_pred HHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHH
Confidence 23333333334344444566666778999999999999998888889999999999999888886543
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.1e-11 Score=115.77 Aligned_cols=162 Identities=16% Similarity=0.050 Sum_probs=120.3
Q ss_pred HHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHH
Q psy12242 313 AVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIF 392 (498)
Q Consensus 313 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (498)
......|.+.+++|.+..+.++..+...++..++.++.|++.||+|||+.+..+..+.+++.+...+.. +..
T Consensus 21 ~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~--------~~~ 92 (382)
T PRK10091 21 GIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSS--------SYL 92 (382)
T ss_pred HHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhC--------cHH
Confidence 445566778889999999999999999999999999999999999999999998888887777665531 222
Q ss_pred HHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh-HHHHHHHHHHHHHHH
Q psy12242 393 CIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIHG-YVFTIFAVLQAMFVL 471 (498)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~-~~~~~~~~~~~~~~~ 471 (498)
.+.....+.+.......+.......|.+|+++|+++++.......++..+++.+.+.+.+..++ +.+.+.+++.++..+
T Consensus 93 ~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~ 172 (382)
T PRK10091 93 MLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLA 172 (382)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHH
Confidence 2222223333322223355556778889999999999999998999999999999998887776 456666665555555
Q ss_pred HHHHhccCCCC
Q psy12242 472 FIYKKVPETKN 482 (498)
Q Consensus 472 ~~~~~~~~~~~ 482 (498)
..+...||.++
T Consensus 173 ~~~~~lp~~~~ 183 (382)
T PRK10091 173 SIYFWVPDIRD 183 (382)
T ss_pred HHHHhCCCCCc
Confidence 55555676543
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.5e-11 Score=118.44 Aligned_cols=142 Identities=15% Similarity=0.048 Sum_probs=110.9
Q ss_pred chHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhh
Q psy12242 310 GINAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVM 389 (498)
Q Consensus 310 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (498)
......+..|.+.++.|.++.+.++..+...++..++.++.|++.||+|||+.+..+....+++.+...+..
T Consensus 33 ~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~-------- 104 (426)
T PRK12307 33 DFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLAS-------- 104 (426)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHh--------
Confidence 344556666777788999999999999999999999999999999999999999999988888877665532
Q ss_pred HHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhHHH
Q psy12242 390 SIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIHGYVF 459 (498)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~~~~ 459 (498)
+...+...-.+.+.......+....+..|.+|+++|+++.++......+|..+++.+.+.+.+..++...
T Consensus 105 ~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~ 174 (426)
T PRK12307 105 GVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAA 174 (426)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHH
Confidence 2222223333333333344566777888999999999999999999999999999998888887776433
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.4e-12 Score=119.25 Aligned_cols=144 Identities=19% Similarity=0.263 Sum_probs=117.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhh
Q psy12242 80 IEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGL 159 (498)
Q Consensus 80 ~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 159 (498)
.++.+. +++.+.......++.++.|++.||+|||+.+..+.++..+..+...+. ++.+.+++.+++.|++.+.
T Consensus 232 ~~~~~~----g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~g~ 304 (375)
T TIGR00899 232 LPDKLA----GLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAAD---NSLWALLMLQLLNAIFIGI 304 (375)
T ss_pred CCHHHH----HHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 566666 777777777778889999999999999999988877766665555555 7788888899999999998
Q ss_pred hhcchhhhhhccCcccchhhhHhHHHHHHHHHHHHHHHHhcCcccCCCCchhHHHHhhhHHHHHHHhhcccccC
Q psy12242 160 NAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLLGTADGWPLLLAFTLVPGIYQMITLPFCPE 233 (498)
Q Consensus 160 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 233 (498)
..+....++.|..|+ +|+++.++.+....+|..++|.+ .+.+.+..+|+..|++.++..++..+...+++|
T Consensus 305 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~--~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 375 (375)
T TIGR00899 305 LAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSV--GGILAERWSYHAVYWFAIVMLIVALFCLLLIKD 375 (375)
T ss_pred HHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHH--HHHHHHhccchhHHHHHHHHHHHHHHHHheecC
Confidence 888888899999885 56799999999999999999984 446667779999999988887777766665544
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.1e-12 Score=124.15 Aligned_cols=164 Identities=15% Similarity=0.062 Sum_probs=126.8
Q ss_pred chHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhh
Q psy12242 310 GINAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVM 389 (498)
Q Consensus 310 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (498)
.........|.+.+++|.+..+.++..+...++..++.++.|++.||+|||+.+..+..+..++.+..... .
T Consensus 17 ~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--------~ 88 (485)
T TIGR00711 17 DSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVA--------P 88 (485)
T ss_pred HHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCc--------C
Confidence 34566677888889999999999999999999999999999999999999999998888888777666542 1
Q ss_pred HHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh-HHHHHHHHHHHH
Q psy12242 390 SIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIHG-YVFTIFAVLQAM 468 (498)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~-~~~~~~~~~~~~ 468 (498)
....+.....+.+.......+....++.|.+|++.|+++.++......++..++|.+.+.+.+..++ +.+++.+.+.++
T Consensus 89 ~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~ 168 (485)
T TIGR00711 89 NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGII 168 (485)
T ss_pred CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHH
Confidence 2223333334444444445577788899999999999999999999999999999999999988886 455555555555
Q ss_pred HHHHHHHhccCCC
Q psy12242 469 FVLFIYKKVPETK 481 (498)
Q Consensus 469 ~~~~~~~~~~~~~ 481 (498)
..++..+..++++
T Consensus 169 ~~~~~~~~~~~~~ 181 (485)
T TIGR00711 169 VVVVAFFILPRDK 181 (485)
T ss_pred HHHHHHHHcCCcc
Confidence 5555555556543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.7e-11 Score=114.66 Aligned_cols=158 Identities=13% Similarity=-0.021 Sum_probs=115.7
Q ss_pred HHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHH
Q psy12242 312 NAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSI 391 (498)
Q Consensus 312 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (498)
.......|.+..+.+.++.+.++..+...++..++.++.|+++||+|||+.+..+..+..++...+........ .+.
T Consensus 16 ~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 92 (365)
T TIGR00900 16 AITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGG---LNI 92 (365)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCC---CcH
Confidence 34455556677778999999999999999999999999999999999999999888777777666655431110 022
Q ss_pred HHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhH-HHHHHHHHHHHHH
Q psy12242 392 FCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIHGY-VFTIFAVLQAMFV 470 (498)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~~-~~~~~~~~~~~~~ 470 (498)
..+.....+.+.......+...++..|.+|+++|++.++..+....+|..++|.+.+.+.+..++. .+++.++..++..
T Consensus 93 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~ 172 (365)
T TIGR00900 93 WQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISA 172 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 222223333333333445677788999999999999999999999999999999999999888864 4444444444443
Q ss_pred HH
Q psy12242 471 LF 472 (498)
Q Consensus 471 ~~ 472 (498)
++
T Consensus 173 ~~ 174 (365)
T TIGR00900 173 LL 174 (365)
T ss_pred HH
Confidence 33
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.8e-11 Score=115.96 Aligned_cols=166 Identities=14% Similarity=0.010 Sum_probs=113.5
Q ss_pred hHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhH
Q psy12242 311 INAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMS 390 (498)
Q Consensus 311 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (498)
........|.+.++.+.++.+.++......+...++.++.|+++||+|||+.+..+..+.+++...+........ ..
T Consensus 33 ~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~ 109 (417)
T PRK10489 33 LGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPE---PS 109 (417)
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCC---Cc
Confidence 345566667777778889999999999999999999999999999999999998887776666555443211111 11
Q ss_pred HHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh-HHHHHHHHHHHHH
Q psy12242 391 IFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIHG-YVFTIFAVLQAMF 469 (498)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~-~~~~~~~~~~~~~ 469 (498)
+..+....+..+.......+....+..|..|+++|+++.++.+....++..++|.+.+.+.+..++ +.+.+.++..++.
T Consensus 110 ~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~ 189 (417)
T PRK10489 110 LLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFIT 189 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 122222222222222222345566778999999999999999999999999999999999887775 3444444333333
Q ss_pred HHHHHHhccCC
Q psy12242 470 VLFIYKKVPET 480 (498)
Q Consensus 470 ~~~~~~~~~~~ 480 (498)
.+.....|+.
T Consensus 190 -~~~~~~l~~~ 199 (417)
T PRK10489 190 -LLPLLRLPAL 199 (417)
T ss_pred -HHHHHhCCCC
Confidence 3333445543
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.6e-11 Score=114.41 Aligned_cols=163 Identities=13% Similarity=0.049 Sum_probs=111.6
Q ss_pred hHHHHHHHHHHHHhhchHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhcc-CCceehhhhhHHHHHH
Q psy12242 295 PLFISMTVMVAQQLSGINAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEIS-GRKTLLLIGFMGVFVV 373 (498)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~ 373 (498)
.+...+.......++.+....+.+.++.+..|+++.+++...........++.+++|+++||+ |||+.+..+.++..++
T Consensus 10 ~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg 89 (493)
T PRK15462 10 AIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIG 89 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHH
Confidence 334444444444444444444444444566799999999999999999999999999999999 9999999988888887
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCC--hhhHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy12242 374 TVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQS--ARPLATSLAVSINWTANFIVGLGFLPIE 451 (498)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~~~~~~~~~~~~l~ 451 (498)
.+.+.... . ...... ....+.. .......+...++..|.+|++ .|.++.++.+...++|+.++|.+.+++.
T Consensus 90 ~lll~~~~---~--~~~~~~-l~l~li~-iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~ 162 (493)
T PRK15462 90 HVVLGASE---I--HPSFLY-LSLAIIV-CGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQ 162 (493)
T ss_pred HHHHHHhh---c--chhHHH-HHHHHHH-HhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHH
Confidence 76554211 0 011111 1111111 112223355567889999976 6899999999999999999999999999
Q ss_pred HhhhhH-HHHHHHH
Q psy12242 452 SIIHGY-VFTIFAV 464 (498)
Q Consensus 452 ~~~g~~-~~~~~~~ 464 (498)
+..|+. .|.+.++
T Consensus 163 ~~~Gw~~~F~iaai 176 (493)
T PRK15462 163 EEYSWAMGFGLAAV 176 (493)
T ss_pred hhhChHHHHHHHHH
Confidence 888863 4444433
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.2e-12 Score=122.11 Aligned_cols=144 Identities=16% Similarity=0.221 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhc-cchhHHHHHHHHHHHhhhhhhhcchhhh
Q psy12242 89 FAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKA-FSSYEMIILGRFLIGINSGLNAGLAPMY 167 (498)
Q Consensus 89 ~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~r~l~G~~~g~~~~~~~~~ 167 (498)
.+...++..++..++.++.|+++||+|||+++.++.++.+++..+...... ..+++.+++.+++.|++.+...+....+
T Consensus 253 ~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~ 332 (418)
T TIGR00889 253 ASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVF 332 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 389999999999999999999999999999999999999888776666310 0134667788999999999888999999
Q ss_pred hhccCcccchhhhHhHHH-HHHHHHHHHHHHHhcCcccCCC------CchhHHHHhhhHHHHHHHh-hcccccCC
Q psy12242 168 LAEISPVHLRGAVGTVYQ-LVITISIVISQILGLGGLLGTA------DGWPLLLAFTLVPGIYQMI-TLPFCPES 234 (498)
Q Consensus 168 i~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~i~~~~~~~~~------~~wr~~f~~~~~~~~~~~~-~~~~~~e~ 234 (498)
+.|++|+++|+++.++.+ ...++|..+||++ ++.+.+. .||+..|.+.++..++..+ ..+++||+
T Consensus 333 i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l--~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 333 VEKEVPVHIRASAQGLFTLMCNGFGSLLGYIL--SGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYS 405 (418)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHH--HHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 999999999999999997 6788999999994 3454443 4799999887766655554 44557776
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.35 E-value=2e-12 Score=125.63 Aligned_cols=141 Identities=14% Similarity=0.087 Sum_probs=118.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhh
Q psy12242 89 FAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYL 168 (498)
Q Consensus 89 ~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i 168 (498)
.|++.++..++..++.+++|++.||+|||+.+..+.++.+++.++.+++ ++.+.+++.+++.|++.+...+....++
T Consensus 264 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~---~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 340 (420)
T PRK09528 264 FGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFA---TGPLEVSILKLLHAFEVPFLLVGVFKYI 340 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3899999999999999999999999999999999999999988888888 8899999999999999988888888999
Q ss_pred hccCcccchhhhHhH-HHHHHHHHHHHHHHHhcCcccCCCCchhHHHHhhhHHHHHHHhh-cccccCC
Q psy12242 169 AEISPVHLRGAVGTV-YQLVITISIVISQILGLGGLLGTADGWPLLLAFTLVPGIYQMIT-LPFCPES 234 (498)
Q Consensus 169 ~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~ 234 (498)
.|.+|++.|+...+. ++....+|..++++ ..+++.+..||+..|.+.++..++..+. ..++++.
T Consensus 341 ~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~--~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~ 406 (420)
T PRK09528 341 TLNFDVRLSATIYLVGFQFAKQLGAVFLST--LAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGD 406 (420)
T ss_pred HHHcCccceeeeeeehHHHHHHHHHHHHHH--HHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999887655 56778899999998 4467777789999999877666554433 3344443
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.2e-10 Score=113.11 Aligned_cols=161 Identities=14% Similarity=0.076 Sum_probs=113.5
Q ss_pred hHHHHHhHHHHHhhcCCCchh-----HHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhh
Q psy12242 311 INAVIYFSTKIFTMAQLSDTA-----AQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVE 385 (498)
Q Consensus 311 ~~~~~~~~~~~~~~~g~~~~~-----~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (498)
......+.|.+.++.|.+..+ .+.......+...++.++.|+++||+|||+.+..+....+++.+.+....
T Consensus 30 ~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~---- 105 (408)
T PRK09874 30 FSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQ---- 105 (408)
T ss_pred HHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHh----
Confidence 344555667777888888654 37778888899999999999999999999999888777777665554321
Q ss_pred hhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh-HHHHHHHH
Q psy12242 386 IFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIHG-YVFTIFAV 464 (498)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~-~~~~~~~~ 464 (498)
++..+.....+.+.. .+..+....+..|.+|+++|+++.++.+....++..++|.+.+.+.+..++ ..+.+.++
T Consensus 106 ----~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~ 180 (408)
T PRK09874 106 ----NIWQFLILRALLGLL-GGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITAS 180 (408)
T ss_pred ----hHHHHHHHHHHHHHh-hhhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 111222222222222 233455566777889999999999999999999999999999999887776 45555666
Q ss_pred HHHHHHHHHHHhccCC
Q psy12242 465 LQAMFVLFIYKKVPET 480 (498)
Q Consensus 465 ~~~~~~~~~~~~~~~~ 480 (498)
+.++..+......+|+
T Consensus 181 ~~~~~~~~~~~~~~~~ 196 (408)
T PRK09874 181 VLFLCFLVTLFCIREN 196 (408)
T ss_pred HHHHHHHHHHHHhccC
Confidence 5555555555555554
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.2e-11 Score=112.97 Aligned_cols=160 Identities=13% Similarity=-0.031 Sum_probs=116.3
Q ss_pred HHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHH
Q psy12242 312 NAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSI 391 (498)
Q Consensus 312 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (498)
....+..+++.++.|.++.+.++......+...+..++.|+++||+|||+.+..+..+..++.+.+.... ..
T Consensus 28 ~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~--------~~ 99 (400)
T PRK11646 28 VVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAH--------EP 99 (400)
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhc--------cH
Confidence 3344445556678899999999999999999999999999999999999999998888888777765421 11
Q ss_pred HHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh-HHHHHHHHHHHHHH
Q psy12242 392 FCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIHG-YVFTIFAVLQAMFV 470 (498)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~-~~~~~~~~~~~~~~ 470 (498)
..+.......+.......+...++..|..|+++|++++|+.+....++..++|.+.+.+. ..++ ..+++.+...++..
T Consensus 100 ~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~ 178 (400)
T PRK11646 100 WLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAA 178 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHH
Confidence 122222222233333344666777889999999999999999999999999999999998 5565 45555555555554
Q ss_pred HHHHHhccCC
Q psy12242 471 LFIYKKVPET 480 (498)
Q Consensus 471 ~~~~~~~~~~ 480 (498)
++.....+|.
T Consensus 179 i~~~~~~~~~ 188 (400)
T PRK11646 179 AFNAWLLPAY 188 (400)
T ss_pred HHHHHhCCcc
Confidence 4444445543
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.1e-11 Score=117.54 Aligned_cols=158 Identities=13% Similarity=0.047 Sum_probs=119.5
Q ss_pred HHHHhHH-HHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHH
Q psy12242 313 AVIYFST-KIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSI 391 (498)
Q Consensus 313 ~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (498)
......| .+.+++|.+..+.++..+...++..++.++.|+++||+|||+.+..+..+.+++.+...+. + ..+
T Consensus 14 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~----~---~~~ 86 (352)
T PF07690_consen 14 IISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA----S---NFW 86 (352)
T ss_dssp HHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH----C---CHH
T ss_pred HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh----h---hHH
Confidence 3444555 6778889999999999999999999999999999999999999888888888874444321 1 122
Q ss_pred HHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh-HHHHHHHHHHHHHH
Q psy12242 392 FCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIHG-YVFTIFAVLQAMFV 470 (498)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~-~~~~~~~~~~~~~~ 470 (498)
.+....++.+.......+....++.|.+|+++|++.+++.+....+|..++|.+.+.+.+..++ ..+++.+++.++..
T Consensus 87 -~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 165 (352)
T PF07690_consen 87 -LLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAA 165 (352)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHH
T ss_pred -HHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhh
Confidence 2333334444444455677888999999999999999999999999999999999999877776 46677777777666
Q ss_pred HHHHHhcc
Q psy12242 471 LFIYKKVP 478 (498)
Q Consensus 471 ~~~~~~~~ 478 (498)
++...+.+
T Consensus 166 il~~~~~~ 173 (352)
T PF07690_consen 166 ILFILFLP 173 (352)
T ss_dssp HHHHCCC-
T ss_pred hhHhhhhh
Confidence 54334443
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.1e-10 Score=115.11 Aligned_cols=159 Identities=13% Similarity=0.035 Sum_probs=108.3
Q ss_pred hHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhH
Q psy12242 311 INAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMS 390 (498)
Q Consensus 311 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (498)
......+.|.+.+++|++..+.+...+...++..++.++.|+++||+|||+.+..+.++.+++.++..+.. +
T Consensus 52 ~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~--------s 123 (476)
T PLN00028 52 TFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVS--------S 123 (476)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhc--------C
Confidence 34455566778889999999999988888899999999999999999999988887777766655554421 1
Q ss_pred HHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHh---------hhh-HHHH
Q psy12242 391 IFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESI---------IHG-YVFT 460 (498)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~---------~g~-~~~~ 460 (498)
...+....++.++..... .....++.|.+|++.|+++.|+.+...++|..+++.+.+.+... .+| +.+.
T Consensus 124 ~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~ 202 (476)
T PLN00028 124 ATGFIAVRFFIGFSLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFF 202 (476)
T ss_pred HHHHHHHHHHHHHHHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHH
Confidence 111212222222222222 23345678999999999999999988888888887777655431 244 4566
Q ss_pred HHHHHHHHHHHHHHHhcc
Q psy12242 461 IFAVLQAMFVLFIYKKVP 478 (498)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~ 478 (498)
+.+++.++..++.+++.+
T Consensus 203 i~g~l~l~~~l~~~~~~~ 220 (476)
T PLN00028 203 VPGLLHIIMGILVLTLGQ 220 (476)
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 666666655555444433
|
|
| >KOG3098|consensus | Back alignment and domain information |
|---|
Probab=99.33 E-value=5e-09 Score=98.96 Aligned_cols=316 Identities=16% Similarity=0.111 Sum_probs=191.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhhccC
Q psy12242 93 VSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEIS 172 (498)
Q Consensus 93 ~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~ 172 (498)
.++-+..+.+.+++.+.+.|+.|+|..++++...+..-.+...+ .|-+.+++.-.+.|+|.+..+..--.+++|..
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~----~N~y~~yfssallG~Gaallw~GqG~ylt~~s 131 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF----PNSYYLYFSSALLGFGAALLWTGQGGYLTSNS 131 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh----cchHHHHHHHHHhhhhHHheecccceehhhcC
Confidence 67777888999999999999999999999999999988877776 57788899999999999999999999999999
Q ss_pred cccchhhhHhHHHHHHHHHHHHHHHHhcCcc-cCC-----CCchh--------------HHHHhhhHHHHHHHhhccccc
Q psy12242 173 PVHLRGAVGTVYQLVITISIVISQILGLGGL-LGT-----ADGWP--------------LLLAFTLVPGIYQMITLPFCP 232 (498)
Q Consensus 173 ~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~-~~~-----~~~wr--------------~~f~~~~~~~~~~~~~~~~~~ 232 (498)
+++.+.+..++..+....+.++|..+-.... ... ..+-+ ..+.+...+..+..+...+.|
T Consensus 132 t~~tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~p 211 (461)
T KOG3098|consen 132 TRETIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFLP 211 (461)
T ss_pred ChhhHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeecC
Confidence 9999999999999999999888876422111 111 01111 111111111222222233333
Q ss_pred CChhhHHHhcCCHHHHHHHHHhhcCCchhHHHHHHHHHhHHhhhcCCCc---hhhhHhccccchhhHHHHHHHHHHHHhh
Q psy12242 233 ESPKYILLSKGQELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIPKV---SLREMFTNAQLRIPLFISMTVMVAQQLS 309 (498)
Q Consensus 233 e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (498)
.+... .+.+ .. + ..... ...+++++++ ++.....++...+.
T Consensus 212 ~~~~~--------~~~~--------------------~~-~---~~~~~~l~~~~~l~~~~~----ml~L~~~f~~tG~~ 255 (461)
T KOG3098|consen 212 SKDVV--------NCKS--------------------SS-E---TSFSELLKLTFKLLKTPK----MLLLFPFFFYTGLE 255 (461)
T ss_pred ccchh--------hhhh--------------------hc-c---ccHHHHHHHHHHHhcCHh----HHHHHHHHHHHHHH
Confidence 32100 0000 00 0 00011 1223334432 22222222222222
Q ss_pred chHHHHHhHHHHHh--hcCCCc-hhHHHHHHHHHHHHHHHHHhhhhhhhc---cCCceehhhhhHHHHHHHHHHHHHHHH
Q psy12242 310 GINAVIYFSTKIFT--MAQLSD-TAAQWATLGMGTMNVVMTLVSLVLVEI---SGRKTLLLIGFMGVFVVTVLLTIVMQF 383 (498)
Q Consensus 310 ~~~~~~~~~~~~~~--~~g~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr---~g~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (498)
.......++..+.- ..+.+. ...+......+++.+++....+.+.+| +||++.+..+..+..+..++.-.....
T Consensus 256 ~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~ 335 (461)
T KOG3098|consen 256 TSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPN 335 (461)
T ss_pred HHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccc
Confidence 22333444444332 223332 334555666778888888888888765 578888877777766666555443221
Q ss_pred hhh----------hhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHH
Q psy12242 384 VEI----------FVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLP 449 (498)
Q Consensus 384 ~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 449 (498)
..+ ..........+....+..........+.++...+ ++.|.++.++.-....+.+.++-...+.
T Consensus 336 dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~ 410 (461)
T KOG3098|consen 336 DAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPY 410 (461)
T ss_pred cCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 110 0122444455555566666666777788888888 4667888888777777777666555443
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.9e-11 Score=116.44 Aligned_cols=161 Identities=8% Similarity=-0.038 Sum_probs=119.0
Q ss_pred hHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhH
Q psy12242 311 INAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMS 390 (498)
Q Consensus 311 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (498)
........|.+.+++|.++.+.++..+...++..++.++.|+++||+|||+.+..+..+..++.+..... .+
T Consensus 26 ~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~--------~~ 97 (471)
T PRK10504 26 TTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALS--------GT 97 (471)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHh--------CC
Confidence 3455667788888999999999999888889999999999999999999999888777776666554332 11
Q ss_pred HHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh-HHHHHHHHHHHHH
Q psy12242 391 IFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIHG-YVFTIFAVLQAMF 469 (498)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~-~~~~~~~~~~~~~ 469 (498)
...+.....+.+.......+....+..|.+|++.|+++.|+.+....++..++|.+.+.+.+..++ +.+.+....+.+.
T Consensus 98 ~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~ 177 (471)
T PRK10504 98 LNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIG 177 (471)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 122222233333333334567777888999999999999999999999999999999999998886 4555555555555
Q ss_pred HHHHHHhccC
Q psy12242 470 VLFIYKKVPE 479 (498)
Q Consensus 470 ~~~~~~~~~~ 479 (498)
.+......++
T Consensus 178 ~~~~~~~~~~ 187 (471)
T PRK10504 178 AIATLMLMPN 187 (471)
T ss_pred HHHHHHhCCC
Confidence 5555544444
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.4e-10 Score=111.85 Aligned_cols=160 Identities=14% Similarity=0.073 Sum_probs=114.3
Q ss_pred HHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHH
Q psy12242 314 VIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFC 393 (498)
Q Consensus 314 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (498)
.....|.+.+++|.++.+.++......++..++.++.|+++||+|||+.+..+.....++.+..... .....
T Consensus 27 ~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~--------~~~~~ 98 (394)
T PRK11652 27 YVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFA--------HSLTV 98 (394)
T ss_pred HhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH--------ccHHH
Confidence 3344577788899999999999999999999999999999999999999988877777666655432 11122
Q ss_pred HHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh-HHHHHHHHHHHHHHHH
Q psy12242 394 IILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIHG-YVFTIFAVLQAMFVLF 472 (498)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~-~~~~~~~~~~~~~~~~ 472 (498)
+.....+.+.......+....+..|.++++.++.+.+..+....++..++|.+.+.+.+..++ ..+.+.++..++..++
T Consensus 99 l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~ 178 (394)
T PRK11652 99 LIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFS 178 (394)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHH
Confidence 222222222222222345556777888888999999999988889999999999999887776 3555555555544444
Q ss_pred HHHhccCCC
Q psy12242 473 IYKKVPETK 481 (498)
Q Consensus 473 ~~~~~~~~~ 481 (498)
...+.||++
T Consensus 179 ~~~~~~~~~ 187 (394)
T PRK11652 179 MARWMPETR 187 (394)
T ss_pred HHHhCCccC
Confidence 455566654
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.7e-11 Score=118.34 Aligned_cols=166 Identities=12% Similarity=-0.027 Sum_probs=123.0
Q ss_pred hhchHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhh
Q psy12242 308 LSGINAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIF 387 (498)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (498)
..-......-.|.+.+++|.+..+.++..+.+.++..++.+..|+++||+|||+.+..+..+..++.+.....
T Consensus 19 ~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a------- 91 (495)
T PRK14995 19 AIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFS------- 91 (495)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHc-------
Confidence 3334556666788889999999999999999999999999999999999999999999998888887776653
Q ss_pred hhHHHHHHHHHHHHHHHhcCccchhhhhhccc-CCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh-HHHHHHHHH
Q psy12242 388 VMSIFCIILVIMFVVFFAVGPGSIPWFLVSEL-FSQSARPLATSLAVSINWTANFIVGLGFLPIESIIHG-YVFTIFAVL 465 (498)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~-~~~~~~~~~ 465 (498)
.+...++..-.+.+.......+.......+. .|+++|+++.|+......+|..++|.+.+.+.+..+| +.+++...+
T Consensus 92 -~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~ 170 (495)
T PRK14995 92 -PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPI 170 (495)
T ss_pred -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHH
Confidence 1222222222333333333344444444454 4778999999999999999999999999999998887 566666666
Q ss_pred HHHHHHHHHHhccCCC
Q psy12242 466 QAMFVLFIYKKVPETK 481 (498)
Q Consensus 466 ~~~~~~~~~~~~~~~~ 481 (498)
+++..++.....|+.+
T Consensus 171 ~~~~~~l~~~~l~~~~ 186 (495)
T PRK14995 171 VLVVMGLTARYVPRQA 186 (495)
T ss_pred HHHHHHHHHHhCCCCC
Confidence 6666666666666543
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.1e-10 Score=114.41 Aligned_cols=162 Identities=13% Similarity=0.051 Sum_probs=108.5
Q ss_pred HHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHH
Q psy12242 314 VIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFC 393 (498)
Q Consensus 314 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (498)
+....|++.++ |++..+.++..+...++..++.++.|+++||+|||+++..+..+.++..+.+.+.... ......
T Consensus 48 ~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~----~~~~~~ 122 (452)
T PRK11273 48 FALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA----TSSIAV 122 (452)
T ss_pred HHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcc----cccHHH
Confidence 44566777776 9999999999999999999999999999999999999998888887777666553211 011222
Q ss_pred HHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHH-HHHhHHHHHHhhhh-HHHHHHHHHHHHHHH
Q psy12242 394 IILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFI-VGLGFLPIESIIHG-YVFTIFAVLQAMFVL 471 (498)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~-~~~~~~~l~~~~g~-~~~~~~~~~~~~~~~ 471 (498)
+.....+.+.+.....+.....+.|.+|+++|++++|+.+....+++.+ ++.+...+....+| ..+++.+++.++..+
T Consensus 123 ~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~ 202 (452)
T PRK11273 123 MFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVAL 202 (452)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 2222222333333334545556778899999999999998888887654 44433233223344 355555555566555
Q ss_pred HHHHhccCC
Q psy12242 472 FIYKKVPET 480 (498)
Q Consensus 472 ~~~~~~~~~ 480 (498)
+..++.||+
T Consensus 203 l~~~~~~~~ 211 (452)
T PRK11273 203 FAFAMMRDT 211 (452)
T ss_pred HHHHHccCC
Confidence 555556654
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1e-10 Score=113.33 Aligned_cols=160 Identities=14% Similarity=0.122 Sum_probs=116.1
Q ss_pred HHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHH
Q psy12242 314 VIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFC 393 (498)
Q Consensus 314 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (498)
+....+.+.+++|.++.+.+.......++..++.++.|+++||+|||+.+..+.....++.+...... +...
T Consensus 32 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~--------~~~~ 103 (406)
T PRK15402 32 IQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQ--------SIEQ 103 (406)
T ss_pred HhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHc--------cHHH
Confidence 33344566788999999999999999999999999999999999999999888777777666654421 1122
Q ss_pred HHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh-HHHHHHHHHHHHHHHH
Q psy12242 394 IILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIHG-YVFTIFAVLQAMFVLF 472 (498)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~-~~~~~~~~~~~~~~~~ 472 (498)
+.....+.+.......+.......|.+|++.|.+..++......++..++|.+.+.+.+..++ +.+++.+++.++..+.
T Consensus 104 l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~ 183 (406)
T PRK15402 104 FTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFG 183 (406)
T ss_pred HHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHH
Confidence 222222222222223356667788999999999999998888888999999999998887776 4566666666666555
Q ss_pred HHHhccCCC
Q psy12242 473 IYKKVPETK 481 (498)
Q Consensus 473 ~~~~~~~~~ 481 (498)
.+...||++
T Consensus 184 ~~~~~~~~~ 192 (406)
T PRK15402 184 LWRAMPETA 192 (406)
T ss_pred HHHhCCCCC
Confidence 555566654
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.32 E-value=5e-11 Score=116.44 Aligned_cols=162 Identities=14% Similarity=0.040 Sum_probs=112.8
Q ss_pred HHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHH
Q psy12242 314 VIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFC 393 (498)
Q Consensus 314 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (498)
.....|++.+ .|.++.+.++..+...++..++.++.|++.||+|||+.+..+..+.+++.+.+...... ......
T Consensus 46 ~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 120 (438)
T TIGR00712 46 FALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWA----TSSIAI 120 (438)
T ss_pred HHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccc----cchHHH
Confidence 3445666665 59999999999999999999999999999999999999988877777776665432111 011222
Q ss_pred HHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHh-hhh-HHHHHHHHHHHHHHH
Q psy12242 394 IILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESI-IHG-YVFTIFAVLQAMFVL 471 (498)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~-~g~-~~~~~~~~~~~~~~~ 471 (498)
+....+..+.......+.....+.|.+|+++|++++|+.+....+++.+++.+.+...+. .+| ..+++.++++++..+
T Consensus 121 l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~ 200 (438)
T TIGR00712 121 MFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVAL 200 (438)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 222222233333333355566777999999999999999999999999998887765543 455 455565666666555
Q ss_pred HHHHhccCC
Q psy12242 472 FIYKKVPET 480 (498)
Q Consensus 472 ~~~~~~~~~ 480 (498)
+.+++.+|+
T Consensus 201 ~~~~~~~~~ 209 (438)
T TIGR00712 201 FAFAMMRDT 209 (438)
T ss_pred HHHHhccCC
Confidence 555555553
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=8.2e-11 Score=113.40 Aligned_cols=139 Identities=10% Similarity=-0.128 Sum_probs=99.3
Q ss_pred HHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q psy12242 320 KIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIM 399 (498)
Q Consensus 320 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (498)
++.+++|.|..+.++..+...+...+++++.|+++||+|||+.+..+.+...++.+...............+..+.+.-.
T Consensus 41 ~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 120 (392)
T PRK12382 41 FVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRL 120 (392)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHH
Confidence 34578899999999999999999999999999999999999999888776665543332211111000112222223333
Q ss_pred HHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhHH
Q psy12242 400 FVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIHGYV 458 (498)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~~~ 458 (498)
+.+.......+....+..|..|+++|+++++........+..++|.+.+.+.+..++..
T Consensus 121 l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~ 179 (392)
T PRK12382 121 ILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAA 179 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHH
Confidence 33333333335555677899999999999999998888999999999999988777643
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=9.3e-11 Score=113.40 Aligned_cols=157 Identities=15% Similarity=0.092 Sum_probs=115.3
Q ss_pred hHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q psy12242 317 FSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIIL 396 (498)
Q Consensus 317 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (498)
-.|.+.++++.+..+.+...+.+.++..++.++.|+++||+|||+++..+..+..++.+..... .+...+..
T Consensus 38 ~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a--------~~~~~l~~ 109 (413)
T PRK15403 38 GIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT--------TSMTQFLI 109 (413)
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc--------CCHHHHHH
Confidence 3445667889999999999999999999999999999999999999988887777766655542 11222222
Q ss_pred HHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh-HHHHHHHHHHHHHHHHHHH
Q psy12242 397 VIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIHG-YVFTIFAVLQAMFVLFIYK 475 (498)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~-~~~~~~~~~~~~~~~~~~~ 475 (498)
.-++.+.......+....+..|.+|++.+++.+++.+....++..++|.+.+.+.+..+| +.+++.+++.++..+..++
T Consensus 110 ~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~ 189 (413)
T PRK15403 110 ARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLL 189 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222222345566788999999999999999999999999999999998887776 4666666666666555555
Q ss_pred hccCCC
Q psy12242 476 KVPETK 481 (498)
Q Consensus 476 ~~~~~~ 481 (498)
..||++
T Consensus 190 ~lp~~~ 195 (413)
T PRK15403 190 AMPETV 195 (413)
T ss_pred hCCCCc
Confidence 567754
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.7e-11 Score=114.51 Aligned_cols=159 Identities=14% Similarity=0.062 Sum_probs=119.9
Q ss_pred HHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHH
Q psy12242 314 VIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFC 393 (498)
Q Consensus 314 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (498)
.....|.+.+++|.++.+.++..+...++..++.++.|++.||+|||+.+..+..+..++...+.... ....
T Consensus 10 ~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~--------~~~~ 81 (377)
T PRK11102 10 YLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQ--------TIDQ 81 (377)
T ss_pred HhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHc--------cHHH
Confidence 34455667788899999999999999999999999999999999999999888888877777765431 1112
Q ss_pred HHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh-HHHHHHHHHHHHHHHH
Q psy12242 394 IILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIHG-YVFTIFAVLQAMFVLF 472 (498)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~-~~~~~~~~~~~~~~~~ 472 (498)
+.......+.......+....+..|.+|+++|+++.++.+....++..++|.+.+.+.+..++ ..+.+.+.+.++..++
T Consensus 82 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 161 (377)
T PRK11102 82 LIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAAL 161 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHH
Confidence 222223333333334456677888999999999999999999999999999999999988776 4555666666666555
Q ss_pred HHHhccCC
Q psy12242 473 IYKKVPET 480 (498)
Q Consensus 473 ~~~~~~~~ 480 (498)
.....+|+
T Consensus 162 ~~~~~~~~ 169 (377)
T PRK11102 162 VFFFIPET 169 (377)
T ss_pred HHHhCCcc
Confidence 55556654
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.7e-11 Score=117.05 Aligned_cols=162 Identities=13% Similarity=0.090 Sum_probs=118.9
Q ss_pred chHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhh
Q psy12242 310 GINAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVM 389 (498)
Q Consensus 310 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (498)
.........|.+.+++|.+..+.+.......++..++.++.|++.||+|||+.+..+..+.+++.+.+.+..
T Consensus 35 ~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-------- 106 (496)
T PRK03893 35 DFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAP-------- 106 (496)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHh--------
Confidence 344555666778888999999999999999999999999999999999999999888888877777666531
Q ss_pred HHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHH
Q psy12242 390 SIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIHGYVFTIFAVLQAMF 469 (498)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~ 469 (498)
++..+.....+.++...+..+....++.|.+|++.|+++.++......+|..+++.+.+.+.+..++...+..+.+..+.
