Psyllid ID: psy12265

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70-
Protein Sequence
MEKFTYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR
Secondary Structure (PSIPRED)
cccccccHHHHccccccccccccccccEEcccccHHHHHcccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHEEcccccccccccccccEcccccHHHHEEEEcccccccEcccccccccccccHHHHEccc
Coil and Loop (DISEMBL)
MEKFTYLKVHNrvhlglkpygcevcgrhfrqwgdlkyhkaslhsdvkafqceycgkdfarkyqahsyhqir
Flexible Loop (DISEMBL)
mekftylkvhnrvhlglkpyGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR
Low Complexity Region (SEG)
MEKFTYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR
Disordered region (IsUnstruct)
***FTYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQA*******
Disordered Region (DISOPRED)
*EKFTYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQI*
Disordered Region (DISEMBL)
MEKFTYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQ********
Disordered Region (DISPRO)
***FTYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQ*H******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEKFTYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	71	2.2.26 [Sep-21-2011]
P41696	914	Asparagine-rich zinc fing	yes	N/A	0.788	0.061	0.456	3e-10
P17038	809	Zinc finger protein 43 OS	yes	N/A	0.774	0.067	0.5	7e-10
Q9NYT6	803	Zinc finger protein 226 O	no	N/A	0.887	0.078	0.453	2e-09
Q9UK10	706	Zinc finger protein 225 O	no	N/A	0.887	0.089	0.437	5e-09
Q61116	645	Zinc finger protein 235 O	no	N/A	0.887	0.097	0.421	5e-09
Q504L7	898	Zinc finger protein 574 O	no	N/A	0.760	0.060	0.509	6e-09
Q8BY46	900	Zinc finger protein 574 O	no	N/A	0.760	0.06	0.509	7e-09
Q6ZN55	896	Zinc finger protein 574 O	no	N/A	0.760	0.060	0.509	7e-09
Q5R4P8	895	Zinc finger protein 574 O	no	N/A	0.760	0.060	0.509	7e-09
Q6P2A1	853	Histone-lysine N-methyltr	no	N/A	0.887	0.073	0.453	7e-09

>sp|P41696|AZF1_YEAST Asparagine-rich zinc finger protein AZF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AZF1 PE=1 SV=1

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 39/57 (68%), Gaps = 1/57 (1%)

Query: 5   TYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARK 61
           T+L+VH R H+G KP+ C+ CG+ F Q G+L+ H+  LH+  K + C+ C K F+RK
Sbjct: 606 THLEVHVRSHIGYKPFVCDYCGKRFTQGGNLRTHE-RLHTGEKPYSCDICDKKFSRK 661

Potential transcription factor; suppressor for a mitochondrial RNA polymerase mutant.
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P17038|ZNF43_HUMAN Zinc finger protein 43 OS=Homo sapiens GN=ZNF43 PE=2 SV=4

 Score = 62.8 bits (151), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 28/56 (50%), Positives = 38/56 (67%), Gaps = 1/56 (1%)

Query: 5   TYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFAR 60
           + L  HNR+H G KPY CEVCG+ F Q+ +L  HK  +H+  K ++CE CGK F+R
Sbjct: 439 STLTKHNRIHTGEKPYKCEVCGKAFNQFSNLTTHK-RIHTAEKPYKCEECGKAFSR 493

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q9NYT6|ZN226_HUMAN Zinc finger protein 226 OS=Homo sapiens GN=ZNF226 PE=1 SV=2

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 40/64 (62%), Gaps = 1/64 (1%)

Query: 7   LKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHS 66
           LK+H R+H G KPY CE CG+ FRQ  +L  H+  +HS  K F+CE CGK F R     +
Sbjct: 602 LKIHCRIHTGEKPYNCEECGKVFRQASNLLAHQ-RVHSGEKPFKCEECGKSFGRSAHLQA 660

Query: 67  YHQI 70
           + ++
Sbjct: 661 HQKV 664

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q9UK10|ZN225_HUMAN Zinc finger protein 225 OS=Homo sapiens GN=ZNF225 PE=2 SV=2

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 38/64 (59%), Gaps = 1/64 (1%)

Query: 7   LKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHS 66
           L +H RVH G +PY C+ CG+ F +   +  HK  LH D K F+CE CGK F    Q HS
Sbjct: 555 LDMHQRVHTGERPYNCKECGKSFSRASSILNHKR-LHGDEKPFKCEECGKRFTENSQLHS 613

Query: 67  YHQI 70
           + ++
Sbjct: 614 HQRV 617

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q61116|ZN235_MOUSE Zinc finger protein 235 OS=Mus musculus GN=Znf235 PE=2 SV=1

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 1/64 (1%)

Query: 7   LKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHS 66
           L +H RVH G KPY CEVCG+ F QW  L+ H+  +H+  K ++C  CGK F+     H+
Sbjct: 328 LNIHRRVHTGEKPYKCEVCGKGFTQWAHLQAHE-RIHTGEKPYKCGDCGKRFSCSSNLHT 386

Query: 67  YHQI 70
           + ++
Sbjct: 387 HQRV 390

May be involved in transcriptional regulation.

Mus musculus (taxid: 10090)

>sp|Q504L7|ZN574_RAT Zinc finger protein 574 OS=Rattus norvegicus GN=Znf574 PE=2 SV=1

 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 35/55 (63%), Gaps = 1/55 (1%)

Query: 5   TYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFA 59
           T L+VH R+H G +PY C  CG+ FRQ   LK H+  LH+  + F CE CGK FA
Sbjct: 753 TSLQVHRRIHTGERPYPCPDCGKAFRQSTHLKDHR-RLHTGERPFACEVCGKAFA 806

May be involved in transcriptional regulation.

Rattus norvegicus (taxid: 10116)

>sp|Q8BY46|ZN574_MOUSE Zinc finger protein 574 OS=Mus musculus GN=Znf574 PE=2 SV=1

 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 35/55 (63%), Gaps = 1/55 (1%)

Query: 5   TYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFA 59
           T L+VH R+H G +PY C  CG+ FRQ   LK H+  LH+  + F CE CGK FA
Sbjct: 755 TSLQVHRRIHTGERPYPCPDCGKAFRQSTHLKDHR-RLHTGERPFACEVCGKAFA 808

May be involved in transcriptional regulation.

Mus musculus (taxid: 10090)

>sp|Q6ZN55|ZN574_HUMAN Zinc finger protein 574 OS=Homo sapiens GN=ZNF574 PE=1 SV=2

 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 35/55 (63%), Gaps = 1/55 (1%)

Query: 5   TYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFA 59
           T L+VH R+H G +PY C  CG+ FRQ   LK H+  LH+  + F CE CGK FA
Sbjct: 751 TSLQVHRRIHTGERPYPCPDCGKAFRQSTHLKDHR-RLHTGERPFACEVCGKAFA 804

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q5R4P8|ZN574_PONAB Zinc finger protein 574 OS=Pongo abelii GN=ZNF574 PE=2 SV=1

 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 35/55 (63%), Gaps = 1/55 (1%)

Query: 5   TYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFA 59
           T L+VH R+H G +PY C  CG+ FRQ   LK H+  LH+  + F CE CGK FA
Sbjct: 750 TSLQVHRRIHTGERPYPCPDCGKAFRQSTHLKDHR-RLHTGERPFACEVCGKAFA 803

May be involved in transcriptional regulation.

Pongo abelii (taxid: 9601)

>sp|Q6P2A1|PRDM9_DANRE Histone-lysine N-methyltransferase PRDM9 OS=Danio rerio GN=prdm9 PE=2 SV=1

 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 37/64 (57%), Gaps = 1/64 (1%)

Query: 7   LKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHS 66
           L VH R H G KP+ C  CG  FRQ GDL+ H+   HS V+  QC  CGK F+R     +
Sbjct: 760 LNVHLRTHTGEKPFLCSQCGESFRQSGDLRRHEQK-HSGVRPCQCPDCGKSFSRPQSLKA 818

Query: 67  YHQI 70
           + Q+
Sbjct: 819 HQQL 822

Histone methyltransferase that specifically trimethylates 'Lys-4' of histone H3 during meiotic prophase and is essential for proper meiotic progression. Does not have the ability to mono- and dimethylate 'Lys-4' of histone H3. H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional activation. Plays a central role in the transcriptional activation of genes during early meiotic prophase.

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	71
383853992	649	PREDICTED: zinc finger protein 195-like	0.774	0.084	0.767	1e-20
350411473	647	PREDICTED: zinc finger protein 45-like [	0.774	0.085	0.767	2e-20
340729771	647	PREDICTED: zinc finger protein 45-like [	0.887	0.097	0.687	3e-20
328787424	646	PREDICTED: zinc finger protein 227-like	0.774	0.085	0.767	3e-20
380020763	644	PREDICTED: zinc finger protein 227-like	0.774	0.085	0.767	4e-20
242009920	900	zinc finger protein, putative [Pediculus	0.887	0.07	0.687	2e-19
332016289	642	Zinc finger protein 192 [Acromyrmex echi	0.690	0.076	0.75	2e-19
328722486	756	PREDICTED: zinc finger protein 611-like	0.774	0.072	0.785	6e-19
270005714	779	hypothetical protein TcasGA2_TC007815 [T	0.690	0.062	0.75	2e-18
91080335	696	PREDICTED: similar to AGAP010009-PA [Tri	0.690	0.070	0.75	5e-18

>gi|383853992|ref|XP_003702506.1| PREDICTED: zinc finger protein 195-like [Megachile rotundata]

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 43/56 (76%), Positives = 47/56 (83%)

Query: 7   LKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKY 62
           LKVH R+H G KPY CE CGRHFRQWGDLKYH  S+HS+ K +QCEYCGKDFARKY
Sbjct: 428 LKVHKRLHSGDKPYKCEECGRHFRQWGDLKYHSTSIHSEQKQYQCEYCGKDFARKY 483

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350411473|ref|XP_003489363.1| PREDICTED: zinc finger protein 45-like [Bombus impatiens]

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/56 (76%), Positives = 47/56 (83%)

Query: 7   LKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKY 62
           LKVH R+H G KPY CE CGRHFRQWGDLKYH  S+HS+ K +QCEYCGKDFARKY
Sbjct: 427 LKVHKRLHSGDKPYKCEECGRHFRQWGDLKYHATSIHSEQKQYQCEYCGKDFARKY 482

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340729771|ref|XP_003403169.1| PREDICTED: zinc finger protein 45-like [Bombus terrestris]

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 44/64 (68%), Positives = 50/64 (78%)

Query: 7   LKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHS 66
           LKVH R+H G KPY CE CGRHFRQWGDLKYH  S+HS+ K +QCEYCGKDFARKY    
Sbjct: 427 LKVHKRLHSGDKPYKCEECGRHFRQWGDLKYHATSIHSEQKQYQCEYCGKDFARKYSLIV 486

Query: 67  YHQI 70
           + +I
Sbjct: 487 HRRI 490

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328787424|ref|XP_395120.3| PREDICTED: zinc finger protein 227-like [Apis mellifera]

 Score =  102 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 43/56 (76%), Positives = 47/56 (83%)

Query: 7   LKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKY 62
           LKVH R+H G KPY CE CGRHFRQWGDLKYH  S+HS+ K +QCEYCGKDFARKY
Sbjct: 427 LKVHKRLHSGDKPYKCEECGRHFRQWGDLKYHSTSIHSEQKQYQCEYCGKDFARKY 482

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380020763|ref|XP_003694248.1| PREDICTED: zinc finger protein 227-like [Apis florea]

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 43/56 (76%), Positives = 47/56 (83%)

Query: 7   LKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKY 62
           LKVH R+H G KPY CE CGRHFRQWGDLKYH  S+HS+ K +QCEYCGKDFARKY
Sbjct: 425 LKVHKRLHSGDKPYKCEECGRHFRQWGDLKYHSTSIHSEQKQYQCEYCGKDFARKY 480

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242009920|ref|XP_002425730.1| zinc finger protein, putative [Pediculus humanus corporis] gi|212509631|gb|EEB12992.1| zinc finger protein, putative [Pediculus humanus corporis]

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/64 (68%), Positives = 50/64 (78%)

Query: 7   LKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHS 66
           LKVH R H G+KP+ CE CGR+FRQWGDLKYH  S+HSD K FQCEYCGKDFARKY    
Sbjct: 683 LKVHMRQHSGVKPFKCEFCGRNFRQWGDLKYHCISIHSDQKNFQCEYCGKDFARKYSLTV 742

Query: 67  YHQI 70
           + +I
Sbjct: 743 HSRI 746

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332016289|gb|EGI57202.1| Zinc finger protein 192 [Acromyrmex echinatior]

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/56 (75%), Positives = 46/56 (82%)

Query: 7   LKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKY 62
           LKVH R+H G KPY CE CGRHFRQWGDLKYH  SLHS+ K +QCEYC K+FARKY
Sbjct: 433 LKVHKRLHSGDKPYKCEECGRHFRQWGDLKYHLTSLHSEHKQYQCEYCAKEFARKY 488

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328722486|ref|XP_001946974.2| PREDICTED: zinc finger protein 611-like [Acyrthosiphon pisum]

 Score = 98.2 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 44/56 (78%), Positives = 49/56 (87%)

Query: 7   LKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKY 62
           LKVHNR+H G KP+ CE CGR+FRQWGDLKYH ASLHS+ K FQCE+CGKDFARKY
Sbjct: 515 LKVHNRLHTGDKPFECEWCGRNFRQWGDLKYHIASLHSESKQFQCEFCGKDFARKY 570

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270005714|gb|EFA02162.1| hypothetical protein TcasGA2_TC007815 [Tribolium castaneum]

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/56 (75%), Positives = 47/56 (83%)

Query: 7   LKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKY 62
           LKVH R+H G KPY C+ CG++FRQWGDLKYH  SLHS+ K FQCEYCGKDFARKY
Sbjct: 460 LKVHLRLHSGDKPYHCQDCGKNFRQWGDLKYHMTSLHSNEKQFQCEYCGKDFARKY 515

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91080335|ref|XP_974602.1| PREDICTED: similar to AGAP010009-PA [Tribolium castaneum]

 Score = 95.1 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 42/56 (75%), Positives = 47/56 (83%)

Query: 7   LKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKY 62
           LKVH R+H G KPY C+ CG++FRQWGDLKYH  SLHS+ K FQCEYCGKDFARKY
Sbjct: 476 LKVHLRLHSGDKPYHCQDCGKNFRQWGDLKYHMTSLHSNEKQFQCEYCGKDFARKY 531

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	71
FB|FBgn0031573	714	CG3407 [Drosophila melanogaste	0.901	0.089	0.562	4.1e-16
UNIPROTKB|E1BCC4	646	LOC787057 "Uncharacterized pro	0.915	0.100	0.449	6.9e-12
RGD|620595	744	Zfp111 "zinc finger protein 11	0.887	0.084	0.421	3.8e-11
UNIPROTKB|G3V9G6	744	Zfp111 "Protein Zfp111" [Rattu	0.887	0.084	0.421	3.8e-11
UNIPROTKB|F1LYN5	149	F1LYN5 "Uncharacterized protei	0.915	0.436	0.378	4.5e-11
UNIPROTKB|I3L6L1	650	ZNF226 "Uncharacterized protei	0.816	0.089	0.524	6.5e-11
UNIPROTKB|J9P2R7	668	ZNF234 "Uncharacterized protei	0.887	0.094	0.453	6.8e-11
UNIPROTKB|Q9NYT6	803	ZNF226 "Zinc finger protein 22	0.816	0.072	0.524	8.8e-11
UNIPROTKB|J9P984	805	ZNF226 "Uncharacterized protei	0.816	0.072	0.524	8.8e-11
ZFIN|ZDB-GENE-071004-59	217	zgc:173620 "zgc:173620" [Danio	0.887	0.290	0.421	9.4e-11

FB|FBgn0031573 CG3407 [Drosophila melanogaster (taxid:7227)]

 Score = 211 (79.3 bits), Expect = 4.1e-16, P = 4.1e-16
 Identities = 36/64 (56%), Positives = 44/64 (68%)

Query:     7 LKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHS 66
             LK H R H G+KP+ C+ C   FRQWGDLKYH  S HSDVKA  CE+CGK F+R+Y    
Sbjct:   538 LKAHERTHSGVKPFKCDKCEFQFRQWGDLKYHIISRHSDVKAHMCEFCGKSFSRRYSLVV 597

Query:    67 YHQI 70
             + +I
Sbjct:   598 HRRI 601

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|E1BCC4 LOC787057 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 171 (65.3 bits), Expect = 6.9e-12, P = 6.9e-12
 Identities = 31/69 (44%), Positives = 44/69 (63%)

Query:     3 KFTYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKY 62
             K ++L++H R+H G KPY C  CG+ FRQW D++ H   +H+  K F+C  CGK F R  
Sbjct:   393 KRSHLRLHERIHTGEKPYKCTECGKGFRQWSDIRIH-LRIHAGEKPFKCSKCGKSFTRS- 450

Query:    63 QAH-SYHQI 70
              +H + HQI
Sbjct:   451 -SHLTRHQI 458

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

RGD|620595 Zfp111 "zinc finger protein 111" [Rattus norvegicus (taxid:10116)]

 Score = 165 (63.1 bits), Expect = 3.8e-11, P = 3.8e-11
 Identities = 27/64 (42%), Positives = 41/64 (64%)

Query:     7 LKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHS 66
             L +H RVH G KPY CEVCG+ F     L+ H+  +H+D K ++CEYCG+ F+     H+
Sbjct:   449 LNIHRRVHTGEKPYKCEVCGKGFNYLSHLQAHE-KIHADQKPYKCEYCGRRFSYSSNLHT 507

Query:    67 YHQI 70
             + ++
Sbjct:   508 HQRV 511

GO:0003677 "DNA binding" evidence=NAS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

UNIPROTKB|G3V9G6 Zfp111 "Protein Zfp111" [Rattus norvegicus (taxid:10116)]

 Score = 165 (63.1 bits), Expect = 3.8e-11, P = 3.8e-11
 Identities = 27/64 (42%), Positives = 41/64 (64%)

Query:     7 LKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHS 66
             L +H RVH G KPY CEVCG+ F     L+ H+  +H+D K ++CEYCG+ F+     H+
Sbjct:   449 LNIHRRVHTGEKPYKCEVCGKGFNYLSHLQAHE-KIHADQKPYKCEYCGRRFSYSSNLHT 507

Query:    67 YHQI 70
             + ++
Sbjct:   508 HQRV 511

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1LYN5 F1LYN5 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)]

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 25/66 (37%), Positives = 41/66 (62%)

Query:     5 TYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQA 64
             +YL VH R H G KPYGC++CG+ F+Q   L  HK + H+  K ++C  CGK + +    
Sbjct:    49 SYLTVHQRTHSGEKPYGCDICGKSFKQNSHLHAHKRT-HTSEKPYECIVCGKSYKQSPSL 107

Query:    65 HSYHQI 70
             +++ ++
Sbjct:   108 YTHKKV 113

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|I3L6L1 ZNF226 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 162 (62.1 bits), Expect = 6.5e-11, P = 6.5e-11
 Identities = 32/61 (52%), Positives = 39/61 (63%)

Query:     7 LKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARK--YQA 64
             LK+H R+H G KPY CE CG+ FRQ  +L  H+  +HS  K F+CE CGK F R    QA
Sbjct:   524 LKIHCRIHTGEKPYNCEECGKVFRQASNLLAHQR-VHSGEKPFKCEECGKSFGRSSHLQA 582

Query:    65 H 65
             H
Sbjct:   583 H 583

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|J9P2R7 ZNF234 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 162 (62.1 bits), Expect = 6.8e-11, P = 6.8e-11
 Identities = 29/64 (45%), Positives = 40/64 (62%)

Query:     7 LKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHS 66
             L +H RVH G KPY C  CG+HF Q   LK H+ S+HS+ K ++C+ CGK F    Q  S
Sbjct:   552 LDMHQRVHTGEKPYKCGECGKHFSQASSLKVHQ-SVHSEEKPYKCDVCGKVFRHSSQLQS 610

Query:    67 YHQI 70
             + ++
Sbjct:   611 HQRV 614

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q9NYT6 ZNF226 "Zinc finger protein 226" [Homo sapiens (taxid:9606)]

 Score = 162 (62.1 bits), Expect = 8.8e-11, P = 8.8e-11
 Identities = 32/61 (52%), Positives = 39/61 (63%)

Query:     7 LKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARK--YQA 64
             LK+H R+H G KPY CE CG+ FRQ  +L  H+  +HS  K F+CE CGK F R    QA
Sbjct:   602 LKIHCRIHTGEKPYNCEECGKVFRQASNLLAHQR-VHSGEKPFKCEECGKSFGRSAHLQA 660

Query:    65 H 65
             H
Sbjct:   661 H 661

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|J9P984 ZNF226 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 162 (62.1 bits), Expect = 8.8e-11, P = 8.8e-11
 Identities = 32/61 (52%), Positives = 39/61 (63%)

Query:     7 LKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARK--YQA 64
             LK+H R+H G KPY CE CG+ FRQ  +L  H+  +HS  K F+CE CGK F R    QA
Sbjct:   604 LKIHCRIHTGEKPYNCEECGKVFRQASNLLAHQR-VHSGEKPFKCEECGKSFGRSSHLQA 662

Query:    65 H 65
             H
Sbjct:   663 H 663

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

ZFIN|ZDB-GENE-071004-59 zgc:173620 "zgc:173620" [Danio rerio (taxid:7955)]

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 27/64 (42%), Positives = 37/64 (57%)

Query:     7 LKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHS 66
             LK+H R+H G KPY C  CG+ F Q  +L Y+   +H+  K F+C  CGK F R    H 
Sbjct:    81 LKIHMRIHTGEKPYTCNQCGKSFNQSSNL-YNHMMIHTGEKPFKCTQCGKSFNRSSDLHQ 139

Query:    67 YHQI 70
             + +I
Sbjct:   140 HMRI 143

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	71
COG5189	423	COG5189, SFP1, Putative transcriptional repressor	0.001

>gnl|CDD|227516 COG5189, SFP1, Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

 Score = 34.7 bits (79), Expect = 0.001
 Identities = 13/34 (38%), Positives = 17/34 (50%)

Query: 10  HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLH 43
            N      KPY CEVC + ++    LKYH+   H
Sbjct: 389 MNIFSAKDKPYRCEVCDKRYKNLNGLKYHRKHSH 422

Length = 423

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	71
KOG2462|consensus	279		99.86
KOG2462|consensus	279		99.85
KOG3623|consensus	1007		99.73
KOG3576|consensus	267		99.59
KOG3623|consensus	1007		99.59
PHA00733	128	hypothetical protein	99.42
PHA02768	55	hypothetical protein; Provisional	99.4
KOG1074|consensus	958		99.37
KOG3576|consensus	267		99.31
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	99.24
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	99.17
KOG1074|consensus	958		99.17
KOG3608|consensus	467		99.14
KOG3608|consensus	467		99.1
PHA00732	79	hypothetical protein	99.01
PHA00616	44	hypothetical protein	98.88
PHA00733	128	hypothetical protein	98.72
KOG3993|consensus	500		98.67
COG5189	423	SFP1 Putative transcriptional repressor regulating	98.65
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.61
PLN03086	567	PRLI-interacting factor K; Provisional	98.59
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	98.56
PHA00616	44	hypothetical protein	98.47
PLN03086	567	PRLI-interacting factor K; Provisional	98.4
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	98.37
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	98.33
PHA02768	55	hypothetical protein; Provisional	98.31
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	98.3
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	98.29
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	98.07
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	98.05
PRK04860	160	hypothetical protein; Provisional	97.98
smart00355	26	ZnF_C2H2 zinc finger.	97.95
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	97.82
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	97.8
smart00355	26	ZnF_C2H2 zinc finger.	97.6
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	97.59
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	97.58
KOG3993|consensus	500		97.58
PHA00732	79	hypothetical protein	97.56
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	97.54
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	97.35
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	97.17
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	97.03
PRK04860	160	hypothetical protein; Provisional	96.46
COG4049	65	Uncharacterized protein containing archaeal-type C	96.31
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	95.99
KOG1146|consensus	1406		95.86
COG5048	467	FOG: Zn-finger [General function prediction only]	95.54
KOG2893|consensus	341		95.39
TIGR00373	158	conserved hypothetical protein TIGR00373. This fam	95.33
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	95.27
COG1592	166	Rubrerythrin [Energy production and conversion]	95.13
smart00531	147	TFIIE Transcription initiation factor IIE.	95.12
PF13719	37	zinc_ribbon_5: zinc-ribbon domain	94.7
PRK06266	178	transcription initiation factor E subunit alpha; V	94.67
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	94.61
TIGR02098	38	MJ0042_CXXC MJ0042 family finger-like domain. This	94.4
PF13717	36	zinc_ribbon_4: zinc-ribbon domain	94.18
KOG2186|consensus	276		93.96
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	93.54
COG2888	61	Predicted Zn-ribbon RNA-binding protein with a fun	93.24
KOG1146|consensus	1406		93.16
COG5189	423	SFP1 Putative transcriptional repressor regulating	93.04
cd00729	34	rubredoxin_SM Rubredoxin, Small Modular nonheme ir	92.72
PRK00398	46	rpoP DNA-directed RNA polymerase subunit P; Provis	92.69
TIGR02300	129	FYDLN_acid conserved hypothetical protein TIGR0230	92.54
smart00659	44	RPOLCX RNA polymerase subunit CX. present in RNA p	92.28
KOG2593|consensus	436		92.2
PF09723	42	Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR0134	92.07
KOG2893|consensus	341		91.63
KOG3408|consensus	129		91.6
PRK00464	154	nrdR transcriptional regulator NrdR; Validated	91.25
KOG2785|consensus	390		91.16
PF07754	24	DUF1610: Domain of unknown function (DUF1610); Int	90.98
PF02892	45	zf-BED: BED zinc finger; InterPro: IPR003656 Zinc	90.88
KOG4167|consensus	907		90.79
PF15269	54	zf-C2H2_7: Zinc-finger	90.69
smart00734	26	ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18	90.66
PF04959	214	ARS2: Arsenite-resistance protein 2; InterPro: IPR	90.55
TIGR02605	52	CxxC_CxxC_SSSS putative regulatory protein, FmdB f	90.39
COG5048	467	FOG: Zn-finger [General function prediction only]	90.38
PF13451	49	zf-trcl: Probable zinc-binding domain	90.09
COG1996	49	RPC10 DNA-directed RNA polymerase, subunit RPC10 (	89.99
KOG2482|consensus	423		89.53
PRK14890	59	putative Zn-ribbon RNA-binding protein; Provisiona	88.18
PF05191	36	ADK_lid: Adenylate kinase, active site lid; InterP	87.89
PF02176	60	zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A	87.06
PF10571	26	UPF0547: Uncharacterised protein family UPF0547; I	86.89
PHA00626	59	hypothetical protein	86.59
PF03604	32	DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa	86.2
PF10013	42	DUF2256: Uncharacterized protein conserved in bact	85.55
smart00614	50	ZnF_BED BED zinc finger. DNA-binding domain in chr	85.23
PRK03824	135	hypA hydrogenase nickel incorporation protein; Pro	84.99
PF04780	466	DUF629: Protein of unknown function (DUF629); Inte	84.67
smart00834	41	CxxC_CXXC_SSSS Putative regulatory protein. CxxC_C	84.2
PF04959	214	ARS2: Arsenite-resistance protein 2; InterPro: IPR	83.97
PF12907	40	zf-met2: Zinc-binding	83.9
PF07282	69	OrfB_Zn_ribbon: Putative transposase DNA-binding d	83.84
PF09963	56	DUF2197: Uncharacterized protein conserved in bact	83.39
COG1675	176	TFA1 Transcription initiation factor IIE, alpha su	83.34
COG3364	112	Zn-ribbon containing protein [General function pre	83.01
PLN02748	468	tRNA dimethylallyltransferase	82.96
PF07975	51	C1_4: TFIIH C1-like domain; InterPro: IPR004595 Al	82.91
COG4530	129	Uncharacterized protein conserved in bacteria [Fun	82.45
COG3091	156	SprT Zn-dependent metalloprotease, SprT family [Ge	82.22
COG4338	54	Uncharacterized protein conserved in bacteria [Fun	81.68
COG5236	493	Uncharacterized conserved protein, contains RING Z	81.56
KOG2231|consensus	669		81.35

>KOG2462|consensus

Probab=99.86  E-value=1.8e-22  Score=104.19  Aligned_cols=66  Identities=39%  Similarity=0.677  Sum_probs=56.5

Q ss_pred             ChHHHHHHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChhhHhhhchHHHHHhhh
Q psy12265          3 KFTYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQ   69 (71)
Q Consensus         3 ~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~   69 (71)
                      -+=.|+-|+|+|+||+||.|..|+++|...++|..||+ +|.+.++|+|..|++.|+..+.|.+|..
T Consensus       199 RPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQ-THS~~K~~qC~~C~KsFsl~SyLnKH~E  264 (279)
T KOG2462|consen  199 RPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQ-THSDVKKHQCPRCGKSFALKSYLNKHSE  264 (279)
T ss_pred             chHHhhcccccccCCCCccCCcccchhcchHHHHHHHH-hhcCCccccCcchhhHHHHHHHHHHhhh
Confidence            33456678899999999999999999999999999988 7988889999999999999999988864

>KOG2462|consensus

Probab=99.85  E-value=6.2e-22  Score=102.25  Aligned_cols=66  Identities=33%  Similarity=0.578  Sum_probs=61.9

Q ss_pred             ChHHHHHHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265          3 KFTYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus         3 ~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      +...|..|+++|+  -+.+|.+||+.|+.+.-|+.|++ .|+||+||.|+.|++.|+.+++|+-||+++
T Consensus       173 SmpALkMHirTH~--l~c~C~iCGKaFSRPWLLQGHiR-THTGEKPF~C~hC~kAFADRSNLRAHmQTH  238 (279)
T KOG2462|consen  173 SMPALKMHIRTHT--LPCECGICGKAFSRPWLLQGHIR-THTGEKPFSCPHCGKAFADRSNLRAHMQTH  238 (279)
T ss_pred             ehHHHhhHhhccC--CCcccccccccccchHHhhcccc-cccCCCCccCCcccchhcchHHHHHHHHhh
Confidence            4678899999985  78999999999999999999998 899999999999999999999999999875

>KOG3623|consensus

Probab=99.73  E-value=1.4e-18  Score=99.34  Aligned_cols=70  Identities=34%  Similarity=0.586  Sum_probs=66.2

Q ss_pred             CcChHHHHHHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265          1 MEKFTYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus         1 f~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      |.+.++|.+|.-.|+|.+||.|.+|.++|..+-.|+.|++ .|.|++||+|..|++.|+....+.+||-.|
T Consensus       904 FqKqSSLaRHKYEHsGqRPyqC~iCkKAFKHKHHLtEHkR-LHSGEKPfQCdKClKRFSHSGSYSQHMNHR  973 (1007)
T KOG3623|consen  904 FQKQSSLARHKYEHSGQRPYQCIICKKAFKHKHHLTEHKR-LHSGEKPFQCDKCLKRFSHSGSYSQHMNHR  973 (1007)
T ss_pred             HHhhHHHHHhhhhhcCCCCcccchhhHhhhhhhhhhhhhh-hccCCCcchhhhhhhhcccccchHhhhccc
Confidence            6678999999999999999999999999999999999998 899999999999999999999999998654

>KOG3576|consensus

Probab=99.59  E-value=2.7e-16  Score=79.14  Aligned_cols=67  Identities=28%  Similarity=0.523  Sum_probs=60.7

Q ss_pred             cChHHHHHHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChhhHhhhchHHHHHhhh
Q psy12265          2 EKFTYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQ   69 (71)
Q Consensus         2 ~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~   69 (71)
                      .-+.-|.+|++.|...+.+.|..||++|-..-+|++|++ .|+|.+||+|..|++.|.++-.|+.|.+
T Consensus       128 ~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~r-thtgvrpykc~~c~kaftqrcsleshl~  194 (267)
T KOG3576|consen  128 GLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTR-THTGVRPYKCSLCEKAFTQRCSLESHLK  194 (267)
T ss_pred             hHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhc-cccCccccchhhhhHHHHhhccHHHHHH
Confidence            334567889999999999999999999999999999998 8999999999999999999999999864

>KOG3623|consensus

Probab=99.59  E-value=4.7e-16  Score=89.27  Aligned_cols=70  Identities=30%  Similarity=0.507  Sum_probs=61.8

Q ss_pred             CcChHHHHHHHhHhhC-------------CCceecccccccccchhhHHHhHhhhcCCcCceeCChhhHhhhchHHHHHh
Q psy12265          1 MEKFTYLKVHNRVHLG-------------LKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHSY   67 (71)
Q Consensus         1 f~~~~~l~~h~~~~~~-------------~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h   67 (71)
                      |-.++.|.+|+.+|..             -+.|+|..|+++|..+-.|+.|.+ +|.|++||.|+.|++.|+....+..|
T Consensus       250 FAyRtQLErhm~~hkpg~dqa~sltqsa~lRKFKCtECgKAFKfKHHLKEHlR-IHSGEKPfeCpnCkKRFSHSGSySSH  328 (1007)
T KOG3623|consen  250 FAYRTQLERHMQLHKPGGDQAISLTQSALLRKFKCTECGKAFKFKHHLKEHLR-IHSGEKPFECPNCKKRFSHSGSYSSH  328 (1007)
T ss_pred             hhhHHHHHHHHHhhcCCCcccccccchhhhccccccccchhhhhHHHHHhhhe-eecCCCCcCCcccccccccCCccccc
Confidence            4567889999988842             256999999999999999999998 99999999999999999999999999


Q ss_pred             hhcC
Q psy12265         68 HQIR   71 (71)
Q Consensus        68 ~~~~   71 (71)
                      |..+
T Consensus       329 mSSK  332 (1007)
T KOG3623|consen  329 MSSK  332 (1007)
T ss_pred             cccc
Confidence            8653

>PHA00733 hypothetical protein

Probab=99.42  E-value=2e-13  Score=65.15  Aligned_cols=60  Identities=23%  Similarity=0.331  Sum_probs=50.2

Q ss_pred             HHHHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265          7 LKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus         7 l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      |.+++..+ +++||.|..|++.|.....|..|++ .+  +.+|.|..|++.|.....|..|+..
T Consensus        62 l~~~~~~~-~~kPy~C~~Cgk~Fss~s~L~~H~r-~h--~~~~~C~~CgK~F~~~~sL~~H~~~  121 (128)
T PHA00733         62 LYKLLTSK-AVSPYVCPLCLMPFSSSVSLKQHIR-YT--EHSKVCPVCGKEFRNTDSTLDHVCK  121 (128)
T ss_pred             HHhhcccC-CCCCccCCCCCCcCCCHHHHHHHHh-cC--CcCccCCCCCCccCCHHHHHHHHHH
Confidence            44554443 5889999999999999999999987 45  4579999999999999999999864

>PHA02768 hypothetical protein; Provisional

Probab=99.40  E-value=7.2e-14  Score=57.30  Aligned_cols=45  Identities=18%  Similarity=0.364  Sum_probs=40.1

Q ss_pred             ceecccccccccchhhHHHhHhhhcCCcCceeCChhhHhhhchHHHHH
Q psy12265         19 PYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHS   66 (71)
Q Consensus        19 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~   66 (71)
                      -|.|+.||+.|+..++|..|++ .|+  ++++|..|++.|...+.|..
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r-~H~--k~~kc~~C~k~f~~~s~l~~   49 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLR-KHN--TNLKLSNCKRISLRTGEYIE   49 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHH-hcC--CcccCCcccceecccceeEE
Confidence            3799999999999999999998 687  68999999999998877653

>KOG1074|consensus

Probab=99.37  E-value=9.9e-14  Score=80.65  Aligned_cols=69  Identities=32%  Similarity=0.655  Sum_probs=58.9

Q ss_pred             cChHHHHHHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcC----ceeCC---hhhHhhhchHHHHHhhhcC
Q psy12265          2 EKFTYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVK----AFQCE---YCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus         2 ~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~----~~~C~---~c~~~f~~~~~l~~h~~~~   71 (71)
                      ..+++|+.|.++|+||+||+|.+|+.+|+.+++|+.|+. .|....    .+.|+   +|-+.|.+-..|..|++.+
T Consensus       616 SC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~-vHka~p~~R~q~ScP~~~ic~~kftn~V~lpQhIriH  691 (958)
T KOG1074|consen  616 SCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMS-VHKAKPPARVQFSCPSTFICQKKFTNAVTLPQHIRIH  691 (958)
T ss_pred             cchhhhhhhhhcccCcCccccccccchhccccchhhccc-ccccCccccccccCCchhhhcccccccccccceEEee
Confidence            456889999999999999999999999999999999987 675543    36788   8999999999999888753

>KOG3576|consensus

Probab=99.31  E-value=9.8e-13  Score=66.54  Aligned_cols=70  Identities=30%  Similarity=0.533  Sum_probs=59.2

Q ss_pred             CcChHHHHHHHhHhhCCCceecccccccccchhhHHHhHhhhcCC----------cCceeCChhhHhhhchHHHHHhhhc
Q psy12265          1 MEKFTYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSD----------VKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus         1 f~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~----------~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      |-....|++|+++|++.+||.|..|+++|++..+|..|....|..          ++.|.|..||.+-.....+..|+++
T Consensus       155 fndtfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~  234 (267)
T KOG3576|consen  155 FNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKL  234 (267)
T ss_pred             ccchhhhhhhhccccCccccchhhhhHHHHhhccHHHHHHHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHh
Confidence            445578999999999999999999999999999999998766643          3568999999988888777777654

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=99.24  E-value=1e-11  Score=44.20  Aligned_cols=25  Identities=48%  Similarity=1.000  Sum_probs=16.2

Q ss_pred             HHHHHHhHhhCCCceeccccccccc
Q psy12265          6 YLKVHNRVHLGLKPYGCEVCGRHFR   30 (71)
Q Consensus         6 ~l~~h~~~~~~~~~~~c~~c~~~~~   30 (71)
                      +|..|+++|.+++||.|+.|++.|.
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~   25 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFS   25 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEES
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeC
Confidence            3566666666666666666666654

...

