Psyllid ID: psy12247

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------12
MKFQYTEKYSLEERIKIGENLARNHPNCAFVILERSPSALLPQMPRSNYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFADKDGLIYMVYSDVNIFVDE
ccccccccccHHHHHHHHHHHHHcccccEEEEEEEccccccccccccEEEEEcccHHHHHHHHHHHHcccccccEEEEEEEcccccccccHHHHHHHHcccccccEEEEEccccccccc
cccHHHHHccHHHHHHHHHHHHHHcccEEEEEEEEccccccccccccEEEEEcccEHHHHHHHHHHHHccccccccEEEccccccccccEHHHHHHHHHcccccEEEEEEEcccccccc
MKFQYTEKYSLEERIKIGENlarnhpncaFVILerspsallpqmprsnyVVAYEMTVGHFFYLLRKKMALRPEEACFFFIEsmivpadstrmETLSQRFADKDGLIYMVYSdvnifvde
mkfqytekysLEERIKIGENLARNHPNCAFVILERSPSALLPQMPRSNYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQrfadkdgliYMVYSDVNIFVDE
MKFQYTEKYSLEERIKIGENLARNHPNCAFVILERSPSALLPQMPRSNYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFADKDGLIYMVYSDVNIFVDE
**********LEERIKIGENLARNHPNCAFVILERSPSALLPQMPRSNYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFADKDGLIYMVYSDVNIFV**
**FQYTEKYSLEERIKIGENLARNHPNCAFVILERSPSALLPQMPRSNYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFADKDGLIYMVYSDVNIFV**
MKFQYTEKYSLEERIKIGENLARNHPNCAFVILERSPSALLPQMPRSNYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFADKDGLIYMVYSDVNIFVDE
*****TEKYSLEERIKIGENLARNHPNCAFVILERSPSALLPQMPRSNYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFADKDGLIYMVYSDVN*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
ooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MKFQYTEKYSLEERIKIGENLARNHPNCAFVILERSPSALLPQMPRSNYVVAYEMTVGHFFYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFADKDGLIYMVYSDVNIFVDE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query119 2.2.26 [Sep-21-2011]
Q5RF21117 Gamma-aminobutyric acid r yes N/A 0.966 0.982 0.387 3e-20
Q5BIZ2117 Gamma-aminobutyric acid r yes N/A 0.966 0.982 0.387 3e-20
Q6GQ27117 Gamma-aminobutyric acid r N/A N/A 0.966 0.982 0.387 3e-20
Q0VGK0117 Gamma-aminobutyric acid r yes N/A 0.966 0.982 0.387 3e-20
Q8R3R8117 Gamma-aminobutyric acid r yes N/A 0.966 0.982 0.387 3e-20
Q9H0R8117 Gamma-aminobutyric acid r yes N/A 0.966 0.982 0.387 3e-20
P60518117 Gamma-aminobutyric acid r yes N/A 0.966 0.982 0.387 3e-20
Q8HYB6117 Gamma-aminobutyric acid r yes N/A 0.966 0.982 0.387 3e-20
Q9BY60117 Gamma-aminobutyric acid r no N/A 0.966 0.982 0.370 1e-18
P60517117 Gamma-aminobutyric acid r no N/A 0.966 0.982 0.362 4e-18
>sp|Q5RF21|GBRL1_PONAB Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Pongo abelii GN=GABARAPL1 PE=3 SV=1 Back     alignment and function desciption
 Score = 97.1 bits (240), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 45/116 (38%), Positives = 76/116 (65%), Gaps = 1/116 (0%)

Query: 1   MKFQYTEKYSLEERIKIGENLARNHPNCAFVILERSPSALLPQMPRSNYVVAYEMTVGHF 60
           MKFQY E +  E R K GE + + +P+   VI+E++P A +P + +  Y+V  ++TVG F
Sbjct: 1   MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQF 60