T Consensus 107 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~~~ 186 (496)
T PRK03893 107 GYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPIIF 186 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 22222333333444444445666778889999999999999999999999999999999998887775443333333333
Q ss_pred HHHHHHhccC
Q psy12242 470 VLFIYKKVPE 479 (498)
Q Consensus 470 ~~~~~~~~~~ 479 (498)
.++.....||
T Consensus 187 ~~~~~~~~p~ 196 (496)
T PRK03893 187 ALWLRKNLPE 196 (496)
T ss_pred HHHHHHhCCC
Confidence 3333333444
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.6e-11 Score=117.77 Aligned_cols=162 Identities=13% Similarity=0.090 Sum_probs=120.9
Q ss_pred hHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhH
Q psy12242 311 INAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMS 390 (498)
Q Consensus 311 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (498)
........|++.+++|.+..+.++..+...++..++.++.|+++||+|||+.+..+..+..++.++..+.. .
T Consensus 11 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--------~ 82 (379)
T TIGR00881 11 RKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFST--------S 82 (379)
T ss_pred HHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhh--------h
Confidence 34556667788888999999999999999999999999999999999999999999888888777766532 2
Q ss_pred HHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHH-hHHHHHHhhhh-HHHHHHHHHHHH
Q psy12242 391 IFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGL-GFLPIESIIHG-YVFTIFAVLQAM 468 (498)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~-~~~~l~~~~g~-~~~~~~~~~~~~ 468 (498)
...+.....+.+.......+...++..|.+|+++|+++.++.+....+|..+++. +.+.+.+..++ ..+.+.+.+.++
T Consensus 83 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (379)
T TIGR00881 83 LWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAII 162 (379)
T ss_pred HHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 2233333334444444456777888899999999999999999999999999994 55556565565 455555555555
Q ss_pred HHHHHHHhccCC
Q psy12242 469 FVLFIYKKVPET 480 (498)
Q Consensus 469 ~~~~~~~~~~~~ 480 (498)
..++.+.+.+|+
T Consensus 163 ~~~~~~~~~~~~ 174 (379)
T TIGR00881 163 VSLICFLLLRDS 174 (379)
T ss_pred HHHHHheeeCCC
Confidence 555555555543
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.4e-10 Score=111.83 Aligned_cols=153 Identities=14% Similarity=0.093 Sum_probs=110.0
Q ss_pred hHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhH
Q psy12242 311 INAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMS 390 (498)
Q Consensus 311 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (498)
........|.+.+++|+|..+.+...+...++..++.++.|++.||+|||+.+..+..+..++.+...+.. +
T Consensus 23 ~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~--------~ 94 (394)
T PRK03699 23 VIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSH--------S 94 (394)
T ss_pred HHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcc--------h
Confidence 34555667778889999999999999999999999999999999999999998888877777766655421 1
Q ss_pred HHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHh-hhh-HHHHHHHHHHHH
Q psy12242 391 IFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESI-IHG-YVFTIFAVLQAM 468 (498)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~-~g~-~~~~~~~~~~~~ 468 (498)
.........+.+.......+....++.|.+|++.|++..+..+....+++.++|.+.+.+.+. .+| +.+...+++.++
T Consensus 95 ~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~ 174 (394)
T PRK03699 95 LALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVA 174 (394)
T ss_pred HHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 122222222223222223355566778999999999999998888888999999998887654 455 345555555444
Q ss_pred HHH
Q psy12242 469 FVL 471 (498)
Q Consensus 469 ~~~ 471 (498)
..+
T Consensus 175 ~~~ 177 (394)
T PRK03699 175 IFI 177 (394)
T ss_pred HHH
Confidence 433
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.9e-10 Score=112.91 Aligned_cols=174 Identities=11% Similarity=-0.008 Sum_probs=123.7
Q ss_pred hHHHHHHHHHHHHhhchHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhc-cCCceehhhhhHHHHHH
Q psy12242 295 PLFISMTVMVAQQLSGINAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEI-SGRKTLLLIGFMGVFVV 373 (498)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~ 373 (498)
.++..+...+...++.+....+...++.+++|++..++.+....+.....+..+++|+++|| +|||+.+..+..+..++
T Consensus 15 ~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g 94 (489)
T PRK10207 15 PFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIG 94 (489)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHH
Confidence 44555555555666666666666667778889999999888888887888888899999999 99999999999999998
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCCh--hhHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy12242 374 TVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSA--RPLATSLAVSINWTANFIVGLGFLPIE 451 (498)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~~~~~~~~~~~~l~ 451 (498)
.+.+.+... .. ..+.......+.......|...+++.|.+|++. |+.++++.+...++|..++|.+.|++.
T Consensus 95 ~~~~~~~~~------~~-~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~ 167 (489)
T PRK10207 95 YFMTGMSLL------KP-DLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIA 167 (489)
T ss_pred HHHHHHhcc------ch-hHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 877765321 01 112122223334444455677788999998774 577899999999999999999999999
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHH
Q psy12242 452 SIIHGYVFTIFAVLQAMFVLFIYK 475 (498)
Q Consensus 452 ~~~g~~~~~~~~~~~~~~~~~~~~ 475 (498)
+..||...+....+.++..++.+.
T Consensus 168 ~~~gw~~~F~i~~i~~~~~~~~~~ 191 (489)
T PRK10207 168 DKFGYSVTYNLCGAGLIIALLVYF 191 (489)
T ss_pred HhhChHHHHHHHHHHHHHHHHHHH
Confidence 998874333333334443333333
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.5e-11 Score=115.77 Aligned_cols=149 Identities=14% Similarity=0.008 Sum_probs=108.7
Q ss_pred HHHHHhHHHHH-hh--cCCCchhHHHHHHHHHHHHHHHHHhhhhhhhc-cCCceehhhhhHHHHHHHHHHHHHHHHhhhh
Q psy12242 312 NAVIYFSTKIF-TM--AQLSDTAAQWATLGMGTMNVVMTLVSLVLVEI-SGRKTLLLIGFMGVFVVTVLLTIVMQFVEIF 387 (498)
Q Consensus 312 ~~~~~~~~~~~-~~--~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (498)
+....+.+.++ ++ +|++..+++.......+...++.+++|+++|| +|||+.+..+..+.+++.+.+.+..
T Consensus 27 ~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~------ 100 (475)
T TIGR00924 27 YGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSI------ 100 (475)
T ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcc------
Confidence 33444444444 44 79999999999999999999999999999999 8999999999988888877766521
Q ss_pred hhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCCh---hhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhH-HHHHHH
Q psy12242 388 VMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSA---RPLATSLAVSINWTANFIVGLGFLPIESIIHGY-VFTIFA 463 (498)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~~-~~~~~~ 463 (498)
....+.....+.+.......+...++.+|.+|++. |+++.++.+...++|..++|.+.+.+.+..++. .+.+.+
T Consensus 101 --~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~ 178 (475)
T TIGR00924 101 --YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAA 178 (475)
T ss_pred --cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 11111222222333333345666778888888754 888999999999999999999999999987863 444444
Q ss_pred HHHHH
Q psy12242 464 VLQAM 468 (498)
Q Consensus 464 ~~~~~ 468 (498)
+..++
T Consensus 179 ~~~~~ 183 (475)
T TIGR00924 179 VGMVI 183 (475)
T ss_pred HHHHH
Confidence 33333
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.3e-10 Score=109.56 Aligned_cols=149 Identities=13% Similarity=0.006 Sum_probs=106.8
Q ss_pred HHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q psy12242 319 TKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVI 398 (498)
Q Consensus 319 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (498)
|.+.++.|.++.+.++..+...++..++.++.|+++||+|||+.+..+..+..++.+...+.. ....+....
T Consensus 30 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--------~~~~l~~~~ 101 (401)
T PRK11043 30 KAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVE--------SAAQLLVLR 101 (401)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhc--------CHHHHHHHH
Confidence 446678899999999999999999999999999999999999999888777766665554421 111222222
Q ss_pred HHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhH-HHHHHHHHHHHHHHHHHH
Q psy12242 399 MFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIHGY-VFTIFAVLQAMFVLFIYK 475 (498)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~~-~~~~~~~~~~~~~~~~~~ 475 (498)
.+.+.......+....+..|.+|++.+++..+..+....++..++|.+.+.+.+..++. .+.+.+++.++..+..+.
T Consensus 102 ~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 179 (401)
T PRK11043 102 FVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLR 179 (401)
T ss_pred HHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence 22222222223444567789999998999999988888899999999999999888864 455555555554444433
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.1e-10 Score=110.45 Aligned_cols=162 Identities=9% Similarity=-0.025 Sum_probs=113.9
Q ss_pred hHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhH
Q psy12242 311 INAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMS 390 (498)
Q Consensus 311 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (498)
...+....|.+.+++|.++.+.++..+...++..++.+..|++.||+|||+.+.........+. ..... ..+
T Consensus 7 ~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~-~~~~~-------~~~ 78 (368)
T TIGR00903 7 WVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAA-GRLLD-------PFN 78 (368)
T ss_pred HHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHH-HHHHH-------hcc
Confidence 3456667788889999999999999999999999999999999999999887654433332221 11111 011
Q ss_pred HHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhH-HHHHHHHHHHHH
Q psy12242 391 IFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIHGY-VFTIFAVLQAMF 469 (498)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~~-~~~~~~~~~~~~ 469 (498)
+..+...-+..+.... .........+|.+|+++|+++.++.+....+|..+++.+.+.+.+..+|. .+.+.+++.++.
T Consensus 79 ~~~l~~~R~l~G~g~~-~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~ 157 (368)
T TIGR00903 79 YEWLLACQLLAALGQP-FLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAG 157 (368)
T ss_pred HHHHHHHHHHHHhHhH-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHH
Confidence 2222222222222222 22334445578999999999999999999999999999999999888874 555657777777
Q ss_pred HHHHHHhccCCC
Q psy12242 470 VLFIYKKVPETK 481 (498)
Q Consensus 470 ~~~~~~~~~~~~ 481 (498)
.++.+...||.+
T Consensus 158 ~~~~~~~lp~~p 169 (368)
T TIGR00903 158 IILVLAALPALP 169 (368)
T ss_pred HHHHHHHcCCCC
Confidence 776777777654
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.5e-10 Score=109.02 Aligned_cols=135 Identities=15% Similarity=0.064 Sum_probs=101.8
Q ss_pred chHHHHHhHH-HHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhh
Q psy12242 310 GINAVIYFST-KIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFV 388 (498)
Q Consensus 310 ~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (498)
.......+.| ++.+++|+++.+.++......++..++.++.|+++||+|||+.+..+..+..++.+.+.+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~------ 89 (366)
T TIGR00886 16 VWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQ------ 89 (366)
T ss_pred HHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhh------
Confidence 3445566666 477889999999999999999999999999999999999999999988888888776655320
Q ss_pred hHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy12242 389 MSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIES 452 (498)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~ 452 (498)
.+..+....++.+... +..+....++.|.+|+++|+++.++......+|..+++.+.+.+..
T Consensus 90 -~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~ 151 (366)
T TIGR00886 90 -SYSVLLLLRLFIGIAG-GSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIG 151 (366)
T ss_pred -hHHHHHHHHHHHHHhc-hhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 1222222222223222 2234456788899999999999999998888888888888877665
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.2e-11 Score=114.12 Aligned_cols=137 Identities=18% Similarity=0.115 Sum_probs=119.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhh
Q psy12242 80 IEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGL 159 (498)
Q Consensus 80 ~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 159 (498)
.++.+. |++.+...++..++.++.+++.||+|+|+.+.++.++..+..++.+++ ++.+.+++.+++.|++.+.
T Consensus 237 ~s~~~~----g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~q~l~g~~~~~ 309 (382)
T TIGR00902 237 ISASAT----GLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAI---EAFPLIFLLQILHCGTFAV 309 (382)
T ss_pred CCHhHH----HHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhH---hhHHHHHHHHHHHHHHHHH
Confidence 677777 888999999999999999999999999999999999999999999888 9999999999999999999
Q ss_pred hhcchhhhhhccCcccchhhhHhHHH-HHHHHHHHHHHHHhcCcccCCCCchhHHHHhhhHHHHHHHhh
Q psy12242 160 NAGLAPMYLAEISPVHLRGAVGTVYQ-LVITISIVISQILGLGGLLGTADGWPLLLAFTLVPGIYQMIT 227 (498)
Q Consensus 160 ~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~ 227 (498)
..+....++.+. |+++|++..++++ ...++|.++++. .++.+.++.++ ..|++.+++.++.++.
T Consensus 310 ~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~--~~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 310 CHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTA--FAGFIYPTLGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 999999999998 9899999999986 567899999999 55688888886 5666666666555444
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.4e-10 Score=103.38 Aligned_cols=176 Identities=11% Similarity=0.044 Sum_probs=131.5
Q ss_pred HHHHHHHHHHHhhchHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHH
Q psy12242 297 FISMTVMVAQQLSGINAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVL 376 (498)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~ 376 (498)
+......+..+++......-..+.+.+++|+|+.|.+++..+..+.+.+.+++.|.+.||+|.|+....+.++..+-.+.
T Consensus 16 L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~ 95 (417)
T COG2223 16 LWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLG 95 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHH
Confidence 34444444445555666677777777899999999999999999999999999999999999999999999888888888
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhh-
Q psy12242 377 LTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIH- 455 (498)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g- 455 (498)
+.+....++ +..++.+.++.+ ...+.......++++.+|++++|.++|+.. .+++|..+...+.+.+....+
T Consensus 96 ~~~a~~~~~-----~~~ll~~gll~G-~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~ 168 (417)
T COG2223 96 LAFAVTYPS-----TWQLLVIGLLLG-LAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGF 168 (417)
T ss_pred HHHHccCCc-----hHHHHHHHHHHh-cccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhh
Confidence 777654322 122222233332 333344666778899999999999999998 999999999999999998888
Q ss_pred --h-HHHHHHHHHHHHHHHHHHHhccC
Q psy12242 456 --G-YVFTIFAVLQAMFVLFIYKKVPE 479 (498)
Q Consensus 456 --~-~~~~~~~~~~~~~~~~~~~~~~~ 479 (498)
+ ....+.....++..+..++..++
T Consensus 169 ~~w~~~~~i~~~~l~v~~v~~~~~~~d 195 (417)
T COG2223 169 LAWRNVAGIYVVALAIAAVLAWLGMND 195 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4 34555555556656666665543
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.4e-11 Score=115.86 Aligned_cols=143 Identities=13% Similarity=0.163 Sum_probs=102.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhh
Q psy12242 80 IEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGL 159 (498)
Q Consensus 80 ~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 159 (498)
.+..+. ++..+...++..++.+++|+++||+|||+.++....+..++..+..+. ..++.+...+.+++.|++...
T Consensus 291 ~s~~~a----~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~G~~~~~ 365 (467)
T PRK09556 291 FSKEDA----INTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQ-HATSEYMYLASLFALGFLVFG 365 (467)
T ss_pred CCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHHHHhh
Confidence 677777 888899999999999999999999999988776554444433222221 115666677888888865433
Q ss_pred hhcchhhhhhccCcccchhhhHhHHHHHHHH-HHHHHHHHhcCcccCC------------CCchhHHHHhhhHHHHHHHh
Q psy12242 160 NAGLAPMYLAEISPVHLRGAVGTVYQLVITI-SIVISQILGLGGLLGT------------ADGWPLLLAFTLVPGIYQMI 226 (498)
Q Consensus 160 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~i~~~~~~~~------------~~~wr~~f~~~~~~~~~~~~ 226 (498)
..........|.+|+++||++.|+.+...++ |..++|.+ .+.+.+ ..+|+..|++..+..++..+
T Consensus 366 ~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~--~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~ 443 (467)
T PRK09556 366 PQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVG--LGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCIC 443 (467)
T ss_pred HHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhh--HHHHhcccccccccccccccChHHHHHHHHHHHHHHHH
Confidence 3333345677999999999999999988886 76777773 334444 56799999887666666554
Q ss_pred hcc
Q psy12242 227 TLP 229 (498)
Q Consensus 227 ~~~ 229 (498)
..+
T Consensus 444 ~~~ 446 (467)
T PRK09556 444 LMA 446 (467)
T ss_pred HHH
Confidence 444
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.6e-11 Score=118.78 Aligned_cols=138 Identities=16% Similarity=0.167 Sum_probs=110.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh--ccchhhHH--HHHHHHHHHHHHhhhhccchhHHHHHHHHHHHh
Q psy12242 80 IEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERF--GRKGGLLI--NNVFVVLAALLQGFSKAFSSYEMIILGRFLIGI 155 (498)
Q Consensus 80 ~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~--Grr~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~ 155 (498)
.+..+. +++.++..++..+++++.|+++||. ++|+...+ +.++.+++.++..+. ++++.+++.+++.|+
T Consensus 273 ~s~~~~----g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~---~~~~~~~i~~~~~G~ 345 (455)
T TIGR00892 273 VDEYEA----AFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALA---GDYTGLVIYCIFFGL 345 (455)
T ss_pred CCHHHH----HHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHh---chHHHHHHHHHHHHH
Confidence 566666 8899999999999999999999984 34433333 334444555555666 788889999999999
Q ss_pred hhhhhhcchhhhhhccCcccchhhhHhHHHHHHHHHHHHHHHHhcCcccCCCC-chhHHHHhhhHHHHHHHh
Q psy12242 156 NSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLLGTAD-GWPLLLAFTLVPGIYQMI 226 (498)
Q Consensus 156 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~-~wr~~f~~~~~~~~~~~~ 226 (498)
+.+...+...+++.|.+|++++++.+++++...++|..+||. ..+.+.+.. +|+..|++.++..++..+
T Consensus 346 ~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~--i~G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 346 SFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPP--LAGRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHcccc--ceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999 555666655 699999988776655543
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.4e-11 Score=117.20 Aligned_cols=136 Identities=17% Similarity=0.235 Sum_probs=103.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhhHHHHHHHHHHHH--HHhhhhccchhHHHHHHHHHHHhhh
Q psy12242 80 IEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAAL--LQGFSKAFSSYEMIILGRFLIGINS 157 (498)
Q Consensus 80 ~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~r~l~G~~~ 157 (498)
.++.+. ++..+...++..++.++.|+++||+|||+.+..+..+..+..+ ...+. ..++.+.+++..++.|++.
T Consensus 252 ~~~~~~----~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~ 326 (394)
T TIGR00883 252 LSANSA----LLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALL-DSGSFTLFFFLVLGLALIG 326 (394)
T ss_pred CChhHH----HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHHH
Confidence 566666 8888899999999999999999999999987765554444332 22221 1146677778889999999
Q ss_pred hhhhcchhhhhhccCcccchhhhHhHH-HHHHHHHHHHHHHHhcCcccCCCCc-hhHHHHhhhHHHH
Q psy12242 158 GLNAGLAPMYLAEISPVHLRGAVGTVY-QLVITISIVISQILGLGGLLGTADG-WPLLLAFTLVPGI 222 (498)
Q Consensus 158 g~~~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~g~~~~~~i~~~~~~~~~~~-wr~~f~~~~~~~~ 222 (498)
+...+...+++.|.+|+++|+++.++. ..+..+|..++|.+ .+.+.++.+ |+..++..++..+
T Consensus 327 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~--~g~l~~~~g~~~~~~~~~~~~~l 391 (394)
T TIGR00883 327 GMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYI--AAALVAMTGDWYAIGYYLAALAL 391 (394)
T ss_pred HHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHH--HHHHHHHcCcchhHHHHHHHHHH
Confidence 889999999999999999999999984 56667888888884 446666666 8887776655444
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.5e-10 Score=110.22 Aligned_cols=137 Identities=12% Similarity=-0.088 Sum_probs=96.5
Q ss_pred HhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q psy12242 316 YFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCII 395 (498)
Q Consensus 316 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (498)
.+.+.+.++.|.++.+.+...+...++..++.++.|++.||+|||+.+..+..+..++.+......... ..+..+.
T Consensus 34 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~l~ 109 (402)
T TIGR00897 34 GWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGH----ANYPLIL 109 (402)
T ss_pred HhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccC----ccHHHHH
Confidence 344555578899999999999999999999999999999999999999888888777655432211100 1111212
Q ss_pred HHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHH-HHHHHhHHHHHHhhhh
Q psy12242 396 LVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTAN-FIVGLGFLPIESIIHG 456 (498)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~-~~~~~~~~~l~~~~g~ 456 (498)
....+.+.......+.......+.+|+++|++++|+.+....+|. .++|.+.+.+.+..++
T Consensus 110 ~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~ 171 (402)
T TIGR00897 110 LFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGE 171 (402)
T ss_pred HHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccch
Confidence 222222222222223444566788899999999999999998886 5788888888877664
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=9.7e-10 Score=105.64 Aligned_cols=154 Identities=8% Similarity=0.027 Sum_probs=111.6
Q ss_pred HHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q psy12242 315 IYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCI 394 (498)
Q Consensus 315 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (498)
....+...++.+.++.+.++......+...+..++.|++.||+|||+++..+..+.+++.+.+.... ..
T Consensus 23 ~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~-------~~---- 91 (393)
T PRK11195 23 LFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGI-------HP---- 91 (393)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHH-------HH----
Confidence 3333445677888888899999999999999999999999999999999999888877666544321 11
Q ss_pred HHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q psy12242 395 ILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIHGYVFTIFAVLQAMFVLFIY 474 (498)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~ 474 (498)
....++.+.......|...+++.|.+|+++|++++|+.+.....+..++|.+.|.+.+......+.+.+.+.++. .+..
T Consensus 92 ~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~~~~~~~-~~~~ 170 (393)
T PRK11195 92 LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVCALIYLLA-ALFN 170 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 112233444445566888889999999999999999999999999999999999998864223333333332222 3334
Q ss_pred HhccCC
Q psy12242 475 KKVPET 480 (498)
Q Consensus 475 ~~~~~~ 480 (498)
...||.
T Consensus 171 ~~l~~~ 176 (393)
T PRK11195 171 LFIPRL 176 (393)
T ss_pred hcCCCC
Confidence 445553
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.4e-09 Score=104.10 Aligned_cols=151 Identities=9% Similarity=-0.026 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHhhchHHHHHhHHHHHh-hcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHH
Q psy12242 297 FISMTVMVAQQLSGINAVIYFSTKIFT-MAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTV 375 (498)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~ 375 (498)
+......+...+.......-..+.+.+ ++|++..+.++..++..+...++++..|++.||+|.|++...+..+..+..+
T Consensus 36 l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~ 115 (462)
T PRK15034 36 LWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCV 115 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 444444444455445555555555554 7899999999999999999999999999999999999999888888777776
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy12242 376 LLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIE 451 (498)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~ 451 (498)
...+..... ..++..+..+.++.+.. .+..+.....+++.+|+++||++.|+....+++|..+++.+.+.+.
T Consensus 116 ~~~~a~~~~---~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i 187 (462)
T PRK15034 116 WLGIAVQNP---NTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVI 187 (462)
T ss_pred HHHHHHccc---CCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 665431100 12233333333333333 3344666778889999999999999998777788877776666544
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.1e-10 Score=110.07 Aligned_cols=169 Identities=8% Similarity=0.016 Sum_probs=109.8
Q ss_pred hHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhc-cCCceeh
Q psy12242 285 EMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEI-SGRKTLL 363 (498)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~ 363 (498)
+.+++|+ .++..+...++..+..+....+...++.+++|++..+++..............+++|+++|| +|||+.+
T Consensus 15 ~~~~~p~---~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~ 91 (500)
T PRK09584 15 NAFKQPK---AFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVI 91 (500)
T ss_pred hhhcCCc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHH
Confidence 4455552 23344444444444444444455555558889999888777766665555556789999999 5999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCCh--hhHHHHHHHHHHHHHHH
Q psy12242 364 LIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSA--RPLATSLAVSINWTANF 441 (498)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~~~~ 441 (498)
..+..+..++...+.+.. .....+.......+.......+...++..|.+|++. +..+.++.+...++|..
T Consensus 92 ~~g~~~~~ig~~l~~~~~-------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~ 164 (500)
T PRK09584 92 MLGAIVLAIGYALVAWSG-------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSF 164 (500)
T ss_pred HHHHHHHHHHHHHHHHhc-------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHH
Confidence 999888887766665421 111111122222223333344666678889998653 45678888999999999
Q ss_pred HHHHhHHHHHHhhhhH-HHHHHH
Q psy12242 442 IVGLGFLPIESIIHGY-VFTIFA 463 (498)
Q Consensus 442 ~~~~~~~~l~~~~g~~-~~~~~~ 463 (498)
++|.+.|++.+..|+. .|.+.+
T Consensus 165 ~gp~i~g~l~~~~g~~~~F~i~~ 187 (500)
T PRK09584 165 FSMLATPWLAAKYGWSVAFALSV 187 (500)
T ss_pred HHHHHHHHHHHhhCHHHHHHHHH
Confidence 9999999999988874 444444
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.4e-10 Score=106.64 Aligned_cols=137 Identities=8% Similarity=-0.063 Sum_probs=104.2
Q ss_pred chHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhh
Q psy12242 310 GINAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVM 389 (498)
Q Consensus 310 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (498)
.......+.|.+.++.|.|..++++..+...++..++.++.|+++||+|||+.+..+..+.+++.....+. .
T Consensus 21 ~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~--------~ 92 (381)
T PRK03633 21 AIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLM--------V 92 (381)
T ss_pred hhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------c
Confidence 34556667788888899999999999999999999999999999999999999998888888777665542 1
Q ss_pred HHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q psy12242 390 SIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESII 454 (498)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~ 454 (498)
+...+....+..+.......+.......+..++++|+++++.......+|..++|.+.+.+.+..
T Consensus 93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 157 (381)
T PRK03633 93 GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTEL 157 (381)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 22222222333333333333544455567788889999999999999999999999999887653
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.8e-10 Score=112.28 Aligned_cols=150 Identities=9% Similarity=-0.022 Sum_probs=114.2
Q ss_pred hcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q psy12242 324 MAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVF 403 (498)
Q Consensus 324 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (498)
+++++..+.+.+.....++..++.++.|++.||+|||+.+..+.++..+..++..+.. ......++..-++.+.
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~------~~~~~~l~~~r~~~G~ 143 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAA------GGGIALVVFCRVIQGL 143 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHH------HcCchHHHHHHHHHHH
Confidence 5678889999999999999999999999999999999999888877776665543321 1122233444455555
Q ss_pred HhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhh-hh-HHHHHHHHHHHHHHHHHHHhccC
Q psy12242 404 FAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESII-HG-YVFTIFAVLQAMFVLFIYKKVPE 479 (498)
Q Consensus 404 ~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~~ 479 (498)
......+....+..|.+|+++|++++|+.+....+|..+++.+.+.+.+.. ++ ..+.+.+++.++..++.+...++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~ 221 (465)
T TIGR00894 144 AQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPAD 221 (465)
T ss_pred hcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcC
Confidence 556666788889999999999999999999999999999999999998874 76 45666666555555544444443
|
|
| >KOG1330|consensus | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.2e-11 Score=110.96 Aligned_cols=163 Identities=14% Similarity=0.082 Sum_probs=134.8
Q ss_pred hHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q psy12242 317 FSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIIL 396 (498)
Q Consensus 317 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (498)
..+-..+.++.++...|++.....+...+++++.|++.||+.|++++.++..+..++.+.-.+. ..++.+.+
T Consensus 55 v~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs--------~~Fwq~~l 126 (493)
T KOG1330|consen 55 VLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFS--------NHFWQVLL 126 (493)
T ss_pred hhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHH--------HHHHHHHH
Confidence 3344556679999999999999999999999999999999999999999999999988887774 34455555
Q ss_pred HHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh--HHHHHHHHHHHHHHHHHH
Q psy12242 397 VIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIHG--YVFTIFAVLQAMFVLFIY 474 (498)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~--~~~~~~~~~~~~~~~~~~ 474 (498)
+-.+.+..-....|+...+++|.+|.+.|++++++.+.....|+.+|-.+...+.+..++ +.+...+++.++.+++..
T Consensus 127 ~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~ 206 (493)
T KOG1330|consen 127 CRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVF 206 (493)
T ss_pred HHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHH
Confidence 666677777778899999999999999999999999999999998888887777777773 467778888888888888
Q ss_pred HhccCCCCCCHHH
Q psy12242 475 KKVPETKNKTQEE 487 (498)
Q Consensus 475 ~~~~~~~~~~~~~ 487 (498)
++.+|++++..+|
T Consensus 207 ~f~~eP~rga~~~ 219 (493)
T KOG1330|consen 207 LFVREPERGARDE 219 (493)
T ss_pred hhccCcccccccc
Confidence 8888776544333
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.6e-09 Score=106.31 Aligned_cols=123 Identities=11% Similarity=-0.007 Sum_probs=91.1
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhc
Q psy12242 327 LSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAV 406 (498)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (498)
.+..+.+++.....++.+++.++.+++.||+|||+.+..+.++..++.++........ .......++..-++.++...
T Consensus 53 ~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~r~l~G~~~g 130 (502)
T TIGR00887 53 LPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSS--PKSVMATLCFWRFWLGVGIG 130 (502)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcc--cchHHHHHHHHHHHHHHHHh
Confidence 4455667888889999999999999999999999999888887777766555432100 01112233333444444444
Q ss_pred CccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy12242 407 GPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIE 451 (498)
Q Consensus 407 ~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~ 451 (498)
...+....+..|.+|++.|+++.++.+....+|..+++.+...+.
T Consensus 131 ~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~ 175 (502)
T TIGR00887 131 GDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVL 175 (502)
T ss_pred hhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455778889999999999999999999999999999888876554
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.7e-09 Score=107.25 Aligned_cols=155 Identities=12% Similarity=-0.038 Sum_probs=106.5
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHH----hhhhhhHHHHHHHHHHHH
Q psy12242 326 QLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQF----VEIFVMSIFCIILVIMFV 401 (498)
Q Consensus 326 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 401 (498)
+.+..+.++..+...++..++.++.|+++||+|||+++..+..+..++.+...+.... .......+..++..-++.
T Consensus 51 ~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~ 130 (479)
T PRK10077 51 SAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIG 130 (479)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHH
Confidence 7888899999999999999999999999999999999999888877766655432100 000012223333344445
Q ss_pred HHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHH--------HhhhhH-HHHHHHHHHHHHHHH
Q psy12242 402 VFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIE--------SIIHGY-VFTIFAVLQAMFVLF 472 (498)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~--------~~~g~~-~~~~~~~~~~~~~~~ 472 (498)
+....+..+...+++.|.+|+++|++++++.+....+|..+++.+.+.+. +..+|. .+++.++..++. .+
T Consensus 131 G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~-~~ 209 (479)
T PRK10077 131 GIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLF-LM 209 (479)
T ss_pred hhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHH-HH
Confidence 55555556778889999999999999999999888888888876655443 233553 444444444443 33
Q ss_pred HHHhccCCC
Q psy12242 473 IYKKVPETK 481 (498)
Q Consensus 473 ~~~~~~~~~ 481 (498)
..++.||+.
T Consensus 210 ~~~~l~~s~ 218 (479)
T PRK10077 210 LLYFVPETP 218 (479)
T ss_pred HHHcCCCCc
Confidence 345567653
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.4e-09 Score=106.65 Aligned_cols=177 Identities=14% Similarity=0.048 Sum_probs=123.1
Q ss_pred hHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehh
Q psy12242 285 EMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLL 364 (498)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~ 364 (498)
..+|++.++.. +..-....... .....-.+.+..+..-|+...+++.....+-.++.++++|.++||+.||++++
T Consensus 5 aplr~~~Fr~l-w~a~~iS~lG~----~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili 79 (524)
T PF05977_consen 5 APLRNRNFRRL-WIAQLISNLGD----WMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILI 79 (524)
T ss_pred ccccCchHHHH-HHHHHHHHHHH----HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHH
Confidence 34677766643 33333332222 22222233344455677888888888889999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHH
Q psy12242 365 IGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVG 444 (498)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~ 444 (498)
.+-.+.++....+.+...... ...+.++.+.+..+.......|...+.+.|++|+++...++++.+...++...+||
T Consensus 80 ~~~~~~~~~~~~L~~l~~~~~---~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGP 156 (524)
T PF05977_consen 80 LSQLLRALVALLLAVLAFFGL---LSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGP 156 (524)
T ss_pred HHHHHHHHHHHHHHHHHHhCc---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccc
Confidence 998888777666665443322 22233333344444444445688889999999999999999999999999999999
Q ss_pred HhHHHHHHhhhh-HHHHHHHHHHHHH
Q psy12242 445 LGFLPIESIIHG-YVFTIFAVLQAMF 469 (498)
Q Consensus 445 ~~~~~l~~~~g~-~~~~~~~~~~~~~ 469 (498)
.++|.+....|. ..+.+-++..++.
T Consensus 157 algG~Lva~~G~~~~f~inalsfl~~ 182 (524)
T PF05977_consen 157 ALGGILVAFFGAAAAFLINALSFLIS 182 (524)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998886 4454444444433
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.8e-10 Score=110.63 Aligned_cols=148 Identities=14% Similarity=0.023 Sum_probs=102.9
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhc
Q psy12242 327 LSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAV 406 (498)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (498)
.+..+.++..+...++..++.++.|+++||+|||+.+..+..+..++.++....... .....++....+.+....
T Consensus 68 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~r~l~G~~~~ 142 (481)
T TIGR00879 68 YSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFA-----LSVEMLIVGRVLLGIGVG 142 (481)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccc-----cchHHHHHHHHHHHhhhh
Confidence 337889999999999999999999999999999999988888877776666443211 111122223333333333
Q ss_pred CccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhH---HHHHHhhhhH-HHHHHHHHHHHHHHHHHHhccCC
Q psy12242 407 GPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGF---LPIESIIHGY-VFTIFAVLQAMFVLFIYKKVPET 480 (498)
Q Consensus 407 ~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~---~~l~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~ 480 (498)
...+....++.|.+|+++|+++.++.+....+|..+++.+. +...+..++. .+.+ .++..+..++...+.+|+
T Consensus 143 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~-~~~~~~~~~~~~~~l~~~ 219 (481)
T TIGR00879 143 IASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGL-QLIPAGLLFLGLFFLPES 219 (481)
T ss_pred HHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHH-HHHHHHHHHHHHhcCCCC
Confidence 44566778889999999999999999999999999999988 4444445553 4444 333333333444455654
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.3e-10 Score=108.59 Aligned_cols=143 Identities=13% Similarity=0.140 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhccchhhHHHHHHHHHHHHHHhhhh-ccchhHHHHHHHHHHHhhhhhhhcchhhhh
Q psy12242 90 AVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSK-AFSSYEMIILGRFLIGINSGLNAGLAPMYL 168 (498)
Q Consensus 90 g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i 168 (498)
..+.....+...++.++.|+++||+|||+.+..+.++..++.+...... ..++.+.+++..++.|++.+...+...+++
T Consensus 289 ~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 368 (438)
T PRK09952 289 LNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMF 368 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666778889999999999999999888776655544333211 013344555566777888888888889999
Q ss_pred hccCcccchhhhHhHHH-HHHHHHHHHHHHHhcCcccCC--CCchhHHHHhhhHHHHHHHhhcccccCC
Q psy12242 169 AEISPVHLRGAVGTVYQ-LVITISIVISQILGLGGLLGT--ADGWPLLLAFTLVPGIYQMITLPFCPES 234 (498)
Q Consensus 169 ~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~i~~~~~~~~--~~~wr~~f~~~~~~~~~~~~~~~~~~e~ 234 (498)
.|.+|++.|+...++.. .+..+|..++|.+. +.+.+ ..+|+..+...++..++..+..+.++|+
T Consensus 369 ~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~--g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~ 435 (438)
T PRK09952 369 TEMFGASYRYSGAGVGYQVASVVGGGFTPFIA--AALVTYFGGSWHSVAIYLLAGCLISAMTALLMKDN 435 (438)
T ss_pred HHHCCcchhHHHHhHHHHHHHHHHHHHHHHHH--HHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcccc
Confidence 99999999998888854 44557888888843 34433 2358888887777777666655556664
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.4e-09 Score=102.20 Aligned_cols=135 Identities=10% Similarity=-0.018 Sum_probs=101.7
Q ss_pred HHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHH
Q psy12242 312 NAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSI 391 (498)
Q Consensus 312 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (498)
.......|.+.+++|.+..+.++..+...++..++++..+++.||+|||+.+..+..+.+++...+...... .++
T Consensus 20 ~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~-----~~~ 94 (410)
T TIGR00885 20 DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEI-----MNY 94 (410)
T ss_pred HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhh-----ccH
Confidence 344566678888999999999999999999999999999999999999999999998888887665432211 122
Q ss_pred HHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy12242 392 FCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIE 451 (498)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~ 451 (498)
.......+..+.......+....+..+..|++.+++..++.+....+|..++|.+.+.+.
T Consensus 95 ~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~ 154 (410)
T TIGR00885 95 TLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI 154 (410)
T ss_pred HHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222223232222233444556778889899999999999999999999999988775
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.8e-09 Score=102.34 Aligned_cols=141 Identities=11% Similarity=0.025 Sum_probs=93.8
Q ss_pred chHHHHHhHHHHHhhcC---CCchh---HHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHH
Q psy12242 310 GINAVIYFSTKIFTMAQ---LSDTA---AQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQF 383 (498)
Q Consensus 310 ~~~~~~~~~~~~~~~~g---~~~~~---~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (498)
-...+.+..|.+.++++ .+..+ .+.......++..+|+++.|+++||+|||+.+..+..+..++.+...+....
T Consensus 37 d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~ 116 (432)
T PRK10406 37 DFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGY 116 (432)
T ss_pred HHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 34456666777777764 34443 2334444556666999999999999999999999998888888776654321
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHH
Q psy12242 384 VEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPI 450 (498)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l 450 (498)
..........+...-+..+....+..+...+++.|.+|+++|++..++.......|..+++.+...+
T Consensus 117 ~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~ 183 (432)
T PRK10406 117 ETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVL 183 (432)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1100111222333334444444455678888999999999999999988777777777776655444
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.6e-09 Score=98.32 Aligned_cols=149 Identities=10% Similarity=0.043 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHhhchHHHHHhHHHHHhhcCCCchh-HHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHH
Q psy12242 296 LFISMTVMVAQQLSGINAVIYFSTKIFTMAQLSDTA-AQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVT 374 (498)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~ 374 (498)
.++.|...++..+ =....+..|++.+++|++..+ .+.+...+..+..+..+.+|++.||+|.|+++..+.+...+..