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=99.17  E-value=6.8e-12  Score=44.65  Aligned_cols=26  Identities=38%  Similarity=0.956  Sum_probs=23.1

Q ss_pred             hHHHhHhhhcCCcCceeCChhhHhhhc
Q psy12265         34 DLKYHKASLHSDVKAFQCEYCGKDFAR   60 (71)
Q Consensus        34 ~l~~h~~~~~~~~~~~~C~~c~~~f~~   60 (71)
                      +|.+|++ .|++++||.|+.|++.|.+
T Consensus         1 ~l~~H~~-~H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMR-THTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHH-HHSSSSSEEESSSSEEESS
T ss_pred             CHHHHhh-hcCCCCCCCCCCCcCeeCc
Confidence            4789998 7999999999999998863

...

>KOG1074|consensus

Probab=99.17  E-value=1.9e-11  Score=71.52  Aligned_cols=51  Identities=25%  Similarity=0.565  Sum_probs=48.3

Q ss_pred             eecccccccccchhhHHHhHhhhcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         20 YGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        20 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      ..|..|++.|...++|..|++ +|++++||.|..|++.|..+..|+.||.++
T Consensus       880 h~C~vCgk~FsSSsALqiH~r-THtg~KPF~C~fC~~aFttrgnLKvHMgtH  930 (958)
T KOG1074|consen  880 HVCNVCGKQFSSSAALEIHMR-THTGPKPFFCHFCEEAFTTRGNLKVHMGTH  930 (958)
T ss_pred             hhhccchhcccchHHHHHhhh-cCCCCCCccchhhhhhhhhhhhhhhhhccc
Confidence            789999999999999999998 899999999999999999999999998753

>KOG3608|consensus

Probab=99.14  E-value=5.2e-11  Score=64.52  Aligned_cols=70  Identities=30%  Similarity=0.364  Sum_probs=60.5

Q ss_pred             CcChHHHHHHHhHhhCCCceecccccccccchhhHHHhHhhh-cCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265          1 MEKFTYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASL-HSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus         1 f~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~-~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      |+++..|..|.+.|++++...|..|+..|.....|..|.+.. -...++|.|..|-+.|+....|..|+..
T Consensus       189 ~~~k~~LreH~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~r  259 (467)
T KOG3608|consen  189 MGNKYRLREHIRTHSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVR  259 (467)
T ss_pred             hccHHHHHHHHHhcCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHH
Confidence            467889999999999999999999999999999999998731 2246789999999999999999888754

>KOG3608|consensus

Probab=99.10  E-value=1.9e-10  Score=62.41  Aligned_cols=63  Identities=27%  Similarity=0.441  Sum_probs=42.0

Q ss_pred             HHHHHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265          6 YLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus         6 ~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      .|..|+..|.  ..|.|+.|+.+....++|..|++..|..++||+|..|...+.+.++|++|..+
T Consensus       252 lL~~Hv~rHv--n~ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~  314 (467)
T KOG3608|consen  252 LLKSHVVRHV--NCYKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQV  314 (467)
T ss_pred             HHHHHHHHhh--hcccccccccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHh
Confidence            3444444442  34677777777677777777776667777777777777777777777777654

>PHA00732 hypothetical protein

Probab=99.01  E-value=1.7e-10  Score=50.99  Aligned_cols=46  Identities=22%  Similarity=0.426  Sum_probs=37.2

Q ss_pred             ceecccccccccchhhHHHhHhhhcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265         19 PYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        19 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      ||.|..|++.|....+|..|++..|.   ++.|+.|++.|.   .|..|+.+
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~---~~~C~~CgKsF~---~l~~H~~~   46 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHT---LTKCPVCNKSYR---RLNQHFYS   46 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccC---CCccCCCCCEeC---Chhhhhcc
Confidence            68899999999999999999863354   358999999998   47777654

>PHA00616 hypothetical protein

Probab=98.88  E-value=7.2e-10  Score=43.62  Aligned_cols=35  Identities=26%  Similarity=0.413  Sum_probs=31.5

Q ss_pred             ceecccccccccchhhHHHhHhhhcCCcCceeCChh
Q psy12265         19 PYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYC   54 (71)
Q Consensus        19 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c   54 (71)
                      ||.|..||+.|...+++..|++ .+++++++.|+.-
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r-~~hg~~~~~~~~~   35 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLL-SVHKQNKLTLEYF   35 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHH-HhcCCCccceeEE
Confidence            6899999999999999999998 7889999988753

>PHA00733 hypothetical protein

Probab=98.72  E-value=4.8e-09  Score=50.26  Aligned_cols=65  Identities=14%  Similarity=0.033  Sum_probs=46.0

Q ss_pred             HHHHHHhHhhCCCceecccccccccchhhHHHhH--h--hhcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265          6 YLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHK--A--SLHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus         6 ~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~--~--~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      .|..+-......+++.|.+|...+..+..+..+.  .  ..+.+.+||.|+.|++.|.....|..|++.
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~   95 (128)
T PHA00733         27 ELKRYHSLTPEQKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRY   95 (128)
T ss_pred             HhhhhhcCChhhhhHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhc
Confidence            3443333333467799999998877766665541  1  123457899999999999999999999873

>KOG3993|consensus

Probab=98.67  E-value=1.5e-08  Score=56.26  Aligned_cols=66  Identities=24%  Similarity=0.407  Sum_probs=49.7

Q ss_pred             hHHHHHHHhHhhCCCceecccccccccchhhHHHhHhhhcC--------Cc-------------------------Ccee
Q psy12265          4 FTYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHS--------DV-------------------------KAFQ   50 (71)
Q Consensus         4 ~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~--------~~-------------------------~~~~   50 (71)
                      ...|.+|.-...-...|.|.+|++.|.-.++|..|.+ .|.        +.                         --|.
T Consensus       280 ~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRR-WHKPR~eaa~a~~~P~k~~~~~rae~~ea~rsg~dss~gi~~  358 (500)
T KOG3993|consen  280 AFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRR-WHKPRPEAAKAGSPPPKQAVETRAEVQEAERSGDDSSSGIFS  358 (500)
T ss_pred             HHHHhhccCCeeEEeeecCCcccccccCchhhhhhhc-ccCCchhhhhcCCCChhhhhhhhhhhhhccccCCcccCceee
Confidence            3445555433333456999999999999999999987 341        11                         1388


Q ss_pred             CChhhHhhhchHHHHHhhhc
Q psy12265         51 CEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        51 C~~c~~~f~~~~~l~~h~~~   70 (71)
                      |..|++.|.+...|..|+-+
T Consensus       359 C~~C~KkFrRqAYLrKHqlt  378 (500)
T KOG3993|consen  359 CHTCGKKFRRQAYLRKHQLT  378 (500)
T ss_pred             cHHhhhhhHHHHHHHHhHHh
Confidence            99999999999999999643

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=98.65  E-value=1e-08  Score=55.27  Aligned_cols=53  Identities=30%  Similarity=0.654  Sum_probs=44.8

Q ss_pred             CCceeccc--ccccccchhhHHHhHhhhc------------------CCcCceeCChhhHhhhchHHHHHhhh
Q psy12265         17 LKPYGCEV--CGRHFRQWGDLKYHKASLH------------------SDVKAFQCEYCGKDFARKYQAHSYHQ   69 (71)
Q Consensus        17 ~~~~~c~~--c~~~~~~~~~l~~h~~~~~------------------~~~~~~~C~~c~~~f~~~~~l~~h~~   69 (71)
                      ++||+|+.  |.+.|.....|+-|+...|                  ...+||+|++|++.+.+...|..|+.
T Consensus       347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~  419 (423)
T COG5189         347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRK  419 (423)
T ss_pred             CceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceeccc
Confidence            59999986  9999999999999986333                  12378999999999999999998875

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.61  E-value=8.6e-08  Score=39.55  Aligned_cols=49  Identities=18%  Similarity=0.302  Sum_probs=39.1

Q ss_pred             ceecccccccccchhhHHHhHhhhcCCc-CceeCChhhHhhhchHHHHHhhhc
Q psy12265         19 PYGCEVCGRHFRQWGDLKYHKASLHSDV-KAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        19 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~-~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      .|.|+.|++ ..+...|..|....|..+ +.+.|++|...+..  +|..|+..
T Consensus         2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~~--~l~~Hl~~   51 (54)
T PF05605_consen    2 SFTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVTD--NLIRHLNS   51 (54)
T ss_pred             CcCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhhh--HHHHHHHH
Confidence            488999999 566788999987677764 57899999987553  78888864

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PLN03086 PRLI-interacting factor K; Provisional

Probab=98.59  E-value=1e-07  Score=54.89  Aligned_cols=50  Identities=22%  Similarity=0.552  Sum_probs=32.5

Q ss_pred             HHHHHHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChhhHhhh
Q psy12265          5 TYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFA   59 (71)
Q Consensus         5 ~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f~   59 (71)
                      ..|..|+.++.  +++.|. |+..+ ....|..|+. .+.+.+++.|..|+..+.
T Consensus       466 s~LekH~~~~H--kpv~Cp-Cg~~~-~R~~L~~H~~-thCp~Kpi~C~fC~~~v~  515 (567)
T PLN03086        466 GEMEKHMKVFH--EPLQCP-CGVVL-EKEQMVQHQA-STCPLRLITCRFCGDMVQ  515 (567)
T ss_pred             HHHHHHHHhcC--CCccCC-CCCCc-chhHHHhhhh-ccCCCCceeCCCCCCccc
Confidence            45666766653  667777 77543 4567777765 566777777777776663

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.56  E-value=1.6e-08  Score=34.70  Aligned_cols=21  Identities=29%  Similarity=0.727  Sum_probs=13.3

Q ss_pred             eeCChhhHhhhchHHHHHhhh
Q psy12265         49 FQCEYCGKDFARKYQAHSYHQ   69 (71)
Q Consensus        49 ~~C~~c~~~f~~~~~l~~h~~   69 (71)
                      |.|+.|++.|.....|..|++
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~   21 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMR   21 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHh
Confidence            456666666666666666665

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PHA00616 hypothetical protein

Probab=98.47  E-value=9.3e-08  Score=37.68  Aligned_cols=23  Identities=26%  Similarity=0.432  Sum_probs=21.4

Q ss_pred             ceeCChhhHhhhchHHHHHhhhc
Q psy12265         48 AFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        48 ~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      ||+|+.||..|.+.++|..|++.
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~   23 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLS   23 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHH
Confidence            68999999999999999999875

>PLN03086 PRLI-interacting factor K; Provisional

Probab=98.40  E-value=5e-07  Score=52.22  Aligned_cols=62  Identities=16%  Similarity=0.392  Sum_probs=49.6

Q ss_pred             hHHHHHHHhHhhCCCceeccccccccc----------chhhHHHhHhhhcCCcCceeCChhhHhhhchHHHHHhh
Q psy12265          4 FTYLKVHNRVHLGLKPYGCEVCGRHFR----------QWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHSYH   68 (71)
Q Consensus         4 ~~~l~~h~~~~~~~~~~~c~~c~~~~~----------~~~~l~~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~   68 (71)
                      +..|..|+.+|.+++++.|..|+..+.          ....|..|.. . .|.+++.|..||+.+..+ ++..|+
T Consensus       489 R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~-~-CG~rt~~C~~Cgk~Vrlr-dm~~H~  560 (567)
T PLN03086        489 KEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHES-I-CGSRTAPCDSCGRSVMLK-EMDIHQ  560 (567)
T ss_pred             hhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhHHHHHH-h-cCCcceEccccCCeeeeh-hHHHHH
Confidence            467889999999999999999999884          2357889976 3 589999999999887654 455554

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=98.37  E-value=1.1e-07  Score=33.76  Aligned_cols=21  Identities=29%  Similarity=0.710  Sum_probs=10.6

Q ss_pred             eeCChhhHhhhchHHHHHhhh
Q psy12265         49 FQCEYCGKDFARKYQAHSYHQ   69 (71)
Q Consensus        49 ~~C~~c~~~f~~~~~l~~h~~   69 (71)
                      |.|..|++.|.....|..|++
T Consensus         2 ~~C~~C~~~F~~~~~l~~H~~   22 (27)
T PF13912_consen    2 FECDECGKTFSSLSALREHKR   22 (27)
T ss_dssp             EEETTTTEEESSHHHHHHHHC
T ss_pred             CCCCccCCccCChhHHHHHhH
Confidence            445555555555555555543

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.33  E-value=3.9e-07  Score=31.12  Aligned_cols=21  Identities=38%  Similarity=0.903  Sum_probs=19.8

Q ss_pred             eecccccccccchhhHHHhHh
Q psy12265         20 YGCEVCGRHFRQWGDLKYHKA   40 (71)
Q Consensus        20 ~~c~~c~~~~~~~~~l~~h~~   40 (71)
                      |.|..|++.|..+..|..|++
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~   21 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMR   21 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHh
Confidence            689999999999999999987

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PHA02768 hypothetical protein; Provisional

Probab=98.31  E-value=3.4e-07  Score=37.73  Aligned_cols=34  Identities=21%  Similarity=0.127  Sum_probs=29.3

Q ss_pred             CcChHHHHHHHhHhhCCCceecccccccccchhhHH
Q psy12265          1 MEKFTYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLK   36 (71)
Q Consensus         1 f~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~   36 (71)
                      |....+|..|+++|.  +++.|..|++.|...+.|.
T Consensus        15 Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l~   48 (55)
T PHA02768         15 YIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEYI   48 (55)
T ss_pred             eccHHHHHHHHHhcC--CcccCCcccceecccceeE
Confidence            667889999999998  7999999999998777654

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=98.30  E-value=2.6e-07  Score=42.06  Aligned_cols=23  Identities=26%  Similarity=0.665  Sum_probs=18.1

Q ss_pred             ceeCChhhHhhhchHHHHHhhhc
Q psy12265         48 AFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        48 ~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      .+.|..|++.|.....|..|++.
T Consensus        50 ~~~C~~C~~~f~s~~~l~~Hm~~   72 (100)
T PF12756_consen   50 SFRCPYCNKTFRSREALQEHMRS   72 (100)
T ss_dssp             SEEBSSSS-EESSHHHHHHHHHH
T ss_pred             CCCCCccCCCCcCHHHHHHHHcC
Confidence            57888888888888888888864

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=98.29  E-value=2.8e-07  Score=31.54  Aligned_cols=22  Identities=36%  Similarity=0.727  Sum_probs=13.5

Q ss_pred             eeCChhhHhhhchHHHHHhhhc
Q psy12265         49 FQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        49 ~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      |.|+.|++.|.....|..|+..
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~   22 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRT   22 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHh
Confidence            4677777777777777777653

...

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=98.07  E-value=3.9e-06  Score=29.66  Aligned_cols=24  Identities=38%  Similarity=0.938  Sum_probs=21.7

Q ss_pred             ceecccccccccchhhHHHhHhhhc
Q psy12265         19 PYGCEVCGRHFRQWGDLKYHKASLH   43 (71)
Q Consensus        19 ~~~c~~c~~~~~~~~~l~~h~~~~~   43 (71)
                      ||.|..|++.|.+..+|..|++ .|
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~-~h   24 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKR-SH   24 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHC-TT
T ss_pred             CCCCCccCCccCChhHHHHHhH-Hh
Confidence            6899999999999999999986 44

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=98.05  E-value=5.8e-06  Score=28.08  Aligned_cols=22  Identities=32%  Similarity=0.921  Sum_probs=18.2

Q ss_pred             eecccccccccchhhHHHhHhh
Q psy12265         20 YGCEVCGRHFRQWGDLKYHKAS   41 (71)
Q Consensus        20 ~~c~~c~~~~~~~~~l~~h~~~   41 (71)
                      |.|+.|+..|.+...|..|+..
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~   22 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRT   22 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHh
Confidence            6899999999999999999873

...

>PRK04860 hypothetical protein; Provisional

Probab=97.98  E-value=3.6e-06  Score=41.86  Aligned_cols=39  Identities=23%  Similarity=0.621  Sum_probs=32.6

Q ss_pred             ceecccccccccchhhHHHhHhhhcCCcCceeCChhhHhhhchH
Q psy12265         19 PYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKY   62 (71)
Q Consensus        19 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f~~~~   62 (71)
                      +|.|. |+.   ....+.+|.+ +++++++|.|..|+..|....
T Consensus       119 ~Y~C~-C~~---~~~~~rrH~r-i~~g~~~YrC~~C~~~l~~~~  157 (160)
T PRK04860        119 PYRCK-CQE---HQLTVRRHNR-VVRGEAVYRCRRCGETLVFKG  157 (160)
T ss_pred             EEEcC-CCC---eeCHHHHHHH-HhcCCccEECCCCCceeEEec
Confidence            59998 987   5677788987 899999999999998876543

>smart00355 ZnF_C2H2 zinc finger

Probab=97.95  E-value=3.9e-06  Score=28.94  Aligned_cols=20  Identities=30%  Similarity=0.555  Sum_probs=12.0

Q ss_pred             eCChhhHhhhchHHHHHhhh
Q psy12265         50 QCEYCGKDFARKYQAHSYHQ   69 (71)
Q Consensus        50 ~C~~c~~~f~~~~~l~~h~~   69 (71)
                      .|..|++.|.....|..|++
T Consensus         2 ~C~~C~~~f~~~~~l~~H~~   21 (26)
T smart00355        2 RCPECGKVFKSKSALKEHMR   21 (26)
T ss_pred             CCCCCcchhCCHHHHHHHHH
Confidence            45566666666666666654

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=97.82  E-value=2.6e-06  Score=30.26  Aligned_cols=22  Identities=27%  Similarity=0.538  Sum_probs=13.9

Q ss_pred             eeCChhhHhhhchHHHHHhhhc
Q psy12265         49 FQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        49 ~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      |.|..|++.|.+...+..|++.
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            4566666666666666666653

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=97.80  E-value=4.1e-06  Score=29.05  Aligned_cols=19  Identities=26%  Similarity=0.705  Sum_probs=9.2

Q ss_pred             ecccccccccchhhHHHhH
Q psy12265         21 GCEVCGRHFRQWGDLKYHK   39 (71)
Q Consensus        21 ~c~~c~~~~~~~~~l~~h~   39 (71)
                      .|..|+..|.+...+..|+
T Consensus         2 ~C~~C~~~f~s~~~~~~H~   20 (25)
T PF12874_consen    2 YCDICNKSFSSENSLRQHL   20 (25)
T ss_dssp             EETTTTEEESSHHHHHHHH
T ss_pred             CCCCCCCCcCCHHHHHHHH
Confidence            4444555555444444443

>smart00355 ZnF_C2H2 zinc finger

Probab=97.60  E-value=6.8e-05  Score=25.63  Aligned_cols=24  Identities=38%  Similarity=0.764  Sum_probs=20.7

Q ss_pred             eecccccccccchhhHHHhHhhhcC
Q psy12265         20 YGCEVCGRHFRQWGDLKYHKASLHS   44 (71)
Q Consensus        20 ~~c~~c~~~~~~~~~l~~h~~~~~~   44 (71)
                      |.|..|++.|.....+..|++ .|.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~-~H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMR-THX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHH-Hhc
Confidence            579999999999999999987 553

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.59  E-value=2.2e-05  Score=31.82  Aligned_cols=26  Identities=15%  Similarity=0.321  Sum_probs=16.5

Q ss_pred             CcCceeCChhhHhhhchHHHHHhhhc
Q psy12265         45 DVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        45 ~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      .+.|-.|++|+..+.+..+|.+|+.+
T Consensus        21 S~~PatCP~C~a~~~~srnLrRHle~   46 (54)
T PF09237_consen   21 SEQPATCPICGAVIRQSRNLRRHLEI   46 (54)
T ss_dssp             TS--EE-TTT--EESSHHHHHHHHHH
T ss_pred             cCCCCCCCcchhhccchhhHHHHHHH
Confidence            45677888888888888888888754

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.58  E-value=3.7e-05  Score=31.15  Aligned_cols=32  Identities=28%  Similarity=0.487  Sum_probs=21.7

Q ss_pred             hCCCceecccccccccchhhHHHhHhhhcCCcC
Q psy12265         15 LGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVK   47 (71)
Q Consensus        15 ~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~   47 (71)
                      ..+.|..|+.|+..+.+..+|.+|+. ...+.+
T Consensus        20 ~S~~PatCP~C~a~~~~srnLrRHle-~~H~~k   51 (54)
T PF09237_consen   20 QSEQPATCPICGAVIRQSRNLRRHLE-IRHFKK   51 (54)
T ss_dssp             TTS--EE-TTT--EESSHHHHHHHHH-HHTTTS
T ss_pred             ccCCCCCCCcchhhccchhhHHHHHH-HHhccc
Confidence            45678999999999999999999997 444444

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>KOG3993|consensus

Probab=97.58  E-value=9.5e-06  Score=45.58  Aligned_cols=50  Identities=20%  Similarity=0.380  Sum_probs=41.0

Q ss_pred             eecccccccccchhhHHHhHhhhcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265         20 YGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        20 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      |.|..|.-.|...-.|.+|.= ....-..|+|+.|++.|+=.++|..|++-
T Consensus       268 yiCqLCK~kYeD~F~LAQHrC-~RIV~vEYrCPEC~KVFsCPANLASHRRW  317 (500)
T KOG3993|consen  268 YICQLCKEKYEDAFALAQHRC-PRIVHVEYRCPECDKVFSCPANLASHRRW  317 (500)
T ss_pred             HHHHHHHHhhhhHHHHhhccC-CeeEEeeecCCcccccccCchhhhhhhcc
Confidence            899999988988888888842 22234569999999999999999999874

>PHA00732 hypothetical protein

Probab=97.56  E-value=2.9e-05  Score=34.43  Aligned_cols=22  Identities=18%  Similarity=0.478  Sum_probs=20.7

Q ss_pred             ceeCChhhHhhhchHHHHHhhh
Q psy12265         48 AFQCEYCGKDFARKYQAHSYHQ   69 (71)
Q Consensus        48 ~~~C~~c~~~f~~~~~l~~h~~   69 (71)
                      ||.|..|++.|.....|..|++
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r   22 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHAR   22 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhh
Confidence            5889999999999999999986

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=97.54  E-value=3.2e-05  Score=26.98  Aligned_cols=20  Identities=20%  Similarity=0.599  Sum_probs=12.8

Q ss_pred             eeCChhhHhhhchHHHHHhhh
Q psy12265         49 FQCEYCGKDFARKYQAHSYHQ   69 (71)
Q Consensus        49 ~~C~~c~~~f~~~~~l~~h~~   69 (71)
                      ..|+.||+.| ....|..|++
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~   22 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEK   22 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHH
Confidence            3567777777 5666666654

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=97.35  E-value=0.00019  Score=24.71  Aligned_cols=22  Identities=23%  Similarity=0.569  Sum_probs=20.2

Q ss_pred             eeCChhhHhhhchHHHHHhhhc
Q psy12265         49 FQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        49 ~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      |.|..|+..|.....++.|++.
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s   22 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRS   22 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTT
T ss_pred             CCCCCCCCCcCCHHHHHHHHCc
Confidence            6799999999999999999875

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=97.17  E-value=0.00016  Score=24.69  Aligned_cols=21  Identities=14%  Similarity=0.331  Sum_probs=10.9

Q ss_pred             eeCChhhHhhhchHHHHHhhhc
Q psy12265         49 FQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        49 ~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      |+|+.|+.... ...|..|++.
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~   21 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKR   21 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHh
Confidence            45666665555 5566666543

>smart00451 ZnF_U1 U1-like zinc finger

Probab=97.03  E-value=0.00022  Score=26.47  Aligned_cols=20  Identities=20%  Similarity=0.489  Sum_probs=10.2

Q ss_pred             eecccccccccchhhHHHhH
Q psy12265         20 YGCEVCGRHFRQWGDLKYHK   39 (71)
Q Consensus        20 ~~c~~c~~~~~~~~~l~~h~   39 (71)
                      |.|..|+..|.....+..|+
T Consensus         4 ~~C~~C~~~~~~~~~~~~H~   23 (35)
T smart00451        4 FYCKLCNVTFTDEISVEAHL   23 (35)
T ss_pred             eEccccCCccCCHHHHHHHH
Confidence            45555555555554444443

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PRK04860 hypothetical protein; Provisional

Probab=96.46  E-value=0.0025  Score=31.94  Aligned_cols=29  Identities=34%  Similarity=0.575  Sum_probs=24.8

Q ss_pred             HHHHHHHhHhhCCCceecccccccccchh
Q psy12265          5 TYLKVHNRVHLGLKPYGCEVCGRHFRQWG   33 (71)
Q Consensus         5 ~~l~~h~~~~~~~~~~~c~~c~~~~~~~~   33 (71)
                      ..+.+|.+++.++++|.|..|++.|....
T Consensus       129 ~~~rrH~ri~~g~~~YrC~~C~~~l~~~~  157 (160)
T PRK04860        129 LTVRRHNRVVRGEAVYRCRRCGETLVFKG  157 (160)
T ss_pred             CHHHHHHHHhcCCccEECCCCCceeEEec
Confidence            46788999999999999999998876543

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=96.31  E-value=0.004  Score=25.79  Aligned_cols=26  Identities=19%  Similarity=0.367  Sum_probs=19.5

Q ss_pred             cCCcCceeCChhhHhhhchHHHHHhh
Q psy12265         43 HSDVKAFQCEYCGKDFARKYQAHSYH   68 (71)
Q Consensus        43 ~~~~~~~~C~~c~~~f~~~~~l~~h~   68 (71)
                      ..|+.-++|+-|+..|....++.+|.
T Consensus        12 RDGE~~lrCPRC~~~FR~~K~Y~RHV   37 (65)
T COG4049          12 RDGEEFLRCPRCGMVFRRRKDYIRHV   37 (65)
T ss_pred             cCCceeeeCCchhHHHHHhHHHHHHh
Confidence            34666778888888888887777774

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=95.99  E-value=0.0043  Score=22.93  Aligned_cols=24  Identities=33%  Similarity=0.836  Sum_probs=16.4

Q ss_pred             eecccccccccchhhHHHhHhhhcCCcCceeCChhhH
Q psy12265         20 YGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGK   56 (71)
Q Consensus        20 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~   56 (71)
                      |.|..||..+...             ..++.|+.|+.
T Consensus         2 ~~C~~CGy~y~~~-------------~~~~~CP~Cg~   25 (33)
T cd00350           2 YVCPVCGYIYDGE-------------EAPWVCPVCGA   25 (33)
T ss_pred             EECCCCCCEECCC-------------cCCCcCcCCCC
Confidence            6788888554321             25788999975

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>KOG1146|consensus

Probab=95.86  E-value=0.004  Score=39.90  Aligned_cols=56  Identities=23%  Similarity=0.344  Sum_probs=45.1

Q ss_pred             hhCCCceecccccccccchhhHHHhHhhhc------------------------CCcCceeCChhhHhhhchHHHHHhhh
Q psy12265         14 HLGLKPYGCEVCGRHFRQWGDLKYHKASLH------------------------SDVKAFQCEYCGKDFARKYQAHSYHQ   69 (71)
Q Consensus        14 ~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~------------------------~~~~~~~C~~c~~~f~~~~~l~~h~~   69 (71)
                      +...+.++|..|+..|...+.|..|++..|                        .+-++|.|..|...+..+..|.+|+.
T Consensus       460 ~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~p~~C~~C~~stttng~Lsihlq  539 (1406)
T KOG1146|consen  460 HSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGKPYPCRACNYSTTTNGNLSIHLQ  539 (1406)
T ss_pred             ecccccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCCcccceeeeeeeecchHHHHHHH
Confidence            334478999999999999999999998522                        12346889999999999999999975

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=95.54  E-value=0.0024  Score=35.49  Aligned_cols=53  Identities=30%  Similarity=0.468  Sum_probs=42.3

Q ss_pred             CceecccccccccchhhHHHhHhh-hcCCc--CceeCC--hhhHhhhchHHHHHhhhc
Q psy12265         18 KPYGCEVCGRHFRQWGDLKYHKAS-LHSDV--KAFQCE--YCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        18 ~~~~c~~c~~~~~~~~~l~~h~~~-~~~~~--~~~~C~--~c~~~f~~~~~l~~h~~~   70 (71)
                      .++.|..|...|.....+..|.+. .|.++  +++.|+  .|++.|.....+..|..+
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  345 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILL  345 (467)
T ss_pred             cCCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCccc
Confidence            367888888888888888888763 58888  888888  699888888887777543

>KOG2893|consensus

Probab=95.39  E-value=0.0049  Score=32.89  Aligned_cols=42  Identities=26%  Similarity=0.396  Sum_probs=30.1

Q ss_pred             ecccccccccchhhHHHhHhhhcCCcCceeCChhhHhhhchHHHHHh
Q psy12265         21 GCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHSY   67 (71)
Q Consensus        21 ~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h   67 (71)
                      .|..|..-|....-|++|+.     .+.|+|-+|-+..-.--.|.+|
T Consensus        12 wcwycnrefddekiliqhqk-----akhfkchichkkl~sgpglsih   53 (341)
T KOG2893|consen   12 WCWYCNREFDDEKILIQHQK-----AKHFKCHICHKKLFSGPGLSIH   53 (341)
T ss_pred             eeeecccccchhhhhhhhhh-----hccceeeeehhhhccCCCceee
Confidence            57789999999888888876     5678999997654433344433

>TIGR00373 conserved hypothetical protein TIGR00373

Probab=95.33  E-value=0.022  Score=28.52  Aligned_cols=33  Identities=18%  Similarity=0.284  Sum_probs=25.2

Q ss_pred             hCCCceecccccccccchhhHHHhHhhhcCCcCceeCChhhHh
Q psy12265         15 LGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKD   57 (71)
Q Consensus        15 ~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~   57 (71)
                      ....-|.|+.|+..|+...++.          .-|.|+.||..
T Consensus       105 ~~~~~Y~Cp~c~~r~tf~eA~~----------~~F~Cp~Cg~~  137 (158)
T TIGR00373       105 TNNMFFICPNMCVRFTFNEAME----------LNFTCPRCGAM  137 (158)
T ss_pred             cCCCeEECCCCCcEeeHHHHHH----------cCCcCCCCCCE
Confidence            3445699999999988776653          25899999864

This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=95.27  E-value=0.0067  Score=28.55  Aligned_cols=32  Identities=25%  Similarity=0.697  Sum_probs=21.9

Q ss_pred             CceecccccccccchhhHHHhHhhhcCCcCceeCChhhHhhhch
Q psy12265         18 KPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARK   61 (71)
Q Consensus        18 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f~~~   61 (71)
                      ....|..||..|--            .+..|..|++||..|.-.
T Consensus         8 tKR~Cp~CG~kFYD------------Lnk~PivCP~CG~~~~~~   39 (108)
T PF09538_consen    8 TKRTCPSCGAKFYD------------LNKDPIVCPKCGTEFPPE   39 (108)
T ss_pred             CcccCCCCcchhcc------------CCCCCccCCCCCCccCcc
Confidence            34688889877632            223577899999877644

The function of members of this family is unknown.

>COG1592 Rubrerythrin [Energy production and conversion]

Probab=95.13  E-value=0.011  Score=29.82  Aligned_cols=25  Identities=36%  Similarity=0.793  Sum_probs=19.4

Q ss_pred             CceecccccccccchhhHHHhHhhhcCCcCceeCChhhH
Q psy12265         18 KPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGK   56 (71)
Q Consensus        18 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~   56 (71)
                      +.|.|..||..              +-++.|..||+||.
T Consensus       133 ~~~vC~vCGy~--------------~~ge~P~~CPiCga  157 (166)
T COG1592         133 KVWVCPVCGYT--------------HEGEAPEVCPICGA  157 (166)
T ss_pred             CEEEcCCCCCc--------------ccCCCCCcCCCCCC
Confidence            36999999733              44588899999983

>smart00531 TFIIE Transcription initiation factor IIE

Probab=95.12  E-value=0.049  Score=26.91  Aligned_cols=38  Identities=21%  Similarity=0.519  Sum_probs=25.5

Q ss_pred             CCCceecccccccccchhhHHHhHhhhcCCcCceeCChhhHhh
Q psy12265         16 GLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDF   58 (71)
Q Consensus        16 ~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f   58 (71)
                      ...-|.|+.|+..|+....+..    ... ...|.|+.||...
T Consensus        96 ~~~~Y~Cp~C~~~y~~~ea~~~----~d~-~~~f~Cp~Cg~~l  133 (147)
T smart00531       96 NNAYYKCPNCQSKYTFLEANQL----LDM-DGTFTCPRCGEEL  133 (147)
T ss_pred             CCcEEECcCCCCEeeHHHHHHh----cCC-CCcEECCCCCCEE
Confidence            3456999999999886544322    122 3349999999754

>PF13719 zinc_ribbon_5: zinc-ribbon domain

Probab=94.70  E-value=0.022  Score=21.58  Aligned_cols=34  Identities=29%  Similarity=0.604  Sum_probs=23.3

Q ss_pred             eecccccccccchhhHHHhHhhhcCCcCceeCChhhHhhh
Q psy12265         20 YGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFA   59 (71)
Q Consensus        20 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f~   59 (71)
                      ..|+.|+..|.-..+-      ...+....+|+.|+..|.
T Consensus         3 i~CP~C~~~f~v~~~~------l~~~~~~vrC~~C~~~f~   36 (37)
T PF13719_consen    3 ITCPNCQTRFRVPDDK------LPAGGRKVRCPKCGHVFR   36 (37)
T ss_pred             EECCCCCceEEcCHHH------cccCCcEEECCCCCcEee
Confidence            4788999888766542      233345679999987764

>PRK06266 transcription initiation factor E subunit alpha; Validated

Probab=94.67  E-value=0.037  Score=28.29  Aligned_cols=32  Identities=22%  Similarity=0.455  Sum_probs=24.1

Q ss_pred             CCCceecccccccccchhhHHHhHhhhcCCcCceeCChhhHh
Q psy12265         16 GLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKD   57 (71)
Q Consensus        16 ~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~   57 (71)
                      ...-|.|+.|+..|+...++.          .-|.|+.||..
T Consensus       114 ~~~~Y~Cp~C~~rytf~eA~~----------~~F~Cp~Cg~~  145 (178)
T PRK06266        114 NNMFFFCPNCHIRFTFDEAME----------YGFRCPQCGEM  145 (178)
T ss_pred             CCCEEECCCCCcEEeHHHHhh----------cCCcCCCCCCC
Confidence            345699999999988766532          25899999864

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=94.61  E-value=0.041  Score=24.76  Aligned_cols=23  Identities=30%  Similarity=0.680  Sum_probs=20.4

Q ss_pred             ceecccccccccchhhHHHhHhh
Q psy12265         19 PYGCEVCGRHFRQWGDLKYHKAS   41 (71)
Q Consensus        19 ~~~c~~c~~~~~~~~~l~~h~~~   41 (71)
                      .+.|..|+..|.+...|..|+..
T Consensus        50 ~~~C~~C~~~f~s~~~l~~Hm~~   72 (100)
T PF12756_consen   50 SFRCPYCNKTFRSREALQEHMRS   72 (100)
T ss_dssp             SEEBSSSS-EESSHHHHHHHHHH
T ss_pred             CCCCCccCCCCcCHHHHHHHHcC
Confidence            59999999999999999999984

>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain

Probab=94.40  E-value=0.027  Score=21.25  Aligned_cols=34  Identities=21%  Similarity=0.453  Sum_probs=22.2

Q ss_pred             eecccccccccchhhHHHhHhhhcCCcCceeCChhhHhhh
Q psy12265         20 YGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFA   59 (71)
Q Consensus        20 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f~   59 (71)
                      ..|+.|+..|.-..+..      ........|+.|+..|.
T Consensus         3 ~~CP~C~~~~~v~~~~~------~~~~~~v~C~~C~~~~~   36 (38)
T TIGR02098         3 IQCPNCKTSFRVVDSQL------GANGGKVRCGKCGHVWY   36 (38)
T ss_pred             EECCCCCCEEEeCHHHc------CCCCCEEECCCCCCEEE
Confidence            57899998876654421      22223578999987664

This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.