Query: 61  FYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFADKDGLIYMVYSDVNIF 116
           ++L+RK++ LRPE+A FFF+ + I P  +T M  L +   ++D  +Y+ YSD +++
Sbjct: 61  YFLIRKRIHLRPEDALFFFVNNTIPPTSAT-MGQLYEDNREEDYFLYVAYSDESVY 115
Increases cell-surface expression of kappa-type opioid receptor through facilitating anterograde intracellular trafficking of the receptor.
Pongo abelii (taxid: 9601)
>sp|Q5BIZ2|GBRL1_XENTR Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Xenopus tropicalis GN=gabarapl1 PE=3 SV=1 Back     alignment and function description
>sp|Q6GQ27|GBRL1_XENLA Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Xenopus laevis GN=gabarapl1 PE=3 SV=1 Back     alignment and function description
>sp|Q0VGK0|GBRL1_RAT Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Rattus norvegicus GN=Gabarapl1 PE=1 SV=1 Back     alignment and function description
>sp|Q8R3R8|GBRL1_MOUSE Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Mus musculus GN=Gabarapl1 PE=2 SV=2 Back     alignment and function description
>sp|Q9H0R8|GBRL1_HUMAN Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Homo sapiens GN=GABARAPL1 PE=1 SV=1 Back     alignment and function description
>sp|P60518|GBRL1_CAVPO Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Cavia porcellus GN=GABARAPL1 PE=2 SV=1 Back     alignment and function description
>sp|Q8HYB6|GBRL1_BOVIN Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Bos taurus GN=GABARAPL1 PE=3 SV=2 Back     alignment and function description
>sp|Q9BY60|GBRL3_HUMAN Gamma-aminobutyric acid receptor-associated protein-like 3 OS=Homo sapiens GN=GABARAPL3 PE=2 SV=1 Back     alignment and function description
>sp|P60517|GBRAP_RAT Gamma-aminobutyric acid receptor-associated protein OS=Rattus norvegicus GN=Gabarap PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query119
353530048116 ATG8-1 LC3-1 like protein [Echinococcus 0.966 0.991 0.413 3e-23
389604114117 autophagy related protein Atg8 [Helicove 0.966 0.982 0.413 8e-21
400073886118 autophagy related protein Atg8 [Galleria 0.966 0.974 0.413 9e-21
114052412117 autophagy related protein Atg8 [Bombyx m 0.966 0.982 0.413 9e-21
301015887125 Chain A, Crystal Structure Of Autophagy- 0.966 0.92 0.413 1e-20
357624756117 Autophagy-Related Protein Atg8 [Danaus p 0.966 0.982 0.405 1e-20
256084674124 gaba(A) receptor-associated protein [Sch 0.966 0.927 0.413 2e-20
242007202117 gamma-aminobutyric acid receptor-associa 0.966 0.982 0.405 4e-20
91085241120 PREDICTED: similar to putative GABA-A re 0.991 0.983 0.394 5e-20
345492299117 PREDICTED: gamma-aminobutyric acid recep 0.966 0.982 0.396 6e-20
>gi|353530048|gb|AER10558.1| ATG8-1 LC3-1 like protein [Echinococcus granulosus] gi|353530052|gb|AER10560.1| ATG8-1 LC3-1 like protein [Echinococcus multilocularis] Back     alignment and taxonomy information
 Score =  112 bits (280), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 82/116 (70%), Gaps = 1/116 (0%)

Query: 1   MKFQYTEKYSLEERIKIGENLARNHPNCAFVILERSPSALLPQMPRSNYVVAYEMTVGHF 60
           MKF Y ++ + EER++ GE +++ +PNC  VI+E+SP A +P + R+ Y+V  ++TVG F
Sbjct: 1   MKFAYKQERTFEERLQEGEKISKRYPNCVPVIVEKSPRANVPNLDRNKYLVPVDLTVGQF 60

Query: 61  FYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFADKDGLIYMVYSDVNIF 116
           +YL+RK++ L+PE+A FFF+++ I P  +T M  L + + D D  +Y+ YSD +++
Sbjct: 61  YYLIRKRIELKPEQALFFFVDNTIPPTSAT-MGALYEEYRDSDKFLYIAYSDESVY 115

Source: Echinococcus granulosus

Species: Echinococcus granulosus

Genus: Echinococcus

Family: Taeniidae

Order: Cyclophyllidea

Class: Cestoda

Phylum: Platyhelminthes

Superkingdom: Eukaryota
>gi|389604114|gb|AFK91514.1| autophagy related protein Atg8 [Helicoverpa armigera] gi|389608575|dbj|BAM17897.1| autophagy-specific gene 8a [Papilio xuthus] Back     alignment and taxonomy information
>gi|400073886|gb|AFP66874.1| autophagy related protein Atg8 [Galleria mellonella] Back     alignment and taxonomy information
>gi|114052412|ref|NP_001040244.1| autophagy related protein Atg8 [Bombyx mori] gi|87248499|gb|ABD36302.1| gaba receptor protein [Bombyx mori] gi|213390050|gb|ACJ46064.1| autophagy related protein Atg8 [Bombyx mori] gi|226424978|gb|ACO53446.1| gamma-aminobutyric acid type A receptor-associated protein [Bombyx mori] Back     alignment and taxonomy information
>gi|301015887|pdb|3M95|A Chain A, Crystal Structure Of Autophagy-Related Protein Atg8 From The Silkworm Bombyx Mori gi|301015888|pdb|3M95|B Chain B, Crystal Structure Of Autophagy-Related Protein Atg8 From The Silkworm Bombyx Mori Back     alignment and taxonomy information
>gi|357624756|gb|EHJ75410.1| Autophagy-Related Protein Atg8 [Danaus plexippus] Back     alignment and taxonomy information
>gi|256084674|ref|XP_002578552.1| gaba(A) receptor-associated protein [Schistosoma mansoni] gi|353228674|emb|CCD74845.1| putative gaba(A) receptor-associated protein [Schistosoma mansoni] Back     alignment and taxonomy information
>gi|242007202|ref|XP_002424431.1| gamma-aminobutyric acid receptor-associated protein, putative [Pediculus humanus corporis] gi|212507831|gb|EEB11693.1| gamma-aminobutyric acid receptor-associated protein, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|91085241|ref|XP_973073.1| PREDICTED: similar to putative GABA-A receptor associated protein [Tribolium castaneum] Back     alignment and taxonomy information
>gi|345492299|ref|XP_003426810.1| PREDICTED: gamma-aminobutyric acid receptor-associated protein-like [Nasonia vitripennis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query119
FB|FBgn0052672121 Atg8a "Autophagy-specific gene 0.966 0.950 0.387 3e-21
UNIPROTKB|Q8HYB6117 GABARAPL1 "Gamma-aminobutyric 0.966 0.982 0.387 3.5e-20
UNIPROTKB|F1P7N8117 GABARAPL1 "Uncharacterized pro 0.966 0.982 0.387 3.5e-20
UNIPROTKB|Q9H0R8117 GABARAPL1 "Gamma-aminobutyric 0.966 0.982 0.387 3.5e-20
MGI|MGI:1914980117 Gabarapl1 "gamma-aminobutyric 0.966 0.982 0.387 3.5e-20
RGD|1596143117 Gabarapl1 "GABA(A) receptor-as 0.966 0.982 0.387 3.5e-20
FB|FBgn0038539158 Atg8b "Autophagy-specific gene 0.966 0.727 0.353 2.5e-19
ZFIN|ZDB-GENE-030131-5174163 gabarapa "GABA(A) receptor-ass 0.983 0.717 0.364 2.5e-19
UNIPROTKB|Q9GJW7117 GABARAP "Gamma-aminobutyric ac 0.966 0.982 0.362 8.3e-19
UNIPROTKB|F1Q2L2117 GABARAP "Uncharacterized prote 0.966 0.982 0.362 8.3e-19
FB|FBgn0052672 Atg8a "Autophagy-specific gene 8a" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 45/116 (38%), Positives = 79/116 (68%)