T Consensus 29 ~~~lC~fGF~~e~--R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t 106 (511)
T TIGR00806 29 VLYLCFYGFMAQF--RPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVW 106 (511)
T ss_pred HHHHHHHHHHHHh--hchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 3434444444333 234566678888899999999 9999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q psy12242 375 VLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESII 454 (498)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~ 454 (498)
++.++. .....+.++-++.+.+..... ....++...+|+++|+++.|+.+....+|.++++.+.+. ....
T Consensus 107 ~L~~fa--------~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~ 176 (511)
T TIGR00806 107 LLLLLG--------TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTL 176 (511)
T ss_pred HHHHHH--------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhc
Confidence 887763 223333333344444444443 667788899999999999999999999999999999999 5556
Q ss_pred hh
Q psy12242 455 HG 456 (498)
Q Consensus 455 g~ 456 (498)
+|
T Consensus 177 gW 178 (511)
T TIGR00806 177 GW 178 (511)
T ss_pred Cc
Confidence 65
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.8e-09 Score=102.55 Aligned_cols=136 Identities=10% Similarity=-0.099 Sum_probs=106.6
Q ss_pred HHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHH
Q psy12242 312 NAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSI 391 (498)
Q Consensus 312 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (498)
.......|.+.+++|.|..+.++..+...++..++.+..|++.||+|||+++..+..+.+++.+...+... +
T Consensus 26 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~--------~ 97 (393)
T PRK09705 26 TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQ--------S 97 (393)
T ss_pred hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcc--------h
Confidence 34456677888999999999999999999999999999999999999999999999999999888876422 2
Q ss_pred HHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhh-hh
Q psy12242 392 FCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESII-HG 456 (498)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~-g~ 456 (498)
..+...-++.+.......+....+..+.+| ++|++++|+.......|..+++.+.+.+.+.. +|
T Consensus 98 ~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w 162 (393)
T PRK09705 98 ALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETW 162 (393)
T ss_pred HHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 222333333333333334555567778887 77999999999999999999999999888765 44
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.4e-09 Score=102.25 Aligned_cols=163 Identities=12% Similarity=0.041 Sum_probs=98.6
Q ss_pred HHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q psy12242 315 IYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCI 394 (498)
Q Consensus 315 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (498)
.+.++++.+++|.++.+.+.......+...++.+..|+++||+|||+.+..+....++......................
T Consensus 23 ~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (396)
T TIGR00882 23 PFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGA 102 (396)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 34444455678999999999999999999999999999999999999998766655544333221111000000111111
Q ss_pred HHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q psy12242 395 ILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIHGYVFTIFAVLQAMFVLFIY 474 (498)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~ 474 (498)
....+..+.......+....+..|..+ .++...|.......+|..++|.+.+.+.+......+++.+.+.++..++.+
T Consensus 103 ~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~ 180 (396)
T TIGR00882 103 IVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILFSIDPQIVFWLGSGFALILMLLLM 180 (396)
T ss_pred HHHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHH
Confidence 211222222222334444555545422 234566777788889999999998887664223566666666665554444
Q ss_pred HhccC
Q psy12242 475 KKVPE 479 (498)
Q Consensus 475 ~~~~~ 479 (498)
...++
T Consensus 181 ~~~~~ 185 (396)
T TIGR00882 181 FAKPK 185 (396)
T ss_pred HhCCC
Confidence 43343
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.8e-09 Score=104.32 Aligned_cols=149 Identities=13% Similarity=0.216 Sum_probs=111.1
Q ss_pred cchhhHHHHHHHHH-HHHHHHHHHHHHhHHHHHHhhccchhhHHHHHHHHHHHHHHhh-hhccchhHHHHHHHHHHHhhh
Q psy12242 80 IEQSQVTMIFAVAV-SIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGF-SKAFSSYEMIILGRFLIGINS 157 (498)
Q Consensus 80 ~~~~~~~~~~g~~~-s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~r~l~G~~~ 157 (498)
.+..+. ++.. +...++..++.+++|+++||+|+|+.+.++.++.+++.+.... +...++.+.+.+.-++..+..
T Consensus 255 ~s~~~~----g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~ 330 (491)
T PRK11010 255 FDAGEV----GLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCG 330 (491)
T ss_pred CCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 677777 8887 4666899999999999999999999887766665555443321 110135555555666666666
Q ss_pred hhhhcchhhhhhccCcccchhhhHhHHHHHHHHHHHHHHHHhcCcccCCCCchhHHHHhhhHHHHHHHhhcccccCC
Q psy12242 158 GLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLLGTADGWPLLLAFTLVPGIYQMITLPFCPES 234 (498)
Q Consensus 158 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~ 234 (498)
|...+...++..+..+++.+++..++.+...++|..++++ ..+.+.+..||+..|.+.++.+++.++...+++++
T Consensus 331 g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~--~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~~ 405 (491)
T PRK11010 331 GMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGP--VAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQT 405 (491)
T ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6666667888899999999999999999999999888777 44577777899999999888888777666555544
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=9.9e-10 Score=105.36 Aligned_cols=136 Identities=18% Similarity=0.118 Sum_probs=111.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhh
Q psy12242 80 IEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGL 159 (498)
Q Consensus 80 ~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 159 (498)
.++.+. |.+.+...++..+..++.|++.||+|+|+.+..+.++.+++.++.+.. ++.+.+++..++.|++.+.
T Consensus 237 ~s~~~~----g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~g~~~~~ 309 (382)
T PRK11128 237 YSASTI----GYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGST---TALPWLIVIQILHCGTFTV 309 (382)
T ss_pred CCHhHH----HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHH
Confidence 566666 888888889999999999999999999999999999998888888777 8899999999999999999
Q ss_pred hhcchhhhhhccCcccchhhhHhHHH-HHHHHHHHHHHHHhcCcccCCCCchhHHHHhhhHHHHHHHh
Q psy12242 160 NAGLAPMYLAEISPVHLRGAVGTVYQ-LVITISIVISQILGLGGLLGTADGWPLLLAFTLVPGIYQMI 226 (498)
Q Consensus 160 ~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~ 226 (498)
..+....++.+. +++++++..+... ...++|..+||. +++.+.+..++ ..|+..+.+.++.++
T Consensus 310 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~--i~G~l~~~~g~-~~~~~~~~~~~~~~~ 373 (382)
T PRK11128 310 CHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTV--LSGFLYQHLGA-GVFWVMALVALPALF 373 (382)
T ss_pred HHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhccH-HHHHHHHHHHHHHHH
Confidence 999999998887 5567788888876 556778888888 55677777787 466655555554443
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.09 E-value=5e-10 Score=90.60 Aligned_cols=135 Identities=17% Similarity=0.170 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhh
Q psy12242 337 LGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLV 416 (498)
Q Consensus 337 ~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (498)
....++.+++.+..+++.||++||+.+..+.....+..+.+.... ............+.......+....+.
T Consensus 5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~g~~~~~~~~~~~~~~ 76 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSS--------NITVLIIARFLQGFGAAFALVAGAALI 76 (141)
T ss_pred EeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhc--------cHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 345677888999999999999999998887777776665554321 111122222223333333446677788
Q ss_pred cccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHhccC
Q psy12242 417 SELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIHG-YVFTIFAVLQAMFVLFIYKKVPE 479 (498)
Q Consensus 417 ~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~ 479 (498)
.|..|++.|++..++.+....++..+++.+.+.+.+..++ ..+.+.+.+.++..+..+...||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 77 ADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred HHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 8999999999999999999999999999999999887776 45666666666665555554444
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.1e-08 Score=100.78 Aligned_cols=165 Identities=12% Similarity=0.006 Sum_probs=106.2
Q ss_pred hHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhH
Q psy12242 311 INAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMS 390 (498)
Q Consensus 311 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (498)
.+.+..+.+.+.+++|++..+.+........ ...+.++.|++.||+|+|+++.++.++..++.++.++...... ..+
T Consensus 43 ~y~fsv~s~~L~~~lgls~~~l~~i~svg~~-~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i--~~s 119 (591)
T PTZ00207 43 MYAFNLISGAMQARYNLTQRDLSTITTVGIA-VGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVI--EGS 119 (591)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccc--cCc
Confidence 3455677788889999999998887765333 3345667899999999999999999999998887776421100 012
Q ss_pred HHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHH
Q psy12242 391 IFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIHGYVFTIFAVLQAMFV 470 (498)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~ 470 (498)
...+.+...+.+.......+.....+.+.+| +.||++.|+......+|+++.+.+...+........+++.+++.++..
T Consensus 120 ~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ 198 (591)
T PTZ00207 120 VVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVG 198 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 2222222223333332233444556677787 679999999999999999875555554443222245555566666655
Q ss_pred HHHHHhccC
Q psy12242 471 LFIYKKVPE 479 (498)
Q Consensus 471 ~~~~~~~~~ 479 (498)
++.+.+.+.
T Consensus 199 ll~~~~vr~ 207 (591)
T PTZ00207 199 ILAIVFMRL 207 (591)
T ss_pred HHHHhheeC
Confidence 555554443
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.08 E-value=9.1e-10 Score=106.82 Aligned_cols=166 Identities=22% Similarity=0.226 Sum_probs=131.6
Q ss_pred ccccccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccc--hh
Q psy12242 42 FQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRK--GG 119 (498)
Q Consensus 42 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr--~~ 119 (498)
+.++++.. +.....+..++++ .+..+. ..+.-+..+..++|++++|++.||+|.| ++
T Consensus 293 ~~dg~~ti-~~~~~i~a~~~lg----------------~s~~~l----~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~ 351 (477)
T PF11700_consen 293 YSDGVNTI-ISFAGIYATEVLG----------------MSTTQL----IVFGLVVQIVAIIGALLFGWLQDRFGPKTKRT 351 (477)
T ss_pred HHHHHHHH-HHHHHHHHHHhcC----------------cCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHH
Confidence 44554443 2334455566666 777776 6777777888899999999999999999 89
Q ss_pred hHHHHHHHHHHHHHHhh--------hhccchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHHHHHHHH
Q psy12242 120 LLINNVFVVLAALLQGF--------SKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITIS 191 (498)
Q Consensus 120 l~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g 191 (498)
+.++++++.+..+...+ . ++-+.+.+.-++.|+..|..++...++.+|..|+++.+..+|++....-..
T Consensus 352 l~~~l~~~~~i~~~g~~G~~~~~~g~---~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~s 428 (477)
T PF11700_consen 352 LLISLILWIIIPLYGLFGFWPSFFGL---KSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKAS 428 (477)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccCc---ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH
Confidence 99888888666665554 4 778889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcccCCC-CchhHHHHhhhHHHHHHHhhcccccC
Q psy12242 192 IVISQILGLGGLLGTA-DGWPLLLAFTLVPGIYQMITLPFCPE 233 (498)
Q Consensus 192 ~~~~~~i~~~~~~~~~-~~wr~~f~~~~~~~~~~~~~~~~~~e 233 (498)
..+||++ .+.+.+. .+-|+.+....++.++.+++.+++++
T Consensus 429 s~lGPll--~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~~ 469 (477)
T PF11700_consen 429 SWLGPLL--FGLITDATGSQRYGFLFLLVLFLIGLILLFFVDV 469 (477)
T ss_pred HHHHHHH--HHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccc
Confidence 9999995 2344333 34788888888877777777766654
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.9e-09 Score=92.19 Aligned_cols=161 Identities=20% Similarity=0.173 Sum_probs=123.1
Q ss_pred cCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhhHHHHHHHHHH
Q psy12242 51 FNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLA 130 (498)
Q Consensus 51 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~ 130 (498)
++.-.|.+++.++ .+++|. ..+.+.-.+|..+| ++.|.+.|++|+|.++.+|.+...+|
T Consensus 21 Fs~yS~~Lk~~l~----------------~sq~~l----~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~G 79 (250)
T PF06813_consen 21 FSAYSPQLKSRLG----------------YSQSQL----NTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVG 79 (250)
T ss_pred hhhhhHHHHHHhC----------------CCHHHH----HHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 3445588888888 899998 88889999998875 88999999999999999999999999
Q ss_pred HHHHhhhhc----cchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHHHHHHHHHHHHHHHhcCcccCC
Q psy12242 131 ALLQGFSKA----FSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLLGT 206 (498)
Q Consensus 131 ~~~~~~~~~----~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~ 206 (498)
..+...+.. ..++|.+.+..++.|.+.+...+.+.....+.|| ++||++.++.-...+++..+-..+.. ...+
T Consensus 80 Y~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~--~~f~ 156 (250)
T PF06813_consen 80 YGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYS--AFFG 156 (250)
T ss_pred HHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHH--HHcC
Confidence 988776532 1467888888889989888777888888889998 68999999999999999988776532 2222
Q ss_pred CCchhHHHHhhhHHHHHHHhhcccccCCh
Q psy12242 207 ADGWPLLLAFTLVPGIYQMITLPFCPESP 235 (498)
Q Consensus 207 ~~~wr~~f~~~~~~~~~~~~~~~~~~e~p 235 (498)
...-+..+.....+.++.++...++++.|
T Consensus 157 ~~~~~fll~la~~~~~v~l~~~~~vr~~~ 185 (250)
T PF06813_consen 157 DDPSSFLLFLAVLPAVVCLVAMFFVRPVP 185 (250)
T ss_pred CChHHHHHHHHHHHHHHHHHHhhheeccC
Confidence 33344555555555555555555555443
|
|
| >KOG2615|consensus | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.3e-09 Score=97.74 Aligned_cols=147 Identities=21% Similarity=0.172 Sum_probs=107.1
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHh
Q psy12242 326 QLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFA 405 (498)
Q Consensus 326 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (498)
+-+...+|++-+.+.+...+.++..|.++||+|||.++..+.+..++...+.+.. .....++..=+..+. .
T Consensus 64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S--------~~F~afv~aR~l~Gi-~ 134 (451)
T KOG2615|consen 64 GASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALS--------RNFAAFVLARFLGGI-F 134 (451)
T ss_pred cccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhhhh-c
Confidence 3355677888899999999999999999999999999999998888877666653 333222222333333 3
Q ss_pred cCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHH---hhhhHHHHH-HH---HHHHHHHHHHHHhcc
Q psy12242 406 VGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIES---IIHGYVFTI-FA---VLQAMFVLFIYKKVP 478 (498)
Q Consensus 406 ~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~---~~g~~~~~~-~~---~~~~~~~~~~~~~~~ 478 (498)
-+...+..++++|++++++|+.+++..+....+|-++||.++|++.. ..+.+++.. .. +..+.......++.|
T Consensus 135 kgnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lp 214 (451)
T KOG2615|consen 135 KGNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLP 214 (451)
T ss_pred cCchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCC
Confidence 44557888999999999999999999999999999999999999987 444333322 11 122222334555678
Q ss_pred CCC
Q psy12242 479 ETK 481 (498)
Q Consensus 479 ~~~ 481 (498)
||-
T Consensus 215 ETL 217 (451)
T KOG2615|consen 215 ETL 217 (451)
T ss_pred ccc
Confidence 874
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.6e-09 Score=108.09 Aligned_cols=156 Identities=13% Similarity=-0.031 Sum_probs=118.0
Q ss_pred HHHHHHHHHHhhchHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHH
Q psy12242 298 ISMTVMVAQQLSGINAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLL 377 (498)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~ 377 (498)
+.+......+...........+.+.++++++..+.|++.+...++..++.++.+++.||.+||+.+.++.++++++.++.
T Consensus 36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~ 115 (633)
T TIGR00805 36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLL 115 (633)
T ss_pred HHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHH
Confidence 33333444443334455556677778899999999999999999999999999999999999999999999999998887
Q ss_pred HHHHHHhhh-----------------------------------------h--hhHHHHHHHHHHHHHHHhcCccchhhh
Q psy12242 378 TIVMQFVEI-----------------------------------------F--VMSIFCIILVIMFVVFFAVGPGSIPWF 414 (498)
Q Consensus 378 ~~~~~~~~~-----------------------------------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (498)
.+....... . ...+..+++.-++.+.......++..+
T Consensus 116 alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~ 195 (633)
T TIGR00805 116 SLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGIS 195 (633)
T ss_pred hChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCch
Confidence 654211000 0 002333344455555555666678889
Q ss_pred hhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q psy12242 415 LVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESI 453 (498)
Q Consensus 415 ~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~ 453 (498)
++.|.+|++.|+...|+.+....+|..+++.+.+.+.+.
T Consensus 196 ~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~ 234 (633)
T TIGR00805 196 YIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQI 234 (633)
T ss_pred hhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999988754
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=7e-09 Score=101.28 Aligned_cols=150 Identities=13% Similarity=0.001 Sum_probs=97.1
Q ss_pred HHHHHHHhhchHHHHHhHHHHHhhcCCCchhHHHH-HHHH-----HHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHH
Q psy12242 301 TVMVAQQLSGINAVIYFSTKIFTMAQLSDTAAQWA-TLGM-----GTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVT 374 (498)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~-----~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~ 374 (498)
....+....-...+....|.+.++++.++.+.+.. .+.. .+...++.++.|++.||+|||+.+..+..+..++.
T Consensus 21 ~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ 100 (434)
T PRK15075 21 TSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSIMASGT 100 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHHHHHHH
Confidence 33333333445567788888888888877664332 2211 22234678899999999999999999998888887
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHH
Q psy12242 375 VLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPI 450 (498)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l 450 (498)
+...+..............++..-++.+.......+....++.|.+|+++|+++.++.....+++..+++.+.+.+
T Consensus 101 ~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l 176 (434)
T PRK15075 101 LLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLL 176 (434)
T ss_pred HHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776643211100000011122223333333333455667899999999999999999988888888777776665
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.8e-08 Score=98.08 Aligned_cols=136 Identities=11% Similarity=-0.007 Sum_probs=100.0
Q ss_pred hHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhH
Q psy12242 311 INAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMS 390 (498)
Q Consensus 311 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (498)
........|.+.+++|.++.+.++..+...++..++.+..|++.||+|||+.+..+..+.+++.+++..... ..+
T Consensus 42 ~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~-----a~~ 116 (438)
T PRK10133 42 NNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE-----IMN 116 (438)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHh-----cCC
Confidence 355666778888899999999999999999999999999999999999999999999888888766532111 112
Q ss_pred HHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy12242 391 IFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIE 451 (498)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~ 451 (498)
+..+....+..+.......+....++.|..|++.+...+++.+....+|..+++.+.+.+.
T Consensus 117 ~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 117 YTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222333333333334555556667766666666899999999999999998877654
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.04 E-value=6e-09 Score=99.03 Aligned_cols=162 Identities=13% Similarity=0.066 Sum_probs=106.5
Q ss_pred HHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhcc-----CCceeh-hhhhHHHHHHHHHHHHHHHHhhh
Q psy12242 313 AVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEIS-----GRKTLL-LIGFMGVFVVTVLLTIVMQFVEI 386 (498)
Q Consensus 313 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 386 (498)
......|.+.++.|+|..+.++.... .+...+ .++.|++.||+ |||+.+ ..+.+..++....+.+...
T Consensus 6 ~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~---- 79 (356)
T TIGR00901 6 LVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP---- 79 (356)
T ss_pred hHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc----
Confidence 45556788888999999999988654 333343 88999999997 788874 4555555555444443211
Q ss_pred hhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhh--------hH-
Q psy12242 387 FVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIH--------GY- 457 (498)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g--------~~- 457 (498)
......+....+..........+...+++.|.+|+++|+.+.++......+|..+++.+.+.+.+..+ |.
T Consensus 80 -~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~ 158 (356)
T TIGR00901 80 -STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGY 158 (356)
T ss_pred -chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHH
Confidence 11112222222223333333456677788999999999999999999999999999999999888777 53
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCC
Q psy12242 458 VFTIFAVLQAMFVLFIYKKVPETK 481 (498)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~ 481 (498)
.+.+.+++.++..+..++..+|++
T Consensus 159 ~f~i~ai~~l~~~~~~~~~~~e~~ 182 (356)
T TIGR00901 159 IFFWTALLILPGLLVTLFLAKEPQ 182 (356)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCC
Confidence 444444444444433333456543
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.6e-09 Score=105.69 Aligned_cols=152 Identities=18% Similarity=0.118 Sum_probs=110.8
Q ss_pred hHHHHHhhcCCC---chhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHH
Q psy12242 317 FSTKIFTMAQLS---DTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFC 393 (498)
Q Consensus 317 ~~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (498)
+.+.+.++.+++ ..+.++..+...++.+++.++.|+++||+|||+.+..+.++..++.+...+. ..+..
T Consensus 111 ~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~--------~~~~~ 182 (505)
T TIGR00898 111 FSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFS--------PNYTV 182 (505)
T ss_pred ccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHc--------ccHHH
Confidence 345566777888 7888999999999999999999999999999999988888777776665542 22333
Q ss_pred HHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh-HHHHHHHHHHHHHHHH
Q psy12242 394 IILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIHG-YVFTIFAVLQAMFVLF 472 (498)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~-~~~~~~~~~~~~~~~~ 472 (498)
+....++.++...+..+....++.|.+|+++|+.+.++......+|..+++.+...+.+ | +.+.+.++..++..+.
T Consensus 183 ~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~~~~ 259 (505)
T TIGR00898 183 FLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFLL 259 (505)
T ss_pred HHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHH
Confidence 33444445555555567888899999999999999999988888888888877665544 3 3344444444444433
Q ss_pred HHHhccCC
Q psy12242 473 IYKKVPET 480 (498)
Q Consensus 473 ~~~~~~~~ 480 (498)
. ++.+|+
T Consensus 260 ~-~~~~es 266 (505)
T TIGR00898 260 S-WFVPES 266 (505)
T ss_pred H-HhcCCC
Confidence 3 556664
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.2e-08 Score=98.62 Aligned_cols=165 Identities=13% Similarity=0.082 Sum_probs=113.1
Q ss_pred hchHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhcc-----CCce-ehhhhhHHHHHHHHHHHHHHH
Q psy12242 309 SGINAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEIS-----GRKT-LLLIGFMGVFVVTVLLTIVMQ 382 (498)
Q Consensus 309 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----g~~~-~~~~~~~~~~~~~~~~~~~~~ 382 (498)
..........|.++++.|++.++.|++...... .+..++.|+++||+ |||+ .+..+..+.+++...+.+...
T Consensus 13 ~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~ 90 (402)
T PRK11902 13 LPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPP 90 (402)
T ss_pred hhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCc
Confidence 345566777788888899999999988665554 58889999999999 7776 566666666666665544311
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhh-hhH-HHH
Q psy12242 383 FVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESII-HGY-VFT 460 (498)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~-g~~-~~~ 460 (498)
......+..+.+....+.....+...+++.|..|+++|+++.++......++..+++.+.+.+.+.. +|. .++
T Consensus 91 -----~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~ 165 (402)
T PRK11902 91 -----HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYL 165 (402)
T ss_pred -----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHH
Confidence 1112222222222334444455777889999999999999999999988999999999999888853 663 455
Q ss_pred HHHHHHHHHHHHHHHhccCCC
Q psy12242 461 IFAVLQAMFVLFIYKKVPETK 481 (498)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~ 481 (498)
+.+++.++..+ .....+|++
T Consensus 166 i~a~~~l~~~l-~~~~~~e~~ 185 (402)
T PRK11902 166 LMAGLMLAGAL-TTLWAPEPE 185 (402)
T ss_pred HHHHHHHHHHH-HHHhcCCCc
Confidence 55555444333 334456553
|
|
| >KOG3764|consensus | Back alignment and domain information |
|---|
Probab=99.01 E-value=8.8e-10 Score=99.43 Aligned_cols=151 Identities=10% Similarity=0.034 Sum_probs=126.1
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q psy12242 325 AQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFF 404 (498)
Q Consensus 325 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (498)
.+-+..+.|+++....+.+++.+++.|.+.||+|+|..++++..++..+.+++++. ..+..+++.=...+..
T Consensus 101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg--------~sy~~l~vAR~LQgvg 172 (464)
T KOG3764|consen 101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFG--------NSYPMLFVARSLQGVG 172 (464)
T ss_pred ccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHc--------chhHHHHHHHHHhhhh
Confidence 35566789999999999999999999999999999999999999999999998884 4445555556666666
Q ss_pred hcCccchhhhhhcccCCCCh-hhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHhccCCCC
Q psy12242 405 AVGPGSIPWFLVSELFSQSA-RPLATSLAVSINWTANFIVGLGFLPIESIIHG-YVFTIFAVLQAMFVLFIYKKVPETKN 482 (498)
Q Consensus 405 ~~~~~~~~~~~~~~~~p~~~-~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (498)
+........++.++.+|++. |++++|+.-.+..+|..++|.++|.+++..|. .+|.+++.++++-..+.++..+.++.
T Consensus 173 sA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~ 252 (464)
T KOG3764|consen 173 SAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEM 252 (464)
T ss_pred HHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCcccc
Confidence 66666777789999999876 69999999999999999999999999999995 68888888888887777666554443
Q ss_pred C
Q psy12242 483 K 483 (498)
Q Consensus 483 ~ 483 (498)
+
T Consensus 253 ~ 253 (464)
T KOG3764|consen 253 D 253 (464)
T ss_pred C
Confidence 3
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.1e-08 Score=96.75 Aligned_cols=186 Identities=13% Similarity=0.023 Sum_probs=118.4
Q ss_pred hHHHHHHHHHHHHhhchHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhh----ccCCceehhhh-hHH
Q psy12242 295 PLFISMTVMVAQQLSGINAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVE----ISGRKTLLLIG-FMG 369 (498)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~g~~~~~~~~-~~~ 369 (498)
+++......+..++.. .....+.+.+.+..|.+....+.+.....+.+++..++.|+++| |+|||+..+.. ...
T Consensus 5 ~li~~~~~~~Giq~~~-~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~ 83 (477)
T TIGR01301 5 KLLRVASVAAGVQFGW-ALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAAL 83 (477)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHH
Confidence 3455555555666553 34455555577889999999999999999999999999999999 59999998764 444
Q ss_pred HHHHHHHHHHHHHHhh--------hh-hhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChh--hHHHHHHHHHHHH
Q psy12242 370 VFVVTVLLTIVMQFVE--------IF-VMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSAR--PLATSLAVSINWT 438 (498)
Q Consensus 370 ~~~~~~~~~~~~~~~~--------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~g~~~~~~~~ 438 (498)
..+++.++.+...... .. .......+....+.-+......+...+++.|..|+++| +.+.+..+....+
T Consensus 84 ~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~l 163 (477)
T TIGR01301 84 VAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAI 163 (477)
T ss_pred HHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHH
Confidence 4444455444322100 00 00111111111111222222334557789999998865 5789999999999
Q ss_pred HHHHHHHhHHHH--HHhh-------------h-hHHHHHHHHHHHHHHHHHHHhccCCC
Q psy12242 439 ANFIVGLGFLPI--ESII-------------H-GYVFTIFAVLQAMFVLFIYKKVPETK 481 (498)
Q Consensus 439 ~~~~~~~~~~~l--~~~~-------------g-~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (498)
|+.+++.+.+.. .+.. + ...|.+.+++.+++.++..+..+|..
T Consensus 164 G~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 164 GNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred HHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 999999888764 2211 1 13556666666666666666677754
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.00 E-value=4e-09 Score=97.43 Aligned_cols=129 Identities=14% Similarity=0.117 Sum_probs=101.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhh
Q psy12242 80 IEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGL 159 (498)
Q Consensus 80 ~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 159 (498)
.++.+. ++..+.+..+..++.+..+++.||+|+||.+.++..+.+++.++.... ++... ...-++.|++.+.
T Consensus 175 ~s~~~a----~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~---~~~~~-~~~~~l~g~~~s~ 246 (310)
T TIGR01272 175 LPEDQA----AHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALT---HGYVA-MWFVLALGLFNSI 246 (310)
T ss_pred CCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc---CCHHH-HHHHHHHHHHHHH
Confidence 566666 999999999999999999999999999999988888888877666655 43332 3456689999999
Q ss_pred hhcchhhhhhccCcccchhhhHhHHHHHHHHHHHHHHHHhcCcccCCCCchhHHHHhhhHH
Q psy12242 160 NAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLLGTADGWPLLLAFTLVP 220 (498)
Q Consensus 160 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~wr~~f~~~~~~ 220 (498)
.+|...+...+..|+ +.+++.++. ....+|..+.|+ +.+.+.+..+.+..|++..+.
T Consensus 247 i~P~~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~--l~G~lad~~g~~~a~~v~~~~ 303 (310)
T TIGR01272 247 MFPTIFSLALNALGR-HTSQGSGIL-CLAIVGGAIVPL--LQGSLADCLGIQLAFALPVPC 303 (310)
T ss_pred HHHHHHHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHH--HHHHHHHhccchHHHHHHHHH
Confidence 999999999998885 445666665 556688899988 345777777888888754433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.7e-07 Score=85.94 Aligned_cols=336 Identities=11% Similarity=-0.030 Sum_probs=172.4
Q ss_pred HHHHHHHHHhHHHHHHhhccchhhHHHHHHHHHH----HHHHhhhhccc-----hhHH---HHHHHHHHHh-hhhhhhcc
Q psy12242 97 CAGGIIGGAATGYVAERFGRKGGLLINNVFVVLA----ALLQGFSKAFS-----SYEM---IILGRFLIGI-NSGLNAGL 163 (498)
Q Consensus 97 ~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~----~~~~~~~~~~~-----~~~~---~~~~r~l~G~-~~g~~~~~ 163 (498)
.+..++.++..|.+.||..|.+++-.+.+..-++ +.+....-..+ +-+. +++.-.+.|. ..=.....
T Consensus 48 ~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~ 127 (432)
T PF06963_consen 48 SLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIAN 127 (432)
T ss_pred HHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3455677888999999999999877776553333 22222110001 1112 2222222222 11112222
Q ss_pred hhhhhhccC------cccchhhhHhHHHHHHHHHHHHHHHHhcCcccCCCCchhHHHHhhhHHHHHHHhhc-cc----cc
Q psy12242 164 APMYLAEIS------PVHLRGAVGTVYQLVITISIVISQILGLGGLLGTADGWPLLLAFTLVPGIYQMITL-PF----CP 232 (498)
Q Consensus 164 ~~~~i~~~~------~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~----~~ 232 (498)
..+.=.||. +++.+.+.++...-.--+-.+++|+ ..+.+....+.+....+.+...++.+..= ++ ..
T Consensus 128 ~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl--~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~ 205 (432)
T PF06963_consen 128 TIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPL--FVGLLMTFASPVIAAIFIAGWNLASVFVEYFLLARVYN 205 (432)
T ss_pred hheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHH--HHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233334553 3455667777777777788899998 44566666777777766665555544321 11 12
Q ss_pred CChhhHHHhcCCHHHHHHHHHhhcCCchhHHHHHHHHHhHHhhhcCCCchhhhHhccccchhhHHHHHHHHHHHHhhchH
Q psy12242 233 ESPKYILLSKGQELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGIN 312 (498)
Q Consensus 233 e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (498)
..|.- .++++.++.++..+.. .. ..........+...+.-......++..++++.+... +......++...
T Consensus 206 ~~P~L--~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vflas-----~alalLY~TVLs 276 (432)
T PF06963_consen 206 SVPAL--AVKKRSSESESSSDEE-SS-SESSSDPSILKRLWNPLRTIIRGWRTYFRQPVFLAS-----FALALLYFTVLS 276 (432)
T ss_pred hChHh--cCCCCCcccccccccc-cc-ccccchhhHHHHHHHHHHHHhccHHHHHhCHHHHHH-----HHHHHHHHHHhc
Confidence 33321 1111111110000000 00 000000000011111111123456666666633322 222221221111
Q ss_pred HHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhh--hhH
Q psy12242 313 AVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIF--VMS 390 (498)
Q Consensus 313 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 390 (498)
+......+....|+++...+.+-....+.++.|.+...++.+|+|..+.-..+.....++..........+..+ ...
T Consensus 277 -f~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s 355 (432)
T PF06963_consen 277 -FGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSIS 355 (432)
T ss_pred -CcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhH
Confidence 22233334455599999999999999999999999999999999988887777766655554444333333221 112
Q ss_pred HHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHH
Q psy12242 391 IFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVG 444 (498)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~ 444 (498)
...++......=.+--++.-...-++.|..|+++||+..|+-+..+++...+.-
T Consensus 356 ~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~ 409 (432)
T PF06963_consen 356 AYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSF 409 (432)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHH
Confidence 222221111111222223334555778999999999999999888877655443
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.2e-09 Score=97.16 Aligned_cols=179 Identities=17% Similarity=0.146 Sum_probs=141.4
Q ss_pred HHHHHHHhhhhhccccccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy12242 30 AFAISASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATGY 109 (498)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~ 109 (498)
-...++++-. .+.+|.+... ...-.+-+++++ ++..+. .++.-...+..+++++++|+
T Consensus 253 ~i~~FLiA~~-~~~DGv~til-~~~~~fg~~~~g----------------ls~~~l----ll~g~~~~vvA~lg~ii~g~ 310 (438)
T COG2270 253 NLVLFLIARF-FYIDGVNTIL-AMGGVFGAADLG----------------LSSTEL----LLIGIALSVVAALGAIIAGF 310 (438)
T ss_pred chHHHHHHHH-HHHhhHHHHH-HHHHHHHHHHcC----------------ccHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 3445555555 5777766653 222334445666 788887 77778888889999999999
Q ss_pred HHHhhccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHHHHHH
Q psy12242 110 VAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVIT 189 (498)
Q Consensus 110 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 189 (498)
+.||+|.|+++..++++..+.++...+. ..-..+.++-.+.|...|..+..+.++.++..|++|-++.+|+++...-
T Consensus 311 Ld~rfg~k~vl~~~lvi~~~~~~~~~~~---~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgr 387 (438)
T COG2270 311 LDERFGSKPVLMIGLVILSIAALYLIFL---EGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGR 387 (438)
T ss_pred HHHHhCCceeehHHHHHHHHHHHHHHHc---cccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhh
Confidence 9999999999999999999999888887 6666777888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcccCCCCchhHHHHhhhHHHHHHHhhcccccCC
Q psy12242 190 ISIVISQILGLGGLLGTADGWPLLLAFTLVPGIYQMITLPFCPES 234 (498)
Q Consensus 190 ~g~~~~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~ 234 (498)
.+..+||++. +....-..+-|..+....++..+.++....+|++
T Consensus 388 a~S~~gp~lv-~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 388 AASFLGPFLV-AVITQITGSSRAGVLSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred HHHHHHHHHH-HHHHHHhcchhhHHHHHHHHHHhhHhhEEeecCC
Confidence 9999999852 2222233456777777777777777777777664
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.4e-09 Score=106.55 Aligned_cols=107 Identities=24% Similarity=0.285 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhh
Q psy12242 90 AVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLA 169 (498)
Q Consensus 90 g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~ 169 (498)
+++.++..++..++.+++++++||+|+|+.+..+.++.+++.++..+.+ ++.+.+++..++.|++.+...+...++++
T Consensus 260 ~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 337 (437)
T TIGR00792 260 SYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAG--SNLPLILVLIILAGFGQNFVTGLVWALVA 337 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6777888999999999999999999999999999988888887776652 45677778888999999999999999999
Q ss_pred ccCc-------ccchhhhHhHHHHHHHHHHHHHHHH
Q psy12242 170 EISP-------VHLRGAVGTVYQLVITISIVISQIL 198 (498)
Q Consensus 170 ~~~~-------~~~r~~~~~~~~~~~~~g~~~~~~i 198 (498)
|..+ ++++|.+.++.+....+|..+++.+
T Consensus 338 ~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i 373 (437)
T TIGR00792 338 DTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFL 373 (437)
T ss_pred hhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 8865 4567999999999999999888875
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.2e-08 Score=110.12 Aligned_cols=146 Identities=10% Similarity=-0.005 Sum_probs=99.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCcc
Q psy12242 330 TAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPG 409 (498)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (498)
...++......+..++..+++|+++||++||+++.....+..+.......... ..++..+++..++.+.......