>PF13717 zinc_ribbon_4: zinc-ribbon domain

Probab=94.18  E-value=0.04  Score=20.75  Aligned_cols=33  Identities=18%  Similarity=0.528  Sum_probs=22.7

Q ss_pred             eecccccccccchhhHHHhHhhhcCCcCceeCChhhHhh
Q psy12265         20 YGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDF   58 (71)
Q Consensus        20 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f   58 (71)
                      ..|+.|+..|.-....      ........+|+.|+..|
T Consensus         3 i~Cp~C~~~y~i~d~~------ip~~g~~v~C~~C~~~f   35 (36)
T PF13717_consen    3 ITCPNCQAKYEIDDEK------IPPKGRKVRCSKCGHVF   35 (36)
T ss_pred             EECCCCCCEEeCCHHH------CCCCCcEEECCCCCCEe
Confidence            5788898888766542      23334467899998766

>KOG2186|consensus

Probab=93.96  E-value=0.036  Score=29.86  Aligned_cols=38  Identities=32%  Similarity=0.749  Sum_probs=17.0

Q ss_pred             eecccccccccchhhHHHhHhhhcCCcCceeCChhhHhhhc
Q psy12265         20 YGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFAR   60 (71)
Q Consensus        20 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f~~   60 (71)
                      |.|..||.... +..+.+|+. ...+ ..|.|.-|+..|..
T Consensus         4 FtCnvCgEsvK-Kp~vekH~s-rCrn-~~fSCIDC~k~F~~   41 (276)
T KOG2186|consen    4 FTCNVCGESVK-KPQVEKHMS-RCRN-AYFSCIDCGKTFER   41 (276)
T ss_pred             Eehhhhhhhcc-ccchHHHHH-hccC-CeeEEeeccccccc
Confidence            44555554432 233444543 2333 34555555555544

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=93.54  E-value=0.016  Score=30.37  Aligned_cols=44  Identities=23%  Similarity=0.366  Sum_probs=27.0

Q ss_pred             CCceecccccccccchhhHHHhHhh---------hcCCcCc-----eeCChhhHhhhc
Q psy12265         17 LKPYGCEVCGRHFRQWGDLKYHKAS---------LHSDVKA-----FQCEYCGKDFAR   60 (71)
Q Consensus        17 ~~~~~c~~c~~~~~~~~~l~~h~~~---------~~~~~~~-----~~C~~c~~~f~~   60 (71)
                      ++...|+.|+..|..+.-.....+.         ...+..|     ..|+.||..+..
T Consensus         3 ~k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~   60 (214)
T PF09986_consen    3 DKKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFE   60 (214)
T ss_pred             CCceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCcccc
Confidence            4678999999998766443332221         1122333     479999976553

>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]

Probab=93.24  E-value=0.1  Score=21.95  Aligned_cols=32  Identities=19%  Similarity=0.392  Sum_probs=19.0

Q ss_pred             ceecccccccccchhhHHHhHhhhcCCcCceeCChhhH
Q psy12265         19 PYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGK   56 (71)
Q Consensus        19 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~   56 (71)
                      .|.|+.||........-      -.....+|.|+.||.
T Consensus        27 ~F~CPnCGe~~I~Rc~~------CRk~g~~Y~Cp~CGF   58 (61)
T COG2888          27 KFPCPNCGEVEIYRCAK------CRKLGNPYRCPKCGF   58 (61)
T ss_pred             EeeCCCCCceeeehhhh------HHHcCCceECCCcCc
Confidence            47888888554433221      122356889988874

>KOG1146|consensus

Probab=93.16  E-value=0.058  Score=35.13  Aligned_cols=54  Identities=17%  Similarity=0.208  Sum_probs=42.0

Q ss_pred             CCCceecccccccccchhhHHHhHhh----------------hcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265         16 GLKPYGCEVCGRHFRQWGDLKYHKAS----------------LHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        16 ~~~~~~c~~c~~~~~~~~~l~~h~~~----------------~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      .+.+|.|..|...|.....+..|.+.                .+....+| |..|...|+....|++|++.
T Consensus      1281 ~~~~~~~~~~~~~~~~~~~l~~~~~k~~~~~~~~~~~~~~~l~~~d~~~~-c~~c~~~~~~~~alqihm~~ 1350 (1406)
T KOG1146|consen 1281 VTHRYLCRQCKMAFDGEAPLTAHQRKFCFAGRGSGGSMPPPLRVPDCTYH-CLACEVLLSGREALQIHMRS 1350 (1406)
T ss_pred             cchhHHHHHHHhhhcchhHHHHHHHHHHhccCccccCCCCcccCcccccc-chHHHhhcchhHHHHHHHHH
Confidence            34678999999999999888888753                11222345 99999999999999999874

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=93.04  E-value=0.028  Score=31.33  Aligned_cols=24  Identities=46%  Similarity=1.081  Sum_probs=21.1

Q ss_pred             CCCceecccccccccchhhHHHhH
Q psy12265         16 GLKPYGCEVCGRHFRQWGDLKYHK   39 (71)
Q Consensus        16 ~~~~~~c~~c~~~~~~~~~l~~h~   39 (71)
                      ..+||.|+.|++.|.....|+-|.
T Consensus       395 ~~KPYrCevC~KRYKNlNGLKYHr  418 (423)
T COG5189         395 KDKPYRCEVCDKRYKNLNGLKYHR  418 (423)
T ss_pred             cCCceeccccchhhccCccceecc
Confidence            459999999999999988888885

>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase

Probab=92.72  E-value=0.076  Score=19.73  Aligned_cols=25  Identities=28%  Similarity=0.708  Sum_probs=16.5

Q ss_pred             ceecccccccccchhhHHHhHhhhcCCcCceeCChhhH
Q psy12265         19 PYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGK   56 (71)
Q Consensus        19 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~   56 (71)
                      .|.|..||..+..             .+.|..|+.|+.
T Consensus         2 ~~~C~~CG~i~~g-------------~~~p~~CP~Cg~   26 (34)
T cd00729           2 VWVCPVCGYIHEG-------------EEAPEKCPICGA   26 (34)
T ss_pred             eEECCCCCCEeEC-------------CcCCCcCcCCCC
Confidence            4788999855321             124668999975

In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional

Probab=92.69  E-value=0.11  Score=20.48  Aligned_cols=31  Identities=29%  Similarity=0.665  Sum_probs=20.2

Q ss_pred             CceecccccccccchhhHHHhHhhhcCCcCceeCChhhHhhh
Q psy12265         18 KPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFA   59 (71)
Q Consensus        18 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f~   59 (71)
                      ..|.|..|+..+.....           ...+.|+.||..+.
T Consensus         2 ~~y~C~~CG~~~~~~~~-----------~~~~~Cp~CG~~~~   32 (46)
T PRK00398          2 AEYKCARCGREVELDEY-----------GTGVRCPYCGYRIL   32 (46)
T ss_pred             CEEECCCCCCEEEECCC-----------CCceECCCCCCeEE
Confidence            35889999877653211           11678999986543

>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300

Probab=92.54  E-value=0.054  Score=26.24  Aligned_cols=32  Identities=19%  Similarity=0.362  Sum_probs=21.2

Q ss_pred             CceecccccccccchhhHHHhHhhhcCCcCceeCChhhHhhhch
Q psy12265         18 KPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARK   61 (71)
Q Consensus        18 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f~~~   61 (71)
                      ....|..|+..|-            -.+..|..|++||..|.-.
T Consensus         8 tKr~Cp~cg~kFY------------DLnk~p~vcP~cg~~~~~~   39 (129)
T TIGR02300         8 TKRICPNTGSKFY------------DLNRRPAVSPYTGEQFPPE   39 (129)
T ss_pred             ccccCCCcCcccc------------ccCCCCccCCCcCCccCcc
Confidence            3467888887763            2224577889998876544

Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.

>smart00659 RPOLCX RNA polymerase subunit CX

Probab=92.28  E-value=0.12  Score=20.36  Aligned_cols=27  Identities=30%  Similarity=0.624  Sum_probs=18.5

Q ss_pred             ceecccccccccchhhHHHhHhhhcCCcCceeCChhhHh
Q psy12265         19 PYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKD   57 (71)
Q Consensus        19 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~   57 (71)
                      .|.|..|+..+...            ...+.+|+.||..
T Consensus         2 ~Y~C~~Cg~~~~~~------------~~~~irC~~CG~r   28 (44)
T smart00659        2 IYICGECGRENEIK------------SKDVVRCRECGYR   28 (44)
T ss_pred             EEECCCCCCEeecC------------CCCceECCCCCce
Confidence            47899998766532            2345789999864

present in RNA polymerase I, II and III

>KOG2593|consensus

Probab=92.20  E-value=0.16  Score=29.43  Aligned_cols=38  Identities=26%  Similarity=0.707  Sum_probs=26.7

Q ss_pred             hCCCceecccccccccchhhHHHhHhhhcCCcCceeCChhhH
Q psy12265         15 LGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGK   56 (71)
Q Consensus        15 ~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~   56 (71)
                      +...-|.|+.|.+.|+....+..    .....-.|.|..|+-
T Consensus       124 t~~~~Y~Cp~C~kkyt~Lea~~L----~~~~~~~F~C~~C~g  161 (436)
T KOG2593|consen  124 TNVAGYVCPNCQKKYTSLEALQL----LDNETGEFHCENCGG  161 (436)
T ss_pred             cccccccCCccccchhhhHHHHh----hcccCceEEEecCCC
Confidence            34566999999999987766542    233344699998863

>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria

Probab=92.07  E-value=0.066  Score=20.81  Aligned_cols=29  Identities=31%  Similarity=0.815  Sum_probs=19.8

Q ss_pred             eecccccccccchhhHHHhHhhhcCCcCceeCChhhH
Q psy12265         20 YGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGK   56 (71)
Q Consensus        20 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~   56 (71)
                      |.|..|+..|.....       ... ..+..|+.||.
T Consensus         6 y~C~~Cg~~fe~~~~-------~~~-~~~~~CP~Cg~   34 (42)
T PF09723_consen    6 YRCEECGHEFEVLQS-------ISE-DDPVPCPECGS   34 (42)
T ss_pred             EEeCCCCCEEEEEEE-------cCC-CCCCcCCCCCC
Confidence            789999988864332       122 44568999986

The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>KOG2893|consensus

Probab=91.63  E-value=0.062  Score=28.92  Aligned_cols=25  Identities=20%  Similarity=0.525  Sum_probs=21.7

Q ss_pred             cCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         46 VKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        46 ~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      .++| |.+|++.|.....|.+|++.+
T Consensus         9 ~kpw-cwycnrefddekiliqhqkak   33 (341)
T KOG2893|consen    9 DKPW-CWYCNREFDDEKILIQHQKAK   33 (341)
T ss_pred             CCce-eeecccccchhhhhhhhhhhc
Confidence            4566 899999999999999999864

>KOG3408|consensus

Probab=91.60  E-value=0.22  Score=24.05  Aligned_cols=24  Identities=17%  Similarity=0.397  Sum_probs=20.0

Q ss_pred             ceeCChhhHhhhchHHHHHhhhcC
Q psy12265         48 AFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        48 ~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      .|.|..|.+.|.....|..|.+.+
T Consensus        57 qfyCi~CaRyFi~~~~l~~H~ktK   80 (129)
T KOG3408|consen   57 QFYCIECARYFIDAKALKTHFKTK   80 (129)
T ss_pred             eeehhhhhhhhcchHHHHHHHhcc
Confidence            478999999999999999887753

>PRK00464 nrdR transcriptional regulator NrdR; Validated

Probab=91.25  E-value=0.036  Score=27.76  Aligned_cols=14  Identities=36%  Similarity=0.702  Sum_probs=10.4

Q ss_pred             ceeCChhhHhhhch
Q psy12265         48 AFQCEYCGKDFARK   61 (71)
Q Consensus        48 ~~~C~~c~~~f~~~   61 (71)
                      .++|+.||.+|...
T Consensus        28 ~~~c~~c~~~f~~~   41 (154)
T PRK00464         28 RRECLACGKRFTTF   41 (154)
T ss_pred             eeeccccCCcceEe
Confidence            37888888888643

>KOG2785|consensus

Probab=91.16  E-value=0.23  Score=28.37  Aligned_cols=24  Identities=25%  Similarity=0.411  Sum_probs=17.3

Q ss_pred             CceeCChhhHhhhchHHHHHhhhc
Q psy12265         47 KAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        47 ~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      .++.|..|.+.|...-....|++.
T Consensus        67 ~~~~c~~c~k~~~s~~a~~~hl~S   90 (390)
T KOG2785|consen   67 SVVYCEACNKSFASPKAHENHLKS   90 (390)
T ss_pred             cceehHHhhccccChhhHHHHHHH
Confidence            456778888888777777777654

>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species

Probab=90.98  E-value=0.072  Score=18.32  Aligned_cols=11  Identities=36%  Similarity=0.905  Sum_probs=7.6

Q ss_pred             cCceeCChhhH
Q psy12265         46 VKAFQCEYCGK   56 (71)
Q Consensus        46 ~~~~~C~~c~~   56 (71)
                      ..+|.|+.||+
T Consensus        14 ~v~f~CPnCG~   24 (24)
T PF07754_consen   14 AVPFPCPNCGF   24 (24)
T ss_pred             CceEeCCCCCC
Confidence            34688888873

It is likely to bind zinc via its four well-conserved cysteine residues.

>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=90.88  E-value=0.14  Score=19.87  Aligned_cols=20  Identities=25%  Similarity=0.516  Sum_probs=8.1

Q ss_pred             eeCChhhHhhhch----HHHHHhh
Q psy12265         49 FQCEYCGKDFARK----YQAHSYH   68 (71)
Q Consensus        49 ~~C~~c~~~f~~~----~~l~~h~   68 (71)
                      ..|..|++.+...    +.|..|+
T Consensus        17 a~C~~C~~~~~~~~~~ts~l~~HL   40 (45)
T PF02892_consen   17 AKCKYCGKVIKYSSGGTSNLKRHL   40 (45)
T ss_dssp             EEETTTTEE-----SSTHHHHHHH
T ss_pred             EEeCCCCeEEeeCCCcHHHHHHhh
Confidence            4455555444332    4455554

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.

>KOG4167|consensus

Probab=90.79  E-value=0.11  Score=32.21  Aligned_cols=24  Identities=25%  Similarity=0.510  Sum_probs=21.0

Q ss_pred             ceeCChhhHhhhchHHHHHhhhcC
Q psy12265         48 AFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        48 ~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      -|.|..|++.|-....+.-||+++
T Consensus       792 iFpCreC~kvF~KiKSrNAHMK~H  815 (907)
T KOG4167|consen  792 IFPCRECGKVFFKIKSRNAHMKTH  815 (907)
T ss_pred             eeehHHHHHHHHHHhhhhHHHHHH
Confidence            389999999999999999998864

>PF15269 zf-C2H2_7: Zinc-finger

Probab=90.69  E-value=0.12  Score=20.51  Aligned_cols=21  Identities=14%  Similarity=0.295  Sum_probs=15.2

Q ss_pred             eeCChhhHhhhchHHHHHhhh
Q psy12265         49 FQCEYCGKDFARKYQAHSYHQ   69 (71)
Q Consensus        49 ~~C~~c~~~f~~~~~l~~h~~   69 (71)
                      |+|-.|+.+...++.|-.||+
T Consensus        21 ykcfqcpftc~~kshl~nhmk   41 (54)
T PF15269_consen   21 YKCFQCPFTCNEKSHLFNHMK   41 (54)
T ss_pred             ceeecCCcccchHHHHHHHHH
Confidence            467777777777777777775

>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger

Probab=90.66  E-value=0.15  Score=17.76  Aligned_cols=18  Identities=22%  Similarity=0.375  Sum_probs=9.3

Q ss_pred             eCChhhHhhhchHHHHHhh
Q psy12265         50 QCEYCGKDFARKYQAHSYH   68 (71)
Q Consensus        50 ~C~~c~~~f~~~~~l~~h~   68 (71)
                      .|++|++.+ ....+..|.
T Consensus         3 ~CPiC~~~v-~~~~in~HL   20 (26)
T smart00734        3 QCPVCFREV-PENLINSHL   20 (26)
T ss_pred             cCCCCcCcc-cHHHHHHHH
Confidence            466666555 334444443

Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.

>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []

Probab=90.55  E-value=0.068  Score=28.18  Aligned_cols=25  Identities=20%  Similarity=0.299  Sum_probs=14.7

Q ss_pred             cCceeCChhhHhhhchHHHHHhhhc
Q psy12265         46 VKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        46 ~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      +..|.|+.|++.|.-..-+..|+..
T Consensus        75 ~~K~~C~lc~KlFkg~eFV~KHI~n   99 (214)
T PF04959_consen   75 EDKWRCPLCGKLFKGPEFVRKHIFN   99 (214)
T ss_dssp             SEEEEE-SSS-EESSHHHHHHHHHH
T ss_pred             CCEECCCCCCcccCChHHHHHHHhh
Confidence            3446777777777766666666643

Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.

>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family

Probab=90.39  E-value=0.072  Score=21.47  Aligned_cols=29  Identities=28%  Similarity=0.732  Sum_probs=19.1

Q ss_pred             eecccccccccchhhHHHhHhhhcCCcCceeCChhhH
Q psy12265         20 YGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGK   56 (71)
Q Consensus        20 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~   56 (71)
                      |.|..|+..|.....       ... ..+-.|+.||.
T Consensus         6 y~C~~Cg~~fe~~~~-------~~~-~~~~~CP~Cg~   34 (52)
T TIGR02605         6 YRCTACGHRFEVLQK-------MSD-DPLATCPECGG   34 (52)
T ss_pred             EEeCCCCCEeEEEEe-------cCC-CCCCCCCCCCC
Confidence            789999988874422       121 34457999985

This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=90.38  E-value=0.057  Score=30.14  Aligned_cols=49  Identities=33%  Similarity=0.593  Sum_probs=39.0

Q ss_pred             ChHHHHHHHh--HhhCC--Cceecc--cccccccchhhHHHhHhhhcCCcCceeCC
Q psy12265          3 KFTYLKVHNR--VHLGL--KPYGCE--VCGRHFRQWGDLKYHKASLHSDVKAFQCE   52 (71)
Q Consensus         3 ~~~~l~~h~~--~~~~~--~~~~c~--~c~~~~~~~~~l~~h~~~~~~~~~~~~C~   52 (71)
                      ....+..|.+  .|.++  +++.|.  .|++.|.....+..|.. .|.+..++.+.
T Consensus       301 ~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  355 (467)
T COG5048         301 RSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHIL-LHTSISPAKEK  355 (467)
T ss_pred             ccccccccccccccccccCCceeeeccCCCccccccccccCCcc-cccCCCccccc
Confidence            3455667777  78889  999999  79999999999999987 67777666553

>PF13451 zf-trcl: Probable zinc-binding domain

Probab=90.09  E-value=0.62  Score=18.90  Aligned_cols=41  Identities=22%  Similarity=0.319  Sum_probs=23.1

Q ss_pred             CCceecccccccccchhhHHHhHhhhcCCcCceeCChhhHh
Q psy12265         17 LKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKD   57 (71)
Q Consensus        17 ~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~   57 (71)
                      ++++.|..||..|.-.+.=+..-....-...|-+|+.|-..
T Consensus         2 Dk~l~C~dCg~~FvfTa~EQ~fy~eKgf~n~p~RC~~CR~~   42 (49)
T PF13451_consen    2 DKTLTCKDCGAEFVFTAGEQKFYAEKGFDNEPKRCPSCRQA   42 (49)
T ss_pred             CeeEEcccCCCeEEEehhHHHHHHhcCCcCCCccCHHHHHH
Confidence            46789999998776543322111101112346788888643

>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]

Probab=89.99  E-value=0.19  Score=20.38  Aligned_cols=29  Identities=31%  Similarity=0.943  Sum_probs=19.3

Q ss_pred             CceecccccccccchhhHHHhHhhhcCCcCceeCChhhHh
Q psy12265         18 KPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKD   57 (71)
Q Consensus        18 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~   57 (71)
                      ..|.|..|+..+..           -......+|+.||..
T Consensus         5 ~~Y~C~~Cg~~~~~-----------~~~~~~irCp~Cg~r   33 (49)
T COG1996           5 MEYKCARCGREVEL-----------DQETRGIRCPYCGSR   33 (49)
T ss_pred             EEEEhhhcCCeeeh-----------hhccCceeCCCCCcE
Confidence            45899999988721           112345689999854

>KOG2482|consensus

Probab=89.53  E-value=0.14  Score=28.97  Aligned_cols=67  Identities=16%  Similarity=0.317  Sum_probs=41.4

Q ss_pred             HHHHHHHhHhhC-CCceeccccccccc-chhhHHHhHhhhcC---Cc------------------CceeCChhhHhhhch
Q psy12265          5 TYLKVHNRVHLG-LKPYGCEVCGRHFR-QWGDLKYHKASLHS---DV------------------KAFQCEYCGKDFARK   61 (71)
Q Consensus         5 ~~l~~h~~~~~~-~~~~~c~~c~~~~~-~~~~l~~h~~~~~~---~~------------------~~~~C~~c~~~f~~~   61 (71)
                      ..|.++++...+ .....|-.|..-+. ..+.+..|+...|.   |.                  ..+.|.+|.+.|..+
T Consensus       129 eaLeqqQ~Eredt~fslqClFCn~e~lgnRs~~l~Hlf~~H~lniGlpDniVyvnelLehLkekL~r~~CLyCekifrdk  208 (423)
T KOG2482|consen  129 EALEQQQKEREDTIFSLQCLFCNNEGLGNRSEILEHLFHVHGLNIGLPDNIVYVNELLEHLKEKLERLRCLYCEKIFRDK  208 (423)
T ss_pred             HHHHHHHHHhcCCeeeeEEEEecchhcccHHHHHHHHHHHhhhccCCCcceeeHHHHHHHHHHHHhhheeeeeccccCCc
Confidence            345555554422 23467888875433 33555555532221   11                  125899999999999


Q ss_pred             HHHHHhhhcC
Q psy12265         62 YQAHSYHQIR   71 (71)
Q Consensus        62 ~~l~~h~~~~   71 (71)
                      ..|..||+-|
T Consensus       209 ntLkeHMrkK  218 (423)
T KOG2482|consen  209 NTLKEHMRKK  218 (423)
T ss_pred             HHHHHHHHhc
Confidence            9999999754

>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional

Probab=88.18  E-value=0.52  Score=19.87  Aligned_cols=32  Identities=19%  Similarity=0.504  Sum_probs=16.9

Q ss_pred             ceecccccccccchhhHHHhHhhhcCCcCceeCChhhH
Q psy12265         19 PYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGK   56 (71)
Q Consensus        19 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~   56 (71)
                      .|.|+.||........-      -.....+|.|+.||.
T Consensus        25 ~F~CPnCG~~~I~RC~~------CRk~~~~Y~CP~CGF   56 (59)
T PRK14890         25 KFLCPNCGEVIIYRCEK------CRKQSNPYTCPKCGF   56 (59)
T ss_pred             EeeCCCCCCeeEeechh------HHhcCCceECCCCCC
Confidence            47777777542222111      112245788888874

>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2

Probab=87.89  E-value=0.14  Score=19.28  Aligned_cols=32  Identities=22%  Similarity=0.585  Sum_probs=17.0

Q ss_pred             eecccccccccchhhHHHhHhhhcCCcCceeCChhhHhhhc
Q psy12265         20 YGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFAR   60 (71)
Q Consensus        20 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f~~   60 (71)
                      ..|..|+..|-        .. ..+....-.|..||..+.+
T Consensus         2 r~C~~Cg~~Yh--------~~-~~pP~~~~~Cd~cg~~L~q   33 (36)
T PF05191_consen    2 RICPKCGRIYH--------IE-FNPPKVEGVCDNCGGELVQ   33 (36)
T ss_dssp             EEETTTTEEEE--------TT-TB--SSTTBCTTTTEBEBE
T ss_pred             cCcCCCCCccc--------cc-cCCCCCCCccCCCCCeeEe
Confidence            35777777653        22 2333444567777765443

7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....

>PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A

Probab=87.06  E-value=1.3  Score=18.08  Aligned_cols=44  Identities=20%  Similarity=0.492  Sum_probs=24.3

Q ss_pred             CCCceeccc-ccccccchhhHHHhHhhhcCCcCceeCCh----hhHhhhc
Q psy12265         16 GLKPYGCEV-CGRHFRQWGDLKYHKASLHSDVKAFQCEY----CGKDFAR   60 (71)
Q Consensus        16 ~~~~~~c~~-c~~~~~~~~~l~~h~~~~~~~~~~~~C~~----c~~~f~~   60 (71)
                      ...+..|+. |...-.....|..|.. ..-...+..|++    |+..+..
T Consensus         6 ~~~~v~C~~~cc~~~i~r~~l~~H~~-~~C~~~~v~C~~~~~GC~~~~~~   54 (60)
T PF02176_consen    6 PFRPVPCPNGCCNEMIPRKELDDHLE-NECPKRPVPCPYSPYGCKERVPR   54 (60)
T ss_dssp             TTSEEE-TT--S-BEEECCCHHHHHH-TTSTTSEEE-SS----S--EEEH
T ss_pred             CCCEeeCCCCCcccceeHHHHHHHHH-ccCCCCcEECCCCCCCCCCccch
Confidence            345667776 3333344678889976 344566788998    8776543

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines

Probab=86.89  E-value=0.14  Score=17.85  Aligned_cols=10  Identities=50%  Similarity=1.129  Sum_probs=7.5

Q ss_pred             eCChhhHhhh
Q psy12265         50 QCEYCGKDFA   59 (71)
Q Consensus        50 ~C~~c~~~f~   59 (71)
                      .|+.||..|.
T Consensus        16 ~Cp~CG~~F~   25 (26)
T PF10571_consen   16 FCPHCGYDFE   25 (26)
T ss_pred             cCCCCCCCCc
Confidence            6888887774

Several members are annotated as putative helicases.

>PHA00626 hypothetical protein

Probab=86.59  E-value=0.26  Score=20.51  Aligned_cols=17  Identities=18%  Similarity=0.477  Sum_probs=13.3

Q ss_pred             cCceeCChhhHhhhchH
Q psy12265         46 VKAFQCEYCGKDFARKY   62 (71)
Q Consensus        46 ~~~~~C~~c~~~f~~~~   62 (71)
                      ...|.|+.||..|...+
T Consensus        21 snrYkCkdCGY~ft~~~   37 (59)
T PHA00626         21 SDDYVCCDCGYNDSKDA   37 (59)
T ss_pred             CcceEcCCCCCeechhh
Confidence            56799999998877543

>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

Probab=86.20  E-value=0.59  Score=17.15  Aligned_cols=27  Identities=26%  Similarity=0.698  Sum_probs=15.0

Q ss_pred             eecccccccccchhhHHHhHhhhcCCcCceeCChhhHhh
Q psy12265         20 YGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDF   58 (71)
Q Consensus        20 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f   58 (71)
                      |.|..|+..+..           . ...+.+|+.||...
T Consensus         1 Y~C~~Cg~~~~~-----------~-~~~~irC~~CG~RI   27 (32)
T PF03604_consen    1 YICGECGAEVEL-----------K-PGDPIRCPECGHRI   27 (32)
T ss_dssp             EBESSSSSSE-B-----------S-TSSTSSBSSSS-SE
T ss_pred             CCCCcCCCeeEc-----------C-CCCcEECCcCCCeE
Confidence            567777765431           1 12356888888643

Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....

>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=85.55  E-value=0.33  Score=19.01  Aligned_cols=16  Identities=25%  Similarity=0.663  Sum_probs=11.9

Q ss_pred             eCChhhHhhhchHHHH
Q psy12265         50 QCEYCGKDFARKYQAH   65 (71)
Q Consensus        50 ~C~~c~~~f~~~~~l~   65 (71)
                      .|+.|++.|..+..++
T Consensus        10 ~C~~C~rpf~WRKKW~   25 (42)
T PF10013_consen   10 ICPVCGRPFTWRKKWA   25 (42)
T ss_pred             cCcccCCcchHHHHHH
Confidence            5888888888766554

>smart00614 ZnF_BED BED zinc finger

Probab=85.23  E-value=1.2  Score=17.82  Aligned_cols=22  Identities=23%  Similarity=0.600  Sum_probs=16.1

Q ss_pred             ceecccccccccch-----hhHHHhHh
Q psy12265         19 PYGCEVCGRHFRQW-----GDLKYHKA   40 (71)
Q Consensus        19 ~~~c~~c~~~~~~~-----~~l~~h~~   40 (71)
                      --.|..|++.++..     +.|.+|+.
T Consensus        18 ~a~C~~C~~~l~~~~~~gTs~L~rHl~   44 (50)
T smart00614       18 RAKCKYCGKKLSRSSKGGTSNLRRHLR   44 (50)
T ss_pred             EEEecCCCCEeeeCCCCCcHHHHHHHH
Confidence            36788899877554     57888875

DNA-binding domain in chromatin-boundary-element-binding proteins and transposases

>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional

Probab=84.99  E-value=0.36  Score=23.67  Aligned_cols=15  Identities=20%  Similarity=0.523  Sum_probs=11.6

Q ss_pred             Cceecccccccccch
Q psy12265         18 KPYGCEVCGRHFRQW   32 (71)
Q Consensus        18 ~~~~c~~c~~~~~~~   32 (71)
                      ..+.|..|+..|...
T Consensus        69 ~~~~C~~CG~~~~~~   83 (135)
T PRK03824         69 AVLKCRNCGNEWSLK   83 (135)
T ss_pred             eEEECCCCCCEEecc
Confidence            348999999887654

>PF04780 DUF629: Protein of unknown function (DUF629); InterPro: IPR006865 This domain represents a region of several plant proteins of unknown function

Probab=84.67  E-value=0.91  Score=26.91  Aligned_cols=29  Identities=17%  Similarity=0.298  Sum_probs=24.7

Q ss_pred             CceecccccccccchhhHHHhHhhhcCCc
Q psy12265         18 KPYGCEVCGRHFRQWGDLKYHKASLHSDV   46 (71)
Q Consensus        18 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~   46 (71)
                      +-|.|+.|.+.|.....+..|+...|.+.
T Consensus        56 rFWiCp~CskkF~d~~~~~~H~~~eH~~~   84 (466)
T PF04780_consen   56 RFWICPRCSKKFSDAESCLSHMEQEHPAG   84 (466)
T ss_pred             eEeeCCcccceeCCHHHHHHHHHHhhhhh
Confidence            34899999999999999999998667654

A C2H2 zinc finger is predicted in this region in some family members, but the spacing between the cysteine residues is not conserved throughout the family.

>smart00834 CxxC_CXXC_SSSS Putative regulatory protein

Probab=84.20  E-value=0.24  Score=18.70  Aligned_cols=11  Identities=45%  Similarity=1.349  Sum_probs=7.9

Q ss_pred             eeCChhhHhhh
Q psy12265         49 FQCEYCGKDFA   59 (71)
Q Consensus        49 ~~C~~c~~~f~   59 (71)
                      |+|..||..|.
T Consensus         6 y~C~~Cg~~fe   16 (41)
T smart00834        6 YRCEDCGHTFE   16 (41)
T ss_pred             EEcCCCCCEEE
Confidence            67888877664

CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []

Probab=83.97  E-value=0.93  Score=24.10  Aligned_cols=29  Identities=21%  Similarity=0.456  Sum_probs=21.6

Q ss_pred             CCCceecccccccccchhhHHHhHhhhcC
Q psy12265         16 GLKPYGCEVCGRHFRQWGDLKYHKASLHS   44 (71)
Q Consensus        16 ~~~~~~c~~c~~~~~~~~~l~~h~~~~~~   44 (71)
                      .+..|.|..|++.|.-...+..|+..-|.
T Consensus        74 ~~~K~~C~lc~KlFkg~eFV~KHI~nKH~  102 (214)
T PF04959_consen   74 DEDKWRCPLCGKLFKGPEFVRKHIFNKHP  102 (214)
T ss_dssp             SSEEEEE-SSS-EESSHHHHHHHHHHH-H
T ss_pred             cCCEECCCCCCcccCChHHHHHHHhhcCH
Confidence            34569999999999999999999875453

Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.

>PF12907 zf-met2: Zinc-binding

Probab=83.90  E-value=0.28  Score=19.01  Aligned_cols=27  Identities=30%  Similarity=0.491  Sum_probs=15.6

Q ss_pred             eecccccccccch---hhHHHhHhhhcCCc
Q psy12265         20 YGCEVCGRHFRQW---GDLKYHKASLHSDV   46 (71)
Q Consensus        20 ~~c~~c~~~~~~~---~~l~~h~~~~~~~~   46 (71)
                      +.|.+|...|...   ..|..|-..-|+..
T Consensus         2 i~C~iC~qtF~~t~~~~~L~eH~enKHpK~   31 (40)
T PF12907_consen    2 IICKICRQTFMQTTNEPQLKEHAENKHPKN   31 (40)
T ss_pred             cCcHHhhHHHHhcCCHHHHHHHHHccCCCC
Confidence            4677787555433   44777765445443

>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins

Probab=83.84  E-value=0.99  Score=19.17  Aligned_cols=24  Identities=25%  Similarity=0.529  Sum_probs=15.8

Q ss_pred             CcCceeCChhhHhhhchHHHHHhh
Q psy12265         45 DVKAFQCEYCGKDFARKYQAHSYH   68 (71)
Q Consensus        45 ~~~~~~C~~c~~~f~~~~~l~~h~   68 (71)
                      ....|.|+.||........-...+
T Consensus        43 ~~r~~~C~~Cg~~~~rD~naA~NI   66 (69)
T PF07282_consen   43 SGRVFTCPNCGFEMDRDVNAARNI   66 (69)
T ss_pred             ccceEEcCCCCCEECcHHHHHHHH
Confidence            345789999998766554444443

More information about these proteins can be found at Protein of the Month: Transposase [].