Query:     1 MKFQYTEKYSLEERIKIGENLARNHPNCAFVILERSPSALLPQMPRSNYVVAYEMTVGHF 60
             MKFQY E+++ E+R   G+ + R +P+   VI+E++P A +  + +  Y+V  ++TVG F
Sbjct:     1 MKFQYKEEHAFEKRRAEGDKIRRKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF 60

Query:    61 FYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFADKDGLIYMVYSDVNIF 116
             ++L+RK++ LRPE+A FFF+ ++I P  +T M +L Q   ++D  +Y+ YSD N++
Sbjct:    61 YFLIRKRIHLRPEDALFFFVNNVIPPTSAT-MGSLYQEHHEEDYFLYIAYSDENVY 115
GO:0016236 "macroautophagy" evidence=IEP
GO:0005776 "autophagic vacuole" evidence=IDA
GO:0031396 "regulation of protein ubiquitination" evidence=IMP
GO:0008340 "determination of adult lifespan" evidence=IMP
GO:0010506 "regulation of autophagy" evidence=IMP
GO:0044753 "amphisome" evidence=IDA
UNIPROTKB|Q8HYB6 GABARAPL1 "Gamma-aminobutyric acid receptor-associated protein-like 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1P7N8 GABARAPL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H0R8 GABARAPL1 "Gamma-aminobutyric acid receptor-associated protein-like 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1914980 Gabarapl1 "gamma-aminobutyric acid (GABA) A receptor-associated protein-like 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1596143 Gabarapl1 "GABA(A) receptor-associated protein like 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
FB|FBgn0038539 Atg8b "Autophagy-specific gene 8b" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-5174 gabarapa "GABA(A) receptor-associated protein a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q9GJW7 GABARAP "Gamma-aminobutyric acid receptor-associated protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1Q2L2 GABARAP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q2UBH5ATG8_ASPORNo assigned EC number0.27960.98310.9915yesN/A
P0CO54ATG8_CRYNJNo assigned EC number0.27110.98310.9285yesN/A
Q8J282ATG8_PODASNo assigned EC number0.27580.96630.9504yesN/A
Q8S925ATG8H_ARATHNo assigned EC number0.36600.93270.9327yesN/A
Q755X2ATG8_ASHGONo assigned EC number0.32170.95790.95yesN/A
Q6FXR8ATG8_CANGANo assigned EC number0.33620.96630.9745yesN/A
Q8HYB6GBRL1_BOVINNo assigned EC number0.38790.96630.9829yesN/A
Q6C794ATG8_YARLINo assigned EC number0.27960.98310.9435yesN/A
O94272ATG8_SCHPONo assigned EC number0.31030.96630.9504yesN/A
Q4WJ27ATG8_ASPFUNo assigned EC number0.27960.98310.9915yesN/A
Q7XPR1ATG8B_ORYSJNo assigned EC number0.30550.89910.8991yesN/A
Q6CMF8ATG8_KLULANo assigned EC number0.31930.99150.9516yesN/A
Q0VGK0GBRL1_RATNo assigned EC number0.38790.96630.9829yesN/A
Q5B2U9ATG8_EMENINo assigned EC number0.27960.98310.9915yesN/A
Q09490LGG1_CAEELNo assigned EC number0.35290.99150.9593yesN/A
A2QPN1ATG8_ASPNCNo assigned EC number0.27960.98310.9915yesN/A
Q5RF21GBRL1_PONABNo assigned EC number0.38790.96630.9829yesN/A
P60518GBRL1_CAVPONo assigned EC number0.38790.96630.9829yesN/A
Q5BIZ2GBRL1_XENTRNo assigned EC number0.38790.96630.9829yesN/A
P38182ATG8_YEASTNo assigned EC number0.33620.96630.9829yesN/A
Q9H0R8GBRL1_HUMANNo assigned EC number0.38790.96630.9829yesN/A
Q8R3R8GBRL1_MOUSENo assigned EC number0.38790.96630.9829yesN/A
A7KAL9ATG8_PENCWNo assigned EC number0.27960.98310.9915yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query119
cd01611112 cd01611, GABARAP, Ubiquitin domain of GABA-recepto 6e-28
pfam02991104 pfam02991, Atg8, Autophagy protein Atg8 ubiquitin 1e-25
cd0161287 cd01612, APG12_C, Ubiquitin-like domain of APG12 0.002
>gnl|CDD|176355 cd01611, GABARAP, Ubiquitin domain of GABA-receptor-associated protein Back     alignment and domain information 
 Score = 98.1 bits (245), Expect = 6e-28
 Identities = 40/112 (35%), Positives = 65/112 (58%), Gaps = 1/112 (0%)