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~-----~~s~~~l~~~~~l~gi~~a~~~ 126 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFH-----LNSVPLLFAALFLMGIHSALFG 126 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHHHHHhhc
Confidence 34566677788888999999999999999999764322222222111111111 1223334444555555555567
Q ss_pred chhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhccCC
Q psy12242 410 SIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIHGYVFTIFAVLQAMFVLFIYKKVPET 480 (498)
Q Consensus 410 ~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (498)
|...+++.+.+|++.+++++|+.+....++..++|.+.|.+.+..++..+++..++..+...++..+.+++
T Consensus 127 p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (1140)
T PRK06814 127 PIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKT 197 (1140)
T ss_pred hHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 88899999999999999999999999999999999999999998887544444444444444444445543
|
|
| >KOG0569|consensus | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.6e-08 Score=95.12 Aligned_cols=148 Identities=20% Similarity=0.182 Sum_probs=102.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhccchhH------HHHHHHHHH
Q psy12242 80 IEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYE------MIILGRFLI 153 (498)
Q Consensus 80 ~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~r~l~ 153 (498)
++..+. -+..........+..+.+..+.||+|||+.++.+..+..+..+++.......+.. ..+++.++-
T Consensus 302 ~~~~~a----~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~ 377 (485)
T KOG0569|consen 302 FTPEEA----QYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLF 377 (485)
T ss_pred CCHHHH----HHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 566666 7777778888889999999999999999999999999999888877653222222 123333333
Q ss_pred Hhhhhh-hhcchhhhhhccCcccchhhhHhHHHHHHHHHHHHHHHHhcCcccCCCCchhHHHHhhhHHHHHHH-hhcccc
Q psy12242 154 GINSGL-NAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLLGTADGWPLLLAFTLVPGIYQM-ITLPFC 231 (498)
Q Consensus 154 G~~~g~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~-~~~~~~ 231 (498)
.++.+. .-|...-+.+|.+|++.|+.++++......+...+-...-. .+.+..|= +.|++..+++++.. ..++++
T Consensus 378 ~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp--~l~~~~g~-~~filF~i~~~~~~i~~~~~l 454 (485)
T KOG0569|consen 378 IISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFP--PLQNVIGP-YVFILFVIPLAIFLIYLYRYL 454 (485)
T ss_pred HHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhcc-hhhHHHHHHHHHHHHHHHHhC
Confidence 333222 45777888999999999999999988877777666554211 22223333 66666665555544 556779
Q ss_pred cCC
Q psy12242 232 PES 234 (498)
Q Consensus 232 ~e~ 234 (498)
|||
T Consensus 455 PET 457 (485)
T KOG0569|consen 455 PET 457 (485)
T ss_pred ccc
Confidence 998
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.5e-09 Score=98.31 Aligned_cols=134 Identities=11% Similarity=-0.039 Sum_probs=96.0
Q ss_pred HHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHH
Q psy12242 312 NAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSI 391 (498)
Q Consensus 312 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (498)
.......|.+.+++|.+..+.++..+...++..++.++.|++.||+|||+.+..+..+..++.+.. .. ...+
T Consensus 17 ~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~-------~~~~ 88 (355)
T TIGR00896 17 TSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SA-------PGTA 88 (355)
T ss_pred ccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hh-------ccHH
Confidence 334556778889999999999999999999999999999999999999999888776665554433 11 1111
Q ss_pred HHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhh
Q psy12242 392 FCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIH 455 (498)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g 455 (498)
.+....+..+.......+.......|.+| ++|+++.++.+....+|..+++.+.+.+.+..+
T Consensus 89 -~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~ 150 (355)
T TIGR00896 89 -LLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSG 150 (355)
T ss_pred -HHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 11122222222222222334446667776 579999999999999999999999988877654
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.2e-08 Score=108.19 Aligned_cols=132 Identities=9% Similarity=-0.012 Sum_probs=95.3
Q ss_pred hHHHHHhhcCCCc--hhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q psy12242 317 FSTKIFTMAQLSD--TAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCI 394 (498)
Q Consensus 317 ~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (498)
..+.+...++.+. ...++..++..+..+++.+++|+++||+|||+++..+..+..+..++..+.... ..+..+
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l 106 (1146)
T PRK08633 32 IQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYL-----GWFWLA 106 (1146)
T ss_pred HHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHH-----ccHHHH
Confidence 3344444444443 335777788888899999999999999999999988776655555444332211 122333
Q ss_pred HHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q psy12242 395 ILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESI 453 (498)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~ 453 (498)
++..++.+.......+...+++.|.+|++.|++++|+......+|..+++.+.+.+.+.
T Consensus 107 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 107 FAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred HHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444444555677788999999999999999999999999999999999998876
|
|
| >KOG3762|consensus | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.9e-08 Score=93.26 Aligned_cols=154 Identities=12% Similarity=-0.012 Sum_probs=107.9
Q ss_pred hHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhH
Q psy12242 311 INAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMS 390 (498)
Q Consensus 311 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (498)
...+.++.-..+++.+..+..-|.+....-.+.++.-+..+++.+|+|+-+++..++.+..+-++.+... +++
T Consensus 387 ~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L-------~n~ 459 (618)
T KOG3762|consen 387 VGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL-------QNP 459 (618)
T ss_pred HHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh-------cCc
Confidence 3344444444567777777766777777778888899999999999999999999988888877776654 233
Q ss_pred HHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHH-HHHHHHHHHhHHHHHHhhhh-HHHHHHHHHHHH
Q psy12242 391 IFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSIN-WTANFIVGLGFLPIESIIHG-YVFTIFAVLQAM 468 (498)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~-~~~~~~~~~~~~~l~~~~g~-~~~~~~~~~~~~ 468 (498)
|..+-+=.+ .+..-...+....+|++...|++.++++.++..... .+|-.+|++++|.+.+..+. ..|.++++.+++
T Consensus 460 W~vLPieil-qgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~ 538 (618)
T KOG3762|consen 460 WMVLPIEIL-QGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLV 538 (618)
T ss_pred hheeeHHHH-HHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHH
Confidence 333222222 222222233555678899999999999999988775 47888889999998888875 456666666555
Q ss_pred HHHH
Q psy12242 469 FVLF 472 (498)
Q Consensus 469 ~~~~ 472 (498)
..++
T Consensus 539 ~l~~ 542 (618)
T KOG3762|consen 539 TLAL 542 (618)
T ss_pred HHHH
Confidence 4443
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.8e-09 Score=99.93 Aligned_cols=142 Identities=11% Similarity=0.001 Sum_probs=104.9
Q ss_pred cchhhHHHHHHHHHHHHH-HHHHHHHHhHHHHHHhhccchhhHHHHHHHHHHHHHHhhhh---ccchhHHHHHHHHHHHh
Q psy12242 80 IEQSQVTMIFAVAVSIFC-AGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSK---AFSSYEMIILGRFLIGI 155 (498)
Q Consensus 80 ~~~~~~~~~~g~~~s~~~-~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~r~l~G~ 155 (498)
.++++. |++.+... ....++.++.|++.||+|+|+.+..+..+.++..+...... ..++...++....+.++
T Consensus 240 ~s~~~i----g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (390)
T TIGR02718 240 WPLEWI----GRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSL 315 (390)
T ss_pred CCHHHH----HHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHH
Confidence 677777 88887775 46677789999999999999999887766544333322110 01333444555566677
Q ss_pred hhhhhhcchhhhhhccCcc-cchhhhHhHHHHHHHHHHHHHHHHhcCcccCCCCchhHHHHhhhHHHHHHHhh
Q psy12242 156 NSGLNAGLAPMYLAEISPV-HLRGAVGTVYQLVITISIVISQILGLGGLLGTADGWPLLLAFTLVPGIYQMIT 227 (498)
Q Consensus 156 ~~g~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~ 227 (498)
+.+...+...+.+.+..++ +++++.+++.+...++|..++|. +++.+.+..||+..|++.+++.++..+.
T Consensus 316 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~--~~G~l~~~~G~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 316 ITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASS--IAGYLTDRFGYAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 7777778888887777776 88999999999999999999999 4557777789999998887766665443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >KOG2532|consensus | Back alignment and domain information |
|---|
Probab=98.85 E-value=6.6e-08 Score=93.35 Aligned_cols=150 Identities=7% Similarity=-0.020 Sum_probs=123.1
Q ss_pred hcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q psy12242 324 MAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVF 403 (498)
Q Consensus 324 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (498)
++++++.+-+++......+.+++.+.++++.||+|-|+++..+.++.++..++.++..... .+ .++.+-++.+.
T Consensus 67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~-----~~-~~~~~R~lqGl 140 (466)
T KOG2532|consen 67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIG-----FY-LLLVLRFLQGL 140 (466)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhc-----ch-hhHHHHHHhHH
Confidence 4578888999999999999999999999999999999999999999999988888765432 12 33444455555
Q ss_pred HhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHh-hhh-HHHHHHHHHHHHHHHHHHHhccC
Q psy12242 404 FAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESI-IHG-YVFTIFAVLQAMFVLFIYKKVPE 479 (498)
Q Consensus 404 ~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~-~g~-~~~~~~~~~~~~~~~~~~~~~~~ 479 (498)
......|....+...-.|+++|++..++.....++|.+++-.+.|.+-+. .|| ..|++.++++++..++.+.+..+
T Consensus 141 ~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d 218 (466)
T KOG2532|consen 141 GQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSD 218 (466)
T ss_pred HHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcC
Confidence 55556677888888999999999999999999999999999999999998 786 68888888887776665555543
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2e-08 Score=94.22 Aligned_cols=178 Identities=12% Similarity=0.020 Sum_probs=122.4
Q ss_pred hHHHHHHHHHHHHhhchHHHHHhHHHHHhhcC----CCchhHHHHHHHHHHHHHHHHHhhhhhhhcc-CCceehhhhhHH
Q psy12242 295 PLFISMTVMVAQQLSGINAVIYFSTKIFTMAQ----LSDTAAQWATLGMGTMNVVMTLVSLVLVEIS-GRKTLLLIGFMG 369 (498)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~ 369 (498)
.++..+..-+.-.++.|..-.....|+..+.+ ++..++.-.+..++...-+..+++||++||+ |+|+.+..+.++
T Consensus 22 ~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail 101 (498)
T COG3104 22 GLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAIL 101 (498)
T ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 34555555555555555554445455555555 9999988888888888888899999999995 999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCCh--hhHHHHHHHHHHHHHHHHHHHhH
Q psy12242 370 VFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSA--RPLATSLAVSINWTANFIVGLGF 447 (498)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~~~~~~~~~~ 447 (498)
++++.+.+..... .....+.....+........=+....+..|++|+++ |-.+.++.+...++|+.++|.+.
T Consensus 102 ~~iGh~~L~~~~~------~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~ 175 (498)
T COG3104 102 MAIGHLVLAISSV------SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIIT 175 (498)
T ss_pred HHHHHHHHhcccc------ccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHH
Confidence 9999999876420 111122222333334444555777788899998643 56678888888899999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHhcc
Q psy12242 448 LPIESIIHGYVFTIFAVLQAMFVLFIYKKVP 478 (498)
Q Consensus 448 ~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 478 (498)
+++.+..++..-+..+.+.....++.+...+
T Consensus 176 ~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~ 206 (498)
T COG3104 176 GLLAINYGWHVGFGLAAVGMIIGLVIFLLGR 206 (498)
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999975444444444444444343333
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.2e-07 Score=84.64 Aligned_cols=134 Identities=16% Similarity=0.063 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhh
Q psy12242 90 AVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLA 169 (498)
Q Consensus 90 g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~ 169 (498)
+.+.-+-.+...+..+.+.++.+|...+.=...+..+..++.++.+++ ++.+.-+++-.+.+++.|........+..
T Consensus 62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~---~~v~~~l~Gv~las~ssg~GE~tfL~lt~ 138 (402)
T PF02487_consen 62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFS---PSVWVRLLGVVLASLSSGLGEVTFLSLTH 138 (402)
T ss_pred hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeec---cchhHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 334444556666777788889999876655566667888899999998 89999999999999999988888777644
Q ss_pred ccCcccchhhhHhHHHHHHHHHHHHHHHHhcCcccCC-CCchhHHHHhhhHHHHHHHhhccc-ccC
Q psy12242 170 EISPVHLRGAVGTVYQLVITISIVISQILGLGGLLGT-ADGWPLLLAFTLVPGIYQMITLPF-CPE 233 (498)
Q Consensus 170 ~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~-~~~wr~~f~~~~~~~~~~~~~~~~-~~e 233 (498)
.+++ ...+.+..+.+.+.++|+..-. .+.. ..+-|..+++...+.++..+.+++ +|.
T Consensus 139 -~y~~----~~l~~wssGTG~aGl~Ga~~y~--~lT~~g~s~~~tll~~~~lp~~~~~~~f~~L~~ 197 (402)
T PF02487_consen 139 -FYGK----SSLSAWSSGTGGAGLVGALYYL--GLTTLGLSPRTTLLIMLVLPAIFLLSYFFLLPS 197 (402)
T ss_pred -hcCc----cccccccCCcChhhHHHHHHHH--HHHHhCcCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 5553 3567788888888888887432 2222 233477777766655555444444 443
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.82 E-value=6.7e-08 Score=84.51 Aligned_cols=166 Identities=13% Similarity=0.016 Sum_probs=111.5
Q ss_pred chHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhh
Q psy12242 310 GINAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVM 389 (498)
Q Consensus 310 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (498)
..+.+..|.|.+.+.+|+|..+...+.....++..+| ++.|.+.|+.|.+.++.++.....++...+......... ..
T Consensus 17 t~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~-~~ 94 (250)
T PF06813_consen 17 TTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIP-SL 94 (250)
T ss_pred cccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccC-cc
Confidence 4567788999999999999999999988888888775 888999999999999999999999998877665433221 12
Q ss_pred HHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHH
Q psy12242 390 SIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIHGYVFTIFAVLQAMF 469 (498)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~ 469 (498)
+.+.+.......+...............+.+| ++||++.|+.-....+++.+-..+...+.+........+.+....+.
T Consensus 95 ~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v 173 (250)
T PF06813_consen 95 PVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVV 173 (250)
T ss_pred chHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 33333222222222222222333344457888 47999999999999999888888777776653333333444433333
Q ss_pred HHHHHHhcc
Q psy12242 470 VLFIYKKVP 478 (498)
Q Consensus 470 ~~~~~~~~~ 478 (498)
.+....+.+
T Consensus 174 ~l~~~~~vr 182 (250)
T PF06813_consen 174 CLVAMFFVR 182 (250)
T ss_pred HHHHhhhee
Confidence 333333333
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.1e-08 Score=91.29 Aligned_cols=148 Identities=18% Similarity=0.116 Sum_probs=121.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhh
Q psy12242 81 EQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLN 160 (498)
Q Consensus 81 ~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~ 160 (498)
+..+-+..+|.+.+...+.-++.-.+..++.+|+|.|+.++++.++..+=.++++++ ++.+.+.+.+.+.|+-.+..
T Consensus 253 ~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~---~~~~~i~~~klLH~~e~~l~ 329 (412)
T PF01306_consen 253 SAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFA---TNPWVISLIKLLHALEFPLL 329 (412)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT-----SHHHHHHHHHHHHHHHHHH
T ss_pred ccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhh---cchHHHHHHHHHHHHHHHHH
Confidence 344445567999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred hcchhhhhhccCcccchhhhHhHH-HHHHHHHHHHHHHHhcCcccCCCCchhHHHHhhhHHHHHHHhhcc-cccC
Q psy12242 161 AGLAPMYLAEISPVHLRGAVGTVY-QLVITISIVISQILGLGGLLGTADGWPLLLAFTLVPGIYQMITLP-FCPE 233 (498)
Q Consensus 161 ~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~g~~~~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~e 233 (498)
......|+++.+|+|-.++...+. +...++|..+.+. .++.+.++.|.+..|++.+.+.++..+... .+++
T Consensus 330 lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~--~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~ 402 (412)
T PF01306_consen 330 LVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSP--LAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKK 402 (412)
T ss_dssp HHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhh--hHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecC
Confidence 999999999999988877777774 6778888888887 556888889999999887766665554443 3443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.1e-07 Score=93.43 Aligned_cols=150 Identities=16% Similarity=0.148 Sum_probs=96.5
Q ss_pred HhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q psy12242 316 YFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCII 395 (498)
Q Consensus 316 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (498)
...+++..+.|-+ ....++.+...+...++.++.|+++|.+|||..++.+.++..++.+...... +....+
T Consensus 65 ~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~--------~~~~~i 135 (599)
T PF06609_consen 65 SILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQ--------NMNTFI 135 (599)
T ss_pred HHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCC--------cHHHHH
Confidence 3446667777776 4456777788889999999999999999999999999999888888776532 111222
Q ss_pred HHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh-HHHHHHHHHHHHHHHHHH
Q psy12242 396 LVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIHG-YVFTIFAVLQAMFVLFIY 474 (498)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~-~~~~~~~~~~~~~~~~~~ 474 (498)
....+.+. +.+...+....++|..|.+.|..+.++.....-....+++.+...+....+| |.+++..+...++.+..+
T Consensus 136 ag~~l~Gv-gaG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~ 214 (599)
T PF06609_consen 136 AGMVLYGV-GAGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIF 214 (599)
T ss_pred HHHHHHHH-hhHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHH
Confidence 22222222 2233344555678999999998877766654444444555555555444455 556666555555544433
Q ss_pred H
Q psy12242 475 K 475 (498)
Q Consensus 475 ~ 475 (498)
+
T Consensus 215 ~ 215 (599)
T PF06609_consen 215 F 215 (599)
T ss_pred H
Confidence 3
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.4e-07 Score=90.23 Aligned_cols=143 Identities=19% Similarity=0.227 Sum_probs=108.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-hccchhhHHHHHHHHHHHHHHhhhhccc-----hhHHHHHHHHHH
Q psy12242 80 IEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAER-FGRKGGLLINNVFVVLAALLQGFSKAFS-----SYEMIILGRFLI 153 (498)
Q Consensus 80 ~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~r~l~ 153 (498)
.++++. ..+...+....-+..+++|.++|+ +||++.++++.++..+|.++.++++..+ .....+++-.+.
T Consensus 20 ~~~~~A----~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLi 95 (654)
T TIGR00926 20 FSESTS----TVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALI 95 (654)
T ss_pred CcHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHH
Confidence 566666 555566666666778899999996 7999999999999999998887752111 123466778889
Q ss_pred HhhhhhhhcchhhhhhccCccc---chhhhHhHHHHHHHHHHHHHHHHhcCcccC-------CCCchhHHHHhhhHHHHH
Q psy12242 154 GINSGLNAGLAPMYLAEISPVH---LRGAVGTVYQLVITISIVISQILGLGGLLG-------TADGWPLLLAFTLVPGIY 223 (498)
Q Consensus 154 G~~~g~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~-------~~~~wr~~f~~~~~~~~~ 223 (498)
.+|.|++-+...+...|.++++ +|-..+.++..+.++|.++++++.. .+. ...+|...|.+.++..++
T Consensus 96 a~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~--~l~~~~~~fg~~~~~~~aF~i~~i~m~i 173 (654)
T TIGR00926 96 ALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITP--ILRGDVGCFGCQDCYPLAFGVPAILMIL 173 (654)
T ss_pred HhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhcccccCcchHHHHHHHHHHHHH
Confidence 9999999999999999999754 3667888899999999999887532 332 234799999998777766
Q ss_pred HHhhc
Q psy12242 224 QMITL 228 (498)
Q Consensus 224 ~~~~~ 228 (498)
+++..
T Consensus 174 a~lvf 178 (654)
T TIGR00926 174 ALIVF 178 (654)
T ss_pred HHHHH
Confidence 65443
|
|
| >KOG0637|consensus | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.4e-08 Score=91.05 Aligned_cols=110 Identities=16% Similarity=0.366 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHH----hhccchhhH-HHHHHHHHHHHHHhhhhc----------c----chhHHHHHHH
Q psy12242 90 AVAVSIFCAGGIIGGAATGYVAE----RFGRKGGLL-INNVFVVLAALLQGFSKA----------F----SSYEMIILGR 150 (498)
Q Consensus 90 g~~~s~~~~~~~~~~~~~g~l~d----r~Grr~~l~-~~~~~~~~~~~~~~~~~~----------~----~~~~~~~~~r 150 (498)
+.+--..-+...+.+|+.|..+| ||||||.++ .+.....++.++..+++. . .....++++-
T Consensus 70 S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~ 149 (498)
T KOG0637|consen 70 SIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGF 149 (498)
T ss_pred cccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHh
Confidence 45545566677788999999999 599987654 445556666667666621 0 1234456666
Q ss_pred HHHHhhhhhhhcchhhhhhccCcccchhh-hHhHHHHHHHHHHHHHHHHh
Q psy12242 151 FLIGINSGLNAGLAPMYLAEISPVHLRGA-VGTVYQLVITISIVISQILG 199 (498)
Q Consensus 151 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~g~~~~~~i~ 199 (498)
-+.-++.......+.+++.|...++++.+ +++.+..+..+|..+|..++
T Consensus 150 ~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g 199 (498)
T KOG0637|consen 150 WLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALG 199 (498)
T ss_pred HHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeecc
Confidence 77777887889999999999998777666 99999999999999988743
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.78 E-value=9e-08 Score=93.33 Aligned_cols=108 Identities=23% Similarity=0.292 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhh
Q psy12242 90 AVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLA 169 (498)
Q Consensus 90 g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~ 169 (498)
+.+..+..++..++.+++++++||+|+|+.+..+..+.+++.++..+.+. +|.+.+++.-++.|++.+...+...++++
T Consensus 263 ~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~l~gi~~~~~~~~~~a~~a 341 (428)
T PF13347_consen 263 SIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGP-GSPWLVLILFILAGIGYGAFFVIPWAMLA 341 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHh-hhHHHHHHHHHHhHhhhcccccccccccc
Confidence 78888999999999999999999999999999999999999999888821 38999999999999999999999999999
Q ss_pred ccCcc-------cchhhhHhHHHHHHHHHHHHHHHH
Q psy12242 170 EISPV-------HLRGAVGTVYQLVITISIVISQIL 198 (498)
Q Consensus 170 ~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~i 198 (498)
|..+. ++.|...+......-+|..+++.+
T Consensus 342 d~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i 377 (428)
T PF13347_consen 342 DVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAI 377 (428)
T ss_pred cchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHH
Confidence 99873 335788888888888888777764
|
|
| >KOG0253|consensus | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.8e-08 Score=88.05 Aligned_cols=130 Identities=17% Similarity=0.129 Sum_probs=94.4
Q ss_pred HHHHHHHHhHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccch
Q psy12242 98 AGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLR 177 (498)
Q Consensus 98 ~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r 177 (498)
+.-.-|.++.+++.||+|||+.+..+.+++++..++...+ .+-....+.-+..-+..++.+.+.+.|..|.+|.+-|
T Consensus 392 laefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c---~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavR 468 (528)
T KOG0253|consen 392 LAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTC---KTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVR 468 (528)
T ss_pred HhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHh---cCcchhHHHHHHHHHHHhchheEEEEecCcccchhhh
Confidence 4556788999999999999999999999999999888776 3322223333333334455667788999999999999
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhcCcccCCCCchhHHHHhhhHHHHHHHhhcccccCC
Q psy12242 178 GAVGTVYQLVITISIVISQILGLGGLLGTADGWPLLLAFTLVPGIYQMITLPFCPES 234 (498)
Q Consensus 178 ~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~ 234 (498)
+...|.-....-+|.++.|+++. ..+ ..-..+..+.+..++++.+...++|-.
T Consensus 469 atgvGtcSsmaRIggI~~p~iA~---~~e-~s~sl~i~vy~~~~ilagIavcffPiE 521 (528)
T KOG0253|consen 469 ATGVGTCSSMARIGGIFSPVIAM---RAE-LSTSLPIFVYGALFILAGIAVCFFPIE 521 (528)
T ss_pred hcchhhhhhHHhhhhhhhhHHHH---Hhc-cceeehHHHHHHHHHHHHHHheeeeec
Confidence 99999999999999999999752 222 222234445555556666666666543
|
|
| >KOG0255|consensus | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.5e-07 Score=92.76 Aligned_cols=145 Identities=21% Similarity=0.288 Sum_probs=111.3
Q ss_pred hcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q psy12242 324 MAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVF 403 (498)
Q Consensus 324 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (498)
....+.....+..++..++.++|.++.|.++||+|||+++..+..+..++.+...+ ...+......-++.++
T Consensus 112 ~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~--------a~~~~~~~~~Rfl~G~ 183 (521)
T KOG0255|consen 112 LVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAF--------APNYWMFLIFRFLSGF 183 (521)
T ss_pred eeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHH--------hCcHHHHHHHHHHHHh
Confidence 34556666777888899999999999999999999999999999999888876666 3455566666777777
Q ss_pred HhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhH-HHHHHHHHHHHHHHHHHHhccCC
Q psy12242 404 FAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIHGY-VFTIFAVLQAMFVLFIYKKVPET 480 (498)
Q Consensus 404 ~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~ 480 (498)
+..+...+...+..|.++++.|+.+..+ ....+.++.+++...+++.. +|. .+++......+..++ +++.+|.
T Consensus 184 ~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es 257 (521)
T KOG0255|consen 184 FGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPES 257 (521)
T ss_pred hccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcC
Confidence 7777778888999999999999999999 88888899999999988887 442 333333333333333 4444454
|
|
| >KOG3574|consensus | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.9e-06 Score=77.66 Aligned_cols=357 Identities=12% Similarity=0.018 Sum_probs=178.3
Q ss_pred HHhhhhhccccccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHH--
Q psy12242 35 ASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAE-- 112 (498)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~d-- 112 (498)
.+.+. +...|...+..+ .+|.+-+.-+ .|.++. +. .|..+..+. --++|.++.|
T Consensus 35 lLl~L-YllQGiP~GL~~-~iP~lL~ak~----------------vSyt~~----a~-fS~ay~P~s-LKllWaPiVDs~ 90 (510)
T KOG3574|consen 35 LLLFL-YLLQGIPLGLIG-AIPLLLQAKG----------------VSYTSQ----AI-FSFAYWPFS-LKLLWAPIVDSV 90 (510)
T ss_pred HHHHH-HHHcCCchhHhh-hhHHHhcCCC----------------cchhhh----hh-hhhhhhHHH-HHHHHHhhhHHH
Confidence 33344 566788888776 6777655322 444443 22 122222222 2368999999
Q ss_pred ---hhccchhhHH-HHHHHHHHHHHHhhhh--------ccchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhh
Q psy12242 113 ---RFGRKGGLLI-NNVFVVLAALLQGFSK--------AFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAV 180 (498)
Q Consensus 113 ---r~Grr~~l~~-~~~~~~~~~~~~~~~~--------~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~ 180 (498)
|+||||..++ +..+.+..+.+.+... ..++...+....++.-+.++.-..+.-.+.-....+++-|.+
T Consensus 91 y~k~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgya 170 (510)
T KOG3574|consen 91 YSKRFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYA 170 (510)
T ss_pred HHHhhccccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCch
Confidence 9999986543 3333333333332211 013344444556677777777777888888888888999999
Q ss_pred HhHHHHHHHHHHHHHHHHhcCcccCC-------CCchh---------HHHHhhhHHHHHHHhhcccccCChhhHHHhcCC
Q psy12242 181 GTVYQLVITISIVISQILGLGGLLGT-------ADGWP---------LLLAFTLVPGIYQMITLPFCPESPKYILLSKGQ 244 (498)
Q Consensus 181 ~~~~~~~~~~g~~~~~~i~~~~~~~~-------~~~wr---------~~f~~~~~~~~~~~~~~~~~~e~p~~l~~~~~~ 244 (498)
......+.+.|..++..+-+ .+.. ..+|. ...++.+...+++-.+..+..+++.
T Consensus 171 ST~q~Vg~~~GyfL~~~ifL--aL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~-------- 240 (510)
T KOG3574|consen 171 STCQSVGQTAGYFLGNVVFL--ALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKEND-------- 240 (510)
T ss_pred hHHHHHHHhhhHHhhcceee--EecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCc--------
Confidence 98888888888888876422 1111 11221 1122233333333333333222211
Q ss_pred HHHHHHHHHhhcCCchhHHHHHHHHHhHHhhhcCCCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHHhh
Q psy12242 245 ELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTM 324 (498)
Q Consensus 245 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (498)
++ ..++.+..-+...+-++++++-|..+....+....-.. +.......+.-+-+
T Consensus 241 -~~--------------------~~~e~~~~i~~~yk~l~~vLklk~v~~la~i~lt~K~g-----f~a~da~t~LkLle 294 (510)
T KOG3574|consen 241 -ES--------------------VDEELELGIHESYKLLRDVLKLKSVRWLAGILLTGKLG-----FQAADALTSLKLLE 294 (510)
T ss_pred -hh--------------------hhhhhhcCHHHHHHHHHHHHcCccHHHHHHHHHHHHHH-----hhhhhhccchHHHH
Confidence 00 00000000011112445666666544332222222222 22333444555667
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehh------hhhHHHHHHHHHHHH-HHHHhh-hh---hhHHHH
Q psy12242 325 AQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLL------IGFMGVFVVTVLLTI-VMQFVE-IF---VMSIFC 393 (498)
Q Consensus 325 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~------~~~~~~~~~~~~~~~-~~~~~~-~~---~~~~~~ 393 (498)
.|++..+-++...+..-.+++.....|.+.. |+|++.. .- ++.......+.+ ...... .. ...+..
T Consensus 295 ~Gv~ke~Lal~~v~~~plqI~l~~~~gk~ta--~~~pl~~~lka~~~R-~~~~~~~t~Lv~~~~~~~~~~G~~~~~~~il 371 (510)
T KOG3574|consen 295 HGVPKEELALIAVPLVPLQIALPLYIGKWTA--GPRPLNVFLKAVPYR-LGGGLVQTALVWWTPTLGHSDGTFPRGYYIL 371 (510)
T ss_pred cCCChhHheeeeeehhhHHHhhhhhheeecC--CCCcchHHHHhhhHH-HHHHHHHHHHHhhhcccccCCCceeechHHH
Confidence 7999888666554443344444444333322 1222111 11 111122222222 221111 00 111122
Q ss_pred HHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q psy12242 394 IILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESII 454 (498)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~ 454 (498)
.+....+..++........++..+.+.++...|+.+.+.|+..++|+---..+...+.|..
T Consensus 372 ~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~l 432 (510)
T KOG3574|consen 372 LITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGL 432 (510)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccC
Confidence 2222222223322223344557788899999999999999999999888888888877643
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.4e-07 Score=87.79 Aligned_cols=131 Identities=24% Similarity=0.387 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhh
Q psy12242 90 AVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLA 169 (498)
Q Consensus 90 g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~ 169 (498)
++..+.+.++..++.++.|.++||+|||+.+..+.....++.++.++... .+.+.+++.|+++|++.+...+...+++.
T Consensus 42 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 120 (338)
T COG0477 42 GLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPN-VGLALLLILRLLQGLGGGGLLPVASALLS 120 (338)
T ss_pred HHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 89999999999999999999999999998888888776777777777721 24899999999999999999999999999
Q ss_pred ccCcc-cchhhhHhHHHH-HHHHHHHHHHHHhcCcccC--CCCchhHHHHhhhHHHHH
Q psy12242 170 EISPV-HLRGAVGTVYQL-VITISIVISQILGLGGLLG--TADGWPLLLAFTLVPGIY 223 (498)
Q Consensus 170 ~~~~~-~~r~~~~~~~~~-~~~~g~~~~~~i~~~~~~~--~~~~wr~~f~~~~~~~~~ 223 (498)
|+.|+ ++|+...+.... ...+|..+++.++. .+. ...+||..|.........
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 176 (338)
T COG0477 121 EWFPEATERGLAVGLVTLGAGALGLALGPLLAG--LLLGALLWGWRAAFLLAALLGLL 176 (338)
T ss_pred HhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhcchHHHHHHHHHHHHH
Confidence 99997 688998888888 57788888875432 211 456899977666555433
|
|
| >KOG2504|consensus | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.5e-08 Score=95.75 Aligned_cols=144 Identities=21% Similarity=0.276 Sum_probs=125.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc--cchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhh
Q psy12242 80 IEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFG--RKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINS 157 (498)
Q Consensus 80 ~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G--rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~ 157 (498)
.++.+. +.+.++..+...++.++.|+++|+.. ++.+..+++++.+++.+.+.++ ++++.++..-.+.|+..
T Consensus 330 ~~~~~a----a~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~---~~~~~l~~~~~~fG~~~ 402 (509)
T KOG2504|consen 330 LSSNDA----AFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFA---TTYVGLIVFSILFGFCV 402 (509)
T ss_pred CChhhh----HHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHH
Confidence 677777 99999999999999999999999988 4556778888888888888888 99999999999999999
Q ss_pred hhhhcchhhhhhccCcccchhhhHhHHHHHHHHHHHHHHHHhcCcccCCCCc-hhHHHHhhhHHHHHHHhhccccc
Q psy12242 158 GLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLLGTADG-WPLLLAFTLVPGIYQMITLPFCP 232 (498)
Q Consensus 158 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~-wr~~f~~~~~~~~~~~~~~~~~~ 232 (498)
|.........+.|..+.++-..+.|+.....+++.++||++ .+.+.+..+ |...|+..++..++....++..|
T Consensus 403 g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPi--ag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 403 GSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPI--AGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCccc--ceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 99888888899999999999999999999999999999994 446665555 99999999888887776666555
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.66 E-value=0.00011 Score=70.99 Aligned_cols=111 Identities=6% Similarity=-0.082 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHH-HHhHHHHHHhhccchhhHHHHHHHHHHHHHHhhh--hccc------------------------
Q psy12242 89 FAVAVSIFCAGGIIG-GAATGYVAERFGRKGGLLINNVFVVLAALLQGFS--KAFS------------------------ 141 (498)
Q Consensus 89 ~g~~~s~~~~~~~~~-~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~------------------------ 141 (498)
+.++-+...+..++. .++.+++++|++|++++-.....+...-+++++. |..+
T Consensus 45 i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~ 124 (472)
T TIGR00769 45 IPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIA 124 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHH
Confidence 388888887877777 8999999999999999888777776666665554 1001
Q ss_pred --hhHHHHHHHHHHHhhhhhhhc-chhhhhhccCcccchhhhHhHHHHHHHHHHHHHHHHh
Q psy12242 142 --SYEMIILGRFLIGINSGLNAG-LAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILG 199 (498)
Q Consensus 142 --~~~~~~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~ 199 (498)
+.|...+..+...+-...... .-..+..|.++.+|-.|..+++..+.++|..+++.+.
T Consensus 125 ~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~ 185 (472)
T TIGR00769 125 ILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTI 185 (472)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 133334445555555555554 6678899999999999999999999999999999753
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG3810|consensus | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.5e-06 Score=75.91 Aligned_cols=355 Identities=12% Similarity=0.066 Sum_probs=201.5
Q ss_pred HHHHHHHHHHhHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhhccCccc
Q psy12242 96 FCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVH 175 (498)
Q Consensus 96 ~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~ 175 (498)
..-.+.+.-.+.=.+.|..--|+++++-.+.......+.-+. ++.+.+=+.-++-|...+ ...+-.+++-+..+|+
T Consensus 51 wTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g---~sV~~mQvlE~FyG~~tA-aEIAYysYIYs~Vd~~ 126 (433)
T KOG3810|consen 51 WTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFG---PSVKAMQVLEFFYGPATA-AEIAYYSYIYSKVDPE 126 (433)
T ss_pred hhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhc---CCchheeeehhhcChHHH-HHHhhhheeeeecCHH
Confidence 334455666677788999999999998888888888888888 899988888999999876 5677889999999999
Q ss_pred chhhhHhHHHHHHHHHHHHHHHHhcCcccCCCCchhHHHHhhhHHHHHHHhhcccccCChhhHHHhcCCHHHHHHHHHhh
Q psy12242 176 LRGAVGTVYQLVITISIVISQILGLGGLLGTADGWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQRALSWL 255 (498)
Q Consensus 176 ~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~l~~~~~~~~~a~~~~~~~ 255 (498)
++-++.+.-.+..-.|...|..++-...-.+..++...-.++.....++.+...++|..+|.+ ..+.++++.. .
T Consensus 127 ~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl-~f~~~~~~~~-----v 200 (433)
T KOG3810|consen 127 MYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSL-YFHRLEDKIS-----V 200 (433)
T ss_pred HHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhh-hhhcccccce-----e
Confidence 999999998888888777777643212233445666666777777777777788888877654 2222222100 0
Q ss_pred cCCchhHHHHHHHHHhHHhhhcCCCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHHhhcCCCc--hhHH
Q psy12242 256 RGTIEVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTMAQLSD--TAAQ 333 (498)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~ 333 (498)
.+.++.+++ .+..+........-...+.+..++|... ....+.....+++..+.+|...+-++..-++ ...|
T Consensus 201 ~~~e~~~~~-~~~~~~l~~~~~~l~~~l~~~y~np~ll-----~WSlWwAl~scg~~QV~nY~Q~LW~~~~~~~~~vyNG 274 (433)
T KOG3810|consen 201 GDLEEMNPQ-ASYMSYLRGAFVLLWRDLQECYSNPRLL-----KWSLWWALASCGYYQVTNYTQILWKEVAPNPANVYNG 274 (433)
T ss_pred ccchhcCcc-chhhHHHHHHHHHHHHHHHHHhcCchhh-----hhHHHHHHhhchhHHHHHHHHHHHHhhCCCchhhhcC
Confidence 000000000 0000000000011112445556666433 2233334444556677777777666553111 2234
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhh
Q psy12242 334 WATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPW 413 (498)
Q Consensus 334 ~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (498)
..-.+..+.+.++.+..|.+.-+..|+.-+.++..-...+..++. . ... ...+..-....++...+.... ++..
T Consensus 275 ~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~-m-~~t---~~Iw~~Ya~yvlfr~~y~l~i-tiA~ 348 (433)
T KOG3810|consen 275 AVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFI-M-AQT---QHIWVCYAGYVLFRVIYQLTI-TIAT 348 (433)
T ss_pred HHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhh-h-hcc---cceehhhhhHHHHHhhHhhhh-hHHH
Confidence 445666777888888888887666665433333322222211111 1 111 122222233333434443333 4444
Q ss_pred hhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhh-----------h-HHHHHHHHHHHHHHHHHHH
Q psy12242 414 FLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIH-----------G-YVFTIFAVLQAMFVLFIYK 475 (498)
Q Consensus 414 ~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g-----------~-~~~~~~~~~~~~~~~~~~~ 475 (498)
..+++....+.-|...|+.+.+.-+-..+...+ ..|..| + .-+.+++++.++...+.+.