>PF09963 DUF2197: Uncharacterized protein conserved in bacteria (DUF2197); InterPro: IPR019241 This family represents various hypothetical bacterial proteins with no known function

Probab=83.39  E-value=1.9  Score=18.05  Aligned_cols=42  Identities=10%  Similarity=0.320  Sum_probs=22.9

Q ss_pred             eecccccccccchh-hHHHhHhhhcCCcCceeCChhhHhhhchH
Q psy12265         20 YGCEVCGRHFRQWG-DLKYHKASLHSDVKAFQCEYCGKDFARKY   62 (71)
Q Consensus        20 ~~c~~c~~~~~~~~-~l~~h~~~~~~~~~~~~C~~c~~~f~~~~   62 (71)
                      ..|..|++.+.-.. .+..-.. ..-.-..|-|..|......+.
T Consensus         3 vkC~lCdk~~~Id~~~~~aKrL-rnrPi~tYmC~eC~~RI~~~t   45 (56)
T PF09963_consen    3 VKCILCDKKEEIDEDTPEAKRL-RNRPIHTYMCDECKERIREET   45 (56)
T ss_pred             eEEEecCCEEEeccCCHHHHHh-hcCCCcceeChhHHHHHhHHH
Confidence            36778887654332 2222212 233455689999977655443

>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]

Probab=83.34  E-value=1.9  Score=22.26  Aligned_cols=34  Identities=24%  Similarity=0.515  Sum_probs=22.4

Q ss_pred             hhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChhhHh
Q psy12265         14 HLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKD   57 (71)
Q Consensus        14 ~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~   57 (71)
                      ..+..-|.|+.|...++...+.       ..   -|.|+.||..
T Consensus       108 ~~~~~~y~C~~~~~r~sfdeA~-------~~---~F~Cp~Cg~~  141 (176)
T COG1675         108 ETENNYYVCPNCHVKYSFDEAM-------EL---GFTCPKCGED  141 (176)
T ss_pred             hccCCceeCCCCCCcccHHHHH-------Hh---CCCCCCCCch
Confidence            3455669998887776654432       22   2899999864

>COG3364 Zn-ribbon containing protein [General function prediction only]

Probab=83.01  E-value=0.92  Score=21.31  Aligned_cols=15  Identities=33%  Similarity=0.722  Sum_probs=12.0

Q ss_pred             Cceecccccccccch
Q psy12265         18 KPYGCEVCGRHFRQW   32 (71)
Q Consensus        18 ~~~~c~~c~~~~~~~   32 (71)
                      .|+.|.-||..|..-
T Consensus         1 MpH~CtrCG~vf~~g   15 (112)
T COG3364           1 MPHQCTRCGEVFDDG   15 (112)
T ss_pred             CCceecccccccccc
Confidence            478899999988764

>PLN02748 tRNA dimethylallyltransferase

Probab=82.96  E-value=0.57  Score=27.69  Aligned_cols=25  Identities=24%  Similarity=0.404  Sum_probs=20.6

Q ss_pred             CceeCChhhH-hhhchHHHHHhhhcC
Q psy12265         47 KAFQCEYCGK-DFARKYQAHSYHQIR   71 (71)
Q Consensus        47 ~~~~C~~c~~-~f~~~~~l~~h~~~~   71 (71)
                      +.|.|..|+. .+.....++.|++.|
T Consensus       417 ~~~~Ce~C~~~~~~G~~eW~~Hlksr  442 (468)
T PLN02748        417 TQYVCEACGNKVLRGAHEWEQHKQGR  442 (468)
T ss_pred             ccccccCCCCcccCCHHHHHHHhcch
Confidence            4578999997 799999999998754

>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair

Probab=82.91  E-value=0.55  Score=19.19  Aligned_cols=21  Identities=14%  Similarity=0.460  Sum_probs=7.2

Q ss_pred             ceeCChhhHhhhchHHHHHhh
Q psy12265         48 AFQCEYCGKDFARKYQAHSYH   68 (71)
Q Consensus        48 ~~~C~~c~~~f~~~~~l~~h~   68 (71)
                      .|+|+.|...|-..-++-.|.
T Consensus        21 ~y~C~~C~~~FC~dCD~fiHE   41 (51)
T PF07975_consen   21 RYRCPKCKNHFCIDCDVFIHE   41 (51)
T ss_dssp             EE--TTTT--B-HHHHHTTTT
T ss_pred             eEECCCCCCccccCcChhhhc
Confidence            455555555444444444443

It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.

>COG4530 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=82.45  E-value=0.72  Score=21.96  Aligned_cols=13  Identities=23%  Similarity=0.588  Sum_probs=7.5

Q ss_pred             CceeCChhhHhhh
Q psy12265         47 KAFQCEYCGKDFA   59 (71)
Q Consensus        47 ~~~~C~~c~~~f~   59 (71)
                      .|..|++||++|+
T Consensus        25 dPiVsPytG~s~P   37 (129)
T COG4530          25 DPIVSPYTGKSYP   37 (129)
T ss_pred             CccccCcccccch
Confidence            3555666666654

>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]

Probab=82.22  E-value=0.61  Score=23.46  Aligned_cols=35  Identities=26%  Similarity=0.786  Sum_probs=21.9

Q ss_pred             CCceecccccccccchhhHHHhHhhhcCCcCceeCChhhHh
Q psy12265         17 LKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKD   57 (71)
Q Consensus        17 ~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~   57 (71)
                      .-+|.|. |+..|...-   +|-. .-.|+ .|.|..|+-.
T Consensus       115 ~~~Y~C~-C~q~~l~~R---Rhn~-~~~g~-~YrC~~C~gk  149 (156)
T COG3091         115 TYPYRCQ-CQQHYLRIR---RHNT-VRRGE-VYRCGKCGGK  149 (156)
T ss_pred             ceeEEee-cCCccchhh---hccc-ccccc-eEEeccCCce
Confidence            3469999 998765432   2221 23345 8999999753

>COG4338 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=81.68  E-value=0.56  Score=18.93  Aligned_cols=16  Identities=19%  Similarity=0.515  Sum_probs=11.9

Q ss_pred             eCChhhHhhhchHHHH
Q psy12265         50 QCEYCGKDFARKYQAH   65 (71)
Q Consensus        50 ~C~~c~~~f~~~~~l~   65 (71)
                      .|+.|++.|+.+..++
T Consensus        14 ICpvCqRPFsWRkKW~   29 (54)
T COG4338          14 ICPVCQRPFSWRKKWA   29 (54)
T ss_pred             hhhhhcCchHHHHHHH
Confidence            5888888888766554

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=81.56  E-value=1.7  Score=25.00  Aligned_cols=47  Identities=17%  Similarity=0.215  Sum_probs=25.7

Q ss_pred             ecccccccccchhhHHHhHhhhcCCcCceeCChh----hHhhhchHHHHHhhh
Q psy12265         21 GCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYC----GKDFARKYQAHSYHQ   69 (71)
Q Consensus        21 ~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c----~~~f~~~~~l~~h~~   69 (71)
                      .|..|...|-....|..|++..|  ++-+.|..-    ...|..-.+|..|.+
T Consensus       222 ~C~FC~~~FYdDDEL~~HcR~~H--E~ChICD~v~p~~~QYFK~Y~~Le~HF~  272 (493)
T COG5236         222 LCIFCKIYFYDDDELRRHCRLRH--EACHICDMVGPIRYQYFKSYEDLEAHFR  272 (493)
T ss_pred             hhhhccceecChHHHHHHHHhhh--hhhhhhhccCccchhhhhCHHHHHHHhh
Confidence            56777777777777777776222  322333221    234566666666643

>KOG2231|consensus

Probab=81.35  E-value=5  Score=25.16  Aligned_cols=19  Identities=16%  Similarity=0.483  Sum_probs=10.2

Q ss_pred             CChhhHhhhchHHHHHhhh
Q psy12265         51 CEYCGKDFARKYQAHSYHQ   69 (71)
Q Consensus        51 C~~c~~~f~~~~~l~~h~~   69 (71)
                      |..|...|-....|..|++
T Consensus       185 C~~C~~~fld~~el~rH~~  203 (669)
T KOG2231|consen  185 CKFCHERFLDDDELYRHLR  203 (669)
T ss_pred             chhhhhhhccHHHHHHhhc
Confidence            4555555555555555544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	71
2i13_A	190	Aart, A Six Finger Zinc Finger Designed To Recogniz		8e-09
1mey_C	87	Crystal Structure Of A Designed Zinc Finger Protein		2e-08
1g2f_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		1e-07
1g2d_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		5e-07
2jp9_A	119	Structure Of The Wilms Tumor Suppressor Protein Zin		1e-06
1a1f_A	90	Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc		2e-06
1jk1_A	90	Zif268 D20a Mutant Bound To Wt Dna Site Length = 90		2e-06
1aay_A	90	Zif268 Zinc Finger-Dna Complex Length = 90		2e-06
1a1i_A	90	Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		2e-06
1p47_A	87	Crystal Structure Of Tandem Zif268 Molecules Comple		2e-06
1a1h_A	90	Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		2e-06
1zaa_C	87	Zinc Finger-Dna Recognition: Crystal Structure Of A		2e-06
2ee8_A	106	Solution Structure Of Three Zf-C2h2 Domains From Mo		3e-06
2csh_A	110	Solution Structure Of Tandem Repeat Of The Zf-C2h2		5e-06
2kmk_A	82	Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length =		1e-05
2dlq_A	124	Solution Structure Of The Tandem Four Zf-C2h2 Domai		2e-05
2yt9_A	95	Solution Structure Of C2h2 Type Zinc Finger Domain		5e-05
2ct1_A	77	Solution Structure Of The Zinc Finger Domain Of Tra		3e-04
2ebt_A	100	Solution Structure Of Three Tandem Repeats Of Zf-C2		3e-04
1llm_C	88	Crystal Structure Of A Zif23-Gcn4 Chimera Bound To		4e-04
1f2i_G	73	Cocrystal Structure Of Selected Zinc Finger Dimer B		5e-04
2dmd_A	96	Solution Structure Of The N-Terminal C2h2 Type Zinc		5e-04
2lce_A	74	Chemical Shift Assignment Of Hr4436b From Homo Sapi		6e-04

>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann Triplets Length = 190

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 7   LKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHS 66
           L+ H R H G KPY C  CG+ F Q   L+ H+ + H+  K ++C  CGK F+R+   H+
Sbjct: 93  LRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRT-HTGEKPYKCPECGKSFSREDNLHT 151
Query: 67  YHQI 70
           + + 
Sbjct: 152 HQRT 155

>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound To Dna Length = 87

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 5  TYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFAR 60
          + L+ H R H G KPY C  CG+ F Q  DL+ H+ + H+  K ++C  CGK F+R
Sbjct: 18 SNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRT-HTGEKPYKCPECGKSFSR 72

>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (Tatazf;clone #6) Length = 90

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 5  TYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFA 59
          T L  H R+H G KP+ C +C R+F Q   L  H    H+  K F C+ CG+ FA
Sbjct: 20 TNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAH-IRTHTGEKPFACDICGRKFA 73

>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE #2) Length = 90

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 5  TYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFA 59
          T L  H R+H G KP+ C +C R+F Q   L  H    H+  K F C+ CG+ FA
Sbjct: 20 TNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQH-IRTHTGEKPFACDICGRKFA 73

>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc Finger Domain Bound To Dna Length = 119

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 3/60 (5%)
Query: 3  KFTYLKVHNRVHLGLKPYGCEV--CGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFAR 60
          K ++L++H+R H G KPY C+   C R F +   LK H+   H+ VK FQC+ C + F+R
Sbjct: 20 KLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR-HTGVKPFQCKTCQRKFSR 78

>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site) Length = 90

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 5  TYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQA 64
          + L  H R+H G KP+ C +C R+F +   L  H    H+  K F C+ CG+ FAR  + 
Sbjct: 20 SNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH-IRTHTGEKPFACDICGRKFARSDER 78
Query: 65 HSYHQI 70
            + +I
Sbjct: 79 KRHTKI 84

>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site Length = 90

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 7  LKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHS 66
          L  H R+H G KP+ C +C R+F +   L  H    H+  K F C+ CG+ FAR  +   
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH-IRTHTGEKPFACDICGRKFARSDERKR 80
Query: 67 YHQI 70
          + +I
Sbjct: 81 HTKI 84

>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex Length = 90

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 7  LKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHS 66
          L  H R+H G KP+ C +C R+F +   L  H    H+  K F C+ CG+ FAR  +   
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH-IRTHTGEKPFACDICGRKFARSDERKR 80
Query: 67 YHQI 70
          + +I
Sbjct: 81 HTKI 84

>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 7  LKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHS 66
          L  H R+H G KP+ C +C R+F +   L  H    H+  K F C+ CG+ FAR  +   
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH-IRTHTGEKPFACDICGRKFARSDERKR 80
Query: 67 YHQI 70
          + +I
Sbjct: 81 HTKI 84

>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To Dna Length = 87

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 7  LKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHS 66
          L  H R+H G KP+ C +C R+F +   L  H    H+  K F C+ CG+ FAR  +   
Sbjct: 21 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH-IRTHTGEKPFACDICGRKFARSDERKR 79
Query: 67 YHQI 70
          + +I
Sbjct: 80 HTKI 83

>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 7  LKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHS 66
          L  H R+H G KP+ C +C R+F +   L  H    H+  K F C+ CG+ FAR  +   
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH-IRTHTGEKPFACDICGRKFARSDERKR 80
Query: 67 YHQI 70
          + +I
Sbjct: 81 HTKI 84

>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A Zif268- Dna Complex At 2.1 Angstroms Length = 87

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 7  LKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHS 66
          L  H R+H G KP+ C +C R+F +   L  H    H+  K F C+ CG+ FAR  +   
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH-IRTHTGEKPFACDICGRKFARSDERKR 80
Query: 67 YHQI 70
          + +I
Sbjct: 81 HTKI 84

>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse Protein Odd-Skipped-Related 2 Splicing Isoform 2 Length = 106

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 7  LKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDF 58
          L +H R H   +PY C++C + FR+   L+ H+  +HS  K F+C+ CGK F
Sbjct: 33 LLIHERTHTDERPYTCDICHKAFRRQDHLRDHRY-IHSKEKPFKCQECGKGF 83

>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains Of Human Zinc Finger Protein 297b Length = 110

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDF 58
          H  +HLGL+PYGC VCG+ F+    L  H   +H+ +K ++C  C K F
Sbjct: 28 HMSMHLGLRPYGCGVCGKKFKMKHHLVGH-MKIHTGIKPYECNICAKRF 75

>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length = 82

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 2  EKFTYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFAR 60
          ++ + L  H  +H   +PY C+ CG+ F Q  D+K H   +H+  K  +C+ CGK F++
Sbjct: 12 KRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKH-TFIHTGEKPHKCQVCGKAFSQ 69

>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain Repeats Of Murine Gli-Kruppel Family Member Hkr3 Length = 124

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 6  YLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKA--SLHSDVKAFQCEYCGKDFARKYQ 63
          YLKVHNR H G KP+ C  CG+ + +  +L  H+A   ++   + F C  C + F R+ +
Sbjct: 22 YLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRME 81

>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In Zinc Finger Protein 278 Length = 95

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 6  YLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDV-KAFQCEYCGKDFAR 60
          +L  H   H G KPY C VCG  F++   + YH  S    V K + C+ CGK F+R
Sbjct: 22 HLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSR 77

>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of Transcriptional Repressor Ctcf Protein Length = 77

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 11 NRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHS-DVKAFQCEYCGKDFARK 61
           R H G KPY C +C   F Q G +K H    H+ +V  F C +C    ARK
Sbjct: 7  GRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARK 58

>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2 Domains From Human Kruppel-Like Factor 5 Length = 100

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 3  KFTYLKVHNRVHLGLKPYGC--EVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFAR 60
          K ++LK H R H G KPY C  E C   F +  +L  H    H+  K FQC  C + F+R
Sbjct: 29 KSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK-HTGAKPFQCGVCNRSFSR 87

>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna Length = 88

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 17 LKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQI 70
          +KP+ C +C R+F +   L  H  + H+  K F C+ CG+ FAR  +   +  I
Sbjct: 1  MKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRHRDI 53

>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To Dna Length = 73

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 1  MEKFTYLKVHNRVHLGLKPYGCEV--CGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDF 58
          ME      + N V   ++PY C V  C R F +  +L  H   +H+  K FQC  C ++F
Sbjct: 1  MEPHPMNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRH-IRIHTGQKPFQCRICMRNF 59
Query: 59 AR 60
          +R
Sbjct: 60 SR 61

>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type Zinc-Binding Domain Of The Zinc Finger Protein 64, Isoforms 1 And 2 Length = 96

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 7  LKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYC 54
          LK H R H G+KPY C+ C         L  H   +HSD + F+C+ C
Sbjct: 24 LKTHMRCHTGVKPYKCKTCDYAAADSSSLNKH-LRIHSDERPFKCQIC 70

>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens, Northeast Structural Genomics Consortium Length = 74

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 18 KPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQI 70
          KPY C+ C   FR  G+L  HK ++H+  K ++C  CG  F R     ++ +I
Sbjct: 16 KPYKCDRCQASFRYKGNLASHK-TVHTGEKPYRCNICGAQFNRPANLKTHTRI 67

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	71
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	3e-13
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	1e-06
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	2e-11
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	3e-07
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	3e-06
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	2e-11
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	4e-04
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	1e-10
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	9e-08
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	1e-10
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	2e-10
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	4e-08
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	4e-07
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	2e-10
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	2e-06
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	3e-10
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	3e-07
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	1e-05
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	3e-10
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	6e-10
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	3e-10
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	5e-10
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	2e-05
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	3e-10
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	1e-07
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	2e-04
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	4e-10
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	4e-08
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	5e-06
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	9e-06
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	5e-10
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	2e-05
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	7e-10
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	1e-09
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	3e-05
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	9e-04
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	9e-10
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	1e-05
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	3e-04
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	1e-09
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	7e-07
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	2e-09
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	2e-06
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	2e-05
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	3e-04
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	3e-09
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	9e-09
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	1e-08
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	3e-08
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	2e-08
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	2e-04
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	2e-08
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	8e-05
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	2e-08
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	4e-05
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	4e-08
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	4e-06
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	3e-04
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	1e-07
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	8e-06
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	2e-07
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	5e-07
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	7e-07
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	1e-06
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	2e-04
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	1e-06
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	2e-06
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	4e-05
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	9e-05
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	2e-06
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	9e-05
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	2e-06
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	2e-05
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	3e-06
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	2e-05
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	4e-06
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	4e-06
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	6e-06
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	9e-06
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	1e-05
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	5e-05
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	7e-05
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	5e-04
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	9e-04
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	9e-06
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-05
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	4e-05
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	4e-05
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	5e-05
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	5e-05
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	5e-05
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	6e-05
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	6e-05
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	7e-05
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	7e-05
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	7e-05
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	9e-05
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	9e-05
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-04
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-04
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	1e-04
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	1e-04
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-04
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	1e-04
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-04
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	1e-04
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-04
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	1e-04
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-04
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-04
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-04
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-04
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	2e-04
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-04
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-04
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-04
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-04
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	2e-04
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	2e-04
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-04
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	2e-04
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-04
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	2e-04
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-04
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	3e-04
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-04
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-04
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-04
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	3e-04
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-04
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	3e-04
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-04
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-04
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	3e-04
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	3e-04
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	3e-04
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	3e-04
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	3e-04
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	3e-04
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	4e-04
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	4e-04
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	4e-04
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1} Len	4e-04
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	4e-04
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	4e-04
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	4e-04
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	4e-04
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	5e-04
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	5e-04
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	5e-04
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	5e-04
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	5e-04
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	5e-04
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	5e-04
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	6e-04
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	6e-04
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	6e-04
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	6e-04
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	6e-04
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	7e-04
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	7e-04
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	7e-04
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	7e-04
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	8e-04
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	8e-04
1ej6_B	1275	Lambda1; icosahedral, non-equivalence, dsRNA virus	8e-04

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 57.1 bits (139), Expect = 3e-13
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 7  LKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHS-DVKAFQCEYCGKDFARK 61
               R H G KPY C +C   F Q G +K H    H+ +V  F C +C    ARK
Sbjct: 3  SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARK 58

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 40.6 bits (96), Expect = 1e-06
 Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 2/40 (5%)

Query: 7  LKVHNRVHLG--LKPYGCEVCGRHFRQWGDLKYHKASLHS 44
          +K+H        +  + C  C     +  DL  H    HS
Sbjct: 31 MKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHS 70

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 52.9 bits (128), Expect = 2e-11
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 6  YLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFAR 60
           L  H R+H G KP+ C +C R+F +   L  H    H+  K F C+ CG+ FAR
Sbjct: 21 SLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI-RTHTGEKPFACDICGRKFAR 74

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 42.5 bits (101), Expect = 3e-07
 Identities = 14/34 (41%), Positives = 20/34 (58%)

Query: 6  YLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHK 39
          +L  H R H G KP+ C++CGR F +  + K H 
Sbjct: 49 HLTTHIRTHTGEKPFACDICGRKFARSDERKRHT 82

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 39.8 bits (94), Expect = 3e-06
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 3/45 (6%)

Query: 18 KPYGCEV--CGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFAR 60
          +PY C V  C R F Q G L  H   +H+  K FQC  C ++F+R
Sbjct: 3  RPYACPVESCDRRFSQSGSLTRHI-RIHTGQKPFQCRICMRNFSR 46

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 52.2 bits (126), Expect = 2e-11
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 11 NRVHLGLKPYGCEVCGRHFRQWGDLKYHK-ASLHSDVKAFQCEYCGKDFARK 61
               G   Y C+VC R +    +   H   S   +VK + C +C K+F RK
Sbjct: 2  EFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRK 53

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 33.7 bits (78), Expect = 4e-04
 Identities = 7/35 (20%), Positives = 12/35 (34%), Gaps = 2/35 (5%)

Query: 7  LKVHNRV--HLGLKPYGCEVCGRHFRQWGDLKYHK 39
             H        +K Y C  C + F +  ++  H 
Sbjct: 26 FCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 51.0 bits (123), Expect = 1e-10
 Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 4/66 (6%)

Query: 6  YLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKY--Q 63
          +L  H R H G KP+ C++CGR F +  + K H+  +         +   +  ++ Y  +
Sbjct: 18 HLTTHIRTHTGEKPFACDICGRKFARSDERKRHR-DIQHI-LPILEDKVEELLSKNYHLE 75

Query: 64 AHSYHQ 69
                
Sbjct: 76 NEVARL 81

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 43.6 bits (104), Expect = 9e-08
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 17 LKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARK 61
          +KP+ C +C R+F +   L  H    H+  K F C+ CG+ FAR 
Sbjct: 1  MKPFQCRICMRNFSRSDHLTTHI-RTHTGEKPFACDICGRKFARS 44

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 49.9 bits (120), Expect = 1e-10
 Identities = 11/50 (22%), Positives = 20/50 (40%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFA 59
                  KPY C+ CG+ F +   L  H   +H+  +  +C+      +
Sbjct: 3  SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 51.3 bits (124), Expect = 2e-10
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 5  TYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQA 64
          +    H  +HLGL+PYGC VCG+ F+    L  H   +H+ +K ++C  C K F  +   
Sbjct: 23 SQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHM-KIHTGIKPYECNICAKRFMWRDSF 81

Query: 65 H 65
          H
Sbjct: 82 H 82

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 45.1 bits (108), Expect = 4e-08
 Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 5   TYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARK 61
            +L  H ++H G+KPY C +C + F        H   + S  K+++     ++    
Sbjct: 51  HHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRH---VTSCTKSYEAAKAEQNTTEA 104

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 42.4 bits (101), Expect = 4e-07
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 12 RVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARK 61
              G K Y C+ CG+ F        H  S+H  ++ + C  CGK F  K
Sbjct: 3  SGSSGDKLYPCQ-CGKSFTHKSQRDRHM-SMHLGLRPYGCGVCGKKFKMK 50

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 50.1 bits (121), Expect = 2e-10
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 6  YLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARK 61
          +   H+ +    KPY C+ C   FR  G+L  HK ++H+  K ++C  CG  F R 
Sbjct: 4  HHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHK-TVHTGEKPYRCNICGAQFNRP 58

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 39.7 bits (94), Expect = 2e-06
 Identities = 15/35 (42%), Positives = 18/35 (51%)

Query: 5  TYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHK 39
            L  H  VH G KPY C +CG  F +  +LK H 
Sbjct: 31 GNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHT 65

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 50.1 bits (121), Expect = 3e-10
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 6  YLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARK 61
           LK H R H G+KPY C+ C         L  H   +HSD + F+C+ C       
Sbjct: 23 KLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLR-IHSDERPFKCQICPYASRNS 77

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 42.4 bits (101), Expect = 3e-07
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 14 HLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARK 61
               P+ CEVCG+ F +   LK H    H+ VK ++C+ C    A  
Sbjct: 3  SGSSGPHKCEVCGKCFSRKDKLKTHM-RCHTGVKPYKCKTCDYAAADS 49

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 38.6 bits (91), Expect = 1e-05
 Identities = 10/34 (29%), Positives = 15/34 (44%)

Query: 6  YLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHK 39
           L  H R+H   +P+ C++C    R    L  H 
Sbjct: 51 SLNKHLRIHSDERPFKCQICPYASRNSSQLTVHL 84

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 49.7 bits (119), Expect = 3e-10
 Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 3/56 (5%)

Query: 7  LKVHNRVH---LGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFA 59
          L  H R H   +    + CE CG+ F +   +  H++  H  +     E  G    
Sbjct: 23 LNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQESSGPSSG 78

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 48.9 bits (117), Expect = 6e-10
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 4/51 (7%)

Query: 14 HLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDV---KAFQCEYCGKDFARK 61
            G     CE+CG   RQ   L +H+   H++      F CE+CGK F + 
Sbjct: 2  SSGSSGLQCEICGFTCRQKASLNWHQ-RKHAETVAALRFPCEFCGKRFEKP 51

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 50.5 bits (122), Expect = 3e-10
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 6  YLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARK 61
                      K + C+ CGRHF +  +L  H+   H+D + + C+ C K F R+
Sbjct: 4  GSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHE-RTHTDERPYTCDICHKAFRRQ 58

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 49.7 bits (120), Expect = 5e-10
 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 5  TYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARK 61
            L +H R H   +PY C++C + FR+   L+ H+  +HS  K F+C+ CGK F + 
Sbjct: 31 YNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHR-YIHSKEKPFKCQECGKGFCQS 86

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 37.8 bits (89), Expect = 2e-05
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 5   TYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQC 51
            +L+ H  +H   KP+ C+ CG+ F Q   L  HK +LH    +   
Sbjct: 59  DHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHK-TLHMQTSSPTA 104

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 50.2 bits (121), Expect = 3e-10
 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 5  TYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHS--DVKAFQCEYCGKDFARK 61
           +L  H   H G KPY C VCG  F++   + YH    H     K + C+ CGK F+R 
Sbjct: 21 YHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHV-RSHDGSVGKPYICQSCGKGFSRP 78

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 43.2 bits (103), Expect = 1e-07
 Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 14 HLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARK 61
            G     CE+CG+ FR    L  HK S HS  K + C  CG  F RK
Sbjct: 2  SSGSSGVACEICGKIFRDVYHLNRHKLS-HSGEKPYSCPVCGLRFKRK 48

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 34.8 bits (81), Expect = 2e-04
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)

Query: 6  YLKVHNRVHLG--LKPYGCEVCGRHFRQWGDLKYHKASLHS 44
           +  H R H G   KPY C+ CG+ F +   L  H   +HS
Sbjct: 50 RMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHS 90

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 50.2 bits (121), Expect = 4e-10
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 2/59 (3%)

Query: 5  TYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYH--KASLHSDVKAFQCEYCGKDFARK 61
           YLKVHNR H G KP+ C  CG+ + +  +L  H  +  ++   + F C  C + F R+
Sbjct: 21 YYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRR 79

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 45.2 bits (108), Expect = 4e-08
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 5/70 (7%)

Query: 5   TYLKVHNR---VHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARK 61
             L  H     ++   + + C VC   FR+  +L+ H    H+    ++C  C + F +K
Sbjct: 49  ENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHM-VSHTGEMPYKCSSCSQQFMQK 107

Query: 62  YQAHSYHQIR 71
               S H I+
Sbjct: 108 KDLQS-HMIK 116

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 39.8 bits (94), Expect = 5e-06
 Identities = 16/40 (40%), Positives = 20/40 (50%)

Query: 5   TYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHS 44
             L++H   H G  PY C  C + F Q  DL+ H   LHS
Sbjct: 80  MELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHS 119

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 39.0 bits (92), Expect = 9e-06
 Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 1/48 (2%)

Query: 14 HLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARK 61
            G     C  C + F     LK H    H+  K F+C  CGK + RK
Sbjct: 2  SSGSSGVECPTCHKKFLSKYYLKVHN-RKHTGEKPFECPKCGKCYFRK 48

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 49.9 bits (120), Expect = 5e-10
 Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 3  KFTYLKVHNRVHLGLKPYGC--EVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFAR 60
          K ++LK H R H G KPY C  E C   F +  +L  H    H+  K FQC  C + F+R
Sbjct: 29 KSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK-HTGAKPFQCGVCNRSFSR 87

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 38.0 bits (89), Expect = 2e-05
 Identities = 14/33 (42%), Positives = 16/33 (48%)

Query: 7  LKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHK 39
          L  H R H G KP+ C VC R F +   L  H 
Sbjct: 63 LTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHM 95

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 49.8 bits (120), Expect = 7e-10
 Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 3/58 (5%)

Query: 6   YLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEY--CGKDFARK 61
            LK H R H G+KP+ C+ C R F +   LK H  + H+  K F C +  C K FAR 
Sbjct: 53  QLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRT-HTGEKPFSCRWPSCQKKFARS 109

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 49.1 bits (118), Expect = 1e-09
 Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 3/58 (5%)

Query: 6  YLKVHNRVHLGLKPYGCEV--CGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARK 61
          +L++H+R H G KPY C+   C R F +   LK H+   H+ VK FQC+ C + F+R 
Sbjct: 23 HLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQ-RRHTGVKPFQCKTCQRKFSRS 79

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 37.9 bits (89), Expect = 3e-05
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 5   TYLKVHNRVHLGLKPYGCEV--CGRHFRQWGDLKYHK 39
            +LK H R H G KP+ C    C + F +  +L  H 
Sbjct: 80  DHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHH 116

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 34.0 bits (79), Expect = 9e-04
 Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 5/47 (10%)

Query: 18 KPYGCE--VCGRHFRQWGDLKYHKASLHSDVKAFQCEY--CGKDFAR 60
          +P+ C    C + + +   L+ H    H+  K +QC++  C + F+R
Sbjct: 5  RPFMCAYPGCNKRYFKLSHLQMHS-RKHTGEKPYQCDFKDCERRFSR 50

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 48.6 bits (117), Expect = 9e-10
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 6  YLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARK 61
           L  H  +H   +PY C+ CG+ F Q  D+K H   +H+  K  +C+ CGK F++ 
Sbjct: 16 TLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHT-FIHTGEKPHKCQVCGKAFSQS 70

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 38.2 bits (90), Expect = 1e-05
 Identities = 14/34 (41%), Positives = 20/34 (58%)

Query: 6  YLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHK 39
           +K H  +H G KP+ C+VCG+ F Q  +L  H 
Sbjct: 44 DMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHS 77

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 34.3 bits (80), Expect = 3e-04
 Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 20 YGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARK 61
          + C++CG+ F++   L  H   +HSD + + C+YCGK F +K
Sbjct: 2  FDCKICGKSFKRSSTLSTHL-LIHSDTRPYPCQYCGKRFHQK 42

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 48.3 bits (116), Expect = 1e-09
 Identities = 21/58 (36%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 7  LKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKAS---LHSDVKAFQCEYCGKDFARK 61
               R H G KPY C  C + FRQ   L  H       +    AF C  CGK F R+
Sbjct: 3  SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRR 60

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 41.4 bits (98), Expect = 7e-07
 Identities = 9/58 (15%), Positives = 18/58 (31%), Gaps = 5/58 (8%)

Query: 5  TYLKVHNRVHLG----LKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDF 58
            L +H + +         + C  CG+ F +   +  H     +     + E  G   
Sbjct: 29 QLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA-DNCAGPDGVEGENSGPSS 85

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 49.5 bits (119), Expect = 2e-09
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 7   LKVHNRVHLGLKPYGCE--VCGRHFRQWGDLKYHKASLHSDVKAFQCEY--CGKDFAR 60
           LK H R H G KPY CE   C + F    D   H+   HS+ K + C+   C K +  
Sbjct: 85  LKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTD 142

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 41.0 bits (97), Expect = 2e-06
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 5/58 (8%)

Query: 7   LKVHNRVHLGLKPYGC--EVCGRHFRQWGDLKYHKASLHSDVKAFQCEY--CGKDFAR 60
           L VH R H G KP+ C  E C + + +  +LK H  S H+  K + CE+  C K F+ 
Sbjct: 55  LVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRS-HTGEKPYMCEHEGCSKAFSN 111

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 38.7 bits (91), Expect = 2e-05
 Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 2/53 (3%)

Query: 18 KPYGCEVCGRHFRQWGDLKYHKAS--LHSDVKAFQCEYCGKDFARKYQAHSYH 68
               + C + F     L +H  S  +H + K F C + G     +     Y 
Sbjct: 2  TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYM 54

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 35.6 bits (83), Expect = 3e-04
 Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 11/64 (17%)

Query: 7  LKVH---NRVHLGLKPYGCEVCG-----RHFRQWGDLKYHKASLHSDVKAFQCEY--CGK 56
          L  H     +H   K + C   G     R F+    L  H    H+  K  +C +  C K
Sbjct: 19 LVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHM-RRHTGEKPHKCTFEGCRK 77

Query: 57 DFAR 60
           ++R
Sbjct: 78 SYSR 81

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 49.4 bits (119), Expect = 3e-09
 Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 2/65 (3%)

Query: 5   TYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQA 64
             L  H R H G KPY C  CG+ F Q  +L+ H+   H+  K + C  CGK F++    
Sbjct: 63  KDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQ-RTHTGEKPYACPECGKSFSQLAHL 121

Query: 65  HSYHQ 69
            + HQ
Sbjct: 122 RA-HQ 125

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 47.8 bits (115), Expect = 9e-09
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 5  TYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARK 61
          +       +  G KPY C  CG+ F +   L  H+   H+  K ++C  CGK F+ K
Sbjct: 7  SSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQ-RTHTGEKPYKCPECGKSFSDK 62

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 47.4 bits (114), Expect = 1e-08
 Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 5  TYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARK 61
           +L  H R H G KPY C  CG+ F    DL  H+   H+  K ++C  CGK F+++
Sbjct: 35 DHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQ-RTHTGEKPYKCPECGKSFSQR 90

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 46.7 bits (112), Expect = 3e-08
 Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 2/65 (3%)

Query: 5   TYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQA 64
            +L+ H R H G KPY C  CG+ F +  +L  H+   H+  K ++C  CGK F+R+   
Sbjct: 119 AHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQ-RTHTGEKPYKCPECGKSFSRRDAL 177

Query: 65  HSYHQ 69
           +  HQ
Sbjct: 178 NV-HQ 181

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 45.6 bits (109), Expect = 2e-08
 Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 3/60 (5%)

Query: 3  KFTYLKVHNRVHLGLKPYGC--EVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFAR 60
          K ++LK H R H G KPY C  + CG  F +  +L  H    H+  + FQC+ C + F+R
Sbjct: 19 KSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK-HTGHRPFQCQKCDRAFSR 77

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 35.2 bits (82), Expect = 2e-04
 Identities = 12/33 (36%), Positives = 16/33 (48%)

Query: 7  LKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHK 39
          L  H R H G +P+ C+ C R F +   L  H 
Sbjct: 53 LTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHM 85

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 44.8 bits (107), Expect = 2e-08
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 7  LKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARK 61
              + +H G KPYGC  CG+ F +   L  H+  +H+  K ++C  CGK F++ 
Sbjct: 2  SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQ-RVHTGEKPYKCLECGKAFSQN 55

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 35.5 bits (83), Expect = 8e-05
 Identities = 16/35 (45%), Positives = 19/35 (54%)

Query: 5  TYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHK 39
          + L  H RVH G KPY C  CG+ F Q   L  H+
Sbjct: 28 SILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQ 62

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 44.7 bits (107), Expect = 2e-08
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 7  LKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARK 61
                     + Y C+ CG+ F    DL  H+   H+  K ++C+ CGK F ++
Sbjct: 6  SGRSEWQQRERRRYKCDECGKSFSHSSDLSKHR-RTHTGEKPYKCDECGKAFIQR 59

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 36.7 bits (86), Expect = 4e-05
 Identities = 15/35 (42%), Positives = 18/35 (51%)

Query: 5  TYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHK 39
          + L  H R H G KPY C+ CG+ F Q   L  H 
Sbjct: 32 SDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHH 66

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 44.5 bits (106), Expect = 4e-08
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 6  YLKVHNRV-HLGLKPYGCE--VCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDF 58
          YL  H +  H+  K + C    CG+ F     LK H   LHSD + + CE+ G   
Sbjct: 24 YLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHM-KLHSDTRDYICEFSGPSS 78

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 39.5 bits (93), Expect = 4e-06
 Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 4/52 (7%)

Query: 14 HLGLKPYGCEV--CGRHFRQWGDLKYHKASLHSDVKAFQCEY--CGKDFARK 61
            G     C+   CGR F     L +HK   H   K+F C    CGK F  K
Sbjct: 2  SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFK 53