Query: 5   YTEKYSLEERIKIGENLARNHPNCAFVILERSPSALLPQMPRSNYVVAYEMTVGHFFYLL 64
           + E++  E+R    E +   +P+   VI+ER P + LP + +  Y+V  ++TVG F Y++
Sbjct: 1   FKERHPFEKRKAEVERIRAKYPDRIPVIVERYPKSDLPDLDKKKYLVPSDLTVGQFVYII 60

Query: 65  RKKMALRPEEACFFFIESMIVPADSTRMETLSQRFADKDGLIYMVYSDVNIF 116
           RK++ LRPE+A F F+ + + P  S  M  L +   D+DG +YM YS    F
Sbjct: 61  RKRIQLRPEKALFLFVNNSLPPT-SATMSQLYEEHKDEDGFLYMTYSSEETF 111

GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation. Length = 112
>gnl|CDD|111837 pfam02991, Atg8, Autophagy protein Atg8 ubiquitin like Back     alignment and domain information
>gnl|CDD|176356 cd01612, APG12_C, Ubiquitin-like domain of APG12 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 119
KOG1654|consensus116 100.0
cd01611112 GABARAP Ubiquitin domain of GABA-receptor-associat 100.0
PTZ00380121 microtubule-associated protein (MAP); Provisional 100.0
PF02991104 Atg8: Autophagy protein Atg8 ubiquitin like; Inter 100.0
cd0161287 APG12_C Ubiquitin-like domain of APG12. APG12_C Th 100.0
PF0411087 APG12: Ubiquitin-like autophagy protein Apg12 ; In 99.94
KOG3439|consensus116 99.93
PF04106197 APG5: Autophagy protein Apg5 ; InterPro: IPR007239 96.82
PF11816331 DUF3337: Domain of unknown function (DUF3337); Int 95.32
PF1197672 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter 93.59
cd0640680 PB1_P67 A PB1 domain is present in p67 proteins wh 92.95
KOG2660|consensus331 90.89
PF13019162 Telomere_Sde2: Telomere stability and silencing 90.73
cd0019669 UBQ Ubiquitin-like proteins. Ubiquitin homologs; I 88.87
smart0021364 UBQ Ubiquitin homologues. Ubiquitin-mediated prote 88.6
PF0024069 ubiquitin: Ubiquitin family; InterPro: IPR000626 U 87.34
KOG2976|consensus278 82.76
cd0179079 Herp_N Homocysteine-responsive endoplasmic reticul 80.74
PF0367176 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: 80.53
>KOG1654|consensus Back     alignment and domain information 
Probab=100.00  E-value=1e-54  Score=300.66  Aligned_cols=116  Identities=33%  Similarity=0.605  Sum_probs=114.2

Q ss_pred             CCCcccccCCHHHHHHHHHHHHhcCCCcceEEEEcCCCCCCCCCCcceEEecCCcchHhHHHHHHHhhcCCCCCeEEEEE
Q psy12247          1 MKFQYTEKYSLEERIKIGENLARNHPNCAFVILERSPSALLPQMPRSNYVVAYEMTVGHFFYLLRKKMALRPEEACFFFI   80 (119)
Q Consensus         1 m~~~fk~~~~~e~R~~e~~~ir~kyp~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~V   80 (119)
                      |+++||++|||++|+.|+++||+|||+|||||||+++++++|.|||+|||||+++|||||+.+|||||+|+|++|+||||
T Consensus         1 ~~~~FK~~~~fe~R~~E~~~Ir~kyP~riPVIvEk~~~~~lp~lDK~KyLVP~dltvgqfi~iIRkRiqL~~~kA~flfV   80 (116)
T KOG1654|consen    1 MKSSFKERHPFEKRKAEVRRIREKYPDRIPVIVEKAGKSQLPDLDKKKYLVPDDLTVGQFIKIIRKRIQLSPEKAFFLFV   80 (116)
T ss_pred             CcchhhccCCHHHHHHHHHHHHHHCCCCCcEEEEecccccCcccccceeeccccccHHHHHHHHHHHhccChhHeEEEEE
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCeecCCcCchHHHHHhHhcCCCCeEEEEeccccccc
Q psy12247         81 ESMIVPADSTRMETLSQRFADKDGLIYMVYSDVNIFV  117 (119)
Q Consensus        81 n~~~~p~~~~~m~~lY~~~kd~DGfLyl~Ys~~~~fG  117 (119)
                      ||.+ |+++++|++||+.+||+||||||+||+|+|||
T Consensus        81 n~~~-p~ts~~ms~~Ye~~kdeDgFLYm~Ys~e~tfG  116 (116)
T KOG1654|consen   81 NNTS-PPTSATMSALYEEEKDEDGFLYMTYSGENTFG  116 (116)
T ss_pred             cCcC-CcchhhHHHHHHhhcccCcEEEEEeccccccC
Confidence            9999 77799999999999999999999999999999