T Consensus 349 ~~iA~nL~~e~~gLvFGiNTFvAl~lQsilT~i---Vvd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~~~~~ 419 (433)
T KOG3810|consen 349 FQIARNLSSELFGLVFGINTFVALILQSILTLI---VVDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGFGIEYL 419 (433)
T ss_pred HHHHHhhhhhhheeeeehHHHHHHHHHHhheEE---EEcccccCCCcceeEEEEeehHHHHHHHHHHHHHHHHH
Confidence 444555567777888888777654444443332 233222 1 2456667776766655443
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.5e-06 Score=77.09 Aligned_cols=136 Identities=13% Similarity=-0.020 Sum_probs=103.5
Q ss_pred HHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHH
Q psy12242 312 NAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSI 391 (498)
Q Consensus 312 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (498)
...-...|.+.+.++.+..+++++......+..++++..+++.+|+|+|+-++.++.++++++.++.-..... .+
T Consensus 30 ~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~-----~y 104 (422)
T COG0738 30 CLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSK-----SY 104 (422)
T ss_pred hcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhh-----hH
Confidence 3445567888888999999999999999999999999999999999999999999999999988875433221 11
Q ss_pred HHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy12242 392 FCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIES 452 (498)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~ 452 (498)
...+...+..+............++..+.|++....-+.+.+.++.+|.+++|.+.+.+..
T Consensus 105 ~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 105 GFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred HHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 1211111112222222234445577788888888889999999999999999999999877
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=6.2e-07 Score=88.05 Aligned_cols=108 Identities=13% Similarity=0.156 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhh
Q psy12242 90 AVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLA 169 (498)
Q Consensus 90 g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~ 169 (498)
++......++..++.++++++.||+|+|+.+.++.++.+++.++..+.+ .++++.+++..++.|+|.+...+...++.+
T Consensus 267 ~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~-~~~~~~~~~~~~l~g~G~~~~~~~~~al~~ 345 (448)
T PRK09848 267 VLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVS-VWSLPVALVALAIASIGQGVTMTVMWALEA 345 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444677888999999999999999999999999888887776642 135677777888999999999999999999
Q ss_pred ccCccc-------chhhhHhHHHHHHHHHHHHHHHH
Q psy12242 170 EISPVH-------LRGAVGTVYQLVITISIVISQIL 198 (498)
Q Consensus 170 ~~~~~~-------~r~~~~~~~~~~~~~g~~~~~~i 198 (498)
|..|.+ ++|...+..+....+|..+++.+
T Consensus 346 ~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i 381 (448)
T PRK09848 346 DTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSI 381 (448)
T ss_pred HhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHH
Confidence 988754 35888999999998999888775
|
|
| >KOG0254|consensus | Back alignment and domain information |
|---|
Probab=98.58 E-value=7.6e-07 Score=88.81 Aligned_cols=139 Identities=15% Similarity=0.090 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccch
Q psy12242 332 AQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSI 411 (498)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (498)
.+++.+...++..++.++.|+++|++|||+.+..+.+...++.++..... .+..+...-++.+....+...+
T Consensus 91 ~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~--------~~~~l~~GR~l~G~g~G~~~~~ 162 (513)
T KOG0254|consen 91 QGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAP--------SWYQLIVGRILTGLGVGGASVL 162 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh--------hHHHHHHHHHHhccchhhhhhc
Confidence 37889999999999999999999999999999999999999988887743 3333344444444444444456
Q ss_pred hhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhh--hhHH-HHHHHHHHHHHHHHHHHhccCC
Q psy12242 412 PWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESII--HGYV-FTIFAVLQAMFVLFIYKKVPET 480 (498)
Q Consensus 412 ~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~--g~~~-~~~~~~~~~~~~~~~~~~~~~~ 480 (498)
...+.+|..|++.||...+..+....+|..++ .+.+...+.. +|.. +.+..+.+++..+. .++.||+
T Consensus 163 ~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pes 232 (513)
T KOG0254|consen 163 APVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPES 232 (513)
T ss_pred chhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCC
Confidence 66799999999999999999998888776666 5566655543 4543 33333344444444 5666654
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.7e-07 Score=85.75 Aligned_cols=141 Identities=23% Similarity=0.323 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhccchhHHH----HHHHHHHHhhhhhhhcchh
Q psy12242 90 AVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMI----ILGRFLIGINSGLNAGLAP 165 (498)
Q Consensus 90 g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~r~l~G~~~g~~~~~~~ 165 (498)
+.+.++..++-.+.-...+++..|+|.|+++.++.+.+++=..+.+... ++.+.. +....++|+.-+..+....
T Consensus 246 g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~--~~~~~~~~~~~l~q~lhG~tf~~~~~a~~ 323 (400)
T PF03825_consen 246 GILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFS--DPWPFIVALQLLGQLLHGLTFGLFHAASV 323 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 6677788888889999999999999999999999999999888887762 333333 3335679999999999999
Q ss_pred hhhhccCcccchhhhHhHHHH-HHHHHHHHHHHHhcCcccCCCCc------hhHHHHhhhHHHHHHHh-hcccccCC
Q psy12242 166 MYLAEISPVHLRGAVGTVYQL-VITISIVISQILGLGGLLGTADG------WPLLLAFTLVPGIYQMI-TLPFCPES 234 (498)
Q Consensus 166 ~~i~~~~~~~~r~~~~~~~~~-~~~~g~~~~~~i~~~~~~~~~~~------wr~~f~~~~~~~~~~~~-~~~~~~e~ 234 (498)
.++.+..|++.|+++.+++.+ ..++|..+|.. ++|++.+..+ |...+.+.+...++..+ ...+.+|+
T Consensus 324 ~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~--igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 324 RYIDRIAPPELRATAQGLYSALSFGLGGAIGSL--IGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred HHHHHhCCccchHHHHHHHHHHHhhHHHHHHHH--HHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 999999999999999999876 46899999998 5567666554 44455555554444433 33444543
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.5e-06 Score=85.24 Aligned_cols=165 Identities=15% Similarity=0.156 Sum_probs=98.3
Q ss_pred HHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhc----cCCceehh-hhhHHHHHHHHHHHHHHHHhhhhh
Q psy12242 314 VIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEI----SGRKTLLL-IGFMGVFVVTVLLTIVMQFVEIFV 388 (498)
Q Consensus 314 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 388 (498)
..+...++.+..|+++..++.+..+.-+...+..++.|+++|| +|||+..+ .+.+..+++..++...+..... .
T Consensus 29 ~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~-~ 107 (444)
T PRK09669 29 MLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGAT-G 107 (444)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcc-h
Confidence 3445555667889999999999999999999999999999999 56655544 5555555554443322111000 1
Q ss_pred hHHHHHHHHHHHHHHHhcCccchhhhhhcccC-CCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhh-------h-HHH
Q psy12242 389 MSIFCIILVIMFVVFFAVGPGSIPWFLVSELF-SQSARPLATSLAVSINWTANFIVGLGFLPIESIIH-------G-YVF 459 (498)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g-------~-~~~ 459 (498)
......+...++...+.. ......++..|.. ++++|.+..+.......+|..+++.+...+....+ + ..+
T Consensus 108 ~~~~~~~~~~l~~~~~t~-~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~ 186 (444)
T PRK09669 108 KIIYACVTYILLSLVYTA-INVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAM 186 (444)
T ss_pred HHHHHHHHHHHHHHHHHh-hcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHH
Confidence 112222222223333332 2233446777776 44678888888888888888888876666554432 2 133
Q ss_pred HHHHHHHHHHHHHHHHhccCC
Q psy12242 460 TIFAVLQAMFVLFIYKKVPET 480 (498)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~ 480 (498)
.++++++.+...+.++..+|+
T Consensus 187 ~i~~ii~~v~~~~~~~~~~e~ 207 (444)
T PRK09669 187 MVMGLLGVVLFFCCFFMTKER 207 (444)
T ss_pred HHHHHHHHHHHHHHhCCeEEe
Confidence 444444444444444444443
|
|
| >KOG4686|consensus | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.4e-06 Score=73.01 Aligned_cols=139 Identities=12% Similarity=0.089 Sum_probs=99.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhhHHHHHHHHH-HHHHHhhhhccchhHHHHHHHHHHHhhhh
Q psy12242 80 IEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVL-AALLQGFSKAFSSYEMIILGRFLIGINSG 158 (498)
Q Consensus 80 ~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~l~G~~~g 158 (498)
++.... +.+.|....-.++.+++.|.++||+|++-..+.+..+..+ +-....+ +++.=+++..+.|++.+
T Consensus 297 lS~~~a----~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F-----t~lsPy~~m~~lGLsys 367 (459)
T KOG4686|consen 297 LSAVSA----GNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF-----TFLSPYTSMTFLGLSYS 367 (459)
T ss_pred CChhhc----cchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh-----hhccHHHHHHHHhhhHH
Confidence 566666 7777777777888999999999999999877766555444 3333333 34444667788899888
Q ss_pred hhhcchhhhhhccCcccchhhhHhHHHHHHHHHHHHHHHHhcCcccCCCC---chhHHHHhh-hHHHHHHHhhcc
Q psy12242 159 LNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLLGTAD---GWPLLLAFT-LVPGIYQMITLP 229 (498)
Q Consensus 159 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~---~wr~~f~~~-~~~~~~~~~~~~ 229 (498)
.........++-..|+++.|++.+..+...++|-.+.|++ .+.+.++. .|--.|.+. +.+++....+.+
T Consensus 368 llAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Ii--ag~i~d~~g~y~~le~ffl~~~~~aL~svgil~ 440 (459)
T KOG4686|consen 368 LLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPII--AGFIADGDGSYDNLEAFFLIIGLMALTSVGILF 440 (459)
T ss_pred HHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhh--hheeecCCCchhhHHHHHHHHHHHHHHHHHHHh
Confidence 7776677788889999999999999999999999999994 44655443 354445443 444444443333
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=7.5e-06 Score=80.37 Aligned_cols=164 Identities=12% Similarity=0.098 Sum_probs=98.7
Q ss_pred HHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhc----cCCceehh-hhhHHHHHHHHHHHHHHHHhhhhhh
Q psy12242 315 IYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEI----SGRKTLLL-IGFMGVFVVTVLLTIVMQFVEIFVM 389 (498)
Q Consensus 315 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (498)
.+...++.+..|+++..++.+..+.-+...+.-++.|+++|| +|||+..+ ++.+.+++...++...+..... ..
T Consensus 30 ~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~-~~ 108 (460)
T PRK11462 30 LYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMN-GK 108 (460)
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcc-hH
Confidence 444455567789999999999999999999999999999997 47766654 4555666655444332211111 11
Q ss_pred HHHHHHHHHHHHHHHhcCccchhhhhhcccCC-CChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhh-------h-HHHH
Q psy12242 390 SIFCIILVIMFVVFFAVGPGSIPWFLVSELFS-QSARPLATSLAVSINWTANFIVGLGFLPIESIIH-------G-YVFT 460 (498)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g-------~-~~~~ 460 (498)
.....+...++..++... .....++..|+.+ +++|.+..+.-.....+|..+++.+...+....+ + ....
T Consensus 109 ~~y~~~~~~~~~~~~t~~-~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~ 187 (460)
T PRK11462 109 MIYAAITYTLLTLLYTVV-NIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIA 187 (460)
T ss_pred HHHHHHHHHHHHHHHHHH-hccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHH
Confidence 111222222222222222 2233456667665 6789999999999999988888887766665443 1 1223
Q ss_pred HHHHHHHHHHHHHHHhccCC
Q psy12242 461 IFAVLQAMFVLFIYKKVPET 480 (498)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~ 480 (498)
+++++.+++..+.+...+|+
T Consensus 188 i~~ii~~i~~~i~~~~~kE~ 207 (460)
T PRK11462 188 VLSVVAFMMLAFCFFTTKER 207 (460)
T ss_pred HHHHHHHHHHHHHHhcceec
Confidence 34444444444444444554
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=9.3e-06 Score=80.22 Aligned_cols=136 Identities=18% Similarity=0.131 Sum_probs=83.2
Q ss_pred HHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhc----cCCcee-hhhhhHHHHHHHHHHHHHHHHhhhhh
Q psy12242 314 VIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEI----SGRKTL-LLIGFMGVFVVTVLLTIVMQFVEIFV 388 (498)
Q Consensus 314 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (498)
..+...++.+..|+++..+|.+..+.-+...+..++.|+++|| +|||+. +..+....+++..++...... .. .
T Consensus 26 ~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~-~~-~ 103 (473)
T PRK10429 26 YMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLF-EG-T 103 (473)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCC-Cc-c
Confidence 3444555567779999999999999999999999999999995 588555 445555555554444221100 00 1
Q ss_pred hHHHHHH-HHHHHHHHHhcCccchhhhhhcccC-CCChhhHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy12242 389 MSIFCII-LVIMFVVFFAVGPGSIPWFLVSELF-SQSARPLATSLAVSINWTANFIVGLGFLPIES 452 (498)
Q Consensus 389 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~ 452 (498)
....... ...++..++.. ......++..|+. ++++|.+..+.-.....+++.+.+.+...+.+
T Consensus 104 ~~~~~~~~~~~l~~~~~t~-~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~ 168 (473)
T PRK10429 104 AQYVFVCVTYILWGMTYTI-MDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVN 168 (473)
T ss_pred HHHHHHHHHHHHHHHHHHH-HcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112222 22222222222 2233445667877 57889888888777777776676665554433
|
|
| >KOG2325|consensus | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.1e-06 Score=81.70 Aligned_cols=185 Identities=10% Similarity=0.039 Sum_probs=120.4
Q ss_pred hhhHHHHHHHHHHHHhhchHHHHHhHHHHHh-hcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCC-ceehhhhhHHH
Q psy12242 293 RIPLFISMTVMVAQQLSGINAVIYFSTKIFT-MAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGR-KTLLLIGFMGV 370 (498)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~-~~~~~~~~~~~ 370 (498)
|+.+.+.....+............--||..+ +.+-+..--|++.....++..+++++.++...|.+. |++++.+.+++
T Consensus 33 wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~ 112 (488)
T KOG2325|consen 33 WRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIA 112 (488)
T ss_pred hHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHH
Confidence 4444555544444333222222223344432 256666778899999999999999999999999886 88899999999
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHH
Q psy12242 371 FVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPI 450 (498)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l 450 (498)
.++.++.......++. ...++++.=+..+.+.+.......|+++..-.+.|.++++..+...-+|.++||.+...+
T Consensus 113 ~~g~llY~~l~~~~~~----~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f 188 (488)
T KOG2325|consen 113 IIGNLLYLALAYVPNG----VKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAF 188 (488)
T ss_pred HHHHHHHHHHHhcccc----hHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHH
Confidence 9999988655444321 222222222333334445567788998887778888888888877777777777665444
Q ss_pred HHhh-------h-------hHHHHHHHHHHHHHHHHHHHhccCCC
Q psy12242 451 ESII-------H-------GYVFTIFAVLQAMFVLFIYKKVPETK 481 (498)
Q Consensus 451 ~~~~-------g-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (498)
.... + ..+.++.+++.++..++...+.+|..
T Consensus 189 ~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~ 233 (488)
T KOG2325|consen 189 TPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVY 233 (488)
T ss_pred hhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecc
Confidence 3211 0 12567777788888887777777654
|
|
| >KOG2533|consensus | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.1e-06 Score=83.33 Aligned_cols=152 Identities=13% Similarity=0.072 Sum_probs=113.2
Q ss_pred hhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q psy12242 323 TMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVV 402 (498)
Q Consensus 323 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (498)
++.+....+.+...+.+.++.+++.+.++.+.||++..+.+.. +.+...++.+.... ..+....+.+-++.+
T Consensus 74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~----~~~~w~~~~~~~~~----~~s~~~~ialr~llG 145 (495)
T KOG2533|consen 74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSV----SGILWGLFGFLTAA----VHSFPGLIALRFLLG 145 (495)
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHH----HHHHHHHHHHHHHH----HhhhHHHHHHHHHHH
Confidence 4456777788899999999999999999999999994433332 22222222222111 233444555566677
Q ss_pred HHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHH------hhhh-HHHHHHHHHHHHHHHHHHH
Q psy12242 403 FFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIES------IIHG-YVFTIFAVLQAMFVLFIYK 475 (498)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~------~~g~-~~~~~~~~~~~~~~~~~~~ 475 (498)
.+..+..|....++..-+.+++|++-+|+.++...+|+++++.+...+.+ ..|| +.|.+-+++.++..+++++
T Consensus 146 l~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~ 225 (495)
T KOG2533|consen 146 LFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFF 225 (495)
T ss_pred HHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEE
Confidence 77777789888999999999999999999999999999999999888654 2344 6788888888888888888
Q ss_pred hccCCCC
Q psy12242 476 KVPETKN 482 (498)
Q Consensus 476 ~~~~~~~ 482 (498)
++|+...
T Consensus 226 ~lp~~P~ 232 (495)
T KOG2533|consen 226 FLPDNPS 232 (495)
T ss_pred EecCChh
Confidence 8876544
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.2e-05 Score=75.81 Aligned_cols=141 Identities=13% Similarity=0.077 Sum_probs=76.9
Q ss_pred hhhhhccccccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHH----
Q psy12242 37 ALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAE---- 112 (498)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~d---- 112 (498)
.+. +++.|...++.....|.+-++... + .+.+|. |. .|+....+. .-++|.++.|
T Consensus 6 ~~L-Y~lQGiP~GL~~gsiPflL~~~~~-------------~-~sy~q~----~~-fSla~~PfS-lKlLWaPiVDs~y~ 64 (544)
T PF13000_consen 6 VLL-YFLQGIPLGLAFGSIPFLLQSMAK-------------K-VSYSQQ----AI-FSLASYPFS-LKLLWAPIVDSVYS 64 (544)
T ss_pred HHH-HHHcCcccccccccchhhhccccC-------------C-CChhHh----ee-eeeeechhH-HHHhhhhhhhhhcc
Confidence 344 577788877755566777554110 1 455554 32 122222222 2356777777
Q ss_pred -hhccchhhHHHH-HHHHHHHHHHhhhh-------------------ccch--hHHHHHHHHHHHhhhhhhhcchhhhhh
Q psy12242 113 -RFGRKGGLLINN-VFVVLAALLQGFSK-------------------AFSS--YEMIILGRFLIGINSGLNAGLAPMYLA 169 (498)
Q Consensus 113 -r~Grr~~l~~~~-~~~~~~~~~~~~~~-------------------~~~~--~~~~~~~r~l~G~~~g~~~~~~~~~i~ 169 (498)
|+||||..++=. .+.++..+..+... ..++ ...+....++.=+-.+.-..+.-.+.-
T Consensus 65 ~~~GRRKSWiiP~Q~l~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWAL 144 (544)
T PF13000_consen 65 KRIGRRKSWIIPIQYLSGILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWAL 144 (544)
T ss_pred cccCCcchhhhHHHHHHHHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhh
Confidence 899998754422 22222222222110 0011 112333333444444555566666777
Q ss_pred ccCcccchhhhHhHHHHHHHHHHHHHHHH
Q psy12242 170 EISPVHLRGAVGTVYQLVITISIVISQIL 198 (498)
Q Consensus 170 ~~~~~~~r~~~~~~~~~~~~~g~~~~~~i 198 (498)
....+++++.+......+.+.|..++..+
T Consensus 145 T~Ls~~n~~~ASTcqtvG~~~Gyfls~tv 173 (544)
T PF13000_consen 145 TMLSPENVGYASTCQTVGQTAGYFLSFTV 173 (544)
T ss_pred hhcChhhcchHHHHHHhHhhhhHHHHHHH
Confidence 77788999999988888888888888764
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >KOG0252|consensus | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.5e-06 Score=78.18 Aligned_cols=120 Identities=9% Similarity=-0.005 Sum_probs=84.5
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhc
Q psy12242 327 LSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAV 406 (498)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (498)
+++...+.+.....++.++|++..|++.||+|||+++-..++++.++.++.++...... +......+...=.+.++...
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~-~~~~m~~L~~~R~~LGiGIG 159 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTS-PLGVMMTLCFFRFLLGIGIG 159 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCC-CcchhhHHHHHHHHhhcccc
Confidence 56667788888899999999999999999999999999888888888774443221111 11222233333344444445
Q ss_pred CccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhH
Q psy12242 407 GPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGF 447 (498)
Q Consensus 407 ~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~ 447 (498)
+=.|+..+.++|....+.||+-.+....++..|...+..+.
T Consensus 160 GDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt 200 (538)
T KOG0252|consen 160 GDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVA 200 (538)
T ss_pred CCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHH
Confidence 56689999999999999999888877666666555544443
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.35 E-value=8e-06 Score=65.89 Aligned_cols=104 Identities=13% Similarity=0.161 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhhcc
Q psy12242 92 AVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEI 171 (498)
Q Consensus 92 ~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~ 171 (498)
-.++.+....+++++.+.+.+++|.|+.++++.+.+.+-.... +- ++.+.++.+-.+.|++.+..++..-.++.+.
T Consensus 42 slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~---~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~ 117 (156)
T PF05978_consen 42 SLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FY---PNSYTLYPASALLGFGAALLWTAQGTYLTSY 117 (156)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-Hh---hhHHHHHHHHHHHhhhhHHhhHhhhHHHHHc
Confidence 3456667778888899999999999999999999988655544 33 7889999999999999999999999999999
Q ss_pred CcccchhhhHhHHHHHHHHHHHHHHHHh
Q psy12242 172 SPVHLRGAVGTVYQLVITISIVISQILG 199 (498)
Q Consensus 172 ~~~~~r~~~~~~~~~~~~~g~~~~~~i~ 199 (498)
.++++|++..+++......+.++|.++.
T Consensus 118 s~~~~~~~~~~ifw~i~~~s~i~G~~~~ 145 (156)
T PF05978_consen 118 STEETIGRNTGIFWAIFQSSLIFGNLFL 145 (156)
T ss_pred CCHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998888888887753
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.31 E-value=4.2e-05 Score=69.59 Aligned_cols=153 Identities=16% Similarity=0.005 Sum_probs=95.5
Q ss_pred HHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q psy12242 321 IFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMF 400 (498)
Q Consensus 321 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (498)
+.+++|++..+++.++........+...+.|.+.||+|||+..+..+++..++++.--. ..+..+++.-++
T Consensus 60 LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~---------~~~~~L~~GRvl 130 (354)
T PF05631_consen 60 LYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHS---------SNYPVLLLGRVL 130 (354)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc---------cccHHHHHHHHH
Confidence 44678999999999999999999999999999999999999988888877777764322 222233333333
Q ss_pred HHHHhcCccchhhh-hhccc----CCCChhhHHHHHHHHH-HHHHHHHHHHhHHHHHHhhhh---HHHHHHHHHHHHHHH
Q psy12242 401 VVFFAVGPGSIPWF-LVSEL----FSQSARPLATSLAVSI-NWTANFIVGLGFLPIESIIHG---YVFTIFAVLQAMFVL 471 (498)
Q Consensus 401 ~~~~~~~~~~~~~~-~~~~~----~p~~~~~~~~g~~~~~-~~~~~~~~~~~~~~l~~~~g~---~~~~~~~~~~~~~~~ 471 (498)
.+.......+..-+ ++.|. +|++..+...+..... +.+..+.++.+.-.+.+..+. .+|.....+.+++.+
T Consensus 131 gGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~ 210 (354)
T PF05631_consen 131 GGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAV 210 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHH
Confidence 33333222222111 23333 5666666666666633 334455555555566666553 356666666666666
Q ss_pred HHHHhccCCCC
Q psy12242 472 FIYKKVPETKN 482 (498)
Q Consensus 472 ~~~~~~~~~~~ 482 (498)
++....+|..+
T Consensus 211 ~I~~~W~ENyg 221 (354)
T PF05631_consen 211 LILKTWPENYG 221 (354)
T ss_pred HHHhcccccCC
Confidence 66555666544
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=98.31 E-value=4e-05 Score=73.11 Aligned_cols=111 Identities=17% Similarity=0.187 Sum_probs=88.5
Q ss_pred hhhHHHHHHHHHHHHHHhhhhccchh------HHHHHHHHHHHhhhhhhhcchhhhhhccCccc---chhhhHhHHHHHH
Q psy12242 118 GGLLINNVFVVLAALLQGFSKAFSSY------EMIILGRFLIGINSGLNAGLAPMYLAEISPVH---LRGAVGTVYQLVI 188 (498)
Q Consensus 118 ~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~ 188 (498)
|+++++.+++.+|.++..++...+.. +.++++-.+.++|.|+.-|...++.+|.++++ +|.+.+.++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 56788889999999985554322333 67899999999999999999999999999865 4667888999999
Q ss_pred HHHHHHHHHHhcCcccCCCCchhHHHHhhhHHHHHHHhhccc
Q psy12242 189 TISIVISQILGLGGLLGTADGWPLLLAFTLVPGIYQMITLPF 230 (498)
Q Consensus 189 ~~g~~~~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 230 (498)
++|..++.. ...++.++.+|.+.|.+.++..+++++.++.
T Consensus 82 n~G~~~~~~--~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 82 NIGSLFSPT--LVPYIQQNYGWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHH--CCCHHHHCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHhhcc--cchhhccccchhhhhhHHHHHHHHHHHHHHh
Confidence 999999998 5557778899999999988777776655443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.3e-06 Score=60.25 Aligned_cols=80 Identities=14% Similarity=0.079 Sum_probs=70.8
Q ss_pred ccccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhhHHH
Q psy12242 44 HGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLIN 123 (498)
Q Consensus 44 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~ 123 (498)
.|..+..+.+.+|.+.++.+ ++.++. |++.+..++||.+|++...++.++..+++.+..+
T Consensus 4 mGigRFayTplLP~M~~~~~----------------ls~~~a----g~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~ 63 (85)
T PF06779_consen 4 MGIGRFAYTPLLPLMQADGG----------------LSLSQA----GWLASANYLGYLVGALLASRLPRHSRPRRLLRAG 63 (85)
T ss_pred hhhHHHHHHhHhHHHHHhcC----------------CCHHHH----HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 34566667888999999988 888888 9999999999999999999999998889999999
Q ss_pred HHHHHHHHHHHhhhhccchhHHH
Q psy12242 124 NVFVVLAALLQGFSKAFSSYEMI 146 (498)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~ 146 (498)
.+...+..+.+++. ++.+..
T Consensus 64 l~~~~~~~~~ma~~---~~~~~w 83 (85)
T PF06779_consen 64 LLLTVLSTAAMALT---HSFWLW 83 (85)
T ss_pred HHHHHHHHHHHHHH---hchHHH
Confidence 99999999999998 666543
|
Note that many members are hypothetical proteins. |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.5e-05 Score=78.44 Aligned_cols=174 Identities=15% Similarity=0.006 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHhhchHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccC-----CceehhhhhHHHH
Q psy12242 297 FISMTVMVAQQLSGINAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISG-----RKTLLLIGFMGVF 371 (498)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g-----~~~~~~~~~~~~~ 371 (498)
.+....++.+... ........+++.+++|++..+.+.......+...+-.+ .|.++||++ ||+.+.++.++..
T Consensus 29 ~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~ 106 (468)
T TIGR00788 29 AIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGS 106 (468)
T ss_pred HHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHH
Confidence 3444455555554 44445555666677899999998888888888877554 999999996 5555555544432
Q ss_pred -HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhH---HHHHHHHHHHHHHHHHHHhH
Q psy12242 372 -VVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPL---ATSLAVSINWTANFIVGLGF 447 (498)
Q Consensus 372 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~~g~~~~~~~~~~~~~~~~~ 447 (498)
+....+.. . + ..............+...........+..|..+ +.++. ..+.......+|..+++.+.
T Consensus 107 ~~~~~~l~~---~-~---~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~ 178 (468)
T TIGR00788 107 AILYGLLPG---K-V---SSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLG 178 (468)
T ss_pred HHHHHhccc---c-c---chHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHH
Confidence 22111111 1 1 111111112233333333344566778888887 44433 33344444558999999999
Q ss_pred HHHHHhhhh-HHHHHHHHHHHHHHHHHHHhccCCC
Q psy12242 448 LPIESIIHG-YVFTIFAVLQAMFVLFIYKKVPETK 481 (498)
Q Consensus 448 ~~l~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (498)
|.+.+..++ ..+.+.+.+.++. .+...+.+|.+
T Consensus 179 G~l~~~~~~~~~f~~~a~l~ll~-~~~~~~~~E~~ 212 (468)
T TIGR00788 179 GPLLDKTLTRILFLITAALLLLQ-LFVSNLSKERR 212 (468)
T ss_pred HHHHHhcCcchHHHHHHHHHHHH-HHHHHhccccc
Confidence 999988776 3455555555554 44445567754
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00031 Score=67.72 Aligned_cols=90 Identities=9% Similarity=-0.018 Sum_probs=51.0
Q ss_pred hhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHHHHHHHHHHHHHHHhcC--cccCCC--Cch--hHHHH
Q psy12242 142 SYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLG--GLLGTA--DGW--PLLLA 215 (498)
Q Consensus 142 ~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~--~~~~~~--~~w--r~~f~ 215 (498)
.++..++.-++.|++.+........+.+ .+|++ .+..+..+.+++++++.++.+. ....+. ..+ ..-|.
T Consensus 105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~----~~~a~~~G~g~aGv~~s~~~ii~~a~~~~~~~~~~~a~~YF~ 179 (437)
T TIGR00939 105 FFVTTMASVVIINSGMALLQGSLFGLAG-VFPST----YSSAVMSGQGLAGVLTSLAMILVKASGNDSHGLKKSALGYFG 179 (437)
T ss_pred HHHHHHHHHHHHHhhhhhhcccchhhcc-cCCHH----HHHHHHhcchhHHHHHHHHHHHHHHhcCCccchhhhhhhHHH
Confidence 4667777888999999988888887766 55643 3444455556665555543211 011111 122 23334
Q ss_pred hhhHHHHHHHhhcccccCChh
Q psy12242 216 FTLVPGIYQMITLPFCPESPK 236 (498)
Q Consensus 216 ~~~~~~~~~~~~~~~~~e~p~ 236 (498)
+..++.++.++....+++.|.
T Consensus 180 ~a~~v~l~~i~~~~~l~k~~~ 200 (437)
T TIGR00939 180 TPCVVQLICIVCYLLLPKLPF 200 (437)
T ss_pred HHHHHHHHHHHHHHHHhcCHH
Confidence 445555555555556677763
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.2e-05 Score=74.76 Aligned_cols=107 Identities=20% Similarity=0.275 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhh
Q psy12242 90 AVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLA 169 (498)
Q Consensus 90 g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~ 169 (498)
.+.......+..++.+++.++.+|+|+|+++.++.++.+++.++..+.+ .++.+.+++..++.+++.+...+...++++
T Consensus 275 ~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~-~~~~~l~~~~~~i~~~g~~~~~~l~wam~~ 353 (467)
T COG2211 275 YLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTP-AGSVVLIVVALIIAGVGTGIANPLPWAMVA 353 (467)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhc-CcchHHHHHHHHHHHHHhhccccccHHHhc
Confidence 5666777777778899999999999999999999999999999999885 357888899999999999999999999999
Q ss_pred ccCc-------ccchhhhHhHHHHHHHHHHHHHHH
Q psy12242 170 EISP-------VHLRGAVGTVYQLVITISIVISQI 197 (498)
Q Consensus 170 ~~~~-------~~~r~~~~~~~~~~~~~g~~~~~~ 197 (498)
|..+ .+.-|...+......=+|..++..
T Consensus 354 d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~ 388 (467)
T COG2211 354 DTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGF 388 (467)
T ss_pred chhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHH
Confidence 8875 233355666666555555555543
|
|
| >KOG4332|consensus | Back alignment and domain information |
|---|
Probab=98.20 E-value=1e-05 Score=69.40 Aligned_cols=85 Identities=20% Similarity=0.326 Sum_probs=61.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhh
Q psy12242 80 IEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGL 159 (498)
Q Consensus 80 ~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 159 (498)
..+.++ |.+.-..+-...+...+.|.++|+-|||+..+.-++.+.+++ .....+.+-.++++|.+-|++.+.
T Consensus 69 FgkG~I----gqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC----iTKhSpqYkVLmVGR~LGGiaTsL 140 (454)
T KOG4332|consen 69 FGKGDI----GQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC----ITKHSPQYKVLMVGRVLGGIATSL 140 (454)
T ss_pred ccCCcc----ceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH----HhhcCCceEEEeehhhhhhHHHHH
Confidence 344555 555555556667777889999999999997766555554443 333338899999999999999998
Q ss_pred hhcchhhh-hhccC
Q psy12242 160 NAGLAPMY-LAEIS 172 (498)
Q Consensus 160 ~~~~~~~~-i~~~~ 172 (498)
.+.+-.++ +.|.-
T Consensus 141 LFSaFEsWliaEHn 154 (454)
T KOG4332|consen 141 LFSAFESWLIAEHN 154 (454)
T ss_pred HHHHHHHHHHHHhh
Confidence 88877665 45554
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.16 E-value=7.6e-05 Score=67.54 Aligned_cols=137 Identities=14% Similarity=0.163 Sum_probs=101.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh-ccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhh
Q psy12242 80 IEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERF-GRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSG 158 (498)
Q Consensus 80 ~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g 158 (498)
.|..+. |++.+...+.....++....+++|. .+|+..+....++.++...+.+.| ....++. -++.|+|.|
T Consensus 240 ~sa~~a----G~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P---~~~~~lw-~~llG~G~G 311 (395)
T COG2807 240 LSAAEA----GSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAP---GQLPILW-ALLLGLGQG 311 (395)
T ss_pred CCHHHh----hhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhh---hhHHHHH-HHHHhCccc
Confidence 788888 9999999999999999999999965 567777888888888888887873 3222222 489999999
Q ss_pred hhhcchhhhhhccCcc-cchhhhHhHHHHHHHHHHHHHHHHhcCccc-CCCCchhHHHHhhhHHHHHHHh
Q psy12242 159 LNAGLAPMYLAEISPV-HLRGAVGTVYQLVITISIVISQILGLGGLL-GTADGWPLLLAFTLVPGIYQMI 226 (498)
Q Consensus 159 ~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~-~~~~~wr~~f~~~~~~~~~~~~ 226 (498)
..++.+...+.+..+. ++-++..++.+....+=..+||.+ .+++ ....+|+......+...+...+
T Consensus 312 ~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l--~G~lhDa~gsw~~~~~~l~~~~i~m~i 379 (395)
T COG2807 312 GAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWL--FGFLHDATGSWSAPLVLLALATLLMLI 379 (395)
T ss_pred hHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhh--HhHHHHhcCChHHHHHHHHHHHHHHHH
Confidence 9999999999998864 444555666665555556666763 3344 4456898888776655555443
|
|
| >KOG1237|consensus | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00038 Score=69.16 Aligned_cols=137 Identities=13% Similarity=0.144 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHh-hccchhhHHHHHHHHHHHHHHhhhhccc----------------------hhHHH
Q psy12242 90 AVAVSIFCAGGIIGGAATGYVAER-FGRKGGLLINNVFVVLAALLQGFSKAFS----------------------SYEMI 146 (498)
Q Consensus 90 g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~ 146 (498)
.-..+.+.-......+.+++++|- +||-+++.++.++..++..+..++...+ ....+
T Consensus 76 a~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~ 155 (571)
T KOG1237|consen 76 ANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVL 155 (571)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHH
Confidence 555666666677778899999997 5888999999999888866554432111 12356
Q ss_pred HHHHHHHHhhhhhhhcchhhhhhccCc---cc-ch--hhhHhHHHHHHHHHHHHHHHHhcCcccCCCCchhHHHHhhhHH
Q psy12242 147 ILGRFLIGINSGLNAGLAPMYLAEISP---VH-LR--GAVGTVYQLVITISIVISQILGLGGLLGTADGWPLLLAFTLVP 220 (498)
Q Consensus 147 ~~~r~l~G~~~g~~~~~~~~~i~~~~~---~~-~r--~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~wr~~f~~~~~~ 220 (498)
+...-+..+|.|+.-+...++-+|-++ ++ ++ ...+.++....++|..++..+- .+..+..+|.+-|.+..+.
T Consensus 156 ~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~--vyiq~~~~w~lgf~i~~~~ 233 (571)
T KOG1237|consen 156 YGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVL--VYIQDNVGWKLGFGIPTVL 233 (571)
T ss_pred HHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHH--HhhhhcccceeeccHHHHH
Confidence 677778888999999999999999998 32 22 3677888888899998887743 3666788999999887666
Q ss_pred HHHHHhhc
Q psy12242 221 GIYQMITL 228 (498)
Q Consensus 221 ~~~~~~~~ 228 (498)
.+++++++
T Consensus 234 ~~lai~iF 241 (571)
T KOG1237|consen 234 NALAILIF 241 (571)
T ss_pred HHHHHHHH
Confidence 55555433
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.3e-08 Score=98.41 Aligned_cols=145 Identities=17% Similarity=0.189 Sum_probs=97.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccc
Q psy12242 331 AAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGS 410 (498)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (498)
..+.......++..+|.++.|+++||+|||+.+..+..+..++.++..+.... .....+...-.+.++...+..+
T Consensus 47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~R~~~G~~~g~~~~ 121 (451)
T PF00083_consen 47 LSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSY-----NNFWMLLIGRFLIGFGIGGAYV 121 (451)
T ss_pred HHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccc-----cccccccccccccccccccccc
Confidence 45677888899999999999999999999999999999988888877764311 0233333333444444445557
Q ss_pred hhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHhccCC
Q psy12242 411 IPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIH---GYVFTIFAVLQAMFVLFIYKKVPET 480 (498)
Q Consensus 411 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (498)
....++.|..|++.|+...++.+....+|..++..+.-...+..+ |........+..+...+...+.||.