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 34.4 bits (80), Expect = 3e-04
 Identities = 8/25 (32%), Positives = 12/25 (48%)

Query: 5  TYLKVHNRVHLGLKPYGCEVCGRHF 29
           +LK H ++H   + Y CE  G   
Sbjct: 54 KHLKEHMKLHSDTRDYICEFSGPSS 78

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 43.3 bits (103), Expect = 1e-07
 Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 1/50 (2%)

Query: 12 RVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARK 61
                 P  C  C         L+ H+  +H   + F+C YC  D  + 
Sbjct: 2  SSGSSGHPEKCSECSYSCSSKAALRIHER-IHCTDRPFKCNYCSFDTKQP 50

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 38.2 bits (90), Expect = 8e-06
 Identities = 10/34 (29%), Positives = 17/34 (50%)

Query: 7  LKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKA 40
          L++H R+H   +P+ C  C    +Q  +L  H  
Sbjct: 25 LRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMK 58

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 42

 Score = 41.7 bits (99), Expect = 2e-07
 Identities = 13/29 (44%), Positives = 15/29 (51%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYH 38
           +    G KPY CE+CG  FR    LK H
Sbjct: 2  SSGSSGGEKPYPCEICGTRFRHLQTLKSH 30

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 41.6 bits (97), Expect = 5e-07
 Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 8/55 (14%)

Query: 7  LKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARK 61
               ++HLG +   C  CG  F +         S  S  K   CE C KD  ++
Sbjct: 6  SGKRQKIHLGDRSQKCSKCGIIFIR--------RSTLSRRKTPMCEKCRKDSCQE 52

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 42.1 bits (100), Expect = 7e-07
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 4/58 (6%)

Query: 6  YLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEY--CGKDFARK 61
           ++ H   H G + + C  CG+ F +   LK H+  +H+  K FQC +  CGK F+  
Sbjct: 22 AMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQ-LVHTGEKPFQCTFEGCGKRFSLD 77

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 41.7 bits (99), Expect = 1e-06
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 5/61 (8%)

Query: 5   TYLKVHNRVHLGLKPYGCEV--CGRHFRQWGDLKYHKASLHSDVKAFQCEY--CGKDFAR 60
           + LK H  VH G KP+ C    CG+ F    +L+ H   +H+  + + C +  C K FA+
Sbjct: 48  SKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHV-RIHTGDRPYVCPFDGCNKKFAQ 106

Query: 61  K 61
            
Sbjct: 107 S 107

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 35.6 bits (83), Expect = 2e-04
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 6   YLKVHNRVHLGLKPYGCEV--CGRHFRQWGDLKYHK 39
            L+ H R+H G +PY C    C + F Q  +LK H 
Sbjct: 79  NLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHI 114

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 42.3 bits (100), Expect = 1e-06
 Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 5/59 (8%)

Query: 7   LKVHNRVHLGLKPYGCEV--CGRHFRQWGDLKYHKASLHSDVKAFQCEY--CGKDFARK 61
           L  H RVH G KP+ C    CG+ F +  +LK HK + H+  K F+CE+  C + FA  
Sbjct: 78  LVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRT-HTGEKPFKCEFEGCDRRFANS 135

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 41.5 bits (98), Expect = 2e-06
 Identities = 12/62 (19%), Positives = 16/62 (25%), Gaps = 8/62 (12%)

Query: 9  VHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLH--------SDVKAFQCEYCGKDFAR 60
              +         + C R F    +L  H    H              +C   GK F  
Sbjct: 15 SCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKA 74

Query: 61 KY 62
          KY
Sbjct: 75 KY 76

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 38.0 bits (89), Expect = 4e-05
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 7   LKVHNRVHLGLKPYGCEV--CGRHFRQWGDLKYHKASLHSDVKAFQC 51
           LK+H R H G KP+ CE   C R F    D K H   +H+  K+   
Sbjct: 108 LKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHM-HVHTSDKSGPS 153

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 36.9 bits (86), Expect = 9e-05
 Identities = 18/65 (27%), Positives = 24/65 (36%), Gaps = 12/65 (18%)

Query: 7   LKVHNRVHLGLKPY---------GCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEY--CG 55
           L  H  +     P           C   G+ F+    L  H   +H+  K F C +  CG
Sbjct: 41  LVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHI-RVHTGEKPFPCPFPGCG 99

Query: 56  KDFAR 60
           K FAR
Sbjct: 100 KIFAR 104

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 40.3 bits (95), Expect = 2e-06
 Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 3/60 (5%)

Query: 3  KFTYLKVHNRVHLGLKPYGC--EVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFAR 60
          K   LKVH   H    PY C  E C + F     LK H+   H+     + + C      
Sbjct: 15 KHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKV-HAGYPCKKDDSCSFVGKT 73

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 36.1 bits (84), Expect = 9e-05
 Identities = 11/37 (29%), Positives = 14/37 (37%)

Query: 7  LKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLH 43
          LK H +VH G      + C    + W     H A  H
Sbjct: 49 LKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 40.0 bits (94), Expect = 2e-06
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 10 HNRVHLGLKPYGC--EVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFAR 60
           N V   ++PY C  E C R F +  +L  H   +H+  K FQC  C ++F+R
Sbjct: 10 LNYVVPKMRPYACPVESCDRRFSRSDELTRHI-RIHTGQKPFQCRICMRNFSR 61

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 37.3 bits (87), Expect = 2e-05
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 7  LKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHK 39
          L  H R+H G KP+ C +C R+F +   L  H 
Sbjct: 37 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 69

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 39.0 bits (92), Expect = 3e-06
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 18 KPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARK 61
          + + CEVC R F +   LK H  S H++ K + C  C + F R+
Sbjct: 1  RSFVCEVCTRAFARQEHLKRHYRS-HTNEKPYPCGLCNRAFTRR 43

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 37.1 bits (87), Expect = 2e-05
 Identities = 16/38 (42%), Positives = 19/38 (50%)

Query: 7  LKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHS 44
          LK H R H   KPY C +C R F +   L  H   +HS
Sbjct: 18 LKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 38.3 bits (90), Expect = 4e-06
 Identities = 12/30 (40%), Positives = 14/30 (46%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHK 39
           +    G KPY CE CG  F Q   L+ H 
Sbjct: 2  SSGSSGGEKPYKCETCGARFVQVAHLRAHV 31

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.3 bits (90), Expect = 4e-06
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 9  VHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQC 51
                +G K Y C+VCG+ F Q   L+ H+  +H+  K    
Sbjct: 2  SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQ-RVHTGEKPSGP 43

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 47

 Score = 37.9 bits (89), Expect = 6e-06
 Identities = 13/42 (30%), Positives = 15/42 (35%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQC 51
                G KPY C  CG+ F Q   L  H    H+  K    
Sbjct: 3  SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 39.9 bits (94), Expect = 9e-06
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 5/60 (8%)

Query: 6  YLKVHNRVHLGLKPYGCE--VCGRHFRQWGDLKYHKASLHSDVKAFQCE--YCGKDFARK 61
           L+ H   H G KP+ C+   C + F     L  H    H+  K F C+   C   F  K
Sbjct: 29 KLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHS-LTHTGEKNFTCDSDGCDLRFTTK 87

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 39.9 bits (94), Expect = 1e-05
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 6   YLKVHNRVHLGLKPYGC--EVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGK 56
            LKVH   H    PY C  E C + F     LK H+  +H+     + + C  
Sbjct: 121 QLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHE-KVHAGYPCKKDDSCSF 172

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 38.0 bits (89), Expect = 5e-05
 Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 5/58 (8%)

Query: 10 HNRVHLGLKPYGCEV--CGRHFRQWGDLKYHKASLHSDVKAFQCEY--CGKDFARKYQ 63
             + +  K Y C    CG  + +   L+ H    H+  K F C+   C K F   + 
Sbjct: 3  EKALPVVYKRYICSFADCGAAYNKNWKLQAHL-CKHTGEKPFPCKEEGCEKGFTSLHH 59

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 37.6 bits (88), Expect = 7e-05
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 7/64 (10%)

Query: 6   YLKVHNRVHLGLKPYGCE--VCGRHFRQWGDLKYHKASLHSDVKA--FQCEY--CGKDFA 59
           +L  H+  H G K + C+   C   F    ++K H  +   ++K   + C +  CGK F 
Sbjct: 59  HLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHF-NRFHNIKICVYVCHFENCGKAFK 117

Query: 60  RKYQ 63
           +  Q
Sbjct: 118 KHNQ 121

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 35.3 bits (82), Expect = 5e-04
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 7/63 (11%)

Query: 5   TYLKVHNRVHLGLK--PYGCEV--CGRHFRQWGDLKYHKASLHSDVKAFQC--EYCGKDF 58
             +K H      +K   Y C    CG+ F++   LK H+   H+    ++C  E C K F
Sbjct: 88  ANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQ-FSHTQQLPYECPHEGCDKRF 146

Query: 59  ARK 61
           +  
Sbjct: 147 SLP 149

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 34.5 bits (80), Expect = 9e-04
 Identities = 12/40 (30%), Positives = 15/40 (37%)

Query: 6   YLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSD 45
            LK H +VH G      + C    + W     H A  H D
Sbjct: 151 RLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECHQD 190

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.5 bits (88), Expect = 9e-06
 Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 1/44 (2%)

Query: 9  VHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE 52
                 G KP+ C++CG+ F     L  H   +H+  K     
Sbjct: 2  SSGSSGTGEKPFKCDICGKSFCGRSRLNRHS-MVHTAEKPSGPS 44

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 36.4 bits (85), Expect = 3e-05
 Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE 52
                G KPY CE CG+ F    DL  H   +H+  K     
Sbjct: 3  SGSSGTGEKPYKCEECGKGFICRRDLYTHHM-VHTGEKPSGPS 44

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A Length = 46

 Score = 36.0 bits (84), Expect = 4e-05
 Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 1/43 (2%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE 52
                G KPY C+ CG+ FR    L  H+  +HS  K     
Sbjct: 3  SGSSGTGEKPYNCKECGKSFRWASCLLKHQ-RVHSGEKPSGPS 44

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.0 bits (84), Expect = 4e-05
 Identities = 14/44 (31%), Positives = 17/44 (38%), Gaps = 1/44 (2%)

Query: 9  VHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE 52
                 G KPYGC  CG+ F Q   L  H+   H+  K     
Sbjct: 2  SSGSSGSGEKPYGCNECGKTFSQKSILSAHQ-RTHTGEKPSGPS 44

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.6 bits (83), Expect = 5e-05
 Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 1/43 (2%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE 52
                G+KPY C  CG+ F  +  L  H+  +H+  K     
Sbjct: 3  SGSSGTGVKPYMCNECGKAFSVYSSLTTHQV-IHTGEKPSGPS 44

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 35.6 bits (83), Expect = 5e-05
 Identities = 12/30 (40%), Positives = 15/30 (50%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHK 39
           +    G KPY C+ CG+ F Q G L  H 
Sbjct: 2  SSGSSGGEKPYRCDQCGKAFSQKGSLIVHI 31

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.6 bits (83), Expect = 5e-05
 Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 1/42 (2%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQC 51
                G +PYGC  CG++F +   L  H    H   K+   
Sbjct: 3  SGSSGSGERPYGCNECGKNFGRHSHLIEHL-KRHFREKSSGP 43

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 45

 Score = 35.6 bits (83), Expect = 6e-05
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQC 51
                G KP+ C  CG+ FR  G+L  H+  +H+  K+   
Sbjct: 3  SGSSGTGQKPFECTHCGKSFRAKGNLVTHQ-RIHTGEKSGPS 43

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.6 bits (83), Expect = 6e-05
 Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQC 51
                G KPY C+VC + FR    L  H+  +H+  K    
Sbjct: 3  SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQR-IHTGEKPSGP 43

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.2 bits (82), Expect = 7e-05
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQC 51
                G KPY C+VCG+ FR    L  H  S+HS  +    
Sbjct: 3  SGSSGTGEKPYKCQVCGKAFRVSSHLVQHH-SVHSGERPSGP 43

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 36.7 bits (84), Expect = 7e-05
 Identities = 9/63 (14%), Positives = 20/63 (31%), Gaps = 1/63 (1%)

Query: 7  LKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYH-KASLHSDVKAFQCEYCGKDFARKYQAH 65
           K++  +  G   + C+ C   +    +L  H   + H      + +        K +  
Sbjct: 7  GKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKR 66

Query: 66 SYH 68
          S  
Sbjct: 67 SLL 69

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.2 bits (82), Expect = 7e-05
 Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 1/43 (2%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE 52
                G KPY C  CG+ FR   +L  H+  +H+  K     
Sbjct: 3  SGSSGTGEKPYKCNECGKAFRAHSNLTTHQV-IHTGEKPSGPS 44

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.2 bits (82), Expect = 9e-05
 Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 1/44 (2%)

Query: 9  VHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE 52
                 G KPY C+VC + F     L  H+  +HS  K     
Sbjct: 2  SSGSSGTGEKPYECDVCRKAFSHHASLTQHQ-RVHSGEKPSGPS 44

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.2 bits (82), Expect = 9e-05
 Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 1/44 (2%)

Query: 9  VHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE 52
                 G KPY C  CG+ F Q   L  H+  +H+  K     
Sbjct: 2  SSGSSGTGKKPYKCNECGKVFTQNSHLARHR-GIHTGEKPSGPS 44

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.8 bits (81), Expect = 1e-04
 Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE 52
                G KPY C+VC + F Q   L  H+   H+  K     
Sbjct: 3  SGSSGTGEKPYECKVCSKAFTQKAHLAQHQ-KTHTGEKPSGPS 44

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.8 bits (81), Expect = 1e-04
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYH 38
                G KPY C  CG+ +++  DL +H
Sbjct: 3  SGSSGSGEKPYKCVECGKGYKRRLDLDFH 31

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.8 bits (81), Expect = 1e-04
 Identities = 9/30 (30%), Positives = 14/30 (46%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHK 39
                  KPY CE CG+ + +  +L  H+
Sbjct: 3  SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQ 32

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A Length = 46

 Score = 34.8 bits (81), Expect = 1e-04
 Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 1/42 (2%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQC 51
                G+KPYGC  C + F     L  H+   H+ VK    
Sbjct: 3  SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQ-RSHTGVKPSGP 43

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.8 bits (81), Expect = 1e-04
 Identities = 10/30 (33%), Positives = 14/30 (46%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHK 39
                G KPY CE CG+ +    +L  H+
Sbjct: 3  SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQ 32

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.8 bits (81), Expect = 1e-04
 Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 1/42 (2%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQC 51
                G K Y C+ CG+ F +   L  H+  LHS  K    
Sbjct: 3  SGSSGTGEKLYNCKECGKSFSRAPCLLKHE-RLHSGEKPSGP 43

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.8 bits (81), Expect = 1e-04
 Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 1/43 (2%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE 52
                G KPY CE CG+ F     L+ H+  +H+  K     
Sbjct: 3  SGSSGTGEKPYNCEECGKAFIHDSQLQEHQR-IHTGEKPSGPS 44

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.8 bits (81), Expect = 1e-04
 Identities = 12/43 (27%), Positives = 15/43 (34%), Gaps = 1/43 (2%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE 52
                G KPY C VCG+ F     L  H   +H+        
Sbjct: 3  SGSSGTGEKPYSCNVCGKAFVLSAHLNQHL-RVHTQETLSGPS 44

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.8 bits (81), Expect = 1e-04
 Identities = 11/30 (36%), Positives = 14/30 (46%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHK 39
                G KP+ CE CG+ F Q   L  H+
Sbjct: 3  SGSSGSGEKPFKCEECGKRFTQNSQLHSHQ 32

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.4 bits (80), Expect = 1e-04
 Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 1/42 (2%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQC 51
                G KPY C  CG+ FR    L  H+A  HS  K    
Sbjct: 3  SGSSGTGEKPYKCNECGKAFRARSSLAIHQA-THSGEKPSGP 43

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 34.5 bits (80), Expect = 2e-04
 Identities = 13/46 (28%), Positives = 16/46 (34%), Gaps = 2/46 (4%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCG 55
                G KP+ CE CG+ F        H+   HS  K       G
Sbjct: 3  SGSSGSGEKPFKCEECGKGFYTNSQCYSHQ-RSHSGEKPSGPS-SG 46

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.4 bits (80), Expect = 2e-04
 Identities = 10/29 (34%), Positives = 13/29 (44%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYH 38
                G +PY C VCG+ F    +L  H
Sbjct: 3  SGSSGTGERPYICTVCGKAFTDRSNLIKH 31

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.5 bits (80), Expect = 2e-04
 Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 1/43 (2%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE 52
                G KPY C  CG+ F        H+  LH+  +     
Sbjct: 3  SGSSGTGEKPYKCMECGKAFGDNSSCTQHQ-RLHTGQRPSGPS 44

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.4 bits (80), Expect = 2e-04
 Identities = 10/29 (34%), Positives = 12/29 (41%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYH 38
                G KPY C  CG+ F    +L  H
Sbjct: 3  SGSSGTGEKPYRCAECGKAFTDRSNLFTH 31

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 48

 Score = 34.5 bits (79), Expect = 2e-04
 Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 18 KPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYC 54
          K   CE+CG+ FR    L  HK S HS  K +     
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLS-HSGEKPYSSGPS 46

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.4 bits (80), Expect = 2e-04
 Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQC 51
                G KP+ CE CG+ F Q   L  H+  +H+  K    
Sbjct: 3  SGSSGSGEKPFQCEECGKRFTQNSHLHSHQ-RVHTGEKPSGP 43

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.4 bits (80), Expect = 2e-04
 Identities = 10/30 (33%), Positives = 13/30 (43%)

Query: 9  VHNRVHLGLKPYGCEVCGRHFRQWGDLKYH 38
                 G KPY C +CG+ F +   L  H
Sbjct: 2  SSGSSGTGEKPYECSICGKSFTKKSQLHVH 31

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.4 bits (80), Expect = 2e-04
 Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 1/43 (2%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE 52
                G KP+ C+ CG+ FRQ   L  H   +H+  K     
Sbjct: 3  SGSSGSGEKPFKCKECGKAFRQNIHLASHL-RIHTGEKPSGPS 44

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 34.1 bits (79), Expect = 2e-04
 Identities = 9/30 (30%), Positives = 13/30 (43%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHK 39
                G +PY C  CG+ F+    L  H+
Sbjct: 3  SGSSGTGQRPYECIECGKAFKTKSSLICHR 32

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 34.0 bits (79), Expect = 2e-04
 Identities = 10/43 (23%), Positives = 14/43 (32%), Gaps = 1/43 (2%)

Query: 9  VHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQC 51
                 G KPY C  C + F    +L  H+   H+       
Sbjct: 2  SSGSSGTGEKPYECNECQKAFNTKSNLMVHQ-RTHTGESGPSS 43

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A Length = 42

 Score = 34.2 bits (79), Expect = 2e-04
 Identities = 11/29 (37%), Positives = 13/29 (44%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYH 38
           +    G  PY C  CG+ F Q G L  H
Sbjct: 2  SSGSSGGETPYLCGQCGKSFTQRGSLAVH 30

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.0 bits (79), Expect = 2e-04
 Identities = 11/31 (35%), Positives = 13/31 (41%)

Query: 9  VHNRVHLGLKPYGCEVCGRHFRQWGDLKYHK 39
                 G KPY C VCG+ F     L  H+
Sbjct: 2  SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQ 32

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.0 bits (79), Expect = 2e-04
 Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE 52
                G KPY C  CG+ F Q   L  H+  +H+  K     
Sbjct: 3  SGSSGTGGKPYQCNECGKAFSQTSKLARHQ-RVHTGEKPSGPS 44

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.0 bits (79), Expect = 2e-04
 Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 1/42 (2%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQC 51
                G K + C  C + F Q   L  H+  +H+  K    
Sbjct: 3  SGSSGAGKKLFKCNECKKTFTQSSSLTVHQ-RIHTGEKPSGP 43

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.0 bits (79), Expect = 2e-04
 Identities = 10/30 (33%), Positives = 14/30 (46%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHK 39
                G KPY C+ CG+ F    +L  H+
Sbjct: 3  SGSSGSGEKPYVCDYCGKAFGLSAELVRHQ 32

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.0 bits (79), Expect = 2e-04
 Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE 52
                G KPY C  CG+ FR    L  H+  +H+  K     
Sbjct: 3  SGSSGTGEKPYKCNECGKVFRHNSYLSRHQR-IHTGEKPSGPS 44

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.0 bits (79), Expect = 3e-04
 Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE 52
                G KPY C  CG+ F Q   L  H+  +H+  K     
Sbjct: 3  SGSSGTGEKPYKCNECGKAFSQTSKLARHQ-RIHTGEKPSGPS 44

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 33.7 bits (78), Expect = 3e-04
 Identities = 10/29 (34%), Positives = 12/29 (41%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYH 38
                G KPY C  CG+ F     L+ H
Sbjct: 3  SGSSGTGEKPYKCSDCGKSFTWKSRLRIH 31

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 33.6 bits (78), Expect = 3e-04
 Identities = 11/30 (36%), Positives = 13/30 (43%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHK 39
                G KPY C  CG+ F Q   L  H+
Sbjct: 3  SGSSGTGEKPYICNECGKSFIQKSHLNRHR 32

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 33.6 bits (78), Expect = 3e-04
 Identities = 10/29 (34%), Positives = 12/29 (41%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYH 38
                G KPY C  CG+ F    +L  H
Sbjct: 3  SGSSGTGEKPYICAECGKAFTIRSNLIKH 31

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} Length = 46

 Score = 33.7 bits (78), Expect = 3e-04
 Identities = 8/30 (26%), Positives = 12/30 (40%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHK 39
               +G K + C  C   F Q   L+ H+
Sbjct: 3  SGSSGMGEKTWKCRECDMCFSQASSLRLHQ 32

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 33.7 bits (78), Expect = 3e-04
 Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 1/42 (2%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQC 51
                G + Y C  CG+ F Q   L  H+  +H   K    
Sbjct: 3  SGSSGTGERHYECSECGKAFIQKSTLSMHQ-RIHRGEKPSGP 43

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 33.6 bits (78), Expect = 3e-04
 Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 1/43 (2%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE 52
                G KPY C  CG+ F Q   L  H+  +H+ VK     
Sbjct: 3  SGSSGTGEKPYKCNECGKVFTQNSHLANHQ-RIHTGVKPSGPS 44

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 33.6 bits (78), Expect = 3e-04
 Identities = 8/29 (27%), Positives = 11/29 (37%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYH 38
                G  P+ C  CG+ F    +L  H
Sbjct: 3  SGSSGTGENPFICSECGKVFTHKTNLIIH 31

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 33.7 bits (78), Expect = 3e-04
 Identities = 10/30 (33%), Positives = 12/30 (40%)

Query: 9  VHNRVHLGLKPYGCEVCGRHFRQWGDLKYH 38
                 G KPY C  CG+ F +   L  H
Sbjct: 2  SSGSSGTGEKPYECSDCGKSFIKKSQLHVH 31

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 33.7 bits (78), Expect = 3e-04
 Identities = 8/29 (27%), Positives = 9/29 (31%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYH 38
                  K + C  CGR F     L  H
Sbjct: 3  SGSSGSSTKSHQCHECGRGFTLKSHLNQH 31

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A Length = 46

 Score = 33.6 bits (78), Expect = 3e-04
 Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 1/43 (2%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE 52
                G K Y C  CG+ F +   L  H+  +H+  K     
Sbjct: 3  SGSSGTGEKRYKCNECGKVFSRNSQLSQHQ-KIHTGEKPSGPS 44

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 33.6 bits (78), Expect = 3e-04
 Identities = 8/29 (27%), Positives = 11/29 (37%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYH 38
                G KP+ C  C + F    +L  H
Sbjct: 3  SGSSGTGEKPFECSECQKAFNTKSNLIVH 31

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 33.6 bits (78), Expect = 3e-04
 Identities = 11/30 (36%), Positives = 14/30 (46%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHK 39
                G KPY C  CG+ F Q  +L  H+
Sbjct: 3  SGSSGTGEKPYRCGECGKAFAQKANLTQHQ 32

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 33.7 bits (78), Expect = 3e-04
 Identities = 14/43 (32%), Positives = 15/43 (34%), Gaps = 1/43 (2%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE 52
                G KPYGC  CG+ F     L  H    HS  K     
Sbjct: 3  SGSSGAGEKPYGCSECGKAFSSKSYLIIHM-RTHSGEKPSGPS 44

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 33.6 bits (78), Expect = 3e-04
 Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 1/43 (2%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE 52
                G KP+ C  CG+ F     L  H+  +H+  K     
Sbjct: 3  SGSSGTGEKPFDCIDCGKAFSDHIGLNQHR-RIHTGEKPSGPS 44

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 33.6 bits (78), Expect = 4e-04
 Identities = 11/30 (36%), Positives = 12/30 (40%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHK 39
                G KPY C  CG+ F Q   L  H 
Sbjct: 3  SGSSGSGEKPYKCNECGKVFTQNSHLTNHW 32

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 33.6 bits (78), Expect = 4e-04
 Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 1/43 (2%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE 52
                G KPY C  CG+ FR+   L  H+  +H+  K     
Sbjct: 3  SGSSGTGEKPYKCHECGKVFRRNSHLARHQL-IHTGEKPSGPS 44

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 33.3 bits (77), Expect = 4e-04
 Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE 52
                G KPY C  CG+ F     L  H+A +H+  K     
Sbjct: 3  SGSSGTGEKPYECNQCGKAFSVRSSLTTHQA-IHTGKKPSGPS 44

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1} Length = 129

 Score = 34.9 bits (79), Expect = 4e-04
 Identities = 10/52 (19%), Positives = 15/52 (28%), Gaps = 3/52 (5%)

Query: 10  HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARK 61
                  +  + C +C   F     LK H   +        C  C K+F   
Sbjct: 65  RLLASKAISQFVCPLCLMPFSSSVSLKQH---IRYTEHTKVCPVCKKEFTST 113

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 33.3 bits (77), Expect = 4e-04
 Identities = 10/30 (33%), Positives = 11/30 (36%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHK 39
                G KPY C  CG+ F     L  H 
Sbjct: 3  SGSSGEGEKPYQCSECGKSFSGSYRLTQHW 32

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 48

 Score = 33.4 bits (77), Expect = 4e-04
 Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 3/45 (6%)

Query: 10 HNRVHLGLKPYGC--EVCGRHFRQWGDLKYHKASLHSDVKAFQCE 52
                G KP+ C    CG  F +  +L  H+   HS VK     
Sbjct: 3  SGSSGTGEKPFACTWPGCGWRFSRSDELSRHR-RSHSGVKPSGPS 46

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 33.3 bits (77), Expect = 4e-04
 Identities = 9/30 (30%), Positives = 11/30 (36%)

Query: 9  VHNRVHLGLKPYGCEVCGRHFRQWGDLKYH 38
                 G  PY C  CG+ F +   L  H
Sbjct: 2  SSGSSGTGENPYECHECGKAFSRKYQLISH 31

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A Length = 46

 Score = 33.3 bits (77), Expect = 4e-04
 Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 1/42 (2%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQC 51
                G KP+ C  CG+ F +   L  H   LH+  K    
Sbjct: 3  SGSSGTGEKPFKCVECGKGFSRRSALNVHHK-LHTGEKPSGP 43

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A Length = 46

 Score = 33.2 bits (77), Expect = 5e-04
 Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 1/43 (2%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE 52
                G KP+ C  CG+ F     L  H+  +H+  K     
Sbjct: 3  SGSSGTGEKPFECAECGKSFSISSQLATHQ-RIHTGEKPSGPS 44

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 33.2 bits (77), Expect = 5e-04
 Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE 52
                G KPY C  CG+ F +   L  H+  +H+  +     
Sbjct: 3  SGSSGSGEKPYKCSECGKAFHRHTHLNEHR-RIHTGYRPSGPS 44

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 33.2 bits (77), Expect = 5e-04
 Identities = 12/42 (28%), Positives = 15/42 (35%), Gaps = 1/42 (2%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQC 51
                G+KPY C  CG+ FR    L  H    H+       
Sbjct: 3  SGSSGTGMKPYVCNECGKAFRSKSYLIIHT-RTHTGESGPSS 43

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 33.2 bits (77), Expect = 5e-04
 Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE 52
                G KPY C  CG+ F Q   L  H+  +H+  K     
Sbjct: 3  SGSSGTGEKPYKCNECGKVFTQNSHLVRHRG-IHTGEKPSGPS 44

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 33.2 bits (77), Expect = 5e-04
 Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE 52
                G KPY C  CG+ F Q   L  H+  +H+  K     
Sbjct: 3  SGSSGTGEKPYKCNECGKVFTQNSHLARHR-GIHTGEKPSGPS 44

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 33.3 bits (77), Expect = 5e-04
 Identities = 8/29 (27%), Positives = 11/29 (37%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYH 38
                G K + C  CG+ F +   L  H
Sbjct: 3  SGSSGTGGKHFECTECGKAFTRKSTLSMH 31

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 32.9 bits (76), Expect = 5e-04
 Identities = 8/29 (27%), Positives = 11/29 (37%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYH 38
                G + Y C  CG+ F +   L  H
Sbjct: 3  SGSSGTGERHYECSECGKAFARKSTLIMH 31

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 32.9 bits (76), Expect = 6e-04
 Identities = 10/29 (34%), Positives = 12/29 (41%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYH 38
                G KPY C  CG+ F +   L  H
Sbjct: 3  SGSSGTGEKPYKCSDCGKAFTRKSGLHIH 31

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 32.9 bits (76), Expect = 6e-04
 Identities = 11/42 (26%), Positives = 14/42 (33%), Gaps = 1/42 (2%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQC 51
                G KP+ C+ CG +F     L  H  S H        
Sbjct: 3  SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRS-HERTDPSGP 43

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 32.9 bits (76), Expect = 6e-04
 Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE 52
                G KPY C  CG+ F Q   L  H+  +H+  K     
Sbjct: 3  SGSSGTGEKPYKCNECGKVFTQNSHLARHR-RVHTGGKPSGPS 44

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} Length = 46

 Score = 32.9 bits (76), Expect = 6e-04
 Identities = 8/29 (27%), Positives = 10/29 (34%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYH 38
                G+ PY C  C + F     L  H
Sbjct: 3  SGSSGAGVNPYKCSQCEKSFSGKLRLLVH 31

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 32.9 bits (76), Expect = 6e-04
 Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 1/42 (2%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQC 51
                G KPY C  CG+ F     L  H+ + H+ V     
Sbjct: 3  SGSSGSGEKPYECNECGKAFIWKSLLIVHERT-HAGVSGPSS 43

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 32.9 bits (76), Expect = 7e-04
 Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 1/42 (2%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQC 51
                G KP+ C  CG+ + Q   L  H+  +H+  K    
Sbjct: 3  SGSSGTGEKPFKCGECGKSYNQRVHLTQHQ-RVHTGEKPSGP 43

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 32.9 bits (76), Expect = 7e-04
 Identities = 12/42 (28%), Positives = 15/42 (35%), Gaps = 1/42 (2%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQC 51
                G KP  C  CG+ F     L  H+ + H D K    
Sbjct: 3  SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRT-HVDDKHSGP 43

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 32.9 bits (76), Expect = 7e-04
 Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 1/42 (2%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQC 51
                G +P+ C  CG+ F +   L  H   LHS  K+   
Sbjct: 3  SGSSGSGERPFKCNECGKGFGRRSHLAGHL-RLHSREKSSGP 43

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 32.9 bits (76), Expect = 7e-04
 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE 52
                G KPY C+ C + F Q G L  HK  +H+  ++    
Sbjct: 3  SGSSGSGKKPYECKECRKTFIQIGHLNQHK-RVHTGERSSGPS 44

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 32.6 bits (75), Expect = 8e-04
 Identities = 8/30 (26%), Positives = 14/30 (46%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHK 39
                G K + C+ CG++F     L+ H+
Sbjct: 3  SGSSGSGEKSHTCDECGKNFCYISALRIHQ 32

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 32.5 bits (75), Expect = 8e-04
 Identities = 7/29 (24%), Positives = 11/29 (37%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYH 38
                G + + C  CG+ F Q  +   H
Sbjct: 3  SGSSGHGERGHRCSDCGKFFLQASNFIQH 31

>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase, methyltransferase, guanylyltransferase, zinc finger, icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1 PDB: 2cse_V Length = 1275

 Score = 34.8 bits (79), Expect = 8e-04
 Identities = 10/41 (24%), Positives = 10/41 (24%), Gaps = 1/41 (2%)

Query: 8   KVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKA 48
                       Y C VC        DL  H AS H     
Sbjct: 169 VGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVAS-HGLHGN 208

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	71
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.9
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.88
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.86
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.86
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.85
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.85
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.83
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.83
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.83
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.83
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.82
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.82
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.82
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.82
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.81
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.8
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.8
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.79
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.79
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.79
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.78
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.78
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.78
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.78
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.78
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.77
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.77
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.77
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.77
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.76
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.76
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.76
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.75
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.75
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.75
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.75
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.75
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.75
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.74
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.73
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.73
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.73
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.73
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.73
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.71
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.7
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.69
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.69
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.69
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.68
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.67
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.66
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.66
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.66
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.66
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.66
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.66
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.66
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.66
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.65
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.65
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.65
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.65
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.65
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.65
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.65
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.65
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.65
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.65
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.65
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.65
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.65
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.65
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.65
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.65
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.65
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.65
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.65
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.65
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.65
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.64
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.64
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.64
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.64
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.64
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.64
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.64
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.64
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.64
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.64
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.64
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.64
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.64
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.64
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.64
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.63
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.63
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.63
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.63
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.63
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.62
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.62
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.62
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.62
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.6
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.6
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.6
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.59
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.59
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.58
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.57
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.57
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.57
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.57
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.57
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.57
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.57
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.57
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.57
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.56
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.56
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.56
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.56
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.56
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.56
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.56
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.56
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.56
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.56
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.56
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.56
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.56
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.56
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.56
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.56
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.56
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.55
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.55
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.55
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.55
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.55
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.55
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.55
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.54
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.54
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.54
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.54
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.54
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.54
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.54
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.54
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.53
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.53
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.53
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.53
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.52
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.51
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.51
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.51
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.51
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.51
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.5
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	99.5
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.49
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.49
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.49
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.48
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	99.48
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.47
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.47
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.46
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.43
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.41
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.41
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.39
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	99.37
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	99.37
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.36
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.34
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.34
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.34
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	99.32
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.3
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.29
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.27
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.27
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.26
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	99.24
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	99.21
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.21
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	99.18
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	99.18
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.17
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	99.16
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.15
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.15
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.14
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.11
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.11
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.1
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.1
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.09
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.09
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	99.09
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.08
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.08
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.08
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	99.08
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.08
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.07
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.07
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.07
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.06
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.06
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.06
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.06
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.06
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.06
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.06
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.06
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.06
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.06
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.06
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.06
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.06
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.06
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.06
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.06
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.06
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.05
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.05
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.05
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.05
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.05
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.05
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	99.05
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.05
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.04
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.04
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.04
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.04
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.04
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.04
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.04
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.04
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.04
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.04
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.04
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.04
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	99.04
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.04
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.04
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.04
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.03
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.03
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.03
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.03
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.03
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.03
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.03
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	99.03
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.03
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.03
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.03
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.03
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.03
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.02
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.02
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.02
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.02
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.02
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.02
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.02
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.02
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.02
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	99.02
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.02
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.01
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.01
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.01
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.01
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.01
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.01
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.01
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.01
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.0
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.0
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.0
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.0
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.0
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	99.0
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.0
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.0
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	98.99
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.99
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.99
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.99
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.99
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.99
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.99
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.99
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.99
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.99
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.98
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.98
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.98
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.97
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.97
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.97
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.96
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.96
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	98.95
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.95
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.92
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.92
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.92
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.91
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.9
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.9
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.9
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.89
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.89
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.88
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.84
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.84
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.83
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.83
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.83
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.82
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.82
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	98.31
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.81
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.81
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.8
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.8
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.79
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.78
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.77
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.77
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.76
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.76
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.75
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.75
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.75
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.73
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.72
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	98.18
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.71
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	98.18
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.7
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.7
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	98.16
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.69
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.69
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	98.14
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.68
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.67
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.65
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.65
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.62
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.59
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.57
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.57
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.97
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.55
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.54
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.54
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	98.5
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	98.46
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.45
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	98.35
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.32
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	98.32
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.08
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	97.82
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.68
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	97.52
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	97.44
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	96.88
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	95.96
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	95.26
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	95.12
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	94.72
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	94.61
2k5c_A	95	Uncharacterized protein PF0385; structural genomic	93.97
1yuz_A	202	Nigerythrin; rubrythrin, rubredoxin, hemerythrin,	93.94
2k9h_A	57	Glycoprotein; hantavirus, zinc finger, CCHC, metal	92.89
2jvx_A	28	NF-kappa-B essential modulator; CCHC classical zin	92.56
2gmg_A	105	Hypothetical protein PF0610; winged-helix like pro	92.52
2elu_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	92.41
4ayb_P	48	DNA-directed RNA polymerase; transferase, multi-su	91.84
3pwf_A	170	Rubrerythrin; non heme iron peroxidases, oxidative	91.22
3sp4_A	204	Aprataxin-like protein; HIT domain, zinc finger, D	90.96
2i5o_A	39	DNA polymerase ETA; zinc finger, DNA polymerase,PO	90.78
1lko_A	191	Rubrerythrin all-iron(II) form; reduced form, DIIR	88.86
1vq8_Z	83	50S ribosomal protein L37AE; ribosome 50S, protein	88.14
2kdx_A	119	HYPA, hydrogenase/urease nickel incorporation prot	87.95
2yuc_A	76	TNF receptor-associated factor 4; ZF-TRAF, cystein	87.23
3h0g_L	63	DNA-directed RNA polymerases I, II, and III subuni	85.19
1wir_A	121	Protein arginine N-methyltransferase 3; C2H2 zinc	84.66
1twf_L	70	ABC10-alpha, DNA-directed RNA polymerases I, II, a	84.32
2djr_A	76	Zinc finger BED domain-containing protein 2; C2H2	83.43
3iyl_X	1214	VP3; non-enveloped virus, membrane penetration pro	81.08
1gh9_A	71	8.3 kDa protein (gene MTH1184); beta+alpha complex	80.59