>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein Back     alignment and domain information
>PTZ00380 microtubule-associated protein (MAP); Provisional Back     alignment and domain information
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules Back     alignment and domain information
>cd01612 APG12_C Ubiquitin-like domain of APG12 Back     alignment and domain information
>PF04110 APG12: Ubiquitin-like autophagy protein Apg12 ; InterPro: IPR007242 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>KOG3439|consensus Back     alignment and domain information
>PF04106 APG5: Autophagy protein Apg5 ; InterPro: IPR007239 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised Back     alignment and domain information
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins Back     alignment and domain information
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis Back     alignment and domain information
>KOG2660|consensus Back     alignment and domain information
>PF13019 Telomere_Sde2: Telomere stability and silencing Back     alignment and domain information
>cd00196 UBQ Ubiquitin-like proteins Back     alignment and domain information
>smart00213 UBQ Ubiquitin homologues Back     alignment and domain information
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade Back     alignment and domain information
>KOG2976|consensus Back     alignment and domain information
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein Back     alignment and domain information
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query119
3m95_A125 Crystal Structure Of Autophagy-Related Protein Atg8 2e-23
2l8j_A119 Gabarapl-1 Nbr1-Lir Complex Structure Length = 119 2e-20
2r2q_A110 Crystal Structure Of Human Gamma-Aminobutyric Acid 1e-19
1kot_A119 Solution Structure Of Human Gaba Receptor Associate 3e-19
1kjt_A119 Crystal Structure Of The Gaba(A) Receptor Associate 3e-19
1gnu_A117 Gaba(a) Receptor Associated Protein Gabarap Length 3e-19
2li5_A117 Nmr Structure Of Atg8-Atg7c30 Complex Length = 117 3e-16
3vh3_B119 Crystal Structure Of Atg7ctd-Atg8 Complex Length = 3e-16
2kwc_A116 The Nmr Structure Of The Autophagy-Related Protein 3e-16
3rui_B118 Crystal Structure Of Atg7c-Atg8 Complex Length = 11 3e-15
2zpn_A119 The Crystal Structure Of Saccharomyces Cerevisiae A 3e-15
2kq7_A119 Solution Structure Of The Autophagy-Related Protein 3e-15
1eo6_A117 Crystal Structure Of Gate-16 Length = 117 2e-13
3h9d_A119 Crystal Structure Of Trypanosoma Brucei Atg8 Length 5e-11
3vvw_B128 Ndp52 In Complex With Lc3c Length = 128 9e-09
4eoy_A128 Plasmodium Falciparum Atg8 In Complex With Plasmodi 1e-07
3eci_A122 Microtubule-Associated Protein 1 Light Chain 3 Alph 1e-07
2k6q_A121 Lc3 P62 Complex Structure Length = 121 2e-06
1ugm_A125 Crystal Structure Of Lc3 Length = 125 2e-06
2z0e_B129 The Crystal Structure Of Human Atg4b- Lc3(1-124) Co 2e-06
1v49_A120 Solution Structure Of Microtubule-Associated Protei 2e-06
2zjd_A130 Crystal Structure Of Lc3-P62 Complex Length = 130 3e-06
>pdb|3M95|A Chain A, Crystal Structure Of Autophagy-Related Protein Atg8 From The Silkworm Bombyx Mori Length = 125 Back     alignment and structure 
Iteration: 1