T Consensus 122 ~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pES 194 (451)
T PF00083_consen 122 VSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPES 194 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 777899999999999999999888887777776665443322222 4333333333332333344556654
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG3762|consensus | Back alignment and domain information |
|---|
Probab=98.14 E-value=3.3e-06 Score=79.84 Aligned_cols=141 Identities=16% Similarity=0.153 Sum_probs=122.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcc
Q psy12242 84 QVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGL 163 (498)
Q Consensus 84 ~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~ 163 (498)
..++..|........|-++.-++.+++.+|+|+-+++.+++.+..+=.+..+.. +|.|+.+..-+++|+..+..+.+
T Consensus 403 ~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L---~n~W~vLPieilqgit~aliWaa 479 (618)
T KOG3762|consen 403 GIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL---QNPWMVLPIEILQGITHALIWAA 479 (618)
T ss_pred CcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh---cCchheeeHHHHHHHHHHHHHHH
Confidence 344555878888888889999999999999999999999999999999999998 99999999999999999999999
Q ss_pred hhhhhhccCcccchhhhHhHHHH-HHHHHHHHHHHHhcCcccCCCCchhHHHHhhhHHHHHHHhhcc
Q psy12242 164 APMYLAEISPVHLRGAVGTVYQL-VITISIVISQILGLGGLLGTADGWPLLLAFTLVPGIYQMITLP 229 (498)
Q Consensus 164 ~~~~i~~~~~~~~r~~~~~~~~~-~~~~g~~~~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~ 229 (498)
..+|+++..||+-|..+-++.+. ..++|--+|.+ +++.+.+..+=|..|.+.++.+++.++...
T Consensus 480 ~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~Gsl--IGG~~v~~fg~~ttf~~~giAcl~~l~~~~ 544 (618)
T KOG3762|consen 480 IISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSL--IGGFVVERFGARTTFRIFGIACLVTLALFI 544 (618)
T ss_pred HHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhh--hhhhhheeehhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998765 46888888888 556778888889999888777776665443
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00014 Score=73.73 Aligned_cols=160 Identities=10% Similarity=0.019 Sum_probs=104.2
Q ss_pred HHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhc-cCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHH
Q psy12242 314 VIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEI-SGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIF 392 (498)
Q Consensus 314 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (498)
...+..++.+..|++...+..+...+....-+..+++++++|+ +|+++.+..+.++..++..++.+.............
T Consensus 7 ~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~ 86 (654)
T TIGR00926 7 RTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDL 86 (654)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHH
Confidence 3444455556678988888888777777777888899999996 699999999988888888777653211100011111
Q ss_pred HHHHHHHHHHHHhcCccchhhhhhcccCCCC---hhhHHHHHHHHHHHHHHHHHHHhHHHHHHhh-------hh-HHHHH
Q psy12242 393 CIILVIMFVVFFAVGPGSIPWFLVSELFSQS---ARPLATSLAVSINWTANFIVGLGFLPIESII-------HG-YVFTI 461 (498)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~-------g~-~~~~~ 461 (498)
.......++.++..+.-|...+...|.++++ .+.+...+.....++|+.+++.+.+++.+.. ++ ..+.+
T Consensus 87 ~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i 166 (654)
T TIGR00926 87 LDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGV 166 (654)
T ss_pred HHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHH
Confidence 1223333344444445566677777877653 3667888888888999999999999887553 23 24444
Q ss_pred HHHHHHHHHHHH
Q psy12242 462 FAVLQAMFVLFI 473 (498)
Q Consensus 462 ~~~~~~~~~~~~ 473 (498)
.+++.+++.++.
T Consensus 167 ~~i~m~ia~lvf 178 (654)
T TIGR00926 167 PAILMILALIVF 178 (654)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0003 Score=65.30 Aligned_cols=145 Identities=18% Similarity=0.264 Sum_probs=116.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHH-hhccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhh
Q psy12242 80 IEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAE-RFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSG 158 (498)
Q Consensus 80 ~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~d-r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g 158 (498)
.+..+. .-+...+..|..++-...|++.. |.++|+.-.+++....++..+..++....+.+.+...-++.|++.|
T Consensus 241 msv~eT----T~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G 316 (403)
T PF03209_consen 241 MSVGET----TRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNG 316 (403)
T ss_pred CCHHHH----HHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhh
Confidence 677887 77888889999999999999887 6788888888888888887776666555788999999999999999
Q ss_pred hhhcchhhhhhccCcccchhhhHhHHHHHHHHHHHHHHHHhcC------ccc--CCCCchhHHHHhhhHHHHHHHhhc
Q psy12242 159 LNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLG------GLL--GTADGWPLLLAFTLVPGIYQMITL 228 (498)
Q Consensus 159 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~------~~~--~~~~~wr~~f~~~~~~~~~~~~~~ 228 (498)
.......+.+.|...+++.|..+|.+...+.++..++..++-. .+. ....+|-.+|.+.++..++.+.+.
T Consensus 317 ~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll 394 (403)
T PF03209_consen 317 LFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLL 394 (403)
T ss_pred HHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998888877777764311 111 234578888888777666655443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG2816|consensus | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00018 Score=69.50 Aligned_cols=136 Identities=17% Similarity=0.152 Sum_probs=101.0
Q ss_pred HHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcc
Q psy12242 339 MGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSE 418 (498)
Q Consensus 339 ~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (498)
.++..++.++..|.++||+|||..+........+..+.+.+.. ++..+. .-..+ ..........++++|
T Consensus 71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~---------~~~~~~-~~l~g-~~~~~~s~~~a~vad 139 (463)
T KOG2816|consen 71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG---------YWFFLL-LGLSG-GFSAIFSVGFAYVAD 139 (463)
T ss_pred hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH---------HHHhhh-ccccc-chhhhhhhhhhheee
Confidence 3677888899999999999999999888877777666665532 122111 11111 112233556778899
Q ss_pred cCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHhccCCCCCCH
Q psy12242 419 LFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIHG-YVFTIFAVLQAMFVLFIYKKVPETKNKTQ 485 (498)
Q Consensus 419 ~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (498)
....+.|....|+.+.....+..++|.+.+.+....+. ..+.+..+..++..+.....+||+..++.
T Consensus 140 is~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~ 207 (463)
T KOG2816|consen 140 ISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKE 207 (463)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccc
Confidence 99999999999999999999999999999999998775 56667777777777778888888765443
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.84 E-value=8.3e-05 Score=52.04 Aligned_cols=61 Identities=11% Similarity=0.113 Sum_probs=51.4
Q ss_pred hchHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHH
Q psy12242 309 SGINAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMG 369 (498)
Q Consensus 309 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~ 369 (498)
+......-|.+.+.++.|+++.++|.+..+..+..+++.++.|+++||.++++........
T Consensus 14 ~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 14 AALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence 3445666677778888999999999999999999999999999999999998877655433
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0007 Score=58.64 Aligned_cols=243 Identities=11% Similarity=0.080 Sum_probs=110.2
Q ss_pred cchhhhHhHHHHHHHHHHHHHHHHhcCc---ccCCCCchhHHHHhhhHHHHHHHhhcccccCChhhHHHhcCCHHHHHHH
Q psy12242 175 HLRGAVGTVYQLVITISIVISQILGLGG---LLGTADGWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQRA 251 (498)
Q Consensus 175 ~~r~~~~~~~~~~~~~g~~~~~~i~~~~---~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~l~~~~~~~~~a~~~ 251 (498)
|+|+....+...+.++|..+.-.--+.. .......|++++.+.+++.++-++++.++-+. -.. ..++ +
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~-fd~-~~~~-~------ 72 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFGKN-FDI-YSPK-E------ 72 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-ccc-cCcc-c------
Confidence 6677777777788888888764421100 11113469999988887776666555443111 000 0000 0
Q ss_pred HHhhcCCchhHHHHHHHHHhHHhhhcCCCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHHhhc--CC--
Q psy12242 252 LSWLRGTIEVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTMA--QL-- 327 (498)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~-- 327 (498)
+++.++.+.+++.+..+.+|++..|.- ......+..... ......+...+.... +.
T Consensus 73 -----------------k~~k~~~~~~~~~s~~~~LK~K~tw~w-~~~Yg~wLv~~V--~p~t~~~~~~~~~~s~~ni~~ 132 (267)
T PF07672_consen 73 -----------------KQEKENSTLSKKPSYKSILKEKETWKW-ILIYGIWLVVVV--FPFTPSWFNILIWISPANIKS 132 (267)
T ss_pred -----------------ccccccccccccchHHHHHccchHHHH-HHHHHHHheeEE--EeccchhHhHhhhcCcccccc
Confidence 011111122344678899999876643 222222222110 010111112121111 11
Q ss_pred --Cchh----HHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHH--HhhhhhhHHHHHHHHHH
Q psy12242 328 --SDTA----AQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQ--FVEIFVMSIFCIILVIM 399 (498)
Q Consensus 328 --~~~~----~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 399 (498)
+... ..........+..+|.+..|...+.--+|+..+.....+.+.+..+..... .............+..+
T Consensus 133 ~~~~~~~~~~~~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~F 212 (267)
T PF07672_consen 133 VVSGGGFNWIIPIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGF 212 (267)
T ss_pred cccccccchhhHHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence 1111 122333334444455566666666443444433333222222222222111 11111223334455556
Q ss_pred HHHHHhcCccchhhhhhccc--CCCChhhHHHHHHHHHHHHHHHHHHHh
Q psy12242 400 FVVFFAVGPGSIPWFLVSEL--FSQSARPLATSLAVSINWTANFIVGLG 446 (498)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~--~p~~~~~~~~g~~~~~~~~~~~~~~~~ 446 (498)
+.+.+.-+..++......|. ..++..|...|+.-.++++.-.+.-.+
T Consensus 213 l~G~f~WgiQ~ViL~lPhEyK~~~pk~ig~~Fg~iWGfGY~~yTi~~Ii 261 (267)
T PF07672_consen 213 LAGFFLWGIQGVILNLPHEYKGYNPKKIGIQFGLIWGFGYIFYTIYDII 261 (267)
T ss_pred HHHHHHHhhhHHHhcChhhhcCCCcceehhHHHHHHHHHHHHHHHHHHH
Confidence 66667777766655555444 234455666676666666554444433
|
|
| >KOG1479|consensus | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.017 Score=54.01 Aligned_cols=89 Identities=10% Similarity=0.096 Sum_probs=47.3
Q ss_pred hhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHHHHHHHHHHHHHHHhcC---cccCCCCchhHHHHhhh
Q psy12242 142 SYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLG---GLLGTADGWPLLLAFTL 218 (498)
Q Consensus 142 ~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~---~~~~~~~~wr~~f~~~~ 218 (498)
.+...++.-.+.+++.|..........++. |+|.-.-. ..+.++++.+..++.+. ..-....+=..-|.++.
T Consensus 116 ff~vt~~~vv~~~~a~a~~qgs~~G~a~~~-P~~ytqav----m~G~a~aG~l~Sl~~i~tka~~~~~~~sA~~yF~~s~ 190 (406)
T KOG1479|consen 116 FFLVTLIIVVLLNLANAVVQGSLYGLAGLF-PSEYTQAV----MSGQALAGTLTSLLRILTKAAFSDSRTSALIYFITST 190 (406)
T ss_pred hHHHHHHHHHHHhhhhhhhccchhhhhhcC-CHHHHHHH----HhcchhHhHHHHHHHHHHHHhcCCCCceeehhHHHHH
Confidence 456667777888888887777766665554 54443322 23334444433332211 12222333344555566
Q ss_pred HHHHHHHhhcccccCCh
Q psy12242 219 VPGIYQMITLPFCPESP 235 (498)
Q Consensus 219 ~~~~~~~~~~~~~~e~p 235 (498)
+..++.++....+|..|
T Consensus 191 ~~~llC~i~y~~l~~lp 207 (406)
T KOG1479|consen 191 VILLLCFVLYLVLPKLP 207 (406)
T ss_pred HHHHHHHHHHHHhhcch
Confidence 66566555555667766
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.084 Score=50.50 Aligned_cols=113 Identities=13% Similarity=-0.010 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHH-HHHHHHHhHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhc-------------------cc-h---
Q psy12242 87 MIFAVAVSIFCA-GGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKA-------------------FS-S--- 142 (498)
Q Consensus 87 ~~~g~~~s~~~~-~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~-------------------~~-~--- 142 (498)
..++++-+..-+ +..+..++.+++.+++.|.+++-..+..+...-+++++.-. .+ +
T Consensus 61 e~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~ 140 (509)
T COG3202 61 ESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKW 140 (509)
T ss_pred hhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCcccee
Confidence 334777777777 77788899999999999999988877777777777766411 01 1
Q ss_pred ------hHHHHHHHHHHHhhhhhhhc-chhhhhhccCcccchhhhHhHHHHHHHHHHHHHHHHh
Q psy12242 143 ------YEMIILGRFLIGINSGLNAG-LAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILG 199 (498)
Q Consensus 143 ------~~~~~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~ 199 (498)
.|...+...+.=+=.+.... .-.....|.+..+|-.|..++++.+.+++..++..+.
T Consensus 141 ~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~ 204 (509)
T COG3202 141 FILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVT 204 (509)
T ss_pred eeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 12233333333332222222 3445678888889999999999999999999988753
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.075 Score=52.01 Aligned_cols=110 Identities=14% Similarity=0.007 Sum_probs=70.7
Q ss_pred HHHHHHHHH-HHHHHHHhHHHHHHhhccchhhHHHHHHHHHHHHHHhhh--hc----cch--------------------
Q psy12242 90 AVAVSIFCA-GGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFS--KA----FSS-------------------- 142 (498)
Q Consensus 90 g~~~s~~~~-~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~----~~~-------------------- 142 (498)
..+-....+ ...+......+++||++|++++-+....+...-.+.++. |. +++
T Consensus 61 ~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~ 140 (491)
T PF03219_consen 61 PFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAM 140 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHH
Confidence 555444444 344556789999999999998877766666555555543 10 011
Q ss_pred --hHHHHHHHHHHHhhhhhhhc-chhhhhhccCcccchhhhHhHHHHHHHHHHHHHHHHh
Q psy12242 143 --YEMIILGRFLIGINSGLNAG-LAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILG 199 (498)
Q Consensus 143 --~~~~~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~ 199 (498)
.|.+.+..++.-+-.....+ .-..+..|.++.+|-.|..+++..+.++|.++++.+.
T Consensus 141 ~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~ 200 (491)
T PF03219_consen 141 FRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLT 200 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222233333333233222 3467788999999999999999999999999988753
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0012 Score=64.03 Aligned_cols=157 Identities=16% Similarity=0.077 Sum_probs=92.1
Q ss_pred hHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccC----Ccee-hhhhhHHHHHHHHHHHHHHHHhhhhhhHH
Q psy12242 317 FSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISG----RKTL-LLIGFMGVFVVTVLLTIVMQFVEIFVMSI 391 (498)
Q Consensus 317 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (498)
..+++.+++|.++.+...+.....+-.. ..++.|.++|-+. ||+. ++++..+..++...+......... ..
T Consensus 12 ~~~~l~~~l~ls~~~~~~~~~~~~lPw~-~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s--~~- 87 (433)
T PF03092_consen 12 IYPFLKDDLGLSPAQLQRLSSLASLPWS-IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESS--AA- 87 (433)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhCchH-HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccch--hh-
Confidence 3456678889999987776655554444 3678899999873 4444 444555554444444443221111 11
Q ss_pred HHHHHHHHHHHHHhcCccchhhhhhcccC---CCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh-HHHHHHHHHHH
Q psy12242 392 FCIILVIMFVVFFAVGPGSIPWFLVSELF---SQSARPLATSLAVSINWTANFIVGLGFLPIESIIHG-YVFTIFAVLQA 467 (498)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~-~~~~~~~~~~~ 467 (498)
......+...........+..++..|.. |.+ +|...+.......+|+.++..+.|.+.+..+. ..+.+.+.+..
T Consensus 88 -~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~ 165 (433)
T PF03092_consen 88 -IAVVLLFLASFGYAFADVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPL 165 (433)
T ss_pred -hHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHH
Confidence 1111112222222222334455556664 434 78888888889999999999999999988775 34555555555
Q ss_pred HHHHHHHHhccC
Q psy12242 468 MFVLFIYKKVPE 479 (498)
Q Consensus 468 ~~~~~~~~~~~~ 479 (498)
+..+......+|
T Consensus 166 l~~~~~~~~~~e 177 (433)
T PF03092_consen 166 LMLIVALFLLEE 177 (433)
T ss_pred HHHHHHHHhhhh
Confidence 555455555554
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0066 Score=58.88 Aligned_cols=122 Identities=11% Similarity=0.015 Sum_probs=78.9
Q ss_pred hhHHHHHHHHHHHHHHH-HHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhh--------------------
Q psy12242 330 TAAQWATLGMGTMNVVM-TLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFV-------------------- 388 (498)
Q Consensus 330 ~~~~~~~~~~~~~~~~~-~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 388 (498)
+...++-+...+...+. .++.+++++|++|+++.............++.+......+..
T Consensus 43 e~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~ 122 (472)
T TIGR00769 43 EIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGF 122 (472)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHH
Confidence 45555555554444444 788899999999999887766666666655555432111100
Q ss_pred ----hHHHHHHHHHHHHHHHhcCccc-hhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy12242 389 ----MSIFCIILVIMFVVFFAVGPGS-IPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIES 452 (498)
Q Consensus 389 ----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~ 452 (498)
..|. ..+..+..-..+....+ +.+.+++|.+..++..+-+++.....++|..+++.+..++.+
T Consensus 123 i~~~~~W~-~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 123 IAILRIWS-FALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111 11122222222222223 678899999999999999999999999999999998888763
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0003 Score=49.22 Aligned_cols=44 Identities=20% Similarity=0.454 Sum_probs=38.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhhHHHHHHH
Q psy12242 80 IEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFV 127 (498)
Q Consensus 80 ~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~ 127 (498)
++..++ |.+.++..+...++.+++|.++||+|+++.++....++
T Consensus 32 l~~~~i----Gil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 32 LSPSQI----GILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred CCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 678888 99999999999999999999999999998877765543
|
|
| >KOG2563|consensus | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.003 Score=59.22 Aligned_cols=129 Identities=16% Similarity=-0.009 Sum_probs=82.7
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q psy12242 325 AQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFF 404 (498)
Q Consensus 325 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (498)
+| +...+-+...++.+..++..+.+.|+.||+|-|....++.....++..+=.......-++..........-.+....
T Consensus 75 Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~A 153 (480)
T KOG2563|consen 75 YG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAA 153 (480)
T ss_pred hc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHh
Confidence 45 66666778888999999999999999999999999999988888877664443221100011111111111111111
Q ss_pred hcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q psy12242 405 AVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESII 454 (498)
Q Consensus 405 ~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~ 454 (498)
......++.=...--+|+++|+++..+....+.+|.+++..+-+.+..+.
T Consensus 154 q~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~ 203 (480)
T KOG2563|consen 154 QPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSS 203 (480)
T ss_pred hhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCC
Confidence 11111111123334579999999999999999999999888877776554
|
|
| >KOG3626|consensus | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0092 Score=60.17 Aligned_cols=141 Identities=11% Similarity=-0.013 Sum_probs=107.3
Q ss_pred HHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhh-----
Q psy12242 312 NAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEI----- 386 (498)
Q Consensus 312 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 386 (498)
..+....+.+-+.++++..+.|++...+-++..+......+...|..|-+.+-.+.++++++.++..+-....+.
T Consensus 114 ~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~ 193 (735)
T KOG3626|consen 114 GYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYEL 193 (735)
T ss_pred hhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhh
Confidence 455555566678889999999999999999999999999999999999999999999999988887653111000
Q ss_pred ---------------------------------------hhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhH
Q psy12242 387 ---------------------------------------FVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPL 427 (498)
Q Consensus 387 ---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 427 (498)
....+..+++.-++.+.+.....++..+|+.|...++....
T Consensus 194 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~Spl 273 (735)
T KOG3626|consen 194 EVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPL 273 (735)
T ss_pred hhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcH
Confidence 01133444445555566666677888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH
Q psy12242 428 ATSLAVSINWTANFIVGLGFLPIES 452 (498)
Q Consensus 428 ~~g~~~~~~~~~~~~~~~~~~~l~~ 452 (498)
..|+...+..+|-++|-.+++....
T Consensus 274 Ylgi~~~~~~lGPaiGfllgS~~l~ 298 (735)
T KOG3626|consen 274 YLGILYSMAILGPAIGFLLGSFCLK 298 (735)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 9999999988888888777776643
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.023 Score=45.99 Aligned_cols=106 Identities=11% Similarity=-0.004 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhh
Q psy12242 335 ATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWF 414 (498)
Q Consensus 335 ~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (498)
-..+......+..++.+.+.+++|.|+.++++.+...+-...... ... ..+.....+.++.....+...-.
T Consensus 42 slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~--------~~~-~~l~~~s~l~G~~~a~lW~aqg~ 112 (156)
T PF05978_consen 42 SLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY--------PNS-YTLYPASALLGFGAALLWTAQGT 112 (156)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh--------hhH-HHHHHHHHHHhhhhHHhhHhhhH
Confidence 345556667777888899999999999999888777655544332 122 22233333344444444455556
Q ss_pred hhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHH
Q psy12242 415 LVSELFSQSARPLATSLAVSINWTANFIVGLGFLP 449 (498)
Q Consensus 415 ~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 449 (498)
++.+...++.+++..++...+...+.++|..+.-.
T Consensus 113 ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~ 147 (156)
T PF05978_consen 113 YLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFF 147 (156)
T ss_pred HHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888889999998888888777777665433
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0001 Score=73.15 Aligned_cols=144 Identities=13% Similarity=-0.029 Sum_probs=1.3
Q ss_pred hhchHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhh-
Q psy12242 308 LSGINAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEI- 386 (498)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 386 (498)
...........+.+.++++++..++|++.+..-++.++..++..++.+|-.|-+.+..+.++++++.+++.+-......
T Consensus 16 ~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y 95 (539)
T PF03137_consen 16 MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPY 95 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCC
Confidence 3334444555567778899999999999999999999999999999999888888888888888888776542111000
Q ss_pred --------------------------------------h---hhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChh
Q psy12242 387 --------------------------------------F---VMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSAR 425 (498)
Q Consensus 387 --------------------------------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 425 (498)
. ...+..+++.-++.+..+....++..+|+.|.++++..
T Consensus 96 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~s 175 (539)
T PF03137_consen 96 SYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNS 175 (539)
T ss_dssp --------------------------------------------------------SSS---------------------
T ss_pred ccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccC
Confidence 0 01122223333344444444667788999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy12242 426 PLATSLAVSINWTANFIVGLGFLPIE 451 (498)
Q Consensus 426 ~~~~g~~~~~~~~~~~~~~~~~~~l~ 451 (498)
+...|+......+|-++|-.+++...
T Consensus 176 plYiGi~~~~~~lGPa~Gf~lg~~~L 201 (539)
T PF03137_consen 176 PLYIGILYAMSILGPALGFLLGSFCL 201 (539)
T ss_dssp --------------------------
T ss_pred ccchhhhhHHhhccHHHHHHHHHHHH
Confidence 99999999988888877766666554
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.00037 Score=64.33 Aligned_cols=110 Identities=14% Similarity=0.029 Sum_probs=2.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcc-CCceehhhhhHHHHHHHHHHHHHHHHhh----h--hhhHHHHHHHHHHHHHHHhcC
Q psy12242 335 ATLGMGTMNVVMTLVSLVLVEIS-GRKTLLLIGFMGVFVVTVLLTIVMQFVE----I--FVMSIFCIILVIMFVVFFAVG 407 (498)
Q Consensus 335 ~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~ 407 (498)
....++++..+|+.+..+..-+. .+|++. ...+.=.+..-++......+. . ....+.. ++..+..++...-
T Consensus 187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~-~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~-~i~~~l~g~TNGy 264 (309)
T PF01733_consen 187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLW-ILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWF-IILMLLFGFTNGY 264 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcchhcceeEecccccccHH-HHHHHHHHHHHHHHHHHhhcccccCCCcccchHHH-HHHHHHHHHccch
Confidence 45678999999999888753221 233333 222222222111111111100 0 0111222 2222222222333
Q ss_pred ccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHh
Q psy12242 408 PGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLG 446 (498)
Q Consensus 408 ~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~ 446 (498)
..+....+..+..++++|..+-.+....-..|-.+|..+
T Consensus 265 l~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~l 303 (309)
T PF01733_consen 265 LSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVL 303 (309)
T ss_dssp --HHHH---------------------------------
T ss_pred hhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446677788888888888777777766666666666544
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >KOG3097|consensus | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.063 Score=48.34 Aligned_cols=99 Identities=15% Similarity=0.174 Sum_probs=68.2
Q ss_pred HHHHHHHHHHhHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcc-
Q psy12242 96 FCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPV- 174 (498)
Q Consensus 96 ~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~- 174 (498)
..+..+..+++.+.+..++|-|.+++++...+...-..-- - +.+..++-.-...|++.+..+..--+|+++.-..
T Consensus 67 ~y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~Nl-~---pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~y 142 (390)
T KOG3097|consen 67 LYLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIAANL-E---PRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNY 142 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhc-c---hhHHhhccHHHhhccccccccccCcceecHHHHHH
Confidence 3445556666777999999999999998877665433322 2 7788999999999999999988888887766542
Q ss_pred -cch-------------hhhHhHHHHHHHHHHHHHHHH
Q psy12242 175 -HLR-------------GAVGTVYQLVITISIVISQIL 198 (498)
Q Consensus 175 -~~r-------------~~~~~~~~~~~~~g~~~~~~i 198 (498)
++| +..+.+++...-.|.+++..+
T Consensus 143 a~~~~~q~~~~~~~~ffg~Ffii~~~~qv~gn~issli 180 (390)
T KOG3097|consen 143 ANQRGEQAGDGMKVRFFGEFFIIFQCAQVWGNLISSLI 180 (390)
T ss_pred HHhhhhhccCceeeeehhHHHHHHHHHHHHHHHHHHHH
Confidence 334 233444555555555555543
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.059 Score=53.57 Aligned_cols=108 Identities=13% Similarity=0.103 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhccchhhHHHHHH--HH-HHH-HHHhhhhccchh-HHHHHHHHHHHhhhhhhhcc
Q psy12242 89 FAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVF--VV-LAA-LLQGFSKAFSSY-EMIILGRFLIGINSGLNAGL 163 (498)
Q Consensus 89 ~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~--~~-~~~-~~~~~~~~~~~~-~~~~~~r~l~G~~~g~~~~~ 163 (498)
++.+.+++.+|.++|+.+++++.++--++.. .+-+.+ .+ ++. ++....+....+ ..++..-++.++..|+..|.
T Consensus 52 ~~~ii~~fl~glalGs~l~~~~~~~~~~~~~-~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~G~~~Pl 130 (521)
T PRK03612 52 FSTVIGLMLFAMGVGALLSKYLLRDAAAGFV-AVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLIGMEIPL 130 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3899999999999999999988744333322 111111 11 111 111111000111 22344456778888888888
Q ss_pred hhhhhhccCcccchhhhHhHHHHHHHHHHHHHHHH
Q psy12242 164 APMYLAEISPVHLRGAVGTVYQLVITISIVISQIL 198 (498)
Q Consensus 164 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i 198 (498)
...+..+... ++-++..|-......+|..+|.++
T Consensus 131 ~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~ 164 (521)
T PRK03612 131 LMRILQRIRD-QHLGHNVATVLAADYLGALVGGLA 164 (521)
T ss_pred HHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHH
Confidence 7776665432 223455566666666666666664
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.017 Score=40.84 Aligned_cols=68 Identities=19% Similarity=0.129 Sum_probs=58.5
Q ss_pred HHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHH
Q psy12242 313 AVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIV 380 (498)
Q Consensus 313 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~ 380 (498)
.++-..|.+.++.++|..+.+++.+...++.++|.+...++.++.++++.+..+.+...+....+.+.
T Consensus 10 ayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~ 77 (85)
T PF06779_consen 10 AYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT 77 (85)
T ss_pred HHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556788889999999999999999999999999999999999888888888888777777776654
|
Note that many members are hypothetical proteins. |
| >KOG0637|consensus | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.0073 Score=56.77 Aligned_cols=154 Identities=10% Similarity=-0.026 Sum_probs=96.5
Q ss_pred hhHHHHHHHHHHHHhhchHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhc----cCCceehh-hhhH
Q psy12242 294 IPLFISMTVMVAQQLSGINAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEI----SGRKTLLL-IGFM 368 (498)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~g~~~~~~-~~~~ 368 (498)
+.++......+..+++.. .-..|.+.+.+..|.+....+.......+.+++.+++.|..+|| +|||+..+ .+..
T Consensus 32 ~~li~v~~ia~Gvqf~wA-~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~ 110 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWA-LELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL 110 (498)
T ss_pred HHHHHHHHHHHHHHHHHH-HHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence 455666666666666544 44455556667789999988888888899999999999999997 57777655 4455
Q ss_pred HHHHHHHHHHHHHHHhhh----h-h--hHH-HHHHHHHHH-HHHHhcCccchhhhhhcccCCCChhhH-HHHHHHHHHHH
Q psy12242 369 GVFVVTVLLTIVMQFVEI----F-V--MSI-FCIILVIMF-VVFFAVGPGSIPWFLVSELFSQSARPL-ATSLAVSINWT 438 (498)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~----~-~--~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~g~~~~~~~~ 438 (498)
..+++.+++++....... . . ... ..+.++.+. .=+.........-++..|+..++.+.+ +++....+..+
T Consensus 111 ~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~av 190 (498)
T KOG0637|consen 111 LIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAV 190 (498)
T ss_pred HHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHh
Confidence 555666665554332211 1 1 111 111111111 112222344556778888887777777 88888888888
Q ss_pred HHHHHHHhHH
Q psy12242 439 ANFIVGLGFL 448 (498)
Q Consensus 439 ~~~~~~~~~~ 448 (498)
|+.+|=.+.+
T Consensus 191 GnvLGY~~g~ 200 (498)
T KOG0637|consen 191 GNVLGYALGS 200 (498)
T ss_pred cceeeeeccc
Confidence 7777654444
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.29 Score=46.48 Aligned_cols=149 Identities=9% Similarity=0.059 Sum_probs=90.4
Q ss_pred hHHHHHHHHHHHHhhchHHHHHhHHHHHhh-cCCCchhHHHHHHHHHH-HHHHHHHhhhhhhhccCCceehhhhhHHHHH
Q psy12242 295 PLFISMTVMVAQQLSGINAVIYFSTKIFTM-AQLSDTAAQWATLGMGT-MNVVMTLVSLVLVEISGRKTLLLIGFMGVFV 372 (498)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~ 372 (498)
..+..+...++..+- -.-.+..|++.+. .|++..+..--..+... ..++..+....+.|.++.|++++++.+...+
T Consensus 6 ~~~llc~~gf~~~fr--PsEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~ 83 (412)
T PF01770_consen 6 ITLLLCLFGFFKEFR--PSEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYII 83 (412)
T ss_pred HHHHHHHHHHHHhcC--CCCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 444444444443332 2334566777765 78988876544333332 3445556678889999999999988877777
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy12242 373 VTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIES 452 (498)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~ 452 (498)
...++.+.. ....+.+.-+.++...+ .-...++++-...|+++--++.+......-.|.+++..++-.+..
T Consensus 84 t~~lll~~~-------sv~~mq~~q~~yg~~~a--~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs 154 (412)
T PF01770_consen 84 TWLLLLFGT-------SVLAMQLMQFFYGLATA--AEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVS 154 (412)
T ss_pred HHHHHHHHC-------cHHHHHHHHHHHHHHHH--HHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766665531 11112122222222221 123444566667788888889998888888888888877776665
Q ss_pred hh
Q psy12242 453 II 454 (498)
Q Consensus 453 ~~ 454 (498)
..
T Consensus 155 ~~ 156 (412)
T PF01770_consen 155 FG 156 (412)
T ss_pred hc
Confidence 33
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.12 Score=47.37 Aligned_cols=133 Identities=17% Similarity=0.106 Sum_probs=81.6
Q ss_pred HHhHHHHHhhcCCCc--hhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHH
Q psy12242 315 IYFSTKIFTMAQLSD--TAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIF 392 (498)
Q Consensus 315 ~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (498)
....+.+....+.+. ...+.......+...++.+..|.+.||.|||+.+..+......+.+...+... ....
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 95 (338)
T COG0477 22 SPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPN------VGLA 95 (338)
T ss_pred HHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCcc------chHH
Confidence 334444555555544 36778888888888888899999999999996666655443333222222111 0111
Q ss_pred HHHHHHHHHHHHhcCccchhhhhhcccCCC-ChhhHHHHHHHH-HHHHHHHHHHHhHHHHHHh
Q psy12242 393 CIILVIMFVVFFAVGPGSIPWFLVSELFSQ-SARPLATSLAVS-INWTANFIVGLGFLPIESI 453 (498)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~g~~~~-~~~~~~~~~~~~~~~l~~~ 453 (498)
.........+.......+....+..|..|. +.|+...+.... ....+..+++.+.+.+...
T Consensus 96 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (338)
T COG0477 96 LLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA 158 (338)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111222212233334456777788899887 678888888777 5667778888766666655
|
|
| >KOG3098|consensus | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.17 Score=48.72 Aligned_cols=102 Identities=20% Similarity=0.289 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHhHHHHH---HhhccchhhHHHHHHHHHHHHHHhhhhc---------------cchhHHHHHHHHHHHhh
Q psy12242 95 IFCAGGIIGGAATGYVA---ERFGRKGGLLINNVFVVLAALLQGFSKA---------------FSSYEMIILGRFLIGIN 156 (498)
Q Consensus 95 ~~~~~~~~~~~~~g~l~---dr~Grr~~l~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~r~l~G~~ 156 (498)
...+|..+++.+.+.+. +++||++.+.++.++..++.++.-.+.. .+++...++.-++.|++
T Consensus 287 ~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~ 366 (461)
T KOG3098|consen 287 GIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFG 366 (461)
T ss_pred HHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhH
Confidence 33444555555566666 4689999999999999888888766421 12466778889999999
Q ss_pred hhhhhcchhhhhhccCcccchhhhHhHHHHHHHHHHHHHHH
Q psy12242 157 SGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQI 197 (498)
Q Consensus 157 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 197 (498)
.+........++.+.. +++|..+.++...-..++..++..
T Consensus 367 D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f 406 (461)
T KOG3098|consen 367 DACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFF 406 (461)
T ss_pred HHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999 488899999988888888777554
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.039 Score=52.09 Aligned_cols=60 Identities=18% Similarity=0.174 Sum_probs=56.4
Q ss_pred chhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHHHHHHHHHHHHHHHhc
Q psy12242 141 SSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGL 200 (498)
Q Consensus 141 ~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~ 200 (498)
++.|..++.-+..|+..|..++.....+.|-.++++|..+++....+-++|.+++.++++
T Consensus 333 psi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l 392 (402)
T PF02487_consen 333 PSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGL 392 (402)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 788999999999999999999999999999999999999999999999999999998664
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.91 Score=45.32 Aligned_cols=142 Identities=10% Similarity=0.035 Sum_probs=67.3
Q ss_pred hcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHH---HHHHHHHHHHhhhhhhHHHHHHHHHHH
Q psy12242 324 MAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVV---TVLLTIVMQFVEIFVMSIFCIILVIMF 400 (498)
Q Consensus 324 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (498)
..|.+....+.+...+-.+..+|+.+++++.++..++.... -..+..++ ..++....... ...........+.
T Consensus 44 ~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~-e~~i~l~~~~~~~ll~~~~~~~---~~~~~~~~~~~~~ 119 (521)
T PRK03612 44 LLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAV-ELLLALLGGLSALILYAAFAFQ---GLSRLLLYVLVLL 119 (521)
T ss_pred HhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 34777777777777777777888887777653322222111 11111111 11111111100 0111111111222
Q ss_pred HHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHH-hhhh-HHHHHHHHHHHHHH
Q psy12242 401 VVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIES-IIHG-YVFTIFAVLQAMFV 470 (498)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~-~~g~-~~~~~~~~~~~~~~ 470 (498)
..+......|+..-+..+. ..+..+...|-.+..+.+|+++|+.+.+.+.- ..|. ....+.+.+.++.+
T Consensus 120 ~~~l~G~~~Pl~~~~~~~~-~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a 190 (521)
T PRK03612 120 IGLLIGMEIPLLMRILQRI-RDQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAA 190 (521)
T ss_pred HHHHHHHHHHHHHHHHHhc-cccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 2222222235443333222 12234667788888889999999998887654 4553 34444444444443
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.31 Score=47.00 Aligned_cols=127 Identities=17% Similarity=0.099 Sum_probs=93.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhhHHHHHHHHHHHHHHh---hhhcc----chhHHHHHHHHH
Q psy12242 80 IEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQG---FSKAF----SSYEMIILGRFL 152 (498)
Q Consensus 80 ~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~r~l 152 (498)
.++..+ |..-+...+....+.....++.+|+|..|.=..++..-.....++. +.+.. .+...++.+-.+
T Consensus 290 ~s~~~i----gi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~ 365 (432)
T PF06963_consen 290 YSPSVI----GIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIAL 365 (432)
T ss_pred CCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHH
Confidence 677777 9999999999999999999999999998877777665443333332 22211 244555666666
Q ss_pred HHhhhhhhhcchhhhhhccCcccchhhhHhHHHHHHHHHHHHHHHHhcCcccCCCCch
Q psy12242 153 IGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLLGTADGW 210 (498)
Q Consensus 153 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~w 210 (498)
.=+|.=.......-++.|..|+++||...+......++-.++...+++...-.++.+|
T Consensus 366 SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~~~P~~F~~ 423 (432)
T PF06963_consen 366 SRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIFPRPSQFGW 423 (432)
T ss_pred HHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhccCChHhcCh
Confidence 6667667778888899999999999999999999999999988886552233333444
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=95.06 E-value=2.8 Score=41.35 Aligned_cols=111 Identities=13% Similarity=0.024 Sum_probs=68.6
Q ss_pred HHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhh-----h-------------------hhHHHHHHHH
Q psy12242 342 MNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEI-----F-------------------VMSIFCIILV 397 (498)
Q Consensus 342 ~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-------------------~~~~~~~~~~ 397 (498)
+.++...+-.++++++++.++.............++++......+ . ...|...+..