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.90  E-value=1.9e-24  Score=90.77  Aligned_cols=55  Identities=24%  Similarity=0.585  Sum_probs=52.4

Q ss_pred             CCCceecccccccccchhhHHHhHhhhcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         16 GLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        16 ~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      .|+||.|.+|++.|...+.|..|++ .|++++||.|.+||+.|...+.|..|++++
T Consensus         1 SEKpy~C~~C~k~F~~~~~L~~H~~-~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~H   55 (60)
T 4gzn_C            1 SERPFFCNFCGKTYRDASGLSRHRR-AHLGYRPRSCPECGKCFRDQSEVNRHLKVH   55 (60)
T ss_dssp             CCCCEECTTTCCEESSHHHHHHHHH-HHHTCCCEECTTTCCEESSHHHHHHHGGGG
T ss_pred             CCCCccCCCCCCEeCCHHHHHHHHH-HhCCCcCeECCCCCCCcCCHHHHHHHhCcc
Confidence            3799999999999999999999998 899999999999999999999999999874

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.88  E-value=2.1e-23  Score=99.36  Aligned_cols=69  Identities=26%  Similarity=0.364  Sum_probs=65.6

Q ss_pred             CcChHHHHHHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265          1 MEKFTYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus         1 f~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      |.....|..|+++|.+++||.|..|++.|.....|..|++ .|++++||.|+.|++.|.....|..|+++
T Consensus        32 F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~C~k~F~~~~~L~~H~~~  100 (133)
T 2lt7_A           32 YVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEI-HHTGERRYQCLACGKSFINYQFMSSHIKS  100 (133)
T ss_dssp             ESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHH-HHHTCCCEEESSSCCEESSHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhcc-ccCCCccccCCCCCCCcCCHHHHHHHhHH
Confidence            5678899999999999999999999999999999999998 89999999999999999999999999874

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.86  E-value=4.4e-22  Score=88.87  Aligned_cols=70  Identities=33%  Similarity=0.672  Sum_probs=65.8

Q ss_pred             CcChHHHHHHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265          1 MEKFTYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus         1 f~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      |.....|..|+++|.++++|.|..|++.|.....|..|++ .|.++++|.|..|++.|.....|..|++++
T Consensus        16 f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   85 (90)
T 1a1h_A           16 FSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHTKIH   85 (90)
T ss_dssp             ESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHH-HHHCCCCEECTTTCCEESSHHHHHHHHGGG
T ss_pred             cCCHHHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHH-HcCCCCCccCCCCCchhCCHHHHHHHHHHh
Confidence            5677899999999999999999999999999999999998 799999999999999999999999999863

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.86  E-value=3.4e-22  Score=87.89  Aligned_cols=69  Identities=29%  Similarity=0.641  Sum_probs=65.2

Q ss_pred             CcChHHHHHHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265          1 MEKFTYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus         1 f~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      |.....|..|+++|.++++|.|..|++.|.....|..|++ .|.++++|.|..|++.|.....|..|+++
T Consensus        11 f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   79 (82)
T 2kmk_A           11 FKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTF-IHTGEKPHKCQVCGKAFSQSSNLITHSRK   79 (82)
T ss_dssp             ESSHHHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHH-HHHTCCCEECTTTSCEESSHHHHHHHHHH
T ss_pred             ccCchhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHH-HhcCCCCCcCCCcchhhCChHHHHHHHHh
Confidence            5677899999999999999999999999999999999998 79999999999999999999999999975

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.85  E-value=1.8e-21  Score=87.79  Aligned_cols=70  Identities=29%  Similarity=0.503  Sum_probs=66.1

Q ss_pred             CcChHHHHHHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265          1 MEKFTYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus         1 f~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      |.....|..|+++|.++++|.|..|++.|.....|..|++ .|.++++|.|..|++.|.....|..|++++
T Consensus        18 f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h   87 (96)
T 2dmd_A           18 FSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLR-IHSDERPFKCQICPYASRNSSQLTVHLRSH   87 (96)
T ss_dssp             CCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHH-HSCCCCCEECSSSSCEESSHHHHHHHHTTC
T ss_pred             cCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHH-HhCCCCCccCCCCCCccCCHHHHHHHHHHh
Confidence            6678899999999999999999999999999999999998 799999999999999999999999999864

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.85  E-value=2e-21  Score=89.01  Aligned_cols=70  Identities=31%  Similarity=0.688  Sum_probs=66.0

Q ss_pred             CcChHHHHHHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265          1 MEKFTYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus         1 f~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      |.....|..|+++|.++++|.|..|++.|.....|..|++ .|.++++|.|..|++.|.....|..|++++
T Consensus        27 f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H   96 (106)
T 2ee8_A           27 FTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRY-IHSKEKPFKCQECGKGFCQSRTLAVHKTLH   96 (106)
T ss_dssp             CSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGG-GSCCCCTTSCSSSCCCCSSHHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHH-HhCCCCCeECCCcCCcccCHHHHHHHHHHh
Confidence            6678899999999999999999999999999999999998 899999999999999999999999999764

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.83  E-value=4.5e-21  Score=89.21  Aligned_cols=70  Identities=36%  Similarity=0.682  Sum_probs=54.7

Q ss_pred             CcChHHHHHHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeC--ChhhHhhhchHHHHHhhhcC
Q psy12265          1 MEKFTYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQC--EYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus         1 f~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C--~~c~~~f~~~~~l~~h~~~~   71 (71)
                      |.....|..|+++|.++++|.|..|++.|.....|..|++ .|.++++|.|  +.|++.|.....|..|++++
T Consensus        48 f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           48 FSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTR-THTGEKPFSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             ESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHH-HHHTCCCEECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             cCCHHHHHHHHHHcCCCCCccCCccCchhCCHHHHHHHHH-HhcCCCCeeCCCCCCccccCCHHHHHHHHhcC
Confidence            4556777788888888888888888888888888888876 6777788888  67888888888888887754

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.83  E-value=7.5e-21  Score=87.63  Aligned_cols=69  Identities=32%  Similarity=0.678  Sum_probs=65.1

Q ss_pred             CcChHHHHHHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265          1 MEKFTYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus         1 f~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      |.....|..|++.|.++++|.|..|++.|.....|..|++ .|.++++|.|..|++.|.....|..|++.
T Consensus        19 f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   87 (110)
T 2csh_A           19 FTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK-IHTGIKPYECNICAKRFMWRDSFHRHVTS   87 (110)
T ss_dssp             ESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHT-TTCCCCCEECSSSCCEESCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHH-HcCCCCCeeCCCCcchhcCHHHHHHHHHH
Confidence            5677899999999999999999999999999999999998 79999999999999999999999999874

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.83  E-value=4.6e-21  Score=86.95  Aligned_cols=67  Identities=15%  Similarity=0.143  Sum_probs=61.2

Q ss_pred             ChHHHHHHHhHhhCCCceecccccccc-cchhhHHHhHhhhcCCcCceeCChhhHhhhchHHHHHh-hhcC
Q psy12265          3 KFTYLKVHNRVHLGLKPYGCEVCGRHF-RQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHSY-HQIR   71 (71)
Q Consensus         3 ~~~~l~~h~~~~~~~~~~~c~~c~~~~-~~~~~l~~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h-~~~~   71 (71)
                      ....+..|++.+.++++|.|..|++.| ....+|..|++ .| ++++|.|.+|++.|.....|..| ++++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~-~h-~~k~~~C~~Cgk~F~~~~~L~~H~~~~H   86 (96)
T 2ctd_A           18 AGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHME-NC-KQEMFTCHHCGKQLRSLAGMKYHVMANH   86 (96)
T ss_dssp             TTCHHHHHHHHHHHTSCEECTTTCSCEESSHHHHHHHHH-HH-CCCCCCCSSSCCCCSSHHHHHHHHHHHT
T ss_pred             CchHHHHHHHHhcCCCCcCCCCCCCCcccCHHHHHHHHH-HH-CCCCeECCCCCCeeCCHHHHHHHhHHhc
Confidence            456778899999999999999999999 99999999998 78 99999999999999999999999 7653

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.83  E-value=4.5e-21  Score=85.43  Aligned_cols=70  Identities=33%  Similarity=0.599  Sum_probs=65.2

Q ss_pred             CcChHHHHHHHhHhhCCCceecc--cccccccchhhHHHhHhhhcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265          1 MEKFTYLKVHNRVHLGLKPYGCE--VCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus         1 f~~~~~l~~h~~~~~~~~~~~c~--~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      |.....|..|+++|.++++|.|.  .|++.|.....|..|++ .|.++++|.|+.|++.|.....|..|++++
T Consensus        17 f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   88 (89)
T 2wbs_A           17 YTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR-KHTGHRPFQCQKCDRAFSRSDHLALHMKRH   88 (89)
T ss_dssp             ESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHH-HHHCCCCEECSSSSCEESSHHHHHHHGGGG
T ss_pred             CCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHH-HcCCCCCccCCCCCcccCCHHHHHHHHHhh
Confidence            56778999999999999999997  69999999999999997 799999999999999999999999999864

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.82  E-value=6.8e-22  Score=86.34  Aligned_cols=64  Identities=31%  Similarity=0.535  Sum_probs=58.1

Q ss_pred             HHHHHhHhhCCCceecccccccccchhhHHHhHhhhcCCc-CceeCChhhHhhhchHHHHHhhhc
Q psy12265          7 LKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDV-KAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus         7 l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~-~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      +..|+++|.+++||.|..|++.|.....|..|++..|.++ ++|.|..|++.|.....|..|++.
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~   67 (77)
T 2ct1_A            3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK   67 (77)
T ss_dssp             CCCCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHH
Confidence            4568899999999999999999999999999986467765 899999999999999999999875

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.82  E-value=1.4e-20  Score=84.73  Aligned_cols=68  Identities=32%  Similarity=0.664  Sum_probs=63.4

Q ss_pred             CcChHHHHHHHhHhhCCCceecccccccccchhhHHHhHhhhcCCc--CceeCChhhHhhhchHHHHHhhh
Q psy12265          1 MEKFTYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDV--KAFQCEYCGKDFARKYQAHSYHQ   69 (71)
Q Consensus         1 f~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~--~~~~C~~c~~~f~~~~~l~~h~~   69 (71)
                      |.....|..|+++|.++++|.|..|++.|.....|..|++ .|.++  ++|.|..|++.|.....|..|++
T Consensus        17 f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~~~C~~C~~~f~~~~~L~~H~~   86 (95)
T 2yt9_A           17 FRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVR-SHDGSVGKPYICQSCGKGFSRPDHLNGHIK   86 (95)
T ss_dssp             ESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHH-HHCCCCCSSBCCSSSCCCBSSHHHHHHHHH
T ss_pred             cCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHH-HhcCCCCCceECCCccchhCCHHHHHHHHH
Confidence            5667899999999999999999999999999999999998 78776  89999999999999999999986

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.82  E-value=1.7e-20  Score=93.18  Aligned_cols=70  Identities=31%  Similarity=0.715  Sum_probs=57.6

Q ss_pred             CcChHHHHHHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265          1 MEKFTYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus         1 f~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      |.....|..|+++|.++++|.|..|++.|.....|..|++ .|.++++|.|+.|++.|.....|..|++++
T Consensus       115 f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~-~H~~~~~~~C~~C~~~f~~~~~L~~H~~~H  184 (190)
T 2i13_A          115 FSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQR-THTGEKPYKCPECGKSFSRRDALNVHQRTH  184 (190)
T ss_dssp             ESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHH-HHHCCCCEECTTTCCEESSHHHHHHHHTTC
T ss_pred             cCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHHHH-hcCCCCCeECCCCCCccCCHHHHHHHHHhc
Confidence            4566778888888888888888888888888888888887 688888888888888888888888888753

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.82  E-value=1.6e-20  Score=85.19  Aligned_cols=69  Identities=33%  Similarity=0.573  Sum_probs=64.6

Q ss_pred             CcChHHHHHHHhHhhCCCceecc--cccccccchhhHHHhHhhhcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265          1 MEKFTYLKVHNRVHLGLKPYGCE--VCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus         1 f~~~~~l~~h~~~~~~~~~~~c~--~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      |.....|..|+++|.++++|.|.  .|++.|.....|..|++ .|.++++|.|..|++.|.....|..|+++
T Consensus        27 f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   97 (100)
T 2ebt_A           27 YTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYR-KHTGAKPFQCGVCNRSFSRSDHLALHMKR   97 (100)
T ss_dssp             ESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHH-HHTSCCSCBCSSSCCBCSSHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHH-HhCCCCCeECCCCcCccCCHHHHHHHHHH
Confidence            56678999999999999999996  69999999999999998 79999999999999999999999999985

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.81  E-value=7.5e-22  Score=89.72  Aligned_cols=66  Identities=20%  Similarity=0.189  Sum_probs=60.8

Q ss_pred             hHHHHHHHhHhhCCCceeccccccccc-chhhHHHhHhhhcCC-cCceeCChhhHhhhchHHHHHhhhc
Q psy12265          4 FTYLKVHNRVHLGLKPYGCEVCGRHFR-QWGDLKYHKASLHSD-VKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus         4 ~~~l~~h~~~~~~~~~~~c~~c~~~~~-~~~~l~~h~~~~~~~-~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      ...+..|+++|.++++|.|..|++.|. ....|..|++ .|.+ +++|.|.+|++.|.....|..|+++
T Consensus         9 ~~~~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~-~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~   76 (98)
T 2gqj_A            9 GGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHME-VCQKLQDALKCQHCRKQFKSKAGLNYHTMA   76 (98)
T ss_dssp             CCSCSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHH-HHHHHHHHHSCSSSCCCCSCHHHHHHHHHH
T ss_pred             CCcHHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHH-HHcCCCCCEECCCCCCccCCHHHHHHHHHH
Confidence            355678999999999999999999999 9999999998 7887 8999999999999999999999864

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.80  E-value=1.6e-20  Score=81.10  Aligned_cols=59  Identities=34%  Similarity=0.716  Sum_probs=55.5

Q ss_pred             HhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265         11 NRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        11 ~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      .++|.+++||.|..|++.|.....|..|++ .|.++++|.|..|++.|.....|..|+++
T Consensus         6 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~h~~~~~~~C~~C~~~f~~~~~L~~H~~~   64 (72)
T 1x6e_A            6 SGIHSGEKPYGCVECGKAFSRSSILVQHQR-VHTGEKPYKCLECGKAFSQNSGLINHQRI   64 (72)
T ss_dssp             CCTTTTCCCEECSSSCCEESSHHHHHHHHH-GGGCSCCEECSSSCCEESSHHHHHHHHHH
T ss_pred             CcccCCCCCccCCCCCCccCCHHHHHHHHH-hcCCCCCeECCCCCcccCCHHHHHHHHHh
Confidence            457889999999999999999999999998 79999999999999999999999999875

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.80  E-value=1.8e-20  Score=83.33  Aligned_cols=57  Identities=23%  Similarity=0.402  Sum_probs=52.5

Q ss_pred             hHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChhhHhhhchHHHHHhhh
Q psy12265         12 RVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQ   69 (71)
Q Consensus        12 ~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~   69 (71)
                      ..+...++|.|.+|++.|.....|.+|++ .|++++||.|.+|++.|.....|..|++
T Consensus        21 ~~~~~~~~h~C~~Cgk~F~~~~~L~~H~~-~H~~~k~~~C~~C~k~F~~~~~L~~H~~   77 (85)
T 2lv2_A           21 GLSASAECHLCPVCGESFASKGAQERHLR-LLHAAQVFPCKYCPATFYSSPGLTRHIN   77 (85)
T ss_dssp             SSCCCCTTEECTTSCCEESSHHHHHHHHH-TTSCSSSEECTTSSCEESSHHHHHHHHH
T ss_pred             CCCCCCCCEECCCCCCCcCcHHHHhhhhh-hccCCCccCCCCCCCEeCCHHHHHHhCc
Confidence            34556788999999999999999999998 8999999999999999999999999975

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.79  E-value=6.5e-20  Score=85.26  Aligned_cols=69  Identities=36%  Similarity=0.706  Sum_probs=64.9

Q ss_pred             CcChHHHHHHHhHhhCCCceecc--cccccccchhhHHHhHhhhcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265          1 MEKFTYLKVHNRVHLGLKPYGCE--VCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus         1 f~~~~~l~~h~~~~~~~~~~~c~--~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      |.....|..|+++|.++++|.|.  .|++.|.....|..|++ .|.++++|.|..|++.|.....|..|+++
T Consensus        18 f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   88 (119)
T 2jp9_A           18 YFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQR-RHTGVKPFQCKTCQRKFSRSDHLKTHTRT   88 (119)
T ss_dssp             BSCHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHH-HHHCCCCEECTTTCCEESCHHHHHHHHHH
T ss_pred             hCCHHHHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHH-HcCCCCCccCCccCchhCCHHHHHHHHHH
Confidence            56778999999999999999999  79999999999999998 79999999999999999999999999875

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.79  E-value=3e-20  Score=78.91  Aligned_cols=60  Identities=28%  Similarity=0.600  Sum_probs=54.1

Q ss_pred             HhHhhCCCceecccccccccchhhHHHhHhhhc-CCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265         11 NRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLH-SDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        11 ~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~-~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      +++|.+++||.|..|++.|....+|..|++..| .++++|.|+.|++.|.....|..|+++
T Consensus         2 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~   62 (66)
T 2drp_A            2 EFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI   62 (66)
T ss_dssp             -CEEEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHH
T ss_pred             ccccCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHH
Confidence            357889999999999999999999999998337 689999999999999999999999875

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.79  E-value=2.1e-19  Score=86.76  Aligned_cols=70  Identities=30%  Similarity=0.565  Sum_probs=57.6

Q ss_pred             CcChHHHHHHHhHhhCCCceeccc--ccccccchhhHHHhHhhhcCCcCceeCCh--hhHhhhchHHHHHhhhc
Q psy12265          1 MEKFTYLKVHNRVHLGLKPYGCEV--CGRHFRQWGDLKYHKASLHSDVKAFQCEY--CGKDFARKYQAHSYHQI   70 (71)
Q Consensus         1 f~~~~~l~~h~~~~~~~~~~~c~~--c~~~~~~~~~l~~h~~~~~~~~~~~~C~~--c~~~f~~~~~l~~h~~~   70 (71)
                      |.....|..|+++|.++++|.|..  |++.|.....|..|+...|+++++|.|..  |++.|.....|..|+++
T Consensus        79 f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~  152 (155)
T 2gli_A           79 YSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKT  152 (155)
T ss_dssp             CSSHHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCCEECCSTTTCCEESSHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCCeeCCCCCCccccCCHHHHHHHHHh
Confidence            566778888888888888888887  88888888888888733788888888877  88888888888888875

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.78  E-value=2.7e-19  Score=86.44  Aligned_cols=70  Identities=34%  Similarity=0.672  Sum_probs=63.3

Q ss_pred             CcChHHHHHHHhHhhCCCceeccc--ccccccchhhHHHhHhhhcCCcCceeCCh--hhHhhhchHHHHHhhhcC
Q psy12265          1 MEKFTYLKVHNRVHLGLKPYGCEV--CGRHFRQWGDLKYHKASLHSDVKAFQCEY--CGKDFARKYQAHSYHQIR   71 (71)
Q Consensus         1 f~~~~~l~~h~~~~~~~~~~~c~~--c~~~~~~~~~l~~h~~~~~~~~~~~~C~~--c~~~f~~~~~l~~h~~~~   71 (71)
                      |.....|..|+++|.++++|.|..  |++.|.....|..|++ .|.++++|.|..  |++.|.....|..|++++
T Consensus        72 f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~-~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H  145 (155)
T 2rpc_A           72 FKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKR-THTGEKPFKCEFEGCDRRFANSSDRKKHMHVH  145 (155)
T ss_dssp             CSSHHHHHHHTHHHHCCCSEECSCTTTCCEESCHHHHHHHHT-TTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTT
T ss_pred             cCCHHHHHHHHHhcCCCCcccCCcCCCCCccCCHHHHHHHHH-hhCCCCCccCCCCCCCCccCCHHHHHHHHHHh
Confidence            567788999999999999999988  9999999999999988 799999999997  999999999999998764

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.78  E-value=3.9e-20  Score=81.90  Aligned_cols=66  Identities=33%  Similarity=0.552  Sum_probs=57.7

Q ss_pred             HHHHHHhHhhCCCceecccccccccchhhHHHhHhhhcCCc---CceeCChhhHhhhchHHHHHhhhcC
Q psy12265          6 YLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDV---KAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus         6 ~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~---~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      ++..|+++|.+++||.|..|++.|.....|..|++..+...   ++|.|..|++.|.....|..|++++
T Consensus         2 s~~~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h   70 (86)
T 1x6h_A            2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNC   70 (86)
T ss_dssp             TTTCCSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHC
T ss_pred             CcccccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHc
Confidence            45678999999999999999999999999999987334333   7899999999999999999999763

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.78  E-value=1.3e-19  Score=80.72  Aligned_cols=68  Identities=22%  Similarity=0.486  Sum_probs=61.9

Q ss_pred             CcChHHHHHHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265          1 MEKFTYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus         1 f~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      |.....|..|+++|.+++||.|..|++.|.....|..|+. .+. ..+|.|..|++.|.....|..|++.
T Consensus        13 f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~-~h~-~~~~~c~~C~~~f~~~~~L~~H~~~   80 (88)
T 1llm_C           13 FSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRD-IQH-ILPILEDKVEELLSKNYHLENEVAR   80 (88)
T ss_dssp             ESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHH-HHT-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHH-HhC-CCcchHHHHHHHHHHHhhhHHHHHH
Confidence            5677899999999999999999999999999999999998 565 3789999999999999999999863

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.78  E-value=1e-19  Score=78.10  Aligned_cols=57  Identities=19%  Similarity=0.392  Sum_probs=53.4

Q ss_pred             HhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265         13 VHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        13 ~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      .+.++++|.|..|++.|.....|..|++ .|.++++|.|.+|++.|.....|..|+++
T Consensus         3 s~~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~C~~~f~~~~~L~~H~~~   59 (70)
T 1x5w_A            3 SGSSGHPEKCSECSYSCSSKAALRIHER-IHCTDRPFKCNYCSFDTKQPSNLSKHMKK   59 (70)
T ss_dssp             SCCCCCSEECSSSSCEESSHHHHHHHHG-GGCCSCSEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHH-HcCCCCCEeCCCCCCccCCHHHHHHHHHH
Confidence            4678899999999999999999999998 79999999999999999999999999875

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.78  E-value=6.8e-21  Score=90.69  Aligned_cols=59  Identities=27%  Similarity=0.388  Sum_probs=55.6

Q ss_pred             HhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265         11 NRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        11 ~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      ..+++|+++|.|.+|++.|.....|..|++ .|++++||.|..|++.|.....|..|+++
T Consensus        14 ~~~h~Gek~y~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~C~k~F~~~~~L~~H~~~   72 (133)
T 2lt7_A           14 ELIVDGRVYYICIVCKRSYVCLTSLRRHFN-IHSWEKKYPCRYCEKVFPLAEYRTKHEIH   72 (133)
T ss_dssp             EEEETTEEEEEETTTCCEESCHHHHHHHHH-HHHCCSCEECSSSSCEESSHHHHHHHHHH
T ss_pred             eeecCCCcCeECCCCCCCcCCHHHHHHHHH-HcCCCCCeeCCccCeecccccchhhhccc
Confidence            457889999999999999999999999998 89999999999999999999999999875

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.77  E-value=4.8e-19  Score=82.73  Aligned_cols=68  Identities=22%  Similarity=0.423  Sum_probs=39.4

Q ss_pred             CcChHHHHHHHhH---hhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChhhHhhhchHHHHHhhh
Q psy12265          1 MEKFTYLKVHNRV---HLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQ   69 (71)
Q Consensus         1 f~~~~~l~~h~~~---~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~   69 (71)
                      |.....|..|+..   +.++++|.|..|++.|.....|..|++ .|.++++|.|+.|++.|.....|..|++
T Consensus        45 f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~  115 (124)
T 2dlq_A           45 YFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMV-SHTGEMPYKCSSCSQQFMQKKDLQSHMI  115 (124)
T ss_dssp             CSSHHHHHHHHHHCCCCSCCCCEECSSSCCEESSHHHHHHHHH-HHSSSCSEECSSSCCEESSHHHHHHHHH
T ss_pred             hcCHHHHHHHHhhhhcCCCCCCeECCCCCCccCCHHHHHHHHH-HcCCCCCccCCCccchhCCHHHHHHHHH
Confidence            3344555555553   344555666666666666666666655 5666666666666666666666666654

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.77  E-value=5.7e-20  Score=76.05  Aligned_cols=54  Identities=28%  Similarity=0.503  Sum_probs=48.1

Q ss_pred             CCCceecccccccccchhhHHHhHhhhcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265         16 GLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        16 ~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      +++||.|..|++.|.....|..|++ .|++++||.|+.|++.|.....|..|+++
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   54 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLR-THTGEKPYKCEFCEYAAAQKTSLRYHLER   54 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHH-HHHCCCCEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCCCccCCCCcchhCChHHHHHHHH-HcCCCCCcCCCCCcchhCCHHHHHHHHHH
Confidence            4689999999999999999999998 79999999999999999999999999875

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.77  E-value=5.7e-19  Score=82.48  Aligned_cols=70  Identities=31%  Similarity=0.602  Sum_probs=64.1

Q ss_pred             CcChHHHHHHHhHhhCCCceecccccccccchhhHHHhHhh--hcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265          1 MEKFTYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKAS--LHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus         1 f~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~--~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      |.....|..|+++|.++++|.|..|++.|.....|..|+..  .+.++++|.|+.|++.|.....|..|+++
T Consensus        17 f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~   88 (124)
T 2dlq_A           17 FLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVS   88 (124)
T ss_dssp             CSSHHHHHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCccCCHHHHHHHHHH
Confidence            67788999999999999999999999999999999999873  25678999999999999999999999875

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.77  E-value=2.8e-19  Score=88.82  Aligned_cols=69  Identities=35%  Similarity=0.766  Sum_probs=49.2

Q ss_pred             CcChHHHHHHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265          1 MEKFTYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus         1 f~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      |.....|..|+++|.++++|.|..|++.|.....|..|++ .|.++++|.|+.|++.|.....|..|+++
T Consensus        87 f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~L~~H~~~  155 (190)
T 2i13_A           87 FSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQR-THTGEKPYKCPECGKSFSREDNLHTHQRT  155 (190)
T ss_dssp             ESCHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHHH-HHHCCCCEECTTTCCEESCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHH-HhCCCCCeECCCCCcccCCHHHHHHHHHh
Confidence            3455667777777777777777777777777777777776 57777777777777777777777777653

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.76  E-value=5.4e-19  Score=83.34  Aligned_cols=65  Identities=20%  Similarity=0.271  Sum_probs=57.5

Q ss_pred             ChHHHHHHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265          3 KFTYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus         3 ~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      ....|..|+ .|.+++||.|..|++.|.....|..|++ .|  ++||.|..|++.|.....|..|++++
T Consensus        59 ~~~~l~~h~-~h~~~~~~~C~~C~k~f~~~~~l~~H~~-~H--~~~~~C~~C~k~f~~~~~l~~H~~~h  123 (129)
T 2wbt_A           59 ESSYLYRLL-ASKAISQFVCPLCLMPFSSSVSLKQHIR-YT--EHTKVCPVCKKEFTSTDSALDHVCKK  123 (129)
T ss_dssp             THHHHHHHH-HHHHHCSEECTTTCCEESSHHHHHHHHH-HT--CCCCBCTTTCCBCSSHHHHHHHHHHT
T ss_pred             CHHHHHHHH-HhCCCCCeECCCCCcccCCHhHHHHHHH-HC--CCCCCCCCCCcccCCHHHHHHHHHHH
Confidence            445566666 5888999999999999999999999998 68  88999999999999999999999763

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.76  E-value=3.1e-19  Score=77.29  Aligned_cols=57  Identities=33%  Similarity=0.720  Sum_probs=53.3

Q ss_pred             HhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265         13 VHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        13 ~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      .+.++++|.|..|++.|.....|..|++ .|.++++|.|..|++.|.....|..|+++
T Consensus        11 ~~~~~~~~~C~~C~k~f~~~~~l~~H~~-~H~~~~~~~C~~C~k~f~~~~~L~~H~~~   67 (74)
T 2lce_A           11 MTHSDKPYKCDRCQASFRYKGNLASHKT-VHTGEKPYRCNICGAQFNRPANLKTHTRI   67 (74)
T ss_dssp             CCCCCCSBCCTTSSCCBSCHHHHHHHHH-HHCCCCSEECTTTCCEESCHHHHHHHHHH
T ss_pred             ccCCCCCeECCCCCceeCCHHHHHHHHH-HcCCCCCEECCCCCchhCCHHHHHHHHHh
Confidence            4567899999999999999999999998 79999999999999999999999999875

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.76  E-value=9.6e-19  Score=81.87  Aligned_cols=66  Identities=32%  Similarity=0.580  Sum_probs=31.6

Q ss_pred             ChHHHHHHHhHhhCCCceeccc--ccccccchhhHHHhHhhhcCCcCceeCC--hhhHhhhchHHHHHhhh
Q psy12265          3 KFTYLKVHNRVHLGLKPYGCEV--CGRHFRQWGDLKYHKASLHSDVKAFQCE--YCGKDFARKYQAHSYHQ   69 (71)
Q Consensus         3 ~~~~l~~h~~~~~~~~~~~c~~--c~~~~~~~~~l~~h~~~~~~~~~~~~C~--~c~~~f~~~~~l~~h~~   69 (71)
                      ....|..|+++|.++++|.|..  |++.|.....|..|++ .|.++++|.|+  .|++.|.....|..|++
T Consensus        46 ~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~  115 (124)
T 1ubd_C           46 ESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVR-IHTGDRPYVCPFDGCNKKFAQSTNLKSHIL  115 (124)
T ss_dssp             SHHHHHHHGGGTSCCCCEECCSTTCCCEESCHHHHHHHHH-HHHCCCCCCCCSTTCCCCCSSTTTTHHHHH
T ss_pred             CHHHHHHHHHHcCCCCCeeCCCCCCcCccCCHHHHHHHHH-HhCCCCceECCCCCCCCccCCHHHHHHHHH
Confidence            3444444444444444555542  5555555555555544 44444445553  25555555555554443

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.75  E-value=9.7e-19  Score=77.11  Aligned_cols=67  Identities=25%  Similarity=0.364  Sum_probs=61.8

Q ss_pred             CcChHHHHHHHhHhhCCCceeccc--ccccccchhhHHHhHhhhcCCcCceeCCh---hhHhhhchHHHHHhhhcC
Q psy12265          1 MEKFTYLKVHNRVHLGLKPYGCEV--CGRHFRQWGDLKYHKASLHSDVKAFQCEY---CGKDFARKYQAHSYHQIR   71 (71)
Q Consensus         1 f~~~~~l~~h~~~~~~~~~~~c~~--c~~~~~~~~~l~~h~~~~~~~~~~~~C~~---c~~~f~~~~~l~~h~~~~   71 (71)
                      |.....|..|+++|.+++||.|..  |++.|.....|..|++ .|++   |.|..   |++.|.....|..|++++
T Consensus        13 f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~-~h~~---~~C~~~~~C~~~f~~~~~l~~H~~~h   84 (85)
T 2j7j_A           13 FKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK-VHAG---YPCKKDDSCSFVGKTWTLYLKHVAEC   84 (85)
T ss_dssp             ESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHH-HHHS---EECCSCSSCCCEESSHHHHHHHHHHC
T ss_pred             cCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHH-HhCC---CCCCCCCCCCCccCCHHHHHHHHHhc
Confidence            567789999999999999999988  9999999999999998 6877   99999   999999999999999863

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.75  E-value=7.9e-19  Score=80.56  Aligned_cols=65  Identities=15%  Similarity=0.276  Sum_probs=60.1

Q ss_pred             CcChHHHHHHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChhhHhhhchHHHHHhhh
Q psy12265          1 MEKFTYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQ   69 (71)
Q Consensus         1 f~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~   69 (71)
                      |.....|..|+++|  +++|.|..|++.|.....|..|+.  |.++++|.|..|++.|.....|..|++
T Consensus        26 f~~~~~l~~H~~~H--~~~~~C~~C~~~f~~~~~l~~H~~--H~~~~~~~C~~C~~~f~~~~~L~~H~~   90 (107)
T 1wjp_A           26 LSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHES--KCEYKKLTCLECMRTFKSSFSIWRHQV   90 (107)
T ss_dssp             CSSHHHHHHHHHHH--HHSBCCTTTCCCBSSHHHHHHHHH--HCSTGGGEEGGGTEECSSHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHC--CCCccCCCCCCccCCHHHHHHHHH--cCCCCCccCccccchhCCHHHHHHHHH
Confidence            56778999999998  479999999999999999999983  999999999999999999999999996

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.75  E-value=3.4e-19  Score=83.39  Aligned_cols=68  Identities=29%  Similarity=0.638  Sum_probs=63.2

Q ss_pred             CcChHHHHHHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCCh--hhHhhhchHHHHHhhhc
Q psy12265          1 MEKFTYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEY--CGKDFARKYQAHSYHQI   70 (71)
Q Consensus         1 f~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~--c~~~f~~~~~l~~h~~~   70 (71)
                      |.....|..|+++| ++++|.|..|++.|.....|..|++ .|.++++|.|..  |++.|.....|..|+++
T Consensus        17 f~~~~~l~~H~~~h-~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~   86 (124)
T 1ubd_C           17 FRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQL-VHTGEKPFQCTFEGCGKRFSLDFNLRTHVRI   86 (124)
T ss_dssp             ESSHHHHHHHHGGG-SCCCEECTTTCCEESSHHHHHHHGG-GTSCCCCEECCSTTCCCEESCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHc-CCCCeECCCCCchhCCHHHHHHHHH-HcCCCCCeeCCCCCCcCccCCHHHHHHHHHH
Confidence            56778999999999 8899999999999999999999998 899999999985  99999999999999874

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.75  E-value=1.1e-18  Score=72.11  Aligned_cols=52  Identities=31%  Similarity=0.598  Sum_probs=49.0

Q ss_pred             ceecccccccccchhhHHHhHhhhcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         19 PYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        19 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      ||.|..|++.|.....|..|++ .|.++++|.|..|++.|.....|..|++++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h   52 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIR-THTDVRPYHCTYCNFSFKTKGNLTKHMKSK   52 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHH-HTSSCCCEECSSSSCEESSHHHHHHHHHSS
T ss_pred             CCcCCCCcCcCCCHHHHHHHHH-hcCCCCCccCCCCCchhcCHHHHHHHHHHh
Confidence            6899999999999999999998 799999999999999999999999999764