 Score =  103 bits (258), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 79/116 (68%), Gaps = 1/116 (0%)
Query: 1   MKFQYTEKYSLEERIKIGENLARNHPNCAFVILERSPSALLPQMPRSNYVVAYEMTVGHF 60
           MKFQY E++S E+R   GE + R +P+   VI+E++P A L  + +  Y+V  ++TVG F
Sbjct: 9   MKFQYKEEHSFEKRKAEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQF 68
Query: 61  FYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFADKDGLIYMVYSDVNIF 116
           ++L+RK++ LRPE+A FFF+ ++I P  +T M +L Q   D+D  +Y+ +SD N++
Sbjct: 69  YFLIRKRIHLRPEDALFFFVNNVIPPTSAT-MGSLYQEHHDEDFFLYIAFSDENVY 123
>pdb|2L8J|A Chain A, Gabarapl-1 Nbr1-Lir Complex Structure Length = 119 Back     alignment and structure
>pdb|2R2Q|A Chain A, Crystal Structure Of Human Gamma-Aminobutyric Acid Receptor- Associated Protein-Like 1 (Gabarap1), Isoform Cra_a Length = 110 Back     alignment and structure
>pdb|1KOT|A Chain A, Solution Structure Of Human Gaba Receptor Associated Protein Gabarap Length = 119 Back     alignment and structure
>pdb|1KJT|A Chain A, Crystal Structure Of The Gaba(A) Receptor Associated Protein, Gabarap Length = 119 Back     alignment and structure
>pdb|1GNU|A Chain A, Gaba(a) Receptor Associated Protein Gabarap Length = 117 Back     alignment and structure
>pdb|2LI5|A Chain A, Nmr Structure Of Atg8-Atg7c30 Complex Length = 117 Back     alignment and structure
>pdb|3VH3|B Chain B, Crystal Structure Of Atg7ctd-Atg8 Complex Length = 119 Back     alignment and structure
>pdb|2KWC|A Chain A, The Nmr Structure Of The Autophagy-Related Protein Atg8 Length = 116 Back     alignment and structure
>pdb|3RUI|B Chain B, Crystal Structure Of Atg7c-Atg8 Complex Length = 118 Back     alignment and structure
>pdb|2ZPN|A Chain A, The Crystal Structure Of Saccharomyces Cerevisiae Atg8- Atg19(412-415) Complex Length = 119 Back     alignment and structure
>pdb|2KQ7|A Chain A, Solution Structure Of The Autophagy-Related Protein Atg8 Length = 119 Back     alignment and structure
>pdb|1EO6|A Chain A, Crystal Structure Of Gate-16 Length = 117 Back     alignment and structure
>pdb|3H9D|A Chain A, Crystal Structure Of Trypanosoma Brucei Atg8 Length = 119 Back     alignment and structure
>pdb|3VVW|B Chain B, Ndp52 In Complex With Lc3c Length = 128 Back     alignment and structure
>pdb|4EOY|A Chain A, Plasmodium Falciparum Atg8 In Complex With Plasmodium Falciparum Atg3 Peptide Length = 128 Back     alignment and structure
>pdb|3ECI|A Chain A, Microtubule-Associated Protein 1 Light Chain 3 Alpha Isoform A (Map1alc3) Length = 122 Back     alignment and structure
>pdb|2K6Q|A Chain A, Lc3 P62 Complex Structure Length = 121 Back     alignment and structure
>pdb|1UGM|A Chain A, Crystal Structure Of Lc3 Length = 125 Back     alignment and structure
>pdb|2Z0E|B Chain B, The Crystal Structure Of Human Atg4b- Lc3(1-124) Complex Length = 129 Back     alignment and structure
>pdb|1V49|A Chain A, Solution Structure Of Microtubule-Associated Protein Light Chain-3 Length = 120 Back     alignment and structure
>pdb|2ZJD|A Chain A, Crystal Structure Of Lc3-P62 Complex Length = 130 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query119
3rui_B118 Autophagy-related protein 8; autophagosome formati 3e-25
3m95_A125 Autophagy related protein ATG8; alpha slash beta, 1e-24
1eo6_A117 GATE-16, golgi-associated ATPase enhancer of 16 KD 3e-24
2r2q_A110 Gamma-aminobutyric acid receptor-associated protei 3e-23
2zjd_A130 Microtubule-associated proteins 1A/1B light chain 7e-23
3h9d_A119 ATG8, microtubule-associated protein 1A/1B, light 9e-23
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 2kq7_A 2zpn_A 2kwc_A 2li5_A 3vh3_B 3vh4_B* Length = 118 Back     alignment and structure
 Score = 90.8 bits (225), Expect = 3e-25
 Identities = 39/116 (33%), Positives = 64/116 (55%), Gaps = 1/116 (0%)

Query: 1   MKFQYTEKYSLEERIKIGENLARNHPNCAFVILERSPSALLPQMPRSNYVVAYEMTVGHF 60
           MK  +  +Y  E+R    E +A    N   VI E++  + +P++ +  Y+V  ++TVG F
Sbjct: 3   MKSTFKSEYPFEKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQF 62

Query: 61  FYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFADKDGLIYMVYSDVNIF 116
            Y++RK++ L PE+A F F+   + P  +  M  + Q   DKDG +Y+ YS  N F
Sbjct: 63  VYVIRKRIMLPPEKAIFIFVNDTLPPTAAL-MSAIYQEHKDKDGFLYVTYSGENTF 117
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} Length = 125 Back     alignment and structure
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3 Length = 117 Back     alignment and structure
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A Length = 110 Back     alignment and structure
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A Length = 130 Back     alignment and structure
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} Length = 119 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query119
3rui_B118 Autophagy-related protein 8; autophagosome formati 100.0
3m95_A125 Autophagy related protein ATG8; alpha slash beta, 100.0
3h9d_A119 ATG8, microtubule-associated protein 1A/1B, light 100.0
1eo6_A117 GATE-16, golgi-associated ATPase enhancer of 16 KD 100.0
2zjd_A130 Microtubule-associated proteins 1A/1B light chain 100.0
2r2q_A110 Gamma-aminobutyric acid receptor-associated protei 100.0
4gdk_A91 Ubiquitin-like protein ATG12; protein-protein conj 100.0
1wz3_A96 Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, pla 100.0
3w1s_C91 Ubiquitin-like protein ATG12; ubiquitin fold, E3-l 100.0
2dyo_A297 Autophagy protein 5; ubiquitin-fold, herix-bundle, 95.85
4gdk_B275 Autophagy protein 5; protein-protein conjugate, pr 95.52
3vqi_A274 ATG5; autophagy, E3-like, ubiquitin-fold, PRE-auto 94.97
3goe_A82 DNA repair protein RAD60; SUMO-like domain, sumoyl 93.93
1oey_A83 P67-PHOX, neutrophil cytosol factor 2; immune syst 89.47
1q1o_A98 Cell division control protein 24; PB1 domain, PCCR 86.76
2uyz_B79 Small ubiquitin-related modifier 1; sumoylation, c 86.65
3a4r_A79 Nfatc2-interacting protein; ubiquitin fold, coiled 85.77
1wh3_A87 59 kDa 2'-5'-oligoadenylate synthetase like protei 84.88
1wy8_A89 NP95-like ring finger protein, isoform A; ubiquiti 83.59
1uh6_A100 Ubiquitin-like 5; beta-grAsp fold, structural geno 82.46
3mtn_B85 UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit 82.14
1we7_A115 SF3A1 protein; structural genomics, ubiquitin-like 82.0
1ndd_A76 NEDD8, protein (ubiquitin-like protein NEDD8); pro 81.37
3n3k_B85 Ubiquitin; hydrolase, protease, thiol protease, DU 80.91
1wyw_B97 Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho 80.84
3a9j_A76 Ubiquitin; protein complex, cytoplasm, isopeptide 80.55
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B* Back     alignment and structure
Probab=100.00  E-value=1.5e-55  Score=309.59  Aligned_cols=116  Identities=34%  Similarity=0.641  Sum_probs=111.6