T Consensus 71 ~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfY 150 (491)
T PF03219_consen 71 VAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFY 150 (491)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHH
Confidence 344555677899999999988766555555555555544321111 0 0011111111
Q ss_pred HHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy12242 398 IMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIES 452 (498)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~ 452 (498)
...-...+....-+-+.+++|....++..+-+++.....+++..+++.+...+.+
T Consensus 151 v~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 151 VMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111121222457899999999999999999999999999999998888777
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.13 Score=49.16 Aligned_cols=114 Identities=9% Similarity=-0.019 Sum_probs=68.0
Q ss_pred ehhhhhHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCC---hhhHHHHHHHHHHH
Q psy12242 362 LLLIGFMGVFVVTVLLTIVMQFVEI-FVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQS---ARPLATSLAVSINW 437 (498)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~~~ 437 (498)
.+.++.++..++.+++.+....... .......+.....+......+.=|....+..|.++++ .|.+.....+...+
T Consensus 3 tI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in 82 (372)
T PF00854_consen 3 TILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGIN 82 (372)
T ss_dssp HHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHh
Confidence 4556677777777775554332211 0111122233333344555566677788888888765 45667778888899
Q ss_pred HHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q psy12242 438 TANFIVGLGFLPIESIIHGYVFTIFAVLQAMFVLFIYK 475 (498)
Q Consensus 438 ~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 475 (498)
+|..++..+.+++.+..++...+....++.+.+++.+.
T Consensus 83 ~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~ 120 (372)
T PF00854_consen 83 IGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFL 120 (372)
T ss_dssp HHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999975444444444444444443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG3880|consensus | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.1 Score=46.54 Aligned_cols=135 Identities=15% Similarity=0.028 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhh
Q psy12242 90 AVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLA 169 (498)
Q Consensus 90 g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~ 169 (498)
|.+.-.-.+...+..+.+..+.||+---+=..+...+.+.+.++.+++ ++.++-+.+-.+..++.|.....-.++-+
T Consensus 65 g~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs---~s~~~sL~GV~~aSissGlGEiTFL~lss 141 (409)
T KOG3880|consen 65 GAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFS---NSVPMSLLGVVFASISSGLGEITFLALSS 141 (409)
T ss_pred chhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEec---cchhHHHhhhhhhhhcCCcceeehhhhhc
Confidence 334444455666677777788888543333334446777788888888 89999999999999998877666555433
Q ss_pred ccCcccchhhhHhHHHHHHHHHHHHHHHHhcCcccCC--CCchhHHHHhhhHHHHHHHhhc-ccccCC
Q psy12242 170 EISPVHLRGAVGTVYQLVITISIVISQILGLGGLLGT--ADGWPLLLAFTLVPGIYQMITL-PFCPES 234 (498)
Q Consensus 170 ~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~--~~~wr~~f~~~~~~~~~~~~~~-~~~~e~ 234 (498)
.+++ ...+.+..+.+.+.++|..-- .++.+ ...-|...++...+.++..... +.++++
T Consensus 142 -~Y~~----~~i~~WSSGTGgAGliGa~SY--a~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~p 202 (409)
T KOG3880|consen 142 -RYPS----IVIAGWSSGTGGAGLIGASSY--AFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKSP 202 (409)
T ss_pred -cCCC----ceeccccCCCCcchhhhhhHH--HHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCCC
Confidence 3332 334444555555555554421 12222 3445667766654444444444 334433
|
|
| >KOG1237|consensus | Back alignment and domain information |
|---|
Probab=93.03 E-value=3 Score=42.06 Aligned_cols=172 Identities=14% Similarity=0.072 Sum_probs=103.1
Q ss_pred HHHHHHHHHhhchHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhc-cCCceehhhhhHHHHHHHHHH
Q psy12242 299 SMTVMVAQQLSGINAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEI-SGRKTLLLIGFMGVFVVTVLL 377 (498)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~ 377 (498)
.+..-..-.++.+........++...++.+...+.-.............+.+++++|. +||-+.+.++..+..++..++
T Consensus 42 il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~l 121 (571)
T KOG1237|consen 42 ILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGL 121 (571)
T ss_pred HHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344566666777777777777777777777788888999999996 589899988888888887777
Q ss_pred HHHHHHhhh--------------h---hhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCCh----hh--HHHHHHHH
Q psy12242 378 TIVMQFVEI--------------F---VMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSA----RP--LATSLAVS 434 (498)
Q Consensus 378 ~~~~~~~~~--------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~----~~--~~~g~~~~ 434 (498)
......+.. . ......+............+.-|....+-+|.++... +. .-+.....
T Consensus 122 t~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf 201 (571)
T KOG1237|consen 122 TLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYF 201 (571)
T ss_pred HHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHH
Confidence 665443311 0 1111222222222333444555667777788887322 22 44455555
Q ss_pred HHHHHHHHHHHhHHHHHHhhhh-HHHHHHHHHHHHHH
Q psy12242 435 INWTANFIVGLGFLPIESIIHG-YVFTIFAVLQAMFV 470 (498)
Q Consensus 435 ~~~~~~~~~~~~~~~l~~~~g~-~~~~~~~~~~~~~~ 470 (498)
..++|..++..+..++.+..+| ..+.+..++.+++.
T Consensus 202 ~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai 238 (571)
T KOG1237|consen 202 SQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAI 238 (571)
T ss_pred HHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHH
Confidence 5667777777777777777765 23344444433333
|
|
| >KOG4332|consensus | Back alignment and domain information |
|---|
Probab=91.28 E-value=2.4 Score=37.51 Aligned_cols=134 Identities=13% Similarity=0.061 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhccc--hhhHHHHHHHHHHHHHHhh----hhccchhHHHHHHHHHHHhhhhhhhcc
Q psy12242 90 AVAVSIFCAGGIIGGAATGYVAERFGRK--GGLLINNVFVVLAALLQGF----SKAFSSYEMIILGRFLIGINSGLNAGL 163 (498)
Q Consensus 90 g~~~s~~~~~~~~~~~~~g~l~dr~Grr--~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~r~l~G~~~g~~~~~ 163 (498)
|.+.+.++++..+|+-+..++..|-.+| ..+.+...+.++...+..+ +|...+...-+++..+.-.+.|..+|.
T Consensus 285 GfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwPS 364 (454)
T KOG4332|consen 285 GFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWPS 364 (454)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcchH
Confidence 8999999999999999999998887665 3455554444444333322 222222333355566666778889999
Q ss_pred hhhhhhccCcccchhhhHhHHHHHHHHHHHHHHHHhcCcccCCCCchhHHHHhhhHHHHHHH
Q psy12242 164 APMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLLGTADGWPLLLAFTLVPGIYQM 225 (498)
Q Consensus 164 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~ 225 (498)
...+=+++.|++.|...+.++..-.++=..++-. ..-.-....+=|..|-+......++.
T Consensus 365 imkmRsqyIPEearstimNfFRvPLnifvClvLy--nlh~~~~p~~tr~mf~icS~~~~~a~ 424 (454)
T KOG4332|consen 365 IMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLY--NLHVDAFPTTTRNMFGICSAFLFVAS 424 (454)
T ss_pred HHHHHHhhCCHHHHhhhhhheechhhHhhhhhhe--ecccccCccccchhhhhhHHHHHHHH
Confidence 9999999999999999998877544432222111 00011122345788877766555543
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=88.91 E-value=24 Score=34.44 Aligned_cols=125 Identities=11% Similarity=-0.003 Sum_probs=76.3
Q ss_pred CchhHHHHHHHHHH-HHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhh---------------hh---
Q psy12242 328 SDTAAQWATLGMGT-MNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEI---------------FV--- 388 (498)
Q Consensus 328 ~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~--- 388 (498)
+++....+=+..-+ +.++..++..++.+++.+.++............+++++......+ .+
T Consensus 59 gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l 138 (509)
T COG3202 59 GAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFL 138 (509)
T ss_pred cchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccc
Confidence 34444444344433 566677788888999999888776666666666666555431100 00
Q ss_pred -------hHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy12242 389 -------MSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIES 452 (498)
Q Consensus 389 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~ 452 (498)
..|...+...+.-...+....-+-+..++|....++..+-+++.+...+++..+++.+..++.+
T Consensus 139 ~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 139 KWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred eeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 0011111111111111222223556788899988989999999999999999999888888766
|
|
| >KOG3574|consensus | Back alignment and domain information |
|---|
Probab=88.19 E-value=5.7 Score=37.27 Aligned_cols=68 Identities=10% Similarity=0.121 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHHhhchHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhh-----ccCCceehhhh
Q psy12242 295 PLFISMTVMVAQQLSGINAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVE-----ISGRKTLLLIG 366 (498)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-----r~g~~~~~~~~ 366 (498)
.+....+.+..+. .-+.... ..|++++..|.|-...+.+.....= .--.++...+.| |+||||..++-
T Consensus 32 ~illLl~LYllQG-iP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay~P--~sLKllWaPiVDs~y~k~~GrrksWvvp 104 (510)
T KOG3574|consen 32 SILLLLFLYLLQG-IPLGLIG-AIPLLLQAKGVSYTSQAIFSFAYWP--FSLKLLWAPIVDSVYSKRFGRRKSWVVP 104 (510)
T ss_pred hHHHHHHHHHHcC-CchhHhh-hhHHHhcCCCcchhhhhhhhhhhhH--HHHHHHHHhhhHHHHHHhhccccceeee
Confidence 3444444554433 3333444 7788888778776665544332211 112344555666 99999876543
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=87.27 E-value=2.3 Score=37.51 Aligned_cols=112 Identities=18% Similarity=0.182 Sum_probs=61.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-hccchhhH----HHHHHHHHHHHHHhh-hhc-cchhHHHHHHHHHHH
Q psy12242 82 QSQVTMIFAVAVSIFCAGGIIGGAATGYVAER-FGRKGGLL----INNVFVVLAALLQGF-SKA-FSSYEMIILGRFLIG 154 (498)
Q Consensus 82 ~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~----~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~r~l~G 154 (498)
.++.........-++..|..+|.+..|++... +-||+.+. .+.+++.+..+.... .+. ..++..+++.-++.|
T Consensus 136 ~~~~~~~~~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G 215 (267)
T PF07672_consen 136 GGGFNWIIPIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAG 215 (267)
T ss_pred ccccchhhHHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHH
Confidence 33443444666677788888888888888764 55665543 334444444444211 110 113667888888888
Q ss_pred hhhhhhhcchhhhhhcc--CcccchhhhHhHHHHHHHHHHHHHH
Q psy12242 155 INSGLNAGLAPMYLAEI--SPVHLRGAVGTVYQLVITISIVISQ 196 (498)
Q Consensus 155 ~~~g~~~~~~~~~i~~~--~~~~~r~~~~~~~~~~~~~g~~~~~ 196 (498)
+..=+.+++....=.|. ..|++-|..+ ...+++|.++-.
T Consensus 216 ~f~WgiQ~ViL~lPhEyK~~~pk~ig~~F---g~iWGfGY~~yT 256 (267)
T PF07672_consen 216 FFLWGIQGVILNLPHEYKGYNPKKIGIQF---GLIWGFGYIFYT 256 (267)
T ss_pred HHHHhhhHHHhcChhhhcCCCcceehhHH---HHHHHHHHHHHH
Confidence 87655665554333333 2234444444 444555555443
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=86.54 E-value=23 Score=34.65 Aligned_cols=31 Identities=16% Similarity=0.139 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHhhhhhhhccCCceehhhhhH
Q psy12242 338 GMGTMNVVMTLVSLVLVEISGRKTLLLIGFM 368 (498)
Q Consensus 338 ~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~ 368 (498)
...+..++..+....+..|+..+.-+..+.+
T Consensus 53 ~~~v~~l~~~~~~~~~~~~i~~~~Ri~~~lv 83 (437)
T TIGR00939 53 ASQLPSLLFNSLNLFLIFRIPVTVRLLGGLV 83 (437)
T ss_pred HHHHHHHHHHHHHHHHhhccCccchhHHHHH
Confidence 4444455555555566666655433444433
|
|
| >KOG1479|consensus | Back alignment and domain information |
|---|
Probab=85.27 E-value=27 Score=33.29 Aligned_cols=51 Identities=14% Similarity=-0.052 Sum_probs=25.5
Q ss_pred HHHHHHhhchHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhh
Q psy12242 302 VMVAQQLSGINAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVL 353 (498)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l 353 (498)
.........++.+.+-.+++.+.+-.... .-.+.....+...+..++...+
T Consensus 25 llGiG~LlpWN~fiTa~~y~~~~~~~~~~-~~~F~~~~~~~a~i~~ll~~~~ 75 (406)
T KOG1479|consen 25 LLGIGTLLPWNMFITASDYYYYRFPGYHN-SKNFTSSYTLAAQIPLLLFNLL 75 (406)
T ss_pred HHhcccccchHhhhccHHHHHhhcCCCch-HHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444567777777887766633333 3333444444444444444333
|
|
| >KOG3880|consensus | Back alignment and domain information |
|---|
Probab=83.71 E-value=3.8 Score=37.11 Aligned_cols=74 Identities=15% Similarity=0.139 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHHHHHHHHHHHHHHHhc
Q psy12242 124 NVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGL 200 (498)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~ 200 (498)
.+++.+...+..+. ++++..++.-+.-|+-.|..++...--+.+-.++++|-.+++...++-++|..++.++++
T Consensus 326 Nl~ff~~~a~~~ft---psi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lal 399 (409)
T KOG3880|consen 326 NLLFFLLQAWYWFT---PSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLAL 399 (409)
T ss_pred HHHHHHHHHHHHhc---cHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhc
Confidence 34455555566666 899999999999999888888888888888888899999999999999999999998654
|
|
| >KOG2601|consensus | Back alignment and domain information |
|---|
Probab=80.62 E-value=21 Score=33.59 Aligned_cols=34 Identities=15% Similarity=0.139 Sum_probs=26.3
Q ss_pred hhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHH
Q psy12242 411 IPWFLVSELFSQSARPLATSLAVSINWTANFIVG 444 (498)
Q Consensus 411 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~ 444 (498)
...-...|..|++.|..+.|+.|..+..-...--
T Consensus 406 AVtqimQe~VpEseR~vv~gvqnsL~~~ldll~~ 439 (503)
T KOG2601|consen 406 AVTQIMQETVPESERCVVFGVQNSLNSALDLLKD 439 (503)
T ss_pred HHHHHHHHhcchhhhhhhHhHHHHHHHHHHHHHH
Confidence 3344667999999999999999998876655443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 498 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 1e-31 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 498 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-05 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 3e-04 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.2 bits (111), Expect = 1e-05
Identities = 42/297 (14%), Positives = 83/297 (27%), Gaps = 67/297 (22%)
Query: 238 ILLSKGQELEAQRAL--------SWLRGTIEVHDEMDEM-RAEYES--------IKLIPK 280
LLSK +E+ Q+ + +L I+ M Y ++ K
Sbjct: 70 TLLSKQEEM-VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128
Query: 281 --VSLREMFTNA-----QLRIPLFIS---M-----TVMVAQQLSGINAVIYFSTKIFTMA 325
VS + + +LR + + T + KIF
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF--- 185
Query: 326 QLSDTAAQWATLG-MGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFV 384
W L + V+ ++ +L +I T + + +I +
Sbjct: 186 --------WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH--SIQAELR 235
Query: 385 EIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVG 444
+ + L+++ V F+ S + L T+ + +F+
Sbjct: 236 RLLKSKPYENCLLVLLNV-------QNAKAW--NAFNLSCKILLTTRFKQV---TDFLSA 283
Query: 445 LGFLPIESIIHGYVFTIFAVLQAMFVLFI---YKKVPETKNKTQ----EEIAAMFRQ 494
I H T V + + ++ + +P T IA R
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKS-LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD 339
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Length = 438 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 3e-04
Identities = 43/320 (13%), Positives = 95/320 (29%), Gaps = 21/320 (6%)
Query: 94 SIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLI 153
S F G I G + ++ K G++ L A L + +Y + ++G F+I
Sbjct: 68 SAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFII 127
Query: 154 GI-NSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLLGTADGWPL 212
L P ++ + P + Q + +I+ + G +L
Sbjct: 128 AAGLGCLETAANP-FVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQ 186
Query: 213 LLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDEMDEMRAEY 272
+ + P S + + + L L + +
Sbjct: 187 DVLDKMSPEQLSAYKHSL-VLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHS----- 240
Query: 273 ESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTMAQLSDTAA 332
++ + SL + R + + AQ + Y +I M + AA
Sbjct: 241 DAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMT--AGFAA 298
Query: 333 QWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIF 392
+ T M + + ++ + K L + + + + + +
Sbjct: 299 NYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGH------VGLI 352
Query: 393 CIILV-----IMFVVFFAVG 407
+ L I + F++G
Sbjct: 353 ALTLCSAFMSIQYPTIFSLG 372
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 498 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 100.0 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 100.0 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.95 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.94 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.41 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.39 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.37 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.36 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.33 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.2 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 98.95 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-48 Score=385.69 Aligned_cols=449 Identities=26% Similarity=0.466 Sum_probs=356.9
Q ss_pred chHHHHHHHHHhhhhhccccccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHH
Q psy12242 26 NGKLAFAISASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGA 105 (498)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~ 105 (498)
+++.+.+.++++++ .+++|||.++++.++|.++++++...+ .+++..+.+.|++.+++.+|..+|++
T Consensus 7 ~~y~~~i~~~a~lg-~~~~Gyd~~~i~~~~~~~~~~~~~~~~------------~~~~~~~~~~g~~~s~~~~G~~iG~~ 73 (491)
T 4gc0_A 7 SSYIFSITLVATLG-GLLFGYDTAVISGTVESLNTVFVAPQN------------LSESAANSLLGFCVASALIGCIIGGA 73 (491)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHGGGGTHHHHHHHHTGGGC------------CCHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred hHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCC------------CCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777888888 799999999999999999988863210 34455566779999999999999999
Q ss_pred hHHHHHHhhccchhhHHHHHHHHHHHHHHhhhh---------------ccchhHHHHHHHHHHHhhhhhhhcchhhhhhc
Q psy12242 106 ATGYVAERFGRKGGLLINNVFVVLAALLQGFSK---------------AFSSYEMIILGRFLIGINSGLNAGLAPMYLAE 170 (498)
Q Consensus 106 ~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~ 170 (498)
++|+++||+|||++++++.+++.++++++++++ ..+|++.++++|+++|++.|...+....+++|
T Consensus 74 ~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E 153 (491)
T 4gc0_A 74 LGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAE 153 (491)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998521 12899999999999999999999999999999
Q ss_pred cCcccchhhhHhHHHHHHHHHHHHHHHHhcCcc------cCCCCchhHHHHhhhHHHHHHHhhcccccCChhhHHHhcCC
Q psy12242 171 ISPVHLRGAVGTVYQLVITISIVISQILGLGGL------LGTADGWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQ 244 (498)
Q Consensus 171 ~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~------~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~l~~~~~~ 244 (498)
+.|+++|++..++.+.+..+|.++++.++.... ......||+.+.+..+..++.++..+++||||+|+ ..+++
T Consensus 154 ~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L-~~~~~ 232 (491)
T 4gc0_A 154 LAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWL-MSRGK 232 (491)
T ss_dssp TSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHH-HHTTC
T ss_pred hCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHH-HHcCc
Confidence 999999999999999999999999888653211 12345789999999999888888889999999999 89999
Q ss_pred HHHHHHHHHhhcCCchhHHHHHHHHHhHHhhhcCCCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHHhh
Q psy12242 245 ELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTM 324 (498)
Q Consensus 245 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (498)
++++++.+++...+....++..+.++..+..++.. .....++ .++.........+.++.+.....+|.+.+.+.
T Consensus 233 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (491)
T 4gc0_A 233 QEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTG--GRLLMFG----VGVIVIGVMLSIFQQFVGINVVLYYAPEVFKT 306 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--THHHHSC----CTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhh--hHHHHhc----ccHHHHHHHHHHHHHHhhhhHHHhcchHHHHh
Confidence 99999988887665444433333332222222111 1112222 22455666667777788888999999999999
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q psy12242 325 AQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFF 404 (498)
Q Consensus 325 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (498)
.+.+...........++..+++.++++++.||+|||+.+..+...+.++++.+........ .....+....++..++
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~ 383 (491)
T 4gc0_A 307 LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQA---PGIVALLSMLFYVAAF 383 (491)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTC---CHHHHHHHHHHHHHHH
T ss_pred cCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhccc---chHHHHHHHHHHHHHH
Confidence 8988888888888889999999999999999999999999888888887777665443322 2333444455556667
Q ss_pred hcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhh------h-hHHHHHHHHHHHHHHHHHHHhc
Q psy12242 405 AVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESII------H-GYVFTIFAVLQAMFVLFIYKKV 477 (498)
Q Consensus 405 ~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~------g-~~~~~~~~~~~~~~~~~~~~~~ 477 (498)
..+..++.+.+.+|++|++.|+++.|+.+..+++++++++.+.+.+.+.. + ...+++++++++++.++.+++.
T Consensus 384 ~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~ 463 (491)
T 4gc0_A 384 AMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFV 463 (491)
T ss_dssp HTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhee
Confidence 77788899999999999999999999999999999999999988775432 1 2467888899999999999999
Q ss_pred cCCCCCCHHHHHHHHHhhhc
Q psy12242 478 PETKNKTQEEIAAMFRQISY 497 (498)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~ 497 (498)
||||+|++||+|+.+|++++
T Consensus 464 PETkg~tLeei~~~f~~~~~ 483 (491)
T 4gc0_A 464 PETKGKTLEELEALWEPETK 483 (491)
T ss_dssp CCCTTCCHHHHGGGTC----
T ss_pred cCCCCCCHHHHHHHhCCCCc
Confidence 99999999999988766543
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-37 Score=297.98 Aligned_cols=352 Identities=11% Similarity=0.043 Sum_probs=263.0
Q ss_pred HHHHHhhhhhccccccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy12242 32 AISASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATGYVA 111 (498)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~ 111 (498)
....+++. .+..+++....++..|.+.++++ .++.+. |++.+++.+++.++++++|+++
T Consensus 27 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g----------------~s~~~~----g~~~~~~~~~~~i~~~~~G~l~ 85 (438)
T 3o7q_A 27 PFALLCSL-FFLWAVANNLNDILLPQFQQAFT----------------LTNFQA----GLIQSAFYFGYFIIPIPAGILM 85 (438)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHSC----------------CCSHHH----HHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHhHHHHHHHHHHHcC----------------CCHHHH----HHHHHHHHHHHHHHHHhHHHHH
Confidence 34444555 56677887788888899999888 888888 9999999999999999999999
Q ss_pred HhhccchhhHHHHHHHHHHHHHH---hhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHHHHH
Q psy12242 112 ERFGRKGGLLINNVFVVLAALLQ---GFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVI 188 (498)
Q Consensus 112 dr~Grr~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~ 188 (498)
||+|||++++++.++.+++.+++ +++ ++++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+.
T Consensus 86 dr~g~r~~l~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 162 (438)
T 3o7q_A 86 KKLSYKAGIITGLFLYALGAALFWPAAEI---MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFN 162 (438)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHH
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHhcccc---ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHH
Confidence 99999999999999999999999 777 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcccC-CCCc-------------------------hhHHHHhhhHHHHHHHhhcc--cccCChhhHHH
Q psy12242 189 TISIVISQILGLGGLLG-TADG-------------------------WPLLLAFTLVPGIYQMITLP--FCPESPKYILL 240 (498)
Q Consensus 189 ~~g~~~~~~i~~~~~~~-~~~~-------------------------wr~~f~~~~~~~~~~~~~~~--~~~e~p~~l~~ 240 (498)
++|.+++++++ +.+. +..+ ||+.|++.++..++..+..+ ..||+++.
T Consensus 163 ~~g~~~g~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--- 237 (438)
T 3o7q_A 163 SFGAIIAVVFG--QSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD--- 237 (438)
T ss_dssp HHHHHHHHHHT--THHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT---
T ss_pred HHHHHHHHHHH--HHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc---
Confidence 99999999953 3444 3333 99999877665554443332 34655421
Q ss_pred hcCCHHHHHHHHHhhcCCchhHHHHHHHHHhHHhhhcCCCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHH
Q psy12242 241 SKGQELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTK 320 (498)
Q Consensus 241 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (498)
++++ ++++..+.+++++++++.++...+..... ... ......+.|.
T Consensus 238 -~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~ 283 (438)
T 3o7q_A 238 -NHSD----------------------------AKQGSFSASLSRLARIRHWRWAVLAQFCY----VGA-QTACWSYLIR 283 (438)
T ss_dssp -CCCC----------------------------SSTTSHHHHHHHHTTCSHHHHHHHHHHHH----HHH-HHHHHHHHHH
T ss_pred -cccc----------------------------ccccchhhhHHHHHhChHHHHHHHHHHHH----HHH-HHHHHHHHHH
Confidence 0000 00111123556777777554332222221 111 2334444454
Q ss_pred H-Hhh-cCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q psy12242 321 I-FTM-AQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVI 398 (498)
Q Consensus 321 ~-~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (498)
+ .++ +|.+..+++.......++.+++.++.+++.||++||+.+..+..+..++.+.+.... ........
T Consensus 284 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~- 354 (438)
T 3o7q_A 284 YAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAG--------GHVGLIAL- 354 (438)
T ss_dssp HHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCC--------HHHHHHHH-
T ss_pred HhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcC--------CcHHHHHH-
Confidence 4 554 499999999999999999999999999999999999998888777766655544321 11122222
Q ss_pred HHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhh-hH
Q psy12242 399 MFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIH-GY 457 (498)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g-~~ 457 (498)
...+++.....+....+..|.+|++ ++++.++.. ...++..++|.+.|.+.+..+ +.
T Consensus 355 ~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~ 412 (438)
T 3o7q_A 355 TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIP 412 (438)
T ss_dssp HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSG
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchH
Confidence 2233334445577888888999976 888888877 677999999999999999988 53
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-38 Score=308.65 Aligned_cols=397 Identities=13% Similarity=0.061 Sum_probs=277.6
Q ss_pred hHHHHHHHHHhhhhhccccccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHh
Q psy12242 27 GKLAFAISASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAA 106 (498)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~ 106 (498)
+.++......+++ .+..+++...++...|.+.+++ . +..+. |++.+++.++..+++++
T Consensus 24 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~----------------s~~~~----g~~~~~~~~~~~~~~~~ 81 (451)
T 1pw4_A 24 RLRWQIFLGIFFG-YAAYYLVRKNFALAMPYLVEQG-F----------------SRGDL----GFALSGISIAYGFSKFI 81 (451)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHTSHHHHHHHTTSST-T----------------CSSCH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh-c----------------cHhHH----HHHHHHHHHHHHHHHHh
Confidence 4455566666666 6777777777666666555443 1 44555 99999999999999999
Q ss_pred HHHHHHhhccchhhHHHHHHHHHHHHHHhh----hhccchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHh
Q psy12242 107 TGYVAERFGRKGGLLINNVFVVLAALLQGF----SKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGT 182 (498)
Q Consensus 107 ~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~ 182 (498)
+|+++||+|||++++++.++.+++.+++++ + ++++.++++|+++|++.+...+...+++.|++|+++|+++++
T Consensus 82 ~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~ 158 (451)
T 1pw4_A 82 MGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT---SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVS 158 (451)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHH---SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHH
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcc---ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHH
Confidence 999999999999999999999999999999 8 899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCcccCCCCc-hhHHHHhhhHHHHHHH-hhcccccCChhhHHHhcCCHHHHHHHHHhhcCCch
Q psy12242 183 VYQLVITISIVISQILGLGGLLGTADG-WPLLLAFTLVPGIYQM-ITLPFCPESPKYILLSKGQELEAQRALSWLRGTIE 260 (498)
Q Consensus 183 ~~~~~~~~g~~~~~~i~~~~~~~~~~~-wr~~f~~~~~~~~~~~-~~~~~~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~ 260 (498)
+...+.++|.+++|+++ +.+.+..+ ||+.|++.+++.++.. +..+++||+|+.. +..+.++. ....
T Consensus 159 ~~~~~~~~g~~~g~~~~--~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-------~~~~- 226 (451)
T 1pw4_A 159 VWNCAHNVGGGIPPLLF--LLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSC--GLPPIEEY-------KNDY- 226 (451)
T ss_dssp HHHHHHHHHHTSHHHHH--HHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTT--CCCSCTTT-------CCC--
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhc--CCCChhhh-------cccc-
Confidence 99999999999999954 34445567 9999999887766554 4456688887542 11111100 0000
Q ss_pred hHHHHHHHHHhHHhhhcCCCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHHhh-cCCCchhHHHHHHHH
Q psy12242 261 VHDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTM-AQLSDTAAQWATLGM 339 (498)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~ 339 (498)
++ +.+++.++....++...++.++++.++. .....+... ........+.|.+.++ .|+++.+.+......
T Consensus 227 --~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 297 (451)
T 1pw4_A 227 --PD--DYNEKAEQELTAKQIFMQYVLPNKLLWY----IAIANVFVY-LLRYGILDWSPTYLKEVKHFALDKSSWAYFLY 297 (451)
T ss_dssp ----------------CCTHHHHHHTSSCHHHHH----HHHHHHHHH-HHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHH
T ss_pred --cc--cchhhhhcccccccchHHHHHcCHHHHH----HHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 00 0000000001111111345556554332 222222222 2234455666666655 799999999999999
Q ss_pred HHHHHHHHHhhhhhhhcc--CCceehhhhhHHHH-HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhh
Q psy12242 340 GTMNVVMTLVSLVLVEIS--GRKTLLLIGFMGVF-VVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLV 416 (498)
Q Consensus 340 ~~~~~~~~~~~g~l~dr~--g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (498)
.++.+++.++.+++.||+ +||+.+..+..+.. ++.+.+... . ..............+.......+....+.
T Consensus 298 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 371 (451)
T 1pw4_A 298 EYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN---P---AGNPTVDMICMIVIGFLIYGPVMLIGLHA 371 (451)
T ss_dssp HHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC---C---TTCHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh---c---ccCHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 999999999999999999 99988776665555 333333221 0 01111222222223333333445667788
Q ss_pred cccCCCChhhHHHHHHHHHHHH-HHHHHHHhHHHHHHhhhh-HHHHHHHHHHHHHHHHHHH
Q psy12242 417 SELFSQSARPLATSLAVSINWT-ANFIVGLGFLPIESIIHG-YVFTIFAVLQAMFVLFIYK 475 (498)
Q Consensus 417 ~~~~p~~~~~~~~g~~~~~~~~-~~~~~~~~~~~l~~~~g~-~~~~~~~~~~~~~~~~~~~ 475 (498)
.|.+|++.|+++.|+.+...++ +..++|.+.|.+.+..++ ..+.+.+++.+++.++.+.
T Consensus 372 ~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 372 LELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 999999999999998885 4555566666655555444
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-33 Score=268.59 Aligned_cols=360 Identities=13% Similarity=0.076 Sum_probs=261.0
Q ss_pred HhhhhhccccccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Q psy12242 36 SALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFG 115 (498)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G 115 (498)
.++. .+..+++.....+..|.+.++++ .++.+. |++.+.+.++..++++++|+++||+|
T Consensus 5 ~~~~-~~~~~~~~~~~~~~~~~~~~~~g----------------~s~~~~----g~~~~~~~~~~~~~~~~~g~l~dr~g 63 (375)
T 2gfp_A 5 LVLL-VAVGQMAQTIYIPAIADMARDLN----------------VREGAV----QSVMGAYLLTYGVSQLFYGPISDRVG 63 (375)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHTTSS----------------STTHHH----HHHHHHHHHHHHHHHTTHHHHHTTSC
T ss_pred HHHH-HHHHHHHHHHHhhhhHHHHHHcC----------------CCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444 45566777777777777777766 788887 99999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhHHHHHHHHHHHHH
Q psy12242 116 RKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVIS 195 (498)
Q Consensus 116 rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~ 195 (498)
||+++..+..+..++.++.+++ ++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..++
T Consensus 64 ~r~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 140 (375)
T 2gfp_A 64 RRPVILVGMSIFMLATLVAVTT---SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLA 140 (375)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCcccCCCCchhHHHHhhhHHHHHHHh-hcccccCChhhHHHhcCCHHHHHHHHHhhcCCchhHHHHHHHHHhHHh
Q psy12242 196 QILGLGGLLGTADGWPLLLAFTLVPGIYQMI-TLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDEMDEMRAEYES 274 (498)
Q Consensus 196 ~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (498)
|.++ +.+.+..+||+.|++.++..++..+ ..+++||+|+.. ++
T Consensus 141 ~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~------------------------------ 184 (375)
T 2gfp_A 141 PLIG--GLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVD----AP------------------------------ 184 (375)
T ss_dssp HHHH--HHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTT----CC------------------------------
T ss_pred HHHH--HHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCC----cc------------------------------
Confidence 9954 4777778999999998887776665 556688875321 00
Q ss_pred hhcCCCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHH-hhcCCCchhHHHHHHHHHHHHHHHHHhhhhh
Q psy12242 275 IKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIF-TMAQLSDTAAQWATLGMGTMNVVMTLVSLVL 353 (498)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l 353 (498)
+++.+.++++.+|+|..+...+..... .. .......+.|.+. +..|.++.+.+.......++.+++.++.+++
T Consensus 185 -~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l 258 (375)
T 2gfp_A 185 -RTRLLTSYKTLFGNSGFNCYLLMLIGG----LA-GIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRP 258 (375)
T ss_dssp -CCCTTTCSTHHHHHHHHHHHHHHHHHH----HH-HHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTT
T ss_pred -cccHHHHHHHHhcCcchHHHHHHHHHH----HH-HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011233556677776544332222222 21 2233444444444 4478899999999999999999999999999
Q ss_pred hhccCCceehhhhhHH-HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHH
Q psy12242 354 VEISGRKTLLLIGFMG-VFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLA 432 (498)
Q Consensus 354 ~dr~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~ 432 (498)
.||.+++ ...+... ...+...+....... ...+..... ....+.......+....+..|..| ++|+++.|+.
T Consensus 259 ~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~ 331 (375)
T 2gfp_A 259 NKRFSTL--MWQSVICCLLAGLLMWIPDWFGV---MNVWTLLVP-AALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALV 331 (375)
T ss_dssp TTHHHHH--HHHHHHHHHHTSSSSSHHHHHHH---HHHHHHHHH-HHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHH
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHhhhcc---ccHHHHHHH-HHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHH
Confidence 9999872 2222222 222221111111000 111212122 222223333345777788889998 8899999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHH
Q psy12242 433 VSINWTANFIVGLGFLPIESIIHGYVFTIFAVLQAM 468 (498)
Q Consensus 433 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~ 468 (498)
+...+++..++|.+.+.+.+..++...+...++.++
T Consensus 332 ~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~ 367 (375)
T 2gfp_A 332 GGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLMGLL 367 (375)
T ss_dssp HHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 999999999999999999887666544444443333
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-32 Score=267.47 Aligned_cols=389 Identities=11% Similarity=0.051 Sum_probs=245.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-hccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhh
Q psy12242 80 IEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAER-FGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSG 158 (498)
Q Consensus 80 ~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g 158 (498)
.+..+. |++.+.+.++..++++++|+++|| +|||+++..+.++.+++.++++++ ++++.++++|+++|++.+
T Consensus 51 ~s~~~~----~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~g~~~~ 123 (491)
T 4aps_A 51 ITRATA----ASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALP---FGASALFGSIILIIIGTG 123 (491)
T ss_dssp SCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSC---CSTTHHHHHHHHHHHHHH
T ss_pred CCHHHH----HHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHH
Confidence 677777 999999999999999999999999 899999999999999999999998 999999999999999999
Q ss_pred hhhcchhhhhhccCcccc--hhhhHhHHHHHHHHHHHHHHHHhcCcccCCCCchhHHHHhhhHHHHHHHhhcccc-cCC-
Q psy12242 159 LNAGLAPMYLAEISPVHL--RGAVGTVYQLVITISIVISQILGLGGLLGTADGWPLLLAFTLVPGIYQMITLPFC-PES- 234 (498)
Q Consensus 159 ~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~e~- 234 (498)
...+...+++.|++|+++ |+.++++++.+.++|..++|.++ +.+.+..+||+.|++.++..++..+..++. |+.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~--~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~ 201 (491)
T 4aps_A 124 FLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIV--GAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTL 201 (491)
T ss_dssp HHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHH--HHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 999999999999999988 77888889999999999999954 466667899999999876666555443322 211
Q ss_pred ---hhhHHHhcCCHHHHHHHHHh----------------hcCCchhHHHHHHHH--------HhHHhhhcCCCchhhhHh
Q psy12242 235 ---PKYILLSKGQELEAQRALSW----------------LRGTIEVHDEMDEMR--------AEYESIKLIPKVSLREMF 287 (498)
Q Consensus 235 ---p~~l~~~~~~~~~a~~~~~~----------------~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 287 (498)
.+.. .++.+.++.++..++ ..+..+.+....... .......+.+ ......
T Consensus 202 ~~~~~~~-~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 278 (491)
T 4aps_A 202 DPHYLRP-TDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSV--KVTSTE 278 (491)
T ss_dssp CSCCSCC-SCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC-----------
T ss_pred cccccCC-CCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcc--cccHHH
Confidence 0000 111233333333322 011111100000000 0000000000 000011
Q ss_pred ccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHH-hhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehh--
Q psy12242 288 TNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIF-TMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLL-- 364 (498)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~-- 364 (498)
+++ .. .............. .+.....+.+.+. +..+.+..+.+.......+..+++.++.+++.||++||+...