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.75  E-value=1.1e-18  Score=76.05  Aligned_cols=58  Identities=28%  Similarity=0.681  Sum_probs=53.5

Q ss_pred             HhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         13 VHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        13 ~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      .+.++++|.|..|++.|.....|..|++ .|.++++|.|.+|++.|.....|..|++++
T Consensus        12 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H   69 (77)
T 2cot_A           12 QQRERRRYKCDECGKSFSHSSDLSKHRR-THTGEKPYKCDECGKAFIQRSHLIGHHRVH   69 (77)
T ss_dssp             CCCCSCSSBCSSSCCBCSCHHHHHHHHT-TTCCSCSEECSSSCCEESSHHHHHHHGGGS
T ss_pred             cCCCCCCEECCCCCcccCCHHHHHHHHH-HcCCCcCeeCCCCCCccCCHHHHHHHHHHh
Confidence            3557889999999999999999999998 799999999999999999999999999864

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.75  E-value=3.6e-19  Score=77.72  Aligned_cols=55  Identities=31%  Similarity=0.673  Sum_probs=51.5

Q ss_pred             hhCCCceecccccccccchhhHHHhHhhhcCC---cCceeCChhhHhhhchHHHHHhhh
Q psy12265         14 HLGLKPYGCEVCGRHFRQWGDLKYHKASLHSD---VKAFQCEYCGKDFARKYQAHSYHQ   69 (71)
Q Consensus        14 ~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~---~~~~~C~~c~~~f~~~~~l~~h~~   69 (71)
                      |.+++||.|..|++.|.....|..|++ .|.+   +++|.|..|++.|.....|..|++
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~-~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~   59 (78)
T 2d9h_A            2 SSGSSGLQCEICGFTCRQKASLNWHQR-KHAETVAALRFPCEFCGKRFEKPDSVAAHRS   59 (78)
T ss_dssp             CCSCCCEECSSSCCEESSHHHHHHHHH-HHHHHTTTCCEECTTTCCEESSHHHHHHHHH
T ss_pred             CCCCcCeECCCCCCeeCCHHHHHHHHH-HhhccCCCcccCCCCCCchhCCHHHHHHHHH
Confidence            678999999999999999999999998 6875   799999999999999999999985

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.74  E-value=1.1e-18  Score=76.18  Aligned_cols=57  Identities=33%  Similarity=0.692  Sum_probs=48.9

Q ss_pred             CcChHHHHHHHh-HhhCCCceeccc--ccccccchhhHHHhHhhhcCCcCceeCChhhHhh
Q psy12265          1 MEKFTYLKVHNR-VHLGLKPYGCEV--CGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDF   58 (71)
Q Consensus         1 f~~~~~l~~h~~-~~~~~~~~~c~~--c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f   58 (71)
                      |.....|..|++ .|.++++|.|..  |++.|.....|..|++ .|+++++|.|..|++.|
T Consensus        19 f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~C~k~F   78 (79)
T 2dlk_A           19 FSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK-LHSDTRDYICEFSGPSS   78 (79)
T ss_dssp             ESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHH-HHHTSCCCSCCSSSCCC
T ss_pred             cCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHH-HhCCCCCeeCCCCCCCC
Confidence            456778888988 688888999988  9999999999999987 78888899999998876

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.73  E-value=2.9e-18  Score=71.48  Aligned_cols=51  Identities=31%  Similarity=0.634  Sum_probs=48.2

Q ss_pred             CceecccccccccchhhHHHhHhhhcCCcCceeCChhhHhhhchHHHHHhhh
Q psy12265         18 KPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQ   69 (71)
Q Consensus        18 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~   69 (71)
                      +||.|..|++.|.....|..|++ .|+++++|.|..|++.|.....|..|++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~   51 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYR-SHTNEKPYPCGLCNRAFTRRDLLIRHAQ   51 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHH-TTTSSCSEECTTTCCEESSHHHHHHHHT
T ss_pred             CcCcCCCCccccCCHHHHHHHHH-HhCCCCCccCCCCCCccCCHHHHHHHHH
Confidence            58999999999999999999998 7999999999999999999999999963

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.73  E-value=3.8e-19  Score=82.45  Aligned_cols=69  Identities=16%  Similarity=0.187  Sum_probs=58.4

Q ss_pred             CcChHHHHHHHhH--hhCCCce-ecccccccc--cchhhHHHhHhhhcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265          1 MEKFTYLKVHNRV--HLGLKPY-GCEVCGRHF--RQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus         1 f~~~~~l~~h~~~--~~~~~~~-~c~~c~~~~--~~~~~l~~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      |.....|..|+++  |.+++++ .|..|++.|  .....|..|++ .|++++||.|.+|++.|.....|..|++.
T Consensus        29 f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~-~H~~~~~~~C~~C~k~f~~~~~L~~H~~~  102 (115)
T 2dmi_A           29 YDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEG-KEDAQKVLKCMYCGHSFESLQDLSVHMIK  102 (115)
T ss_dssp             ESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCC-SCCCCSSCBCSSSCCBCSSHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhh-ccCCCcceECCCCCCccCCHHHHHHHHHH
Confidence            5567888889888  6666664 488999888  88888888887 78899999999999999999999999875

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.73  E-value=3.6e-18  Score=82.41  Aligned_cols=67  Identities=30%  Similarity=0.546  Sum_probs=59.9

Q ss_pred             CcChHHHHHHHhHhhCCCceeccc--ccccccchhhHHHhHhhhcCCcCceeCCh--hhHhhhchHHHHHhh
Q psy12265          1 MEKFTYLKVHNRVHLGLKPYGCEV--CGRHFRQWGDLKYHKASLHSDVKAFQCEY--CGKDFARKYQAHSYH   68 (71)
Q Consensus         1 f~~~~~l~~h~~~~~~~~~~~c~~--c~~~~~~~~~l~~h~~~~~~~~~~~~C~~--c~~~f~~~~~l~~h~   68 (71)
                      |.....|..|+++|.+++||.|..  |++.|.....|..|++ .|.++++|.|+.  |++.|.....|..|+
T Consensus        49 f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~~~C~~~f~~~~~L~~H~  119 (155)
T 2gli_A           49 FKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLR-SHTGEKPYMCEHEGCSKAFSNASDRAKHQ  119 (155)
T ss_dssp             CSSHHHHHHHTHHHHCCCCCCCCSTTCCCCCSSHHHHHHHHH-HTTTCCCEECCSTTCCCEESSSSTTHHHH
T ss_pred             hhhHHHHHHHHHhcCCCCCccCCCCCCCCcccCHHHHHHHHH-HcCCCCCeeCCCCCCCCccCCHHHHHHHH
Confidence            566788999999999999999985  9999999999999987 788999999998  999999999999997

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.73  E-value=1.8e-18  Score=74.62  Aligned_cols=65  Identities=26%  Similarity=0.554  Sum_probs=55.5

Q ss_pred             HHHHHHh-HhhCCCceecc--cccccccchhhHHHhHhhhcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265          6 YLKVHNR-VHLGLKPYGCE--VCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus         6 ~l~~h~~-~~~~~~~~~c~--~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      .+..|.. ++.++++|.|.  .|++.|.....|..|++ .|.++++|.|..|++.|.....|..|++++
T Consensus         5 ~~~~~~~~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   72 (73)
T 1f2i_G            5 PMNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTH   72 (73)
T ss_dssp             ---CTTSCCCCCCCCEECSSTTBCCEESSHHHHHHHHH-HHHCCCCEECTTTCCEESCHHHHHHHHTTC
T ss_pred             CccchhhccCCCCCccCCcCCCCCCccCCHHHHHHHHH-hhCCCCCeECCCCCchhCCHHHHHHHHHhc
Confidence            3444433 57788999997  69999999999999998 799999999999999999999999999864

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.73  E-value=3.5e-18  Score=78.19  Aligned_cols=56  Identities=16%  Similarity=0.173  Sum_probs=49.5

Q ss_pred             hCCCceecccccccccchhhHHHhHhhhc---CCcCceeCChhhHhhhchHHHHHh-hhc
Q psy12265         15 LGLKPYGCEVCGRHFRQWGDLKYHKASLH---SDVKAFQCEYCGKDFARKYQAHSY-HQI   70 (71)
Q Consensus        15 ~~~~~~~c~~c~~~~~~~~~l~~h~~~~~---~~~~~~~C~~c~~~f~~~~~l~~h-~~~   70 (71)
                      .+++||.|..|++.|...+.|..|++..|   .+++||.|..||+.|.....|..| +++
T Consensus        14 ~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~   73 (102)
T 2ghf_A           14 KVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKY   73 (102)
T ss_dssp             CCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHT
T ss_pred             CCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHh
Confidence            47899999999999999999999986348   568899999999999999999999 664

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.71  E-value=9.1e-18  Score=83.35  Aligned_cols=68  Identities=26%  Similarity=0.560  Sum_probs=37.6

Q ss_pred             cChHHHHHHH-hHh-hCCCceec--ccccccccchhhHHHhHhhhcCCcCceeCCh--hhHhhhchHHHHHhhhc
Q psy12265          2 EKFTYLKVHN-RVH-LGLKPYGC--EVCGRHFRQWGDLKYHKASLHSDVKAFQCEY--CGKDFARKYQAHSYHQI   70 (71)
Q Consensus         2 ~~~~~l~~h~-~~~-~~~~~~~c--~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~--c~~~f~~~~~l~~h~~~   70 (71)
                      .....|..|+ +.| .++.+|.|  ..|++.|.....|..|++ .|+++++|.|+.  |++.|.....|..|+++
T Consensus        85 ~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~~~C~k~F~~~~~L~~H~~~  158 (190)
T 1tf6_A           85 TTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQF-SHTQQLPYECPHEGCDKRFSLPSRLKRHEKV  158 (190)
T ss_dssp             SCHHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHG-GGSSSCSSBCCSSSCCCBCSSHHHHHHHHTS
T ss_pred             CCHHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHH-HhCCCCCccCCCCCCCchhcCHHHHHHHHHH
Confidence            3445555555 344 24455555  555555555555555555 455555666655  66666666666666553

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.70  E-value=2.6e-17  Score=81.70  Aligned_cols=67  Identities=30%  Similarity=0.496  Sum_probs=46.9

Q ss_pred             CcChHHHHHHHhHhhCCCceec--ccccccccchhhHHHhHhhhcCCcCceeCC--hhhHhhhchHHHHHhh
Q psy12265          1 MEKFTYLKVHNRVHLGLKPYGC--EVCGRHFRQWGDLKYHKASLHSDVKAFQCE--YCGKDFARKYQAHSYH   68 (71)
Q Consensus         1 f~~~~~l~~h~~~~~~~~~~~c--~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~--~c~~~f~~~~~l~~h~   68 (71)
                      |.....|..|+++|.++++|.|  ..|++.|.....|..|++ .|.++++|.|.  .|++.|.....|..|+
T Consensus        24 f~~~~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~~~C~~~f~~~~~l~~H~   94 (190)
T 1tf6_A           24 YNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSL-THTGEKNFTCDSDGCDLRFTTKANMKKHF   94 (190)
T ss_dssp             CSSHHHHHHHHHHHHCCCSSCCSSTTCCCCCSSHHHHHHHHT-TTTTCCCEECCSSSCCCEESCHHHHHHHH
T ss_pred             hCCHHHHHHHHHhcCCCCCccCCCCCCChhhCCHHHHHHHHH-HccCCCceeCCCCCCCCccCCHHHHHHHH
Confidence            4556667777777777777777  667777777777777766 56666777776  6777777777777776

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.69  E-value=1.2e-17  Score=70.92  Aligned_cols=54  Identities=15%  Similarity=0.319  Sum_probs=50.0

Q ss_pred             hCCCceecccccccccchhhHHHhHhhhcCCcCceeCC-hhhHhhhchHHHHHhhhcC
Q psy12265         15 LGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE-YCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        15 ~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~-~c~~~f~~~~~l~~h~~~~   71 (71)
                      .+++||.|..|++.|. ...|..|++ . ++++||.|. .|++.|.....|..|++++
T Consensus         6 C~~~~~~C~~C~k~f~-~~~L~~H~~-~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~h   60 (66)
T 2eod_A            6 SGKRTQPCTYCTKEFV-FDTIQSHQY-Q-CPRLPVACPNQCGVGTVAREDLPGHLKDS   60 (66)
T ss_dssp             CCCCEEECSSSCCEEE-HHHHHHHHH-H-CSSSEEECTTCCSCCEEETTTHHHHHHTT
T ss_pred             CCCCCeeccccCCccC-HHHHHHHHH-H-cCCcCccCCcccCcccccHHHHHHHHHhh
Confidence            4678999999999999 999999998 6 899999999 9999999999999999863

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.69  E-value=1.5e-19  Score=76.16  Aligned_cols=61  Identities=16%  Similarity=0.423  Sum_probs=52.2

Q ss_pred             HHHHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265          7 LKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus         7 l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      |..|+++|.+++||.|..|++.|.....|.   + .|++++||.|..|++.|.....+..+..+|
T Consensus         2 L~~h~~~H~~~k~~~C~~C~k~F~~~~~l~---~-~H~~~k~~~C~~C~k~f~~~~~~~~~~~tr   62 (62)
T 1vd4_A            2 IETDERDSTNRASFKCPVCSSTFTDLEANQ---L-FDPMTGTFRCTFCHTEVEEDESAMPKKDAR   62 (62)
T ss_dssp             CCCCSSSCCSSSEEECSSSCCEEEHHHHHH---H-EETTTTEEBCSSSCCBCEECTTCSCCCCCC
T ss_pred             hhhHHHHcCCCCCccCCCCCchhccHHHhH---h-hcCCCCCEECCCCCCccccCccccccccCC
Confidence            345788899999999999999999988876   4 799999999999999999988877665443

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.69  E-value=1.3e-17  Score=74.19  Aligned_cols=53  Identities=34%  Similarity=0.775  Sum_probs=50.2

Q ss_pred             CCceecccccccccchhhHHHhHhhhcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265         17 LKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        17 ~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      ++||.|..|++.|.....|..|++ .|.++++|.|..|++.|.....|..|+++
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~C~k~f~~~~~L~~H~~~   53 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHRDI   53 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHH-HHHCCCCEECTTTCCEESSHHHHHHHHHH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHH-HcCCCCCccCCCCCCccCCHHHHHHHHHH
Confidence            579999999999999999999998 79999999999999999999999999864

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.68  E-value=7e-17  Score=67.60  Aligned_cols=46  Identities=30%  Similarity=0.641  Sum_probs=42.5

Q ss_pred             CcChHHHHHHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcC
Q psy12265          1 MEKFTYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVK   47 (71)
Q Consensus         1 f~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~   47 (71)
                      |.....|..|+++|++++||.|..|++.|...++|..|++ +|+|++
T Consensus        14 F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~-~Htgep   59 (60)
T 4gzn_C           14 YRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLK-VHQNKP   59 (60)
T ss_dssp             ESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGG-GGSCC-
T ss_pred             eCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhC-ccCCCC
Confidence            5678899999999999999999999999999999999998 899874

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.67  E-value=3.7e-17  Score=78.95  Aligned_cols=70  Identities=27%  Similarity=0.460  Sum_probs=62.8

Q ss_pred             CcChHHHHHHHhH-hhCCCc--------eecccccccccchhhHHHhHhhhcCCcCceeCCh--hhHhhhchHHHHHhhh
Q psy12265          1 MEKFTYLKVHNRV-HLGLKP--------YGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEY--CGKDFARKYQAHSYHQ   69 (71)
Q Consensus         1 f~~~~~l~~h~~~-~~~~~~--------~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~--c~~~f~~~~~l~~h~~   69 (71)
                      |.....|..|++. |.++.+        |.|..|++.|.....|..|++ .|.++++|.|..  |++.|.....|..|++
T Consensus        35 f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~  113 (155)
T 2rpc_A           35 FSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIR-VHTGEKPFPCPFPGCGKIFARSENLKIHKR  113 (155)
T ss_dssp             BSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTH-HHHCCCSEECSCTTTCCEESCHHHHHHHHT
T ss_pred             cCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHH-hcCCCCcccCCcCCCCCccCCHHHHHHHHH
Confidence            5678899999997 776655        799999999999999999998 799999999998  9999999999999987


Q ss_pred             cC
Q psy12265         70 IR   71 (71)
Q Consensus        70 ~~   71 (71)
                      ++
T Consensus       114 ~h  115 (155)
T 2rpc_A          114 TH  115 (155)
T ss_dssp             TT
T ss_pred             hh
Confidence            63

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.66  E-value=2.7e-17  Score=65.31  Aligned_cols=45  Identities=31%  Similarity=0.520  Sum_probs=41.8

Q ss_pred             HHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChh
Q psy12265          9 VHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYC   54 (71)
Q Consensus         9 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c   54 (71)
                      .|+++|.+++||.|..|++.|...+.|..|++ .|++++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~C   46 (46)
T 2eml_A            2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQR-IHSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHG-GGSSCCCSCSSCC
T ss_pred             CccCCcCCCCCeeCCCcCCccCCHHHHHHHHH-HhcCCCCCCCCCC
Confidence            36788999999999999999999999999998 8999999999887

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.66  E-value=2.7e-17  Score=65.34  Aligned_cols=44  Identities=23%  Similarity=0.395  Sum_probs=41.3

Q ss_pred             HHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChh
Q psy12265         10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYC   54 (71)
Q Consensus        10 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c   54 (71)
                      |+++|.+++||.|..|++.|.....|..|++ .|++++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~c   46 (46)
T 2emf_A            3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQK-IHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSSSSSCCEECSSSCCEESCHHHHHHHGG-GTSCSSCSCCCCC
T ss_pred             cccccCCCCCeECCCCCchhCCHHHHHHHHH-HhCCCCCCCCCCC
Confidence            6788999999999999999999999999998 8999999999876

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.66  E-value=2.9e-17  Score=65.19  Aligned_cols=45  Identities=29%  Similarity=0.490  Sum_probs=41.8

Q ss_pred             HHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChh
Q psy12265          9 VHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYC   54 (71)
Q Consensus         9 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c   54 (71)
                      +|+++|.+++||.|..|++.|...+.|..|++ .|++++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~C   46 (46)
T 2el4_A            2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQR-SHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSSCEESSHHHHHHHGG-GSSSCCCSCCTTC
T ss_pred             ccccCCCCCCceECCCCCchhCCHHHHHHHHH-HhCCCCCCCCCCC
Confidence            36788999999999999999999999999998 8999999999887

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.66  E-value=3.3e-17  Score=65.05  Aligned_cols=45  Identities=27%  Similarity=0.524  Sum_probs=41.8

Q ss_pred             HHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChh
Q psy12265          9 VHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYC   54 (71)
Q Consensus         9 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c   54 (71)
                      .|+++|.+++||.|..|++.|...++|..|++ .|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~c   46 (46)
T 2ep2_A            2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQ-IHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSSCSSCCCSEECSSSCCEESSHHHHHHHHH-TTSSCCSCCSCCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCCHHHHHHHHH-HhCCCCCCCCCCC
Confidence            36788999999999999999999999999998 8999999999876

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.66  E-value=2.2e-17  Score=65.01  Aligned_cols=44  Identities=25%  Similarity=0.403  Sum_probs=40.9

Q ss_pred             HHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChh
Q psy12265         10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYC   54 (71)
Q Consensus        10 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c   54 (71)
                      |+++|.+++||.|..|++.|...++|..|++ .|+++++|.|..|
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~C   44 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQ-THAEEKPSGPSSG   44 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHHH-HHTSSCSCSCCCC
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHHH-HhCCCCCCCCCCC
Confidence            4678899999999999999999999999998 7999999999887

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.66  E-value=4.1e-17  Score=64.78  Aligned_cols=45  Identities=27%  Similarity=0.429  Sum_probs=41.8

Q ss_pred             HHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChh
Q psy12265          9 VHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYC   54 (71)
Q Consensus         9 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c   54 (71)
                      .|+++|.+++||.|..|++.|...++|..|++ .|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~c   46 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQK-IHTKQKPSGPSSG   46 (46)
T ss_dssp             CSSCTTSSCCSEECSSSCCEESSHHHHHHHHH-HTSCCCCSSCSCC
T ss_pred             CcccCCCCCcCeECCCCChhhCCHHHHHHHHH-HcCCCCCCCCCCC
Confidence            36788999999999999999999999999998 8999999999876

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.66  E-value=2.7e-17  Score=65.28  Aligned_cols=45  Identities=29%  Similarity=0.366  Sum_probs=41.8

Q ss_pred             HHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChh
Q psy12265          9 VHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYC   54 (71)
Q Consensus         9 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c   54 (71)
                      .|+++|.+++||.|..|++.|....+|..|++ .|++++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~C   46 (46)
T 2eq4_A            2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHER-LHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCCCCCBTTTTBCCSCHHHHHHHHH-HCCSSSCCCCCCC
T ss_pred             CCcccCCCCCCeECCCCCCccCchHHHHHHHH-hcCCCCCCCCCCC
Confidence            36788999999999999999999999999998 8999999999887

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.66  E-value=2.6e-17  Score=65.36  Aligned_cols=45  Identities=29%  Similarity=0.488  Sum_probs=41.7

Q ss_pred             HHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChh
Q psy12265          9 VHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYC   54 (71)
Q Consensus         9 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c   54 (71)
                      .|+++|.+++||.|..|++.|....+|..|++ .|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~C   46 (46)
T 2ytn_A            2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRG-IHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSSCBCTTTCCBCSSHHHHHHHGG-GTSCCCCCSCCCC
T ss_pred             CCCcCCCCCcCeECCCCCCeeCCHHHHHHHhh-hcCCCCCCCCCCC
Confidence            36778999999999999999999999999998 8999999999987

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.65  E-value=3.1e-17  Score=65.14  Aligned_cols=44  Identities=30%  Similarity=0.503  Sum_probs=41.3

Q ss_pred             HHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChh
Q psy12265         10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYC   54 (71)
Q Consensus        10 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c   54 (71)
                      |+++|.+++||.|..|++.|...+.|..|++ .|++++||.|.+|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~c   46 (46)
T 2eq0_A            3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQL-IHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCEECTTTCCEESSHHHHHHHHT-TTCCCCCSCCSCC
T ss_pred             CCcCCCCCCCeECCCCCchhCCHHHHHHHHH-HcCCCCCCCCCCC
Confidence            6778999999999999999999999999998 7999999999987

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.65  E-value=2.7e-17  Score=65.32  Aligned_cols=44  Identities=30%  Similarity=0.489  Sum_probs=41.4

Q ss_pred             HHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChh
Q psy12265         10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYC   54 (71)
Q Consensus        10 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c   54 (71)
                      |+++|.+++||.|..|++.|...+.|..|++ .|++++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~C   46 (46)
T 2ene_A            3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQR-IHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCSSSEECSSSCCEESSHHHHHHHHT-TTCCCCCCSCCCC
T ss_pred             cccCCCCCCCeECCCCCchhCChHHHHHHHh-hcCCCCCCCCCCC
Confidence            6778999999999999999999999999998 7999999999987

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.65  E-value=3e-17  Score=65.17  Aligned_cols=45  Identities=22%  Similarity=0.347  Sum_probs=41.7

Q ss_pred             HHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChh
Q psy12265          9 VHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYC   54 (71)
Q Consensus         9 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c   54 (71)
                      .|+++|.+++||.|..|++.|...++|..|++ .|++++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~~~~~C~~C   46 (46)
T 2em0_A            2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQN-VHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCCCCCSSSCCCCSSHHHHHHHGG-GGSSSSCSCSSCC
T ss_pred             CCcCccCCCcCeECCCCCcccCCHHHHHHHHH-HcCCCCCcCCCCC
Confidence            36788999999999999999999999999998 7999999999887

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.65  E-value=4.5e-17  Score=64.62  Aligned_cols=45  Identities=27%  Similarity=0.444  Sum_probs=41.9

Q ss_pred             HHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChh
Q psy12265          9 VHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYC   54 (71)
Q Consensus         9 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c   54 (71)
                      .|+++|.+++||.|..|++.|.....|..|++ .|++++||.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~C   46 (46)
T 2eme_A            2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQR-IHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCSEECSSSCCEESSHHHHHHHHG-GGCCCSCCSSCCC
T ss_pred             CCCCCCCCCCCeECCCCChhhCCHHHHHHHHH-hcCCCCCCCCCCC
Confidence            36788999999999999999999999999998 8999999999987

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.65  E-value=2.6e-17  Score=65.30  Aligned_cols=45  Identities=24%  Similarity=0.376  Sum_probs=41.8

Q ss_pred             HHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChh
Q psy12265          9 VHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYC   54 (71)
Q Consensus         9 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c   54 (71)
                      .|+++|.+++||.|..|++.|...+.|..|++ .|++++||.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~C   46 (46)
T 2emm_A            2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQR-IHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESSHHHHHHHHH-HHSCCCTTSSSCC
T ss_pred             CCcCCcCCCCCeeCCCCChhhCCHHHHHHHHH-HhCCCCCCCCCCC
Confidence            36788999999999999999999999999998 7999999999987

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.65  E-value=2.7e-17  Score=65.26  Aligned_cols=45  Identities=31%  Similarity=0.507  Sum_probs=41.8

Q ss_pred             HHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChh
Q psy12265          9 VHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYC   54 (71)
Q Consensus         9 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c   54 (71)
                      +|+++|.+++||.|..|++.|...+.|..|++ .|++++||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~-~H~~~~~~~C~~C   46 (46)
T 2eoe_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQR-IHTGVKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSSEETTTTEECSSHHHHHHHHG-GGSCCCSCSSCCC
T ss_pred             CCCCCCCCCCCeECCCcChhhCCHHHHHHHHH-HcCCCCCCCCCCC
Confidence            36788999999999999999999999999998 8999999999987

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.65  E-value=3.3e-17  Score=65.03  Aligned_cols=45  Identities=24%  Similarity=0.403  Sum_probs=41.7

Q ss_pred             HHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChh
Q psy12265          9 VHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYC   54 (71)
Q Consensus         9 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c   54 (71)
                      .|+++|.+++||.|..|++.|....+|..|++ .|++++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~c   46 (46)
T 2ema_A            2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQK-IHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCSSCTTSCCEECSSSCCEESSHHHHHHHHT-GGGCCCCCSSSCC
T ss_pred             CCccCCCCCcCcCCCCCcchhCCHHHHHHHHH-hcCCCCCCCCCCC
Confidence            36788999999999999999999999999998 7999999999876

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.65  E-value=3.1e-17  Score=65.12  Aligned_cols=44  Identities=25%  Similarity=0.434  Sum_probs=41.3

Q ss_pred             HHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChh
Q psy12265         10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYC   54 (71)
Q Consensus        10 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c   54 (71)
                      |+++|.+++||.|..|++.|....+|..|++ .|++++||.|.+|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~C   46 (46)
T 2epz_A            3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRR-IHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCSBCCTTTCCCBSSHHHHHHHHT-TTTTCCCCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCceeCCHHHHHHHHH-HhCCCCCCCCCCC
Confidence            5778999999999999999999999999998 8999999999987

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.65  E-value=6e-17  Score=66.36  Aligned_cols=49  Identities=22%  Similarity=0.396  Sum_probs=43.9

Q ss_pred             HhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChhhHhhhch
Q psy12265         13 VHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARK   61 (71)
Q Consensus        13 ~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f~~~   61 (71)
                      .+.+++||.|..|++.|.....|..|++..|+++++|.|.+|++.|+++
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~~   54 (54)
T 2eps_A            6 SGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSSG   54 (54)
T ss_dssp             CCCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCCC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCCC
Confidence            4667899999999999999999999985479999999999999999753

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.65  E-value=2.9e-17  Score=65.19  Aligned_cols=45  Identities=24%  Similarity=0.372  Sum_probs=41.7

Q ss_pred             HHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChh
Q psy12265          9 VHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYC   54 (71)
Q Consensus         9 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c   54 (71)
                      .|+++|.+++||.|..|++.|...+.|..|++ .|++++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~C   46 (46)
T 2emy_A            2 SSGSSGTGENPYECHECGKAFSRKYQLISHQR-THAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSSCCEECSSSCCEESSHHHHHHHHH-HHTTSCCSCSSCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCcHHHHHHHHH-HcCCCCCCCCCCC
Confidence            36788999999999999999999999999998 7999999999887

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.65  E-value=4.1e-17  Score=64.74  Aligned_cols=44  Identities=32%  Similarity=0.462  Sum_probs=41.3

Q ss_pred             HHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChh
Q psy12265         10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYC   54 (71)
Q Consensus        10 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c   54 (71)
                      |+++|.+++||.|..|++.|.....|..|++ .|++++||.|.+|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~C   46 (46)
T 2em9_A            3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQR-VHSGEKPSGPSSG   46 (46)
T ss_dssp             SCCSCCCCCSEECSSSCCEESSHHHHHHHGG-GGTSCCCCSTTCC
T ss_pred             CCCCCCCCcCeECCccccccCChHHHHHHHH-HhCCCCCCCCCCC
Confidence            6788999999999999999999999999998 8999999999887

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.65  E-value=2.9e-17  Score=65.24  Aligned_cols=44  Identities=27%  Similarity=0.465  Sum_probs=41.3

Q ss_pred             HHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChh
Q psy12265         10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYC   54 (71)
Q Consensus        10 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c   54 (71)
                      |+++|.+++||.|..|++.|.....|..|++ .|++++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~C   46 (46)
T 2ely_A            3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHK-LHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSTTHHHHHHH-HHSCCSSCSCCCC
T ss_pred             CCCCCCCCCCcccCccCcccCCHHHHHHHHH-HcCCCCCCCCCCC
Confidence            6778999999999999999999999999998 7999999999887

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.65  E-value=3.3e-17  Score=65.06  Aligned_cols=44  Identities=25%  Similarity=0.385  Sum_probs=41.2

Q ss_pred             HHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChh
Q psy12265         10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYC   54 (71)
Q Consensus        10 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c   54 (71)
                      |+++|.+++||.|..|++.|....+|..|++ .|++++||.|.+|
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~~~~~C~~C   46 (46)
T 2elz_A            3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQR-VHMGEKTSGPSSG   46 (46)
T ss_dssp             CCSCCCCCSSCBCSSSCCBCSSHHHHHHHGG-GGGSCCCCCSCCC
T ss_pred             CCCCCCCCCCeeCcccCchhCCHHHHHHHHH-hcCCCCCCCCCCC
Confidence            5678999999999999999999999999998 8999999999987

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.65  E-value=3.2e-17  Score=65.09  Aligned_cols=45  Identities=29%  Similarity=0.429  Sum_probs=41.7

Q ss_pred             HHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChh
Q psy12265          9 VHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYC   54 (71)
Q Consensus         9 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c   54 (71)
                      .|+++|.+++||.|..|++.|...+.|..|++ .|++++||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~c   46 (46)
T 2ytk_A            2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWR-IHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSEECSSSCCEESSHHHHHHHHH-HHSSSSCSSCCCC
T ss_pred             CCcccCCCCCCEeCCcCCCccCCHHHHHHHHH-HHCCCCCCCCCCC
Confidence            36788999999999999999999999999998 8999999999887

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.65  E-value=2.8e-17  Score=65.27  Aligned_cols=45  Identities=29%  Similarity=0.449  Sum_probs=41.7

Q ss_pred             HHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChh
Q psy12265          9 VHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYC   54 (71)
Q Consensus         9 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c   54 (71)
                      .|+++|.+++||.|..|++.|...+.|..|++ .|++++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~C   46 (46)
T 2emk_A            2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQR-VHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSSCSCBCSSSCCBCSCHHHHHHHHH-HHSSCCCSSCCCC
T ss_pred             CCCCccCCCCceECCCCCchhCCHHHHHHHHH-HcCCCCCCCCCCC
Confidence            36778999999999999999999999999998 7999999999887

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.65  E-value=4.5e-17  Score=64.65  Aligned_cols=45  Identities=29%  Similarity=0.482  Sum_probs=41.9

Q ss_pred             HHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChh
Q psy12265          9 VHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYC   54 (71)
Q Consensus         9 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c   54 (71)
                      .|+++|.+++||.|..|++.|...++|..|++ .|++++||.|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~C   46 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQR-VHTGEKPSGPSSG   46 (46)
T ss_dssp             CSTTCCCCCCSEEETTTTEEESSHHHHHHHGG-GGSCCCCSCCCCC
T ss_pred             CcccCCCCCCCeeCCCCCcccCCHHHHHHHHH-HcCCCCCCCCCCC
Confidence            36788999999999999999999999999998 8999999999887

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.65  E-value=4e-17  Score=64.79  Aligned_cols=44  Identities=32%  Similarity=0.462  Sum_probs=41.2

Q ss_pred             HHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChh
Q psy12265         10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYC   54 (71)
Q Consensus        10 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c   54 (71)
                      |+++|.+++||.|..|++.|.....|..|++ .|++++||.|.+|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~C   46 (46)
T 2em7_A            3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHM-VHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSCCCSEECSSSCCEESCHHHHHHHGG-GGTTCCCSSTTCC
T ss_pred             CCCCCCCCcCccCCCccchhCCHHHHHHHHH-HhCCCCCCCCCCC
Confidence            5778999999999999999999999999998 8999999999887

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.65  E-value=3.4e-17  Score=64.98  Aligned_cols=45  Identities=22%  Similarity=0.343  Sum_probs=41.7

Q ss_pred             HHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChh
Q psy12265          9 VHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYC   54 (71)
Q Consensus         9 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c   54 (71)
                      .|+++|.+++||.|..|++.|....+|..|++ .|++++||.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~C   46 (46)
T 2eop_A            2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQR-IHTGENPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSCBCTTTCCBCSSHHHHHHHHT-TTTTSCCSCCCCC
T ss_pred             CCccccCCCCCeeCCCCCchhCCHHHHHHHHH-HcCCCCCCCCCCC
Confidence            36788999999999999999999999999998 7999999999887

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.65  E-value=3.5e-17  Score=65.01  Aligned_cols=45  Identities=22%  Similarity=0.293  Sum_probs=41.8

Q ss_pred             HHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChh
Q psy12265          9 VHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYC   54 (71)
Q Consensus         9 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c   54 (71)
                      .|+++|.+++||.|..|++.|...++|..|++ .|++++||.|.+|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~C   46 (46)
T 2em5_A            2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQR-IHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSCSEECSSSCCEESSHHHHHHHHT-TTSCSCCSSCCCC
T ss_pred             CCcCCCCCCCCeECCcCCCccCCHHHHHHHHH-HhCCCCCCCCCCC
Confidence            36788999999999999999999999999998 7999999999987

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.65  E-value=3.9e-17  Score=64.85  Aligned_cols=44  Identities=32%  Similarity=0.452  Sum_probs=41.2

Q ss_pred             HHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChh
Q psy12265         10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYC   54 (71)
Q Consensus        10 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c   54 (71)
                      |+++|.+++||.|..|++.|.....|..|++ .|++++||.|.+|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~C   46 (46)
T 2ytq_A            3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMR-THSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCSSCCCSCBCSSSCCBCSCHHHHHHHHT-TTCCSCSSCCCCC
T ss_pred             CCcCcCCCCCcCCCccChhhCChHHHHHHHH-HhCCCCCCCCCCC
Confidence            5678999999999999999999999999998 7999999999887

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.65  E-value=4e-17  Score=64.77  Aligned_cols=45  Identities=27%  Similarity=0.324  Sum_probs=41.7

Q ss_pred             HHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChh
Q psy12265          9 VHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYC   54 (71)
Q Consensus         9 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c   54 (71)
                      .|+++|.+++||.|..|++.|...+.|..|++ .|+++++|.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~C   46 (46)
T 2epw_A            2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQR-THVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSSHHHHHHHH-HCCSCCCSCCCCC
T ss_pred             cCcccCCCCCCeeCCCCCCccCCHHHHHHHHH-HhCCCCCCCCCCC
Confidence            36778999999999999999999999999998 7999999999887

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.64  E-value=3.7e-17  Score=64.89  Aligned_cols=45  Identities=24%  Similarity=0.464  Sum_probs=41.7

Q ss_pred             HHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChh
Q psy12265          9 VHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYC   54 (71)
Q Consensus         9 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c   54 (71)
                      .|+++|.+++||.|..|++.|...+.|..|++ .|++++||.|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~C   46 (46)
T 2eoq_A            2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSM-VHTAEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSCCCSSSCCCCSSHHHHHHHHH-HTTCCCSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCcCCchhCCHHHHHHHHH-HcCCCCCCCCCCC
Confidence            36778999999999999999999999999998 7999999999887