Q ss_pred             CCCcccccCCHHHHHHHHHHHHhcCCCcceEEEEcCCCCCCCCCCcceEEecCCcchHhHHHHHHHhhcCCCCCeEEEEE
Q psy12247          1 MKFQYTEKYSLEERIKIGENLARNHPNCAFVILERSPSALLPQMPRSNYVVAYEMTVGHFFYLLRKKMALRPEEACFFFI   80 (119)
Q Consensus         1 m~~~fk~~~~~e~R~~e~~~ir~kyp~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~V   80 (119)
                      |+++||++||||+|++|+++||+|||++||||||+++++++|.|+++|||||+++||+||+.+||++|+|++++||||||
T Consensus         3 m~~~fK~~~~~e~R~~e~~~ir~kyP~riPVIvE~~~~~~~P~ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~V   82 (118)
T 3rui_B            3 MKSTFKSEYPFEKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFV   82 (118)
T ss_dssp             ---CCTTSSCHHHHHHHHHHHHHHCSSEEEEEEEECTTCCSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEB
T ss_pred             CcchhhccCCHHHHHHHHHHHHHhCCCceEEEEEeCCCCCCCccccceEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEE
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCeecCCcCchHHHHHhHhcCCCCeEEEEeccccccc
Q psy12247         81 ESMIVPADSTRMETLSQRFADKDGLIYMVYSDVNIFV  117 (119)
Q Consensus        81 n~~~~p~~~~~m~~lY~~~kd~DGfLyl~Ys~~~~fG  117 (119)
                      ||. +|++|++||+||++|||+||||||+||+++|||
T Consensus        83 n~~-~p~~~~~m~~lY~~~kdeDGfLyv~Ys~~~~fG  118 (118)
T 3rui_B           83 NDT-LPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG  118 (118)
T ss_dssp             TTB-CCCTTSBHHHHHHHHCCTTSCEEEEEEECCCBC
T ss_pred             CCc-cCCccchHHHHHHHcCCCCCeEEEEEeccccCC
Confidence            996 599999999999999999999999999999999
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3 Back     alignment and structure
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0 Back     alignment and structure
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3 Back     alignment and structure
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A Back     alignment and structure
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A Back     alignment and structure
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A Back     alignment and structure
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7 Back     alignment and structure
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>2dyo_A Autophagy protein 5; ubiquitin-fold, herix-bundle, protein turnover/protein turnover complex; 1.97A {Saccharomyces cerevisiae} PDB: 2dym_A Back     alignment and structure
>4gdk_B Autophagy protein 5; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_B Back     alignment and structure
>3vqi_A ATG5; autophagy, E3-like, ubiquitin-fold, PRE-autoph structure, protein turnover, protein transport; HET: EPE; 2.50A {Kluyveromyces marxianus} Back     alignment and structure
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A* Back     alignment and structure
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2 Back     alignment and structure
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B Back     alignment and structure
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B Back     alignment and structure
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A Back     alignment and structure
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A Back     alignment and structure
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A Back     alignment and structure
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C Back     alignment and structure
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 119
d1eo6a_116 d.15.1.3 (A:) Golgi-associated ATPase enhancer of 7e-28
d3d32a1118 d.15.1.3 (A:1-118) GABA(A) receptor associated pro 4e-27
d2zjda1119 d.15.1.3 (A:2-120) Microtubule-associated proteins 2e-21
>d1eo6a_ d.15.1.3 (A:) Golgi-associated ATPase enhancer of 16 kD, Gate-16 {Cow (Bos taurus) [TaxId: 9913]} Length = 116 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: GABARAP-like
domain: Golgi-associated ATPase enhancer of 16 kD, Gate-16
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 96.3 bits (240), Expect = 7e-28
 Identities = 34/116 (29%), Positives = 64/116 (55%), Gaps = 1/116 (0%)

Query: 1   MKFQYTEKYSLEERIKIGENLARNHPNCAFVILERSPSALLPQMPRSNYVVAYEMTVGHF 60
           MK+ + E +SLE R      +   +P+   VI+E+   + +  + +  Y+V  ++TV  F
Sbjct: 1   MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQF 60