T Consensus 279 ~~~-~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~ 355 (491)
T 4aps_A 279 HLR-VV-SYIPLFIAAVLFWA-IEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPT 355 (491)
T ss_dssp ----CT-THHHHHHHHHHHHH-HHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHH
T ss_pred HHH-HH-HHHHHHHHHHHHHH-HHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchH
Confidence 111 11 11111111111111 1122223333343 445666567777788888899999999999999999987765
Q ss_pred ---hhhHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHH
Q psy12242 365 ---IGFMGVFVVTVLLTIVMQFVE-IFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTAN 440 (498)
Q Consensus 365 ---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~ 440 (498)
.+..+.+++.+.+........ .............++.+.......+....+..|.+|++.|+++.|+.+....+|.
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~ 435 (491)
T 4aps_A 356 KFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGS 435 (491)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 555555555555444321110 0001122222233333444444557778899999999999999999999999999
Q ss_pred HHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhccCCCCC
Q psy12242 441 FIVGLGFLPIESIIHGYVFTIFAVLQAMFVLFIYKKVPETKNK 483 (498)
Q Consensus 441 ~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (498)
.+++.+.+.+.+......+...++++++..++.+...++.+++
T Consensus 436 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 436 ALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp HHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988776555677777777777776666655555443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.4e-29 Score=240.95 Aligned_cols=355 Identities=10% Similarity=0.029 Sum_probs=214.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhhHHHHHHHHHHHH---HHhhhhccchh-HHHHHHHHHHHh
Q psy12242 80 IEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAAL---LQGFSKAFSSY-EMIILGRFLIGI 155 (498)
Q Consensus 80 ~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~r~l~G~ 155 (498)
.++.+. |++.+.+.+++.++++++|+++||+|||++++++..++.++.. ...++ +.. ..++..+.+.|+
T Consensus 40 ~s~~~~----g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 112 (417)
T 2cfq_A 40 ISKSDT----GIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFG---PLLQYNILVGSIVGGI 112 (417)
T ss_dssp CCTTTS----HHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHH---HHHHTTCCHHHHGGGS
T ss_pred CCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 677787 9999999999999999999999999999999998887755322 12232 211 123455666666
Q ss_pred hhhhhhcchhhhhhccCcc--cchhhhHhHHHHHHHHHHHHHHHHhcCcccCCCCchhHHHHhhhHHHHHHHhhcccccC
Q psy12242 156 NSGLNAGLAPMYLAEISPV--HLRGAVGTVYQLVITISIVISQILGLGGLLGTADGWPLLLAFTLVPGIYQMITLPFCPE 233 (498)
Q Consensus 156 ~~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 233 (498)
+.+...+.....+.++.++ ++|+...+....+.++|..++|.++ +.+.+ .+||+.|++.++..++..+..++.+|
T Consensus 113 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~--~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~ 189 (417)
T 2cfq_A 113 YLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIV--GIMFT-INNQFVFWLGSGCALILAVLLFFAKT 189 (417)
T ss_dssp STTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHH--HHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCC
T ss_pred HHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHH--HHHHH-hchhHHHHHHHHHHHHHHHHHHHcCc
Confidence 6665555555555555543 4556667777677788888888743 24333 47999999877665555544544443
Q ss_pred ChhhHHHhcCCHHHHHHHHHhhcCCchhHHHHHHHHHhHHhhhcCCCchhhhHhccccchhhHHHHHHHHHHHHhhchHH
Q psy12242 234 SPKYILLSKGQELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINA 313 (498)
Q Consensus 234 ~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (498)
+|+. +.++++ .. +++.++....+++++++++.++...+..+.... .+..
T Consensus 190 ~~~~----~~~~~~----------~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 238 (417)
T 2cfq_A 190 DAPS----SATVAN----------AV------------GANHSAFSLKLALELFRQPKLWFLSLYVIGVSC-----TYDV 238 (417)
T ss_dssp CCSC----SSCSSS----------SS------------SSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHH-----HHHH
T ss_pred cccc----cccccc----------cc------------ccccccccHHHHHHHhcCCchhhHHHHHHHHHH-----HHHH
Confidence 3210 000000 00 000000111234566776655433222111111 1122
Q ss_pred HHHhHHHHHhh-cC---CCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhh
Q psy12242 314 VIYFSTKIFTM-AQ---LSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVM 389 (498)
Q Consensus 314 ~~~~~~~~~~~-~g---~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (498)
...+.|.+..+ ++ .+....+.......++.+++.++.+++.||+|||+.+..+..+.++..+.+.+. + .
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~----~---~ 311 (417)
T 2cfq_A 239 FDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA----T---S 311 (417)
T ss_dssp HHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC----C---S
T ss_pred HHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh----c---c
Confidence 22223433332 22 223455677777788889999999999999999998877776666554443221 1 1
Q ss_pred HHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHH-HHHHHHHHHHHHHhHHHHHHhhhh-HHHHHHHHHHH
Q psy12242 390 SIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLA-VSINWTANFIVGLGFLPIESIIHG-YVFTIFAVLQA 467 (498)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~~~~~~~~~~~~l~~~~g~-~~~~~~~~~~~ 467 (498)
.+..+....+. ........+....+..|.+|++.|+++.++. +....+|+.++|.+.|.+.+..++ ..+.+.+++++
T Consensus 312 ~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l 390 (417)
T 2cfq_A 312 ALEVVILKTLH-MFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVAL 390 (417)
T ss_dssp HHHHHHHTTHH-HHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHH
Confidence 11111111111 1111112234467889999999999999994 788889999999999999987775 45566666666
Q ss_pred HHHHHHHHhccCCCCC
Q psy12242 468 MFVLFIYKKVPETKNK 483 (498)
Q Consensus 468 ~~~~~~~~~~~~~~~~ 483 (498)
++.++.+...+|+++.
T Consensus 391 ~~~~~~~~~~~~~~~~ 406 (417)
T 2cfq_A 391 GFTLISVFTLSGPGPL 406 (417)
T ss_dssp HHHHHHTTSSCCSCTT
T ss_pred HHHHHHHhhhcCCCch
Confidence 6666655556665543
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-26 Score=231.08 Aligned_cols=394 Identities=11% Similarity=0.019 Sum_probs=214.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh-ccchhhHHHHHHHHHHHHHHhhhhccc-hhHHHHHHHHHHHhhhh
Q psy12242 81 EQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERF-GRKGGLLINNVFVVLAALLQGFSKAFS-SYEMIILGRFLIGINSG 158 (498)
Q Consensus 81 ~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~r~l~G~~~g 158 (498)
+..+. |++.+++.++..++++++|+++||+ |||+++.++.++.+++.++++++ + +++.+++.|++.|++.+
T Consensus 52 s~~~~----g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~g~~~~ 124 (524)
T 2xut_A 52 RGAVA----KDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF---EHSVQGFYTGLFLIALGSG 124 (524)
T ss_dssp TTTTH----HHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT---SSCHHHHHHHHHHHHHHHH
T ss_pred CHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHHHHhcc
Confidence 55556 9999999999999999999999999 99999999999999999999998 7 99999999999999999
Q ss_pred hhhcchhhhhhccCcccchhhhHhH---HHHHHHHHHHHHHHHhcCcccCCCCchhHHHHhhhHHHHHHHhhcccc-cCC
Q psy12242 159 LNAGLAPMYLAEISPVHLRGAVGTV---YQLVITISIVISQILGLGGLLGTADGWPLLLAFTLVPGIYQMITLPFC-PES 234 (498)
Q Consensus 159 ~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~g~~~~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~e~ 234 (498)
...+...+++.|++|+++|+++.+. ...+.++|..++|. +++.+.+..+||+.|++.++..++..+..++. ++.
T Consensus 125 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~--~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~ 202 (524)
T 2xut_A 125 GIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASL--SMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRY 202 (524)
T ss_dssp TTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHH--TSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSC
T ss_pred ccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999876666 88999999999999 55566667899999999877766655443332 221
Q ss_pred hhhHHHhcCCHHHHHHHH-HhhcCCchhHHH---HHHHHH--------------------------hHHhhhcCCCchhh
Q psy12242 235 PKYILLSKGQELEAQRAL-SWLRGTIEVHDE---MDEMRA--------------------------EYESIKLIPKVSLR 284 (498)
Q Consensus 235 p~~l~~~~~~~~~a~~~~-~~~~~~~~~~~~---~~~~~~--------------------------~~~~~~~~~~~~~~ 284 (498)
++.. .++++..+..+.+ ...++.....+. ...... ..+.+ .+.+++
T Consensus 203 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 278 (524)
T 2xut_A 203 IHMP-PEPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFV---GAGASL 278 (524)
T ss_dssp CCCC---------------------CTTHHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHH---HTGGGT
T ss_pred cccC-CCCccchhHHHHHHHHHhhhhcccCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhccc---ccchhh
Confidence 1000 0000000100000 000110000000 000000 00000 001110
Q ss_pred hHh------c--cccchhhHHHHHHHH---HHHHhhchHHHHHhHHHHHhhcCCCc-hhHHHHHHHHHHHHHHHHHhhhh
Q psy12242 285 EMF------T--NAQLRIPLFISMTVM---VAQQLSGINAVIYFSTKIFTMAQLSD-TAAQWATLGMGTMNVVMTLVSLV 352 (498)
Q Consensus 285 ~~~------~--~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~g~ 352 (498)
++. + ....+++.+...... ..... .+.......+......+.+. ...+.......++.+++.++.++
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (524)
T 2xut_A 279 QLERARKSHPDAAVDGVRSVLRILVLFALVTPFWS-LFDQKASTWILQANDMVKPQWFEPAMMQALNPLLVMLLIPFNNF 357 (524)
T ss_dssp HHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHT-TTSSTTTHHHHHHHHSCCCSSSCHHHHHTTSGGGHHHHGGGTTT
T ss_pred HHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHH-HHhccchhhHHhHHhcCCCeeecHHHHHHHHHHHHHHhHHHHHh
Confidence 000 0 000111111111111 11111 11101111111222222221 13455555555566666666666
Q ss_pred hh----hccCCc----eehhhhhHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCC
Q psy12242 353 LV----EISGRK----TLLLIGFMGVFVVTVLLTIVMQFVE-IFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQS 423 (498)
Q Consensus 353 l~----dr~g~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 423 (498)
+. ||.++| +.+..+..+.+++.+.+........ ........+....++.+.......+....+..|..|++
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~ 437 (524)
T 2xut_A 358 VLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKA 437 (524)
T ss_dssp C------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTT
T ss_pred hhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence 54 444332 2344444444444444332110000 00011111222223333333334567777889999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhh------------hHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHH
Q psy12242 424 ARPLATSLAVSINWTANFIVGLGFLPIESIIH------------GYVFTIFAVLQAMFVLFIYKKVPETKNKTQEEI 488 (498)
Q Consensus 424 ~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (498)
.|++++|+.+....+|+.++|.+.+.+.+..+ ...+++.+++++++.++.+.+.++.++++.++.
T Consensus 438 ~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (524)
T 2xut_A 438 MKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALYARSYQMQDHYRQ 514 (524)
T ss_dssp CCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC--------------
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHhccchhhhh
Confidence 99999999999999999999999998876321 122556666666666665555565555444433
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.8e-12 Score=125.68 Aligned_cols=139 Identities=12% Similarity=-0.000 Sum_probs=111.3
Q ss_pred hHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhH
Q psy12242 311 INAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMS 390 (498)
Q Consensus 311 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (498)
........|.+.+++|.+..+.++..+...++..++.++.|+++||+|||+.+..+..+.+++.++...... ..+
T Consensus 42 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~-----~~~ 116 (438)
T 3o7q_A 42 NNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE-----IMN 116 (438)
T ss_dssp HHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH-----TTC
T ss_pred HHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccc-----ccc
Confidence 345666678888999999999999999999999999999999999999999999999888888777633221 122
Q ss_pred HHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHH-Hhh
Q psy12242 391 IFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIE-SII 454 (498)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~-~~~ 454 (498)
+..+....++.+.......+....++.|.+|+++|+++.++.+....+|..+++.+.+.+. +..
T Consensus 117 ~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~ 181 (438)
T 3o7q_A 117 YTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNV 181 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSS
T ss_pred HHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 2333333344444444455777889999999999999999999999999999999999988 443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.8e-12 Score=122.89 Aligned_cols=163 Identities=15% Similarity=0.082 Sum_probs=124.1
Q ss_pred hHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhH
Q psy12242 311 INAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMS 390 (498)
Q Consensus 311 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (498)
........|.+.+++|.++.+.++..+...++..++.++.|+++||+|||+.+..+..+..++.+...... +
T Consensus 16 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--------~ 87 (375)
T 2gfp_A 16 QTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTS--------S 87 (375)
T ss_dssp HHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHH--------H
T ss_pred HHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhc--------c
Confidence 34445556777788999999999999999999999999999999999999999999888888877776532 2
Q ss_pred HHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhH-HHHHHHHHHHHH
Q psy12242 391 IFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIHGY-VFTIFAVLQAMF 469 (498)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g~~-~~~~~~~~~~~~ 469 (498)
...+....+..+.......+....+..|.+|+++|++++++.+....+|..++|.+.+.+.+..++. .+.+.+++.++.
T Consensus 88 ~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 167 (375)
T 2gfp_A 88 LTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGV 167 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 2223333333444444455777788899999999999999999999999999999999998877763 455555555555
Q ss_pred HHHHHHhccCCC
Q psy12242 470 VLFIYKKVPETK 481 (498)
Q Consensus 470 ~~~~~~~~~~~~ 481 (498)
.+......||++
T Consensus 168 ~~~~~~~~~~~~ 179 (375)
T 2gfp_A 168 TFSMARWMPETR 179 (375)
T ss_dssp HCCCCCSSCCCS
T ss_pred HHHHHHHCcccC
Confidence 444445556654
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.1e-11 Score=120.00 Aligned_cols=169 Identities=12% Similarity=0.057 Sum_probs=120.4
Q ss_pred HHHHHHHHHHhhchHHHHHhHHHHHhh-----cCCCchhHHHHHHHHHHHHHHHHHhhhhhhhc-cCCceehhhhhHHHH
Q psy12242 298 ISMTVMVAQQLSGINAVIYFSTKIFTM-----AQLSDTAAQWATLGMGTMNVVMTLVSLVLVEI-SGRKTLLLIGFMGVF 371 (498)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~ 371 (498)
......+...+..+.......+++.+. +|.+..+.++..+...++..++.++.|+++|| +|||+.+..+..+..
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~ 96 (491)
T 4aps_A 17 TLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIM 96 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 333333333333344445555555566 89999999999999999999999999999999 899999999988888
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCCh--hhHHHHHHHHHHHHHHHHHHHhHHH
Q psy12242 372 VVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSA--RPLATSLAVSINWTANFIVGLGFLP 449 (498)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~~~~~~~~~~~~ 449 (498)
++.+.+.+. .+...+....++.+.......+...+++.|.+|++. |+++.++.+....+|..++|.+.+.
T Consensus 97 ~~~~~~~~~--------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 168 (491)
T 4aps_A 97 LGHIVLALP--------FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGA 168 (491)
T ss_dssp HHHHHHHSC--------CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--------hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHH
Confidence 877766542 111222222333333334445777889999999988 7788888899999999999999999
Q ss_pred HHHhhhh-HHHHHHHHHHHHHHHHHH
Q psy12242 450 IESIIHG-YVFTIFAVLQAMFVLFIY 474 (498)
Q Consensus 450 l~~~~g~-~~~~~~~~~~~~~~~~~~ 474 (498)
+.+..++ ..+.+.++..+++.++..
T Consensus 169 l~~~~g~~~~f~~~~~~~~~~~~~~~ 194 (491)
T 4aps_A 169 AQEAAGYHVAFSLAAIGMFIGLLVYY 194 (491)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9998886 445555444444444433
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=3e-12 Score=124.59 Aligned_cols=165 Identities=13% Similarity=0.059 Sum_probs=126.0
Q ss_pred HHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHH
Q psy12242 312 NAVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSI 391 (498)
Q Consensus 312 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (498)
.......|.+.+++ .+..+.++..+...++..++.++.|+++||+|||+.+..+..+.+++.+...+..... .. +
T Consensus 45 ~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~---~~-~ 119 (451)
T 1pw4_A 45 KNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT---SS-I 119 (451)
T ss_dssp TSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHH---SS-S
T ss_pred HHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcc---cc-H
Confidence 34556677777888 9999999999999999999999999999999999999999988888877776522111 11 1
Q ss_pred HHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhh-h-HHHHHHHHHHHHH
Q psy12242 392 FCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIH-G-YVFTIFAVLQAMF 469 (498)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g-~-~~~~~~~~~~~~~ 469 (498)
..+....++.+.......+...+++.|.+|+++|++++|+.+....+|..++|.+.+.+.+..+ + ..+++.+++.++.
T Consensus 120 ~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~ 199 (451)
T 1pw4_A 120 AVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILV 199 (451)
T ss_dssp SHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 1222233334444444557778899999999999999999999999999999999999888887 6 4566666666666
Q ss_pred HHHHHHhccCCC
Q psy12242 470 VLFIYKKVPETK 481 (498)
Q Consensus 470 ~~~~~~~~~~~~ 481 (498)
.++.++..||++
T Consensus 200 ~~~~~~~~~~~~ 211 (451)
T 1pw4_A 200 ALFAFAMMRDTP 211 (451)
T ss_dssp HHHHHHHCCCSS
T ss_pred HHHHHhhccCCH
Confidence 666666666643
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.8e-11 Score=120.09 Aligned_cols=156 Identities=15% Similarity=0.072 Sum_probs=114.8
Q ss_pred hHHHHHhHHHHHhhcC------CCchhHHHHHHHHHHHHHHHHHhhhhhhhcc-CCceehhhhhHHHHHHHHHHHHHHHH
Q psy12242 311 INAVIYFSTKIFTMAQ------LSDTAAQWATLGMGTMNVVMTLVSLVLVEIS-GRKTLLLIGFMGVFVVTVLLTIVMQF 383 (498)
Q Consensus 311 ~~~~~~~~~~~~~~~g------~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (498)
+.......+++.++.| .++.+.+++.+...++..++.++.|+++||+ |||+.+..+..+..++.+.+.+..
T Consensus 29 ~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~-- 106 (524)
T 2xut_A 29 YGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFE-- 106 (524)
T ss_dssp HHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTS--
T ss_pred HHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhc--
Confidence 3344455555667788 9999999999999999999999999999999 999999888888777776665421
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHH---HHHHHHHHHHHHHHhHHHHHHhhhhH-HH
Q psy12242 384 VEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSL---AVSINWTANFIVGLGFLPIESIIHGY-VF 459 (498)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~---~~~~~~~~~~~~~~~~~~l~~~~g~~-~~ 459 (498)
.....+....++.+.......+...+++.|.+|++.|++..+. .+....+|..++|.+.+.+.+..++. .+
T Consensus 107 -----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f 181 (524)
T 2xut_A 107 -----HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAF 181 (524)
T ss_dssp -----SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHH
T ss_pred -----ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 0222233333444444455567888899999999999776666 88889999999999999999877763 45
Q ss_pred HHHHHHHHHHHHHH
Q psy12242 460 TIFAVLQAMFVLFI 473 (498)
Q Consensus 460 ~~~~~~~~~~~~~~ 473 (498)
.+.+++.++..++.
T Consensus 182 ~~~~~~~~~~~~~~ 195 (524)
T 2xut_A 182 GIPGVLMFVATVFF 195 (524)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55555544444433
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=2.3e-11 Score=116.92 Aligned_cols=142 Identities=11% Similarity=0.064 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhhhh
Q psy12242 89 FAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPMYL 168 (498)
Q Consensus 89 ~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i 168 (498)
.++..++..++..++.++.|+++||+|||+.+..+..+.+++.++.++. ++.+.+++..++.+++.+...+....++
T Consensus 261 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (417)
T 2cfq_A 261 FGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA---TSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC---CSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788888888999999999999999999999999988888887777777 7788888888888888777777778899
Q ss_pred hccCcccchhhhHhH-HHHHHHHHHHHHHHHhcCcccCCCCchhHHHHhhhHHHHHHHhh-cccccCCh
Q psy12242 169 AEISPVHLRGAVGTV-YQLVITISIVISQILGLGGLLGTADGWPLLLAFTLVPGIYQMIT-LPFCPESP 235 (498)
Q Consensus 169 ~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p 235 (498)
.|.+|++.|+++.++ .+....+|..++|.+ .+.+.+..+++..|.+.+++.++..+. ..+.||.+
T Consensus 338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l--~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVL--AGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHH--HHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhh--HHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 999999999999998 477888999999984 346656678888998877776666544 44466654
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=7.3e-09 Score=101.75 Aligned_cols=123 Identities=10% Similarity=-0.092 Sum_probs=90.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhh----------hhhhHHHHHHHHHH
Q psy12242 330 TAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVE----------IFVMSIFCIILVIM 399 (498)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~ 399 (498)
...+++.+...++.++|.++.|+++||+|||+.+.++.+++.++.++.++...... .....+..+++.-+
T Consensus 55 ~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~ 134 (491)
T 4gc0_A 55 SLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRI 134 (491)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHH
Confidence 34567778888999999999999999999999999998888888776653210000 00123334444445
Q ss_pred HHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy12242 400 FVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIES 452 (498)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~ 452 (498)
+.+....+..+....+++|..|++.|++..++.+.....|..+++.+......
T Consensus 135 l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~ 187 (491)
T 4gc0_A 135 IGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIAR 187 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhcc
Confidence 55555555567888899999999999999999998888888887777666554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 498 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 5e-14 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 0.002 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 71.6 bits (174), Expect = 5e-14
Identities = 50/405 (12%), Positives = 118/405 (29%), Gaps = 26/405 (6%)
Query: 89 FAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAF-SSYEMII 147
A+S G V++R + L + L GF SS ++
Sbjct: 61 LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMF 120
Query: 148 LGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLLGTA 207
+ FL G G+ + RG + +V+ + I +L L G+
Sbjct: 121 VLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN 180
Query: 208 DGWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDEMDE 267
D L + + ++P+ L +E + + +
Sbjct: 181 DWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQ------- 233
Query: 268 MRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTMAQ- 326
+++ +++F L L + + ++ +S +
Sbjct: 234 ------------ELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKH 281
Query: 327 LSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEI 386
+ + WA + TL+ + + R G + +VT+ +
Sbjct: 282 FALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN--- 338
Query: 387 FVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLG 446
+ ++ ++ + F GP + EL + A A + +
Sbjct: 339 PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASA 398
Query: 447 FLPIESIIHGY--VFTIFAVLQAMFVLFIYKKVPETKNKTQEEIA 489
+ G+ F + + V+ + + K + ++ +
Sbjct: 399 IVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQ 443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 38.2 bits (87), Expect = 0.002
Identities = 33/388 (8%), Positives = 81/388 (20%), Gaps = 37/388 (9%)
Query: 89 FAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIIL 148
+ + ++ G ++++ G + LL +++ + IL
Sbjct: 45 TGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNIL 104
Query: 149 GRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTVYQLVITISIVISQILGLGGLLGTAD 208
++G A E + + V + +
Sbjct: 105 VGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI 164
Query: 209 GWPLLLAFTLVPGIYQMITLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVHDEMDEM 268
+ + + L F A S
Sbjct: 165 NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSL-------------- 210
Query: 269 RAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIFTMAQLS 328
++ + G++ + F S
Sbjct: 211 ---------------------KLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTS 249
Query: 329 DTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFV 388
A + M + + + IG ++ + V F
Sbjct: 250 FFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA 309
Query: 389 MSIFCIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVG--LG 446
S ++++ +F + ++ F + I L
Sbjct: 310 TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLA 369
Query: 447 FLPIESIIHGYVFTIFAVLQAMFVLFIY 474
ESI + + ++ F L
Sbjct: 370 GNMYESIGFQGAYLVLGLVALGFTLISV 397
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 498 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.96 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.39 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.37 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.6e-38 Score=308.29 Aligned_cols=409 Identities=13% Similarity=0.058 Sum_probs=273.9
Q ss_pred cchHHHHHHHHHhhhhhccccccccccCCcHHHHHHHHHhhhhcccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHH
Q psy12242 25 LNGKLAFAISASALGSSFQHGYNTGVFNAPQKLISEWIVDVLKNRSIADGTVNPVIEQSQVTMIFAVAVSIFCAGGIIGG 104 (498)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~ 104 (498)
.++++|.+...+.++ .+...++...++...|.++| ++ .+++|. |++.+++.+++.+++
T Consensus 19 ~~~~~w~i~~~~~~~-~~~~~~~~~~~~~~~p~~~~-~g----------------~s~~~~----g~~~s~~~~~~~~~~ 76 (447)
T d1pw4a_ 19 YRRLRWQIFLGIFFG-YAAYYLVRKNFALAMPYLVE-QG----------------FSRGDL----GFALSGISIAYGFSK 76 (447)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHTSHHHHHHHTTS-ST----------------TCSSCH----HHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-hC----------------cCHHHH----HHHHHHHHHHHHHHH
Confidence 344567777777777 67777787777777777654 45 788888 999999999999999
Q ss_pred HhHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhc-cchhHHHHHHHHHHHhhhhhhhcchhhhhhccCcccchhhhHhH
Q psy12242 105 AATGYVAERFGRKGGLLINNVFVVLAALLQGFSKA-FSSYEMIILGRFLIGINSGLNAGLAPMYLAEISPVHLRGAVGTV 183 (498)
Q Consensus 105 ~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~ 183 (498)
+++|+++||+|||+++.++.++.+++.+++++++. .++++.+++.|++.|++.+...+...+++.|++|+++|++++++
T Consensus 77 ~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~ 156 (447)
T d1pw4a_ 77 FIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSV 156 (447)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHH
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccc
Confidence 99999999999999999999999999999887632 14788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCcccCCCCchhHHHHhhhHHHHHHH-hhcccccCChhhHHHhcCCHHHHHHHHHhhcCCchhH
Q psy12242 184 YQLVITISIVISQILGLGGLLGTADGWPLLLAFTLVPGIYQM-ITLPFCPESPKYILLSKGQELEAQRALSWLRGTIEVH 262 (498)
Q Consensus 184 ~~~~~~~g~~~~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~-~~~~~~~e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~ 262 (498)
.+.+..+|..+++.++. .......+||+.|++.+++.++.. +.+.+.+|+|+.. ...+.++. ..
T Consensus 157 ~~~~~~~g~~i~~~~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~------------~~ 221 (447)
T d1pw4a_ 157 WNCAHNVGGGIPPLLFL-LGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSC--GLPPIEEY------------KN 221 (447)
T ss_dssp HHHHHHHHHTSHHHHHH-HHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTT--CCCSCTTT------------CC
T ss_pred cccccchhhhhhhhhhh-hHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhc--ccchhhhh------------hh
Confidence 99999999999987532 122334589999988776665554 4445567766432 11111100 00
Q ss_pred HHHHHHHHhHHhhhcCCCchhhhHhccccchhhHHHHHHHHHHHHhhchHHHHHhHHHHH-hhcCCCchhHHHHHHHHHH
Q psy12242 263 DEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGINAVIYFSTKIF-TMAQLSDTAAQWATLGMGT 341 (498)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~ 341 (498)
++.++..++.+++...++...+..++++..+ ......++.... ......+.+.+. +..+.+..+.+.......+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (447)
T d1pw4a_ 222 DYPDDYNEKAEQELTAKQIFMQYVLPNKLLW----YIAIANVFVYLL-RYGILDWSPTYLKEVKHFALDKSSWAYFLYEY 296 (447)
T ss_dssp C-------------CCTHHHHHHTSSCHHHH----HHHHHHHHHHHH-HHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHH
T ss_pred hcccchhhccccccchhhHHHHHHHcCchHH----HHHHHhhhhhhh-hhcchhhhhhhcccccccccchhhhhhhcchh
Confidence 0000001111111111222334445544332 222222222222 233444444444 5678999999999999999
Q ss_pred HHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCccchhhhhhcccCC
Q psy12242 342 MNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFCIILVIMFVVFFAVGPGSIPWFLVSELFS 421 (498)
Q Consensus 342 ~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 421 (498)
..+++.++.+++.||++|++..........+............. ...+.. ....+..++...+..+....+..|.+|
T Consensus 297 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~p 373 (447)
T d1pw4a_ 297 AGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPA--GNPTVD-MICMIVIGFLIYGPVMLIGLHALELAP 373 (447)
T ss_dssp HHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCT--TCHHHH-HHHHHHHHHHHTHHHHHHHHHHHHTSC
T ss_pred hhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhccc--ccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999887655444433333333222111111 112222 222233333334445667778899999
Q ss_pred CChhhHHHHHHHHHHHHH-HHHHHHhHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHhcc
Q psy12242 422 QSARPLATSLAVSINWTA-NFIVGLGFLPIESIIHG-YVFTIFAVLQAMFVLFIYKKVP 478 (498)
Q Consensus 422 ~~~~~~~~g~~~~~~~~~-~~~~~~~~~~l~~~~g~-~~~~~~~~~~~~~~~~~~~~~~ 478 (498)
++.|+++.|+.+.+.+++ ..++|.+.|.+.|..|+ ..+.+.+++++++.++.+...+
T Consensus 374 ~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 432 (447)
T d1pw4a_ 374 KKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI 432 (447)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988874 56688999999999886 4555555555555555554433
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=3.2e-28 Score=232.33 Aligned_cols=362 Identities=10% Similarity=0.007 Sum_probs=227.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhccchhHH----HHHHHHHHHh
Q psy12242 80 IEQSQVTMIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEM----IILGRFLIGI 155 (498)
Q Consensus 80 ~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~r~l~G~ 155 (498)
.++.+. |++.+++.+++.++++++|+++||+||||+++++..+..++..+..+. .+... .++.+.+.+.
T Consensus 40 ~s~~~~----g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 112 (417)
T d1pv7a_ 40 ISKSDT----GIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIF---IFGPLLQYNILVGSIVGGI 112 (417)
T ss_dssp CCHHHH----HHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHH---THHHHHHTTCHHHHHHTTT
T ss_pred CCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHh---hhhhhHHHHHHHHHHHhhh
Confidence 788888 999999999999999999999999999999999999999988888877 44433 3455555555
Q ss_pred hhhhhhcchhhhhhccCcc--cchhhhHhHHHHHHHHHHHHHHHHhcCcccCCCCchhHHHHh-hhHHHHHHHhhccccc
Q psy12242 156 NSGLNAGLAPMYLAEISPV--HLRGAVGTVYQLVITISIVISQILGLGGLLGTADGWPLLLAF-TLVPGIYQMITLPFCP 232 (498)
Q Consensus 156 ~~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~wr~~f~~-~~~~~~~~~~~~~~~~ 232 (498)
+.+...........+..++ +++.+..+........+..+++.++ +.+.+ .+|+..+.. .....+...+..+..+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (417)
T d1pv7a_ 113 YLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIV--GIMFT-INNQFVFWLGSGCALILAVLLFFAKT 189 (417)
T ss_dssp TGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHH--HHHHH-HCHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred cccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccc--ccccc-ccccccccchhhHHHHHHHHHHHHhc
Confidence 5555555555554444433 3445566777777888888888743 24433 345555544 4445555555666677
Q ss_pred CChhhHHHhcCCHHHHHHHHHhhcCCchhHHHHHHHHHhHHhhhcCCCchhhhHhccccchhhHHHHHHHHHHHHhhchH
Q psy12242 233 ESPKYILLSKGQELEAQRALSWLRGTIEVHDEMDEMRAEYESIKLIPKVSLREMFTNAQLRIPLFISMTVMVAQQLSGIN 312 (498)
Q Consensus 233 e~p~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (498)
|+|+. ++++++. .+..+........+..+++..+............ ......
T Consensus 190 ~~~~~----~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 241 (417)
T d1pv7a_ 190 DAPSS----ATVANAV-----------------------GANHSAFSLKLALELFRQPKLWFLSLYVIGVSCT-YDVFDQ 241 (417)
T ss_dssp CSCSS----SCSSHHH-----------------------HSCCCCCCHHHHHHHTTSSHHHHHHHHHHHHHHH-HHHHHH
T ss_pred ccccc----hhhhhhh-----------------------hhhcccccccccccccccccccchhhhhHHHHHH-HHhhhc
Confidence 77532 1111110 0001111111222333333222221222211111 111111
Q ss_pred HHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHH
Q psy12242 313 AVIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIF 392 (498)
Q Consensus 313 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (498)
....+.....+..+.+....+.......++..++..+.+++.||.++|+.+..+..+.++..+.+... ...+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 314 (417)
T d1pv7a_ 242 QFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA-------TSALE 314 (417)
T ss_dssp HHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTC-------CCHHH
T ss_pred cccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccc-------cccch
Confidence 11111111112223445566677778888899999999999999999999988888777776665542 11222
Q ss_pred HHHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHH-HHHHHHHHHHHHhHHHHHHhhhh-HHHHHHHHHHHHHH
Q psy12242 393 CIILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAV-SINWTANFIVGLGFLPIESIIHG-YVFTIFAVLQAMFV 470 (498)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~~~~~~~~~~~~l~~~~g~-~~~~~~~~~~~~~~ 470 (498)
. .....+.+.......+....+..|.+|++.|+++.|+.. ....+|..++|.+.|.+.|..|+ ..+.+.+++.++..
T Consensus 315 ~-~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~ 393 (417)
T d1pv7a_ 315 V-VILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFT 393 (417)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred h-hHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
Confidence 2 222223333333344777788899999999999999864 55678999999999999999986 56777777777777
Q ss_pred HHHHHhccCCCCCCHHH
Q psy12242 471 LFIYKKVPETKNKTQEE 487 (498)
Q Consensus 471 ~~~~~~~~~~~~~~~~~ 487 (498)
++..+..++++..+.++
T Consensus 394 ~~~~~~l~~~~~~~~~r 410 (417)
T d1pv7a_ 394 LISVFTLSGPGPLSLLR 410 (417)
T ss_dssp HHHHHHSCCSSCTTHHH
T ss_pred HHHHHhhcCCCccchhH
Confidence 77777777666555433
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.39 E-value=2.1e-13 Score=130.09 Aligned_cols=162 Identities=14% Similarity=0.064 Sum_probs=120.3
Q ss_pred HHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhhhhhhhccCCceehhhhhHHHHHHHHHHHHHHHHhhhhhhHHHH
Q psy12242 314 VIYFSTKIFTMAQLSDTAAQWATLGMGTMNVVMTLVSLVLVEISGRKTLLLIGFMGVFVVTVLLTIVMQFVEIFVMSIFC 393 (498)
Q Consensus 314 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (498)
+....|++ ++.|+|..+.+++.+...++..++.++.|+++||+|||+.+..+.++.+++.++......... ....
T Consensus 44 ~~~~~p~~-~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 118 (447)
T d1pw4a_ 44 FALAMPYL-VEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATS----SIAV 118 (447)
T ss_dssp HHHHHHHT-TSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHS----SSSH
T ss_pred HHHHHHHH-HHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhh----hHHH
Confidence 34445554 467999999999999999999999999999999999999999998888888777765433221 1222
Q ss_pred HHHHHHHHHHHhcCccchhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhh-h-HHHHHHHHHHHHHHH
Q psy12242 394 IILVIMFVVFFAVGPGSIPWFLVSELFSQSARPLATSLAVSINWTANFIVGLGFLPIESIIH-G-YVFTIFAVLQAMFVL 471 (498)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~g-~-~~~~~~~~~~~~~~~ 471 (498)
.+...+..+.+.....+....++.|.+|+++|++++|+.+....+|..+++.+.+.+.+..+ + ..+++.+.+.++..+
T Consensus 119 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 198 (447)
T d1pw4a_ 119 MFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVAL 198 (447)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHH
Confidence 23333333444344456777888999999999999999999999999999999888777654 3 355566666666666
Q ss_pred HHHHhccCC
Q psy12242 472 FIYKKVPET 480 (498)
Q Consensus 472 ~~~~~~~~~ 480 (498)
+.+.+.+++
T Consensus 199 ~~~~~~~~~ 207 (447)
T d1pw4a_ 199 FAFAMMRDT 207 (447)
T ss_dssp HHHHHCCCS
T ss_pred HHHHhcccc
Confidence 666655543
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.37 E-value=5.4e-14 Score=132.46 Aligned_cols=139 Identities=12% Similarity=0.080 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHhhhhhhhcchhh
Q psy12242 87 MIFAVAVSIFCAGGIIGGAATGYVAERFGRKGGLLINNVFVVLAALLQGFSKAFSSYEMIILGRFLIGINSGLNAGLAPM 166 (498)
Q Consensus 87 ~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~ 166 (498)
...+...+...++..++..+.+++.||+|+|+.+.++.++.+++.++..+. ++.+.+++..++.|++.+...+...+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~g~~~~~~~~~~~~ 335 (417)
T d1pv7a_ 259 RVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA---TSALEVVILKTLHMFEVPFLLVGCFK 335 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTC---CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccc---cccchhhHHHHHHHHHHHHHHHHHHH
Confidence 344788888999999999999999999999999999999999999999998 89999999999999999999999999
Q ss_pred hhhccCcccchhhhHhHH-HHHHHHHHHHHHHHhcCcccCCCCchhHHHHhhhHHHHHHHhhccc
Q psy12242 167 YLAEISPVHLRGAVGTVY-QLVITISIVISQILGLGGLLGTADGWPLLLAFTLVPGIYQMITLPF 230 (498)
Q Consensus 167 ~i~~~~~~~~r~~~~~~~-~~~~~~g~~~~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 230 (498)
++.|.+|+++|+++.++. +....+|..++|+ +.+.+.+..||+..|++.+++.++..+...+
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~--~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 398 (417)
T d1pv7a_ 336 YITSQFEVRFSATIYLVCFCFFKQLAMIFMSV--LAGNMYESIGFQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp HHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHH--HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999975 4567899999998 4457777889999998887776665544433
|