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.64  E-value=3.9e-17  Score=64.84  Aligned_cols=45  Identities=24%  Similarity=0.483  Sum_probs=41.7

Q ss_pred             HHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChh
Q psy12265          9 VHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYC   54 (71)
Q Consensus         9 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c   54 (71)
                      .|+++|.+++||.|..|++.|.....|..|++ .|++++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~C   46 (46)
T 2ytd_A            2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRR-IHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSHHHHHHHHH-HHTCCCSSCSSCC
T ss_pred             CCccccCCCcCeECCCCCCeeCChHHHHHHHH-HcCCCCCCCCCCC
Confidence            36788999999999999999999999999998 8999999999987

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.64  E-value=4.1e-17  Score=64.77  Aligned_cols=44  Identities=25%  Similarity=0.248  Sum_probs=41.2

Q ss_pred             HHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChh
Q psy12265         10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYC   54 (71)
Q Consensus        10 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c   54 (71)
                      |+++|.+++||.|..|++.|...+.|..|++ .|++++||.|..|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~C   46 (46)
T 2yso_A            3 SGSSGSREKSHQCRECGEIFFQYVSLIEHQV-LHMGQKNSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCEECTTTCCEESSHHHHHHHHH-HHSCCSCCCTTCC
T ss_pred             cccccCCCCCEEccccChhhCCHHHHHHHHH-HhCCCCCCCCCCC
Confidence            5778999999999999999999999999998 7999999999887

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.64  E-value=3.7e-17  Score=64.85  Aligned_cols=45  Identities=29%  Similarity=0.476  Sum_probs=41.8

Q ss_pred             HHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChh
Q psy12265          9 VHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYC   54 (71)
Q Consensus         9 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c   54 (71)
                      .|+++|.+++||.|..|++.|.....|..|++ .|++++||.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~C   46 (46)
T 2ytr_A            2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQR-IHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSSCCTTCCTTTCCCCSSHHHHHHHHT-TTTTCSCCCSCCC
T ss_pred             CCCcCCCCCcCcCCCCCCCccCCHHHHHHHHH-hcCCCCCCCCCCC
Confidence            36788999999999999999999999999998 8999999999987

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.64  E-value=2.5e-17  Score=65.43  Aligned_cols=45  Identities=27%  Similarity=0.432  Sum_probs=41.7

Q ss_pred             HHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChh
Q psy12265          9 VHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYC   54 (71)
Q Consensus         9 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c   54 (71)
                      .|+++|.+++||.|..|++.|...+.|..|++ .|+++++|.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~C   46 (46)
T 2eoo_A            2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHLK-RHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCCCEECSSSCCEESSHHHHHHHHH-HHHSTTSSCCSCC
T ss_pred             CCCCCCCCCCCEEccccCcccCCHHHHHHHHH-HHcCCCCCCCCCC
Confidence            36788999999999999999999999999998 7999999999887

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.64  E-value=5.6e-17  Score=64.36  Aligned_cols=44  Identities=27%  Similarity=0.366  Sum_probs=41.2

Q ss_pred             HHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChh
Q psy12265         10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYC   54 (71)
Q Consensus        10 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c   54 (71)
                      |+++|.+++||.|..|++.|.....|..|++ .|++++||.|..|
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~C   46 (46)
T 2enc_A            3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQR-SHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCSEECSSSCCEESSHHHHHHHHH-HSCCSSCCSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCCcCCChHHHHHHHH-HhCCCCCCCCCCC
Confidence            5678999999999999999999999999998 8999999999887

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.64  E-value=1.5e-16  Score=68.38  Aligned_cols=57  Identities=25%  Similarity=0.544  Sum_probs=51.8

Q ss_pred             hhCCCceeccc--ccccccchhhHHHhHhhhcCCcCceeCCh--hhHhhhchHHHHHhhhcC
Q psy12265         14 HLGLKPYGCEV--CGRHFRQWGDLKYHKASLHSDVKAFQCEY--CGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        14 ~~~~~~~~c~~--c~~~~~~~~~l~~h~~~~~~~~~~~~C~~--c~~~f~~~~~l~~h~~~~   71 (71)
                      ....++|.|..  |++.|.....|..|++ .|+++++|.|.+  |++.|.....|..|++++
T Consensus        12 ~~~~~~~~C~~~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           12 SSRIRSHICSHPGCGKTYFKSSHLKAHTR-THTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCCEECSSTTTCCEESSHHHHHHHHH-HHSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             ccccCceeCCCCCCccccCCHHHHHHHHH-hcCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            34568899998  9999999999999998 899999999965  999999999999999864

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.64  E-value=2.7e-17  Score=65.30  Aligned_cols=45  Identities=27%  Similarity=0.525  Sum_probs=41.7

Q ss_pred             HHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChh
Q psy12265          9 VHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYC   54 (71)
Q Consensus         9 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c   54 (71)
                      .|+++|.+++||.|..|++.|...+.|..|++ .|++++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~C   46 (46)
T 2emp_A            2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQV-IHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESCHHHHHHHHH-HHHCCSCCSCCCC
T ss_pred             CcccccCCCcCeECCCCCchhCCHHHHHHHHH-HcCCCCCCCCCCC
Confidence            36788999999999999999999999999998 7999999999887

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.64  E-value=4.2e-17  Score=64.69  Aligned_cols=45  Identities=22%  Similarity=0.334  Sum_probs=41.6

Q ss_pred             HHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChh
Q psy12265          9 VHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYC   54 (71)
Q Consensus         9 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c   54 (71)
                      .|+++|.+++||.|..|++.|.....|..|++ .|++++||.|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~C   46 (46)
T 2en8_A            2 SSGSSGSGEKSHTCDECGKNFCYISALRIHQR-VHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECTTTCCEESSHHHHHHHHT-TTCCSCSSCCSCC
T ss_pred             CccccCCCCCCeECCCcCcccCCHHHHHHHHH-HhCCCCCCCCCCC
Confidence            36778999999999999999999999999998 8999999999877

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.64  E-value=3.8e-17  Score=64.86  Aligned_cols=44  Identities=25%  Similarity=0.462  Sum_probs=41.3

Q ss_pred             HHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChh
Q psy12265         10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYC   54 (71)
Q Consensus        10 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c   54 (71)
                      |+++|.+++||.|..|++.|.....|..|++ .|++++||.|.+|
T Consensus         3 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~C   46 (46)
T 2ysp_A            3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQK-VHTGERPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEEETTTTEEESCHHHHHHHHT-TSCSCCSSCCSCC
T ss_pred             CCcCCCCCCCeECCCCCCccCCHHHHHHHHH-hhCCCCCCCCCCC
Confidence            6778999999999999999999999999998 8999999999987

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.64  E-value=4.3e-17  Score=64.66  Aligned_cols=45  Identities=24%  Similarity=0.411  Sum_probs=41.7

Q ss_pred             HHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChh
Q psy12265          9 VHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYC   54 (71)
Q Consensus         9 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c   54 (71)
                      .|+++|.+++||.|..|++.|.....|..|++ .|++++||.|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~C   46 (46)
T 2eov_A            2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQK-CHTGERHSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSCBCSSSCCBCSSHHHHHHHHH-HHSCCSSCCSCCC
T ss_pred             CCCCCCCCCCCccCCccChhhCCHHHHHHHHH-hcCCCCCCCCCCC
Confidence            36788999999999999999999999999998 8999999999887

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.64  E-value=2.9e-17  Score=65.22  Aligned_cols=45  Identities=27%  Similarity=0.479  Sum_probs=41.6

Q ss_pred             HHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChh
Q psy12265          9 VHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYC   54 (71)
Q Consensus         9 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c   54 (71)
                      .|+++|.+++||.|..|++.|.....|..|++ .|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~c   46 (46)
T 2emh_A            2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQK-IHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCSCCCSEECTTTCCEESSHHHHHHHHH-HHHCSSCSSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCchhCCHHHHHHHHH-hcCCCCCCCCCCC
Confidence            36788999999999999999999999999998 7999999999886

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.64  E-value=6.9e-17  Score=64.12  Aligned_cols=44  Identities=23%  Similarity=0.377  Sum_probs=41.1

Q ss_pred             HHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChh
Q psy12265         10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYC   54 (71)
Q Consensus        10 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c   54 (71)
                      |+++|.+++||.|..|++.|....+|..|++ .|++++||.|..|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~C   46 (46)
T 2el6_A            3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQR-MHTREKPSGPSSG   46 (46)
T ss_dssp             SCCSSCCCCSEECSSSSCEESSHHHHHHHHG-GGCCSSCCSCCCC
T ss_pred             CCCCCCCCCCeECCCCCcccCCHHHHHHHHH-HcCCCCCCCCCCC
Confidence            5678999999999999999999999999998 8999999999887

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.64  E-value=1.5e-16  Score=73.09  Aligned_cols=57  Identities=28%  Similarity=0.566  Sum_probs=53.1

Q ss_pred             HhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         13 VHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        13 ~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      .|.++++|.| .|++.|.....|..|++ .|.++++|.|..|++.|.....|..|++++
T Consensus         4 ~h~~~k~~~C-~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h   60 (110)
T 2csh_A            4 GSSGDKLYPC-QCGKSFTHKSQRDRHMS-MHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   60 (110)
T ss_dssp             CCCCCCCEEC-TTSCEESSHHHHHHHHH-HHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CCCCCCCEec-cCCCccCCHHHHHHHHH-HcCCCcCccCCCCCcccCCHHHHHHHHHHc
Confidence            4778999999 99999999999999998 799999999999999999999999998753

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.64  E-value=3.4e-17  Score=64.99  Aligned_cols=45  Identities=24%  Similarity=0.420  Sum_probs=41.7

Q ss_pred             HHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChh
Q psy12265          9 VHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYC   54 (71)
Q Consensus         9 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c   54 (71)
                      .|+++|.+++||.|..|++.|.....|..|++ .|++++||.|.+|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~C   46 (46)
T 2ytg_A            2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQR-VHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECTTTCCEESSSHHHHTTGG-GGSSCCSSCSCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHH-HcCCCCCCCCCCC
Confidence            36778999999999999999999999999998 8999999999987

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.63  E-value=4.7e-17  Score=64.58  Aligned_cols=44  Identities=32%  Similarity=0.487  Sum_probs=41.3

Q ss_pred             HHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChh
Q psy12265         10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYC   54 (71)
Q Consensus        10 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c   54 (71)
                      |+++|.+++||.|..|++.|....+|..|++ .|++++||.|.+|
T Consensus         3 h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~C   46 (46)
T 2en6_A            3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQR-THTGEKPSGPSSG   46 (46)
T ss_dssp             CSCCCCSSCCEEETTTTEEESSHHHHHHHHH-HHSSCCCSSSCCC
T ss_pred             CCCccCCCcCeECCCCCcccCchHHHHHHHH-HcCCCCCCCCCCC
Confidence            5778999999999999999999999999998 7999999999887

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.63  E-value=7.7e-17  Score=63.96  Aligned_cols=45  Identities=27%  Similarity=0.462  Sum_probs=41.3

Q ss_pred             HHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChh
Q psy12265          9 VHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYC   54 (71)
Q Consensus         9 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c   54 (71)
                      .|+++|.+++||.|..|++.|.....|..|++ .|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~~   46 (46)
T 2ep3_A            2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQK-IHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSCCCSEECSSSCCEESSHHHHHHHHT-TTTTSCCCCTTCC
T ss_pred             CCCCCCCCCCCeECCCCCchhCCHHHHHHHHH-HcCCCCCCCCCCC
Confidence            36788999999999999999999999999998 8999999999864

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.63  E-value=3e-17  Score=65.16  Aligned_cols=45  Identities=29%  Similarity=0.457  Sum_probs=41.6

Q ss_pred             HHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChh
Q psy12265          9 VHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYC   54 (71)
Q Consensus         9 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c   54 (71)
                      .|+++|.+++||.|..|++.|...++|..|++ .|++++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~C   46 (46)
T 2yu8_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRR-VHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECSSSCCEESSSHHHHHHTH-HHHSCCCSCSCCC
T ss_pred             CcCcCCCCCCCeECCcCCchhCCHHHHHHHHH-hcCCCCCCCCCCC
Confidence            36778999999999999999999999999998 7999999999887

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.63  E-value=1.8e-16  Score=71.24  Aligned_cols=56  Identities=30%  Similarity=0.530  Sum_probs=52.3

Q ss_pred             hhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265         14 HLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        14 ~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      ..++++|.|..|++.|.....|..|++ .|.++++|.|..|++.|.....|..|+++
T Consensus         3 ~~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   58 (96)
T 2dmd_A            3 SGSSGPHKCEVCGKCFSRKDKLKTHMR-CHTGVKPYKCKTCDYAAADSSSLNKHLRI   58 (96)
T ss_dssp             CCCCCCCCBTTTTBCCCCHHHHHHHGG-GCCCCCSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCCcCeECCCCCCccCCHHHHHHHHH-hcCCCCCEeCCCCCCccCCHHHHHHHHHH
Confidence            457889999999999999999999998 79999999999999999999999999875

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.63  E-value=1.7e-16  Score=71.22  Aligned_cols=55  Identities=35%  Similarity=0.601  Sum_probs=51.6

Q ss_pred             hCCCceecccccccccchhhHHHhHhhhcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265         15 LGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        15 ~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      .++++|.|..|++.|.....|..|++ .|.++++|.|..|++.|.....|..|+++
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   57 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDVYHLNRHKL-SHSGEKPYSCPVCGLRFKRKDRMSYHVRS   57 (95)
T ss_dssp             CCCSCEECSSSCCEESSSHHHHHHHH-HSCSSCSEECSSSCCEESCHHHHHHHHHH
T ss_pred             CCCCCeECCCCCCccCChHHHHHHHH-hcCCCCCCcCCCCCCccCCHHHHHHHHHH
Confidence            46789999999999999999999998 79999999999999999999999999874

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.62  E-value=4.5e-17  Score=64.71  Aligned_cols=44  Identities=25%  Similarity=0.423  Sum_probs=41.1

Q ss_pred             HHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChh
Q psy12265         10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYC   54 (71)
Q Consensus        10 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c   54 (71)
                      |+++|.+++||.|..|++.|.....|..|++ .|++++||.|.+|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~C   46 (46)
T 2ytm_A            3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQR-LHTGQRPSGPSSG   46 (46)
T ss_dssp             SCCCCSSCCSSSBTTTTBCCSSHHHHHHHHH-HHHSCCCCCCCCC
T ss_pred             CCcCCCCCCCcCCCCCCchhCCHHHHHHHHH-HcCCCCCCCCCCC
Confidence            5678999999999999999999999999998 7999999999887

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.62  E-value=4.1e-18  Score=78.93  Aligned_cols=66  Identities=15%  Similarity=0.170  Sum_probs=57.5

Q ss_pred             hHHHHHHHhHhhCCCceecccccccccchhhHHHhHhhh--cCCcCce-eCChhhHhh--hchHHHHHhhhc
Q psy12265          4 FTYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASL--HSDVKAF-QCEYCGKDF--ARKYQAHSYHQI   70 (71)
Q Consensus         4 ~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~--~~~~~~~-~C~~c~~~f--~~~~~l~~h~~~   70 (71)
                      ...|..|+++|.+++||.|..|++.|.....|..|++ .  +.+++++ .|..|++.|  .....|..|+++
T Consensus         4 ~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~-~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~   74 (115)
T 2dmi_A            4 GSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMN-ETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGK   74 (115)
T ss_dssp             CCCCCCCCCCCCCCCSEEBSSSSCEESSHHHHHHHHH-HTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCS
T ss_pred             chhhhhheeeeCCCCCEECCccCchhcCHHHHHHHHH-HhCccccCCCccCCCCCcccccccHHHHHHHhhc
Confidence            4567789999999999999999999999999999998 6  6666655 599999998  899999999865

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.62  E-value=8.5e-16  Score=66.77  Aligned_cols=50  Identities=32%  Similarity=0.557  Sum_probs=47.1

Q ss_pred             CcChHHHHHHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeC
Q psy12265          1 MEKFTYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQC   51 (71)
Q Consensus         1 f~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C   51 (71)
                      |.....|..|+++|.+++||.|..|++.|.....|..|++ .|++++||.|
T Consensus        28 f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~-~H~~~~p~~C   77 (77)
T 2cot_A           28 FSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHR-VHTGSGPSSG   77 (77)
T ss_dssp             CSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGG-GSCCCCCCCC
T ss_pred             cCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHH-HhCCCCCCCC
Confidence            6678899999999999999999999999999999999998 8999999987

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.62  E-value=6.9e-17  Score=64.13  Aligned_cols=44  Identities=27%  Similarity=0.511  Sum_probs=41.0

Q ss_pred             HHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChh
Q psy12265         10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYC   54 (71)
Q Consensus        10 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c   54 (71)
                      |+++|.+++||.|..|++.|.....|..|++ .|+++++|.|.+|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~C   46 (46)
T 2em8_A            3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQR-VHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSEECSSSCCEESSHHHHHHHHH-HHHCCCCCCSCCC
T ss_pred             CCCCCCCCCCeECcccCchhCCHHHHHHHHH-HHcCCCCCCCCCC
Confidence            5678899999999999999999999999998 7999999999987

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.60  E-value=1.6e-16  Score=63.17  Aligned_cols=45  Identities=29%  Similarity=0.352  Sum_probs=41.1

Q ss_pred             HHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChh
Q psy12265         10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYC   54 (71)
Q Consensus        10 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c   54 (71)
                      |+++|.+++||.|..|++.|.....|..|++..|++++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             cccccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            677899999999999999999999999998636999999999887

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.60  E-value=1.9e-16  Score=62.85  Aligned_cols=44  Identities=30%  Similarity=0.440  Sum_probs=40.7

Q ss_pred             HHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChh
Q psy12265         10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYC   54 (71)
Q Consensus        10 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c   54 (71)
                      |+++|.+++||.|..|++.|.....|..|++ .|++++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~~   46 (46)
T 2em2_A            3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLR-IHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSEECSSSCCEESSHHHHHHHHH-HHCCCCSSCSSCC
T ss_pred             CCCCCCCCCCEECCcCCchhCCHHHHHHHHH-HhCCCCCCCCCCC
Confidence            6778999999999999999999999999998 7999999999864

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.60  E-value=6.3e-16  Score=67.32  Aligned_cols=56  Identities=32%  Similarity=0.565  Sum_probs=51.0

Q ss_pred             hCCCceeccc--ccccccchhhHHHhHhhhcCCcCceeCCh--hhHhhhchHHHHHhhhc
Q psy12265         15 LGLKPYGCEV--CGRHFRQWGDLKYHKASLHSDVKAFQCEY--CGKDFARKYQAHSYHQI   70 (71)
Q Consensus        15 ~~~~~~~c~~--c~~~~~~~~~l~~h~~~~~~~~~~~~C~~--c~~~f~~~~~l~~h~~~   70 (71)
                      +++++|.|..  |++.|.....|..|++..|.++++|.|..  |++.|.....|..|+++
T Consensus         3 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~   62 (79)
T 2dlk_A            3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL   62 (79)
T ss_dssp             SCCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHH
T ss_pred             CCCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHH
Confidence            4678999987  99999999999999874599999999998  99999999999999875

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.59  E-value=4.4e-16  Score=60.60  Aligned_cols=42  Identities=24%  Similarity=0.447  Sum_probs=38.7

Q ss_pred             HHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCC
Q psy12265         10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE   52 (71)
Q Consensus        10 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~   52 (71)
                      |+++|.+++||.|..|++.|...+.|..|++ .|+++++|.|+
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~   42 (42)
T 2el5_A            1 GSSGSSGENPYECSECGKAFNRKDQLISHQR-THAGESGPSSG   42 (42)
T ss_dssp             CCSSSSSCCSEECSSSCCEESSHHHHHHHHG-GGCCCCSCCCC
T ss_pred             CCCCCCCCCCccCCCcChhhCCHHHHHHHHH-hcCCCCCCCCC
Confidence            4678899999999999999999999999998 89999999985

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.59  E-value=1.2e-15  Score=69.60  Aligned_cols=56  Identities=30%  Similarity=0.634  Sum_probs=51.8

Q ss_pred             hCCCceecccccccccchhhHHHhHhhhcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         15 LGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        15 ~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      ..+++|.|..|++.|.....|..|++ .|.++++|.|..|++.|.....|..|++++
T Consensus        13 ~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h   68 (106)
T 2ee8_A           13 KTKKEFICKFCGRHFTKSYNLLIHER-THTDERPYTCDICHKAFRRQDHLRDHRYIH   68 (106)
T ss_dssp             CCCCCCBCSSSCCBCSSHHHHHHHHH-HHCCSCCCBCSSSCCBCSCHHHHHHHGGGS
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHH-HcCCCCCcCCCCccchhCCHHHHHHHHHHh
Confidence            45678999999999999999999998 799999999999999999999999998763

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.58  E-value=4.9e-16  Score=61.61  Aligned_cols=43  Identities=26%  Similarity=0.471  Sum_probs=40.0

Q ss_pred             HHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCCh
Q psy12265         10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEY   53 (71)
Q Consensus        10 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~   53 (71)
                      |+++|.+++||.|..|++.|.....|..|++ .|++++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2em4_A            3 SGSSGTGQRPYECIECGKAFKTKSSLICHRR-SHTGEKPSGPSS   45 (46)
T ss_dssp             SCCCCCCSSSEECSSSCCEESSHHHHHHHHH-HHSSSSCCCCCC
T ss_pred             CccccCCCcCcCCCCCCCccCCHHHHHHHHH-hcCCCCCCCCCC
Confidence            6788999999999999999999999999998 899999999974

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.57  E-value=5.7e-16  Score=61.39  Aligned_cols=44  Identities=30%  Similarity=0.499  Sum_probs=40.3

Q ss_pred             HHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCCh
Q psy12265          9 VHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEY   53 (71)
Q Consensus         9 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~   53 (71)
                      .|+++|.+++||.|..|++.|.....|..|++ .|++++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2enf_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRG-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSCBCSSSCCBCSSHHHHHHHHT-TTTTSSCCCCSC
T ss_pred             CCCcCCCCCcCeECCCCCcccCCHHHHHHHHH-hhCCCCCCCCCC
Confidence            36778999999999999999999999999998 899999999974

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.57  E-value=4.9e-16  Score=61.61  Aligned_cols=44  Identities=25%  Similarity=0.450  Sum_probs=40.3

Q ss_pred             HHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCCh
Q psy12265          9 VHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEY   53 (71)
Q Consensus         9 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~   53 (71)
                      .|+++|.+++||.|..|++.|.....|..|++ .|++++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2emj_A            2 SSGSSGTGEKPFECAECGKSFSISSQLATHQR-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSEECSSSSCEESSHHHHHHHHH-HHTTSCSSSSCC
T ss_pred             CCCCCCCCCCCEECCCCCcccCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            36788999999999999999999999999998 799999999974

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.57  E-value=6.8e-16  Score=68.59  Aligned_cols=54  Identities=33%  Similarity=0.692  Sum_probs=49.0

Q ss_pred             CCCceecc--cccccccchhhHHHhHhhhcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265         16 GLKPYGCE--VCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        16 ~~~~~~c~--~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      +++||.|.  .|++.|.....|..|++ .|.++++|.|..|++.|.....|..|+++
T Consensus         1 ~~k~~~C~~~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   56 (90)
T 1a1h_A            1 MERPYACPVESCDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRT   56 (90)
T ss_dssp             --CCEECCSSSCCCEESSHHHHHHHHH-HHHCCCCEECTTTCCEESCHHHHHHHHHH
T ss_pred             CCCceECCCCCCCCccCCHHHHHHHHH-HhCCCCCccCCCCCcccCCHHHHHHHHHH
Confidence            46899998  69999999999999998 79999999999999999999999999874

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.57  E-value=6.2e-16  Score=61.30  Aligned_cols=43  Identities=23%  Similarity=0.430  Sum_probs=39.9

Q ss_pred             HHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCCh
Q psy12265         10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEY   53 (71)
Q Consensus        10 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~   53 (71)
                      |+++|.+++||.|..|++.|.....|..|++ .|++++||.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2ytp_A            3 SGSSGTGERHYECSECGKAFARKSTLIMHQR-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCCCCEECSSSCCEESSHHHHHHHHT-TTSCCCCCSSCC
T ss_pred             cccCcCCCCCeECCcCCcccCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            6778999999999999999999999999998 899999999974

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.57  E-value=7.4e-16  Score=61.02  Aligned_cols=44  Identities=30%  Similarity=0.481  Sum_probs=40.3

Q ss_pred             HHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCCh
Q psy12265          9 VHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEY   53 (71)
Q Consensus         9 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~   53 (71)
                      .|+++|.+++||.|..|++.|.....|..|++ .|++++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~p~~C~~   45 (46)
T 2yts_A            2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRR-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCSCCSEECSSSCCEESSHHHHHHHGG-GTSSCCSSCCCC
T ss_pred             CCCCCCCCCcCEECCCCChhhCChHHHHHHHH-hcCCCCCcCCCC
Confidence            36788999999999999999999999999998 899999999974

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.57  E-value=7.9e-16  Score=59.83  Aligned_cols=42  Identities=24%  Similarity=0.402  Sum_probs=38.5

Q ss_pred             HHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCC
Q psy12265         10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE   52 (71)
Q Consensus        10 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~   52 (71)
                      |+++|.+++||.|..|++.|...+.|..|++ .|+++++|.|.
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~   42 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECKETFSDNNRLVQHQK-MHTVKSGPSSG   42 (42)
T ss_dssp             CCSSSCSCCSCBCTTTCCBCSSHHHHHHHHH-HTSCCSSCCCC
T ss_pred             CCcCcCCCCCeECCCCCCccCCHHHHHHHHH-HhCCCCCCCCC
Confidence            4678899999999999999999999999998 79999999884

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.57  E-value=1.1e-15  Score=60.52  Aligned_cols=43  Identities=30%  Similarity=0.514  Sum_probs=40.0

Q ss_pred             HhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChh
Q psy12265         11 NRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYC   54 (71)
Q Consensus        11 ~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c   54 (71)
                      +++|.+++||.|..|++.|.....|..|++ .|++++||.|.+|
T Consensus         4 ~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~C   46 (46)
T 2ep0_A            4 GSSGTGEKPYKCDVCHKSFRYGSSLTVHQR-IHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSTTCCSEECSSSCCEESSHHHHHHHHT-TTSSSCCCSCCCC
T ss_pred             CCCCCCCCCeeCcccCcccCChHHHHHHHH-HhCCCCCCCCCCC
Confidence            467889999999999999999999999998 8999999999887

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.57  E-value=7.9e-16  Score=60.92  Aligned_cols=43  Identities=23%  Similarity=0.395  Sum_probs=39.9

Q ss_pred             HHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCCh
Q psy12265         10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEY   53 (71)
Q Consensus        10 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~   53 (71)
                      |+++|.+++||.|..|++.|....+|..|++ .|++++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2ytf_A            3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQR-THTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCCCSEECSSSCCEESSHHHHHHHHH-TSCSSSSSCCCC
T ss_pred             CCCCCCCCCCcCCCCCCcccCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            6778999999999999999999999999998 899999999974

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.57  E-value=3.8e-18  Score=73.39  Aligned_cols=60  Identities=23%  Similarity=0.339  Sum_probs=52.7

Q ss_pred             hHHHHHHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265          4 FTYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus         4 ~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      ...|..|+++|.+++||.|..|++.|.....|..        +++|.|..|++.|.....|..|++++
T Consensus         3 ~~~l~~H~~~h~~~~~~~C~~C~k~f~~~~~l~~--------~~~~~C~~C~~~f~~~~~l~~H~~~H   62 (73)
T 2ctu_A            3 SGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSR--------RKTPMCEKCRKDSCQEAALNKDEGNE   62 (73)
T ss_dssp             CCSCCCCCCCCCCCSEEECSSSCCEEECCCCCCC--------SSSCCCHHHHHTCSCCCSSCCCSSCC
T ss_pred             chhHHHHHHHhCCCCCeeCCcccchhCCHHHhCc--------CCCCCCCCCChhhcCHHHHHHHHHhh
Confidence            4567788999999999999999999998877654        77899999999999999999998753

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.56  E-value=9.4e-16  Score=60.74  Aligned_cols=43  Identities=26%  Similarity=0.429  Sum_probs=39.8

Q ss_pred             HHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCCh
Q psy12265         10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEY   53 (71)
Q Consensus        10 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~   53 (71)
                      |+++|.++++|.|..|++.|.....|..|++ .|+++++|.|+.
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2emi_A            3 SGSSGTGERHYECSECGKAFIQKSTLSMHQR-IHRGEKPSGPSS   45 (46)
T ss_dssp             CCCSCSSCCCEECSSSCCEESSHHHHHHHHG-GGCSCCCCSCCC
T ss_pred             CCcccCCCCCCCCCCCCcccCCHHHHHHHHh-HhCCCCCCCCCC
Confidence            6788999999999999999999999999998 899999999963

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.56  E-value=7.5e-16  Score=61.03  Aligned_cols=44  Identities=30%  Similarity=0.471  Sum_probs=40.3

Q ss_pred             HHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCCh
Q psy12265          9 VHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEY   53 (71)
Q Consensus         9 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~   53 (71)
                      .|+++|.+++||.|..|++.|.....|..|++ .|++++||.|++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2em3_A            2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQK-THTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHH-HHCCCCCCCSCC
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            36778999999999999999999999999998 799999999974

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.56  E-value=7.5e-16  Score=61.03  Aligned_cols=43  Identities=21%  Similarity=0.424  Sum_probs=39.9

Q ss_pred             HHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCCh
Q psy12265         10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEY   53 (71)
Q Consensus        10 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~   53 (71)
                      |+++|.+++||.|..|++.|.....|..|++ .|++++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2emg_A            3 SGSSGTGENPFICSECGKVFTHKTNLIIHQK-IHTGERPSGPSS   45 (46)
T ss_dssp             CCCCCCSCCSCBCTTTCCBCSSHHHHHHHHT-TTSCCCCSCSCC
T ss_pred             CCCCCCCCCCEECCccCcccCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            6778999999999999999999999999998 899999999974

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.56  E-value=8.7e-16  Score=60.81  Aligned_cols=44  Identities=25%  Similarity=0.468  Sum_probs=40.4

Q ss_pred             HHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCCh
Q psy12265          9 VHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEY   53 (71)
Q Consensus         9 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~   53 (71)
                      .|+++|.+++||.|..|++.|....+|..|++ .|++++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2ep1_A            2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQR-IHTGENPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSSCCSSSCCCCSSHHHHHHHHG-GGSSSCCCSSSC
T ss_pred             ccccCCCCCCCcCCCCCCchhCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            36788999999999999999999999999998 799999999974

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.56  E-value=8.1e-16  Score=60.93  Aligned_cols=44  Identities=30%  Similarity=0.483  Sum_probs=40.3

Q ss_pred             HHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCCh
Q psy12265          9 VHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEY   53 (71)
Q Consensus         9 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~   53 (71)
                      +|+++|.+++||.|..|++.|.....|..|++ .|++++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2eq2_A            2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQR-VHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSSSSCSSSCCSSCCCCSSHHHHHHHGG-GGCCCCCCCCCC
T ss_pred             CcccccCCCCCeECCCCCcccCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            36778999999999999999999999999998 899999999974

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.56  E-value=7.8e-16  Score=60.95  Aligned_cols=44  Identities=34%  Similarity=0.536  Sum_probs=40.3

Q ss_pred             HHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCCh
Q psy12265          9 VHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEY   53 (71)
Q Consensus         9 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~   53 (71)
                      .|+++|.+++||.|..|++.|.....|..|++ .|++++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2eow_A            2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQA-THSGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSCCCCCEECTTSCCEESSHHHHHHHHH-HHCCCSCSCTTC
T ss_pred             CccCCCCCCCCeeccccCChhcCHHHHHHHHH-HcCCCCCCCCCC
Confidence            36778999999999999999999999999998 799999999974

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.56  E-value=8e-16  Score=60.39  Aligned_cols=42  Identities=26%  Similarity=0.445  Sum_probs=39.1

Q ss_pred             HHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCC
Q psy12265         10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE   52 (71)
Q Consensus        10 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~   52 (71)
                      |+++|.+++||.|..|++.|.....|..|++ .|+++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~   44 (44)
T 2eoj_A            3 SGSSGTGENPYECCECGKVFSRKDQLVSHQK-THSGQSGPSSG   44 (44)
T ss_dssp             SCCSSSSCCSCEETTTTEECSSHHHHHHHHT-TSSSSCSCCCC
T ss_pred             CccccCCCcCeeCCCCCCccCCHHHHHHHHH-HcCCCCCCCCC
Confidence            6788999999999999999999999999998 89999999984

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.56  E-value=9.1e-16  Score=60.82  Aligned_cols=44  Identities=30%  Similarity=0.521  Sum_probs=40.2

Q ss_pred             HHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCCh
Q psy12265          9 VHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEY   53 (71)
Q Consensus         9 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~   53 (71)
                      .|+++|.+++||.|..|++.|.....|..|++ .|++++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2em6_A            2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQR-VHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCCCCCBCSSSCCBCSSHHHHHHHHT-TTSSSCCCCTTC
T ss_pred             CCccccCCCCCeECCCCCcccCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            36778999999999999999999999999988 899999999974

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.56  E-value=8.7e-16  Score=60.86  Aligned_cols=44  Identities=30%  Similarity=0.505  Sum_probs=40.2

Q ss_pred             HHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCCh
Q psy12265          9 VHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEY   53 (71)
Q Consensus         9 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~   53 (71)
                      +|+++|.+++||.|..|++.|.....|..|++ .|++++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2yth_A            2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQR-VHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCSSSBCCSSSCCCBSSHHHHHHHGG-GGTTCCCSSCCC
T ss_pred             CcccCCCCCcCCCCCCCCcccCCHHHHHHHHH-hcCCCCCCCCCC
Confidence            36778999999999999999999999999998 899999999974

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.56  E-value=1.2e-15  Score=60.15  Aligned_cols=42  Identities=31%  Similarity=0.568  Sum_probs=39.4

Q ss_pred             HhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChhh
Q psy12265         13 VHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCG   55 (71)
Q Consensus        13 ~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~   55 (71)
                      .|.+++||.|..|++.|.....|..|++ .|+++++|.|+.||
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~-~H~~~~~~~C~~cg   45 (45)
T 2epq_A            4 GSSGEKPYSCPVCGLRFKRKDRMSYHVR-SHDGSVGKSGPSSG   45 (45)
T ss_dssp             CCSSCCSSEETTTTEECSCHHHHHHHHH-HHSCCCCCCCCCCC
T ss_pred             CcCCCCCCcCCCCCcccCCHHHHHHHHH-HccCCCCCCCcCCC
Confidence            5788999999999999999999999998 89999999999986

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.56  E-value=1.2e-15  Score=59.84  Aligned_cols=43  Identities=23%  Similarity=0.430  Sum_probs=39.5

Q ss_pred             HHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCC
Q psy12265          9 VHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE   52 (71)
Q Consensus         9 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~   52 (71)
                      .|+++|.+++||.|..|++.|....+|..|++ .|++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~   44 (44)
T 2eof_A            2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQR-THTGESGPSSG   44 (44)
T ss_dssp             CCSSCCSCCCSEECTTTCCEESCHHHHHHHHH-HTTTSSCSCCC
T ss_pred             CCccCCCCCCCeECCCCCcccCCHhHHHHHHH-HhCCCCCCCCC
Confidence            36788999999999999999999999999998 79999999984

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.56  E-value=6.8e-16  Score=61.12  Aligned_cols=43  Identities=30%  Similarity=0.522  Sum_probs=39.9

Q ss_pred             HHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCCh
Q psy12265         10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEY   53 (71)
Q Consensus        10 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~   53 (71)
                      |+++|.+++||.|..|++.|.....|..|++ .|++++||.|++
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~kp~~C~~   45 (46)
T 2eor_A            3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQR-IHTGEKPSGPSS   45 (46)
T ss_dssp             SSSSSSCCCSEECTTTCCEESSHHHHHHHHH-HHHSCCCSSSTT
T ss_pred             CCcCcCCCcCccCCCCCCCcCCHHHHHHHHH-hcCCCCCCCCCC
Confidence            6788999999999999999999999999998 799999999974

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.56  E-value=9.8e-16  Score=60.71  Aligned_cols=43  Identities