Query: 61  FYLLRKKMALRPEEACFFFIESMIVPADSTRMETLSQRFADKDGLIYMVYSDVNIF 116
            +++RK++ L  E+A F F++  +  +  T M  L ++  D+DG +Y+ YS  N F
Sbjct: 61  MWIIRKRIQLPSEKAIFLFVDKTVPQSSLT-MGQLYEKEKDEDGFLYVAYSGENTF 115
>d3d32a1 d.15.1.3 (A:1-118) GABA(A) receptor associated protein GABARAP {Human (Homo sapiens) [TaxId: 9606]} Length = 118 Back     information, alignment and structure
>d2zjda1 d.15.1.3 (A:2-120) Microtubule-associated proteins 1A/1B light chain 3B {Human (Homo sapiens) [TaxId: 9606]} Length = 119 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query119
d3d32a1118 GABA(A) receptor associated protein GABARAP {Human 100.0
d1eo6a_116 Golgi-associated ATPase enhancer of 16 kD, Gate-16 100.0
d2zjda1119 Microtubule-associated proteins 1A/1B light chain 100.0
d1wz3a184 Autophagy-related protein 12b (APG12b) {Thale cres 99.92
d1euvb_79 SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy 90.11
d1m94a_73 Ubiquitin-like modifier protein hub1 {Baker's yeas 90.1
d1wx8a183 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090] 86.97
d1wh3a_87 2'-5'-oligoadenylate synthetase-like protein, OASL 85.76
d2uyzb177 SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax 85.1
d1wxva181 Bag-family molecular chaperone regulator-1 {Human 84.72
d1yqba184 Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} 84.05
d1v5oa_102 1700011n24rik protein {Mouse (Mus musculus) [TaxId 83.94
d1ttna180 Dendritic cell-derived ubiquitin-like protein {Hum 83.9
d1uh6a_100 Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu 83.56
d1wy8a176 Ubiquitin-like PHD and RING finger domain-containi 83.13
d1j8ca_103 Ubiquitin-like N-terminal domain of PLIC-2 {Human 82.79
d1wjua_100 NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens 81.64
d1z2ma276 Interferon-induced 15 kDa protein {Human (Homo sap 81.59
d1wx9a173 Large proline-rich protein BAT3 {Human (Homo sapie 80.67
>d3d32a1 d.15.1.3 (A:1-118) GABA(A) receptor associated protein GABARAP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: GABARAP-like
domain: GABA(A) receptor associated protein GABARAP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-54  Score=302.77  Aligned_cols=116  Identities=36%  Similarity=0.722  Sum_probs=114.6

Q ss_pred             CCCcccccCCHHHHHHHHHHHHhcCCCcceEEEEcCCCCCCCCCCcceEEecCCcchHhHHHHHHHhhcCCCCCeEEEEE
Q psy12247          1 MKFQYTEKYSLEERIKIGENLARNHPNCAFVILERSPSALLPQMPRSNYVVAYEMTVGHFFYLLRKKMALRPEEACFFFI   80 (119)
Q Consensus         1 m~~~fk~~~~~e~R~~e~~~ir~kyp~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~l~l~~~~slfl~V   80 (119)
                      |+++||++||||+|++|+++|++|||+|||||||+++++++|.|+++|||||.|+||+||+++||++|+|++++||||||
T Consensus         3 m~~~fk~~~s~e~R~~es~~i~~KyPdriPVIve~~~~s~lp~ldk~KflVp~d~tv~qf~~~iRkrl~l~~~~alflfv   82 (118)
T d3d32a1           3 MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFV   82 (118)
T ss_dssp             SCCHHHHHSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCCSCCCSCSEEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEB
T ss_pred             ccchhcccCCHHHHHHHHHHHHHHCCCCceEEEEEcCCCCCcccccceEEecCCccHHHHHHHHHHHhCCCccceEEEEE
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCeecCCcCchHHHHHhHhcCCCCeEEEEeccccccc
Q psy12247         81 ESMIVPADSTRMETLSQRFADKDGLIYMVYSDVNIFV  117 (119)
Q Consensus        81 n~~~~p~~~~~m~~lY~~~kd~DGfLyl~Ys~~~~fG  117 (119)
                      ||++ |+++++||+||++|||+||||||+||+|||||
T Consensus        83 n~~~-~~~~~ti~~lY~~~kdeDGfLYi~Ys~entFG  118 (118)
T d3d32a1          83 NNVI-PPTSATMGQLYQEHHEEDFFLYIAYSDESVYG  118 (118)
T ss_dssp             TTBC-CCTTCBHHHHHHHHCCTTSCEEEEEESCTTCC
T ss_pred             CCcc-cCccccHHHHHHHhCCCCcEEEEEEecccccC
Confidence            9998 88999999999999999999999999999999
>d1eo6a_ d.15.1.3 (A:) Golgi-associated ATPase enhancer of 16 kD, Gate-16 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2zjda1 d.15.1.3 (A:2-120) Microtubule-associated proteins 1A/1B light chain 3B {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wz3a1 d.15.1.7 (A:10-93) Autophagy-related protein 12b (APG12b) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]} Back     information, alignment and structure
>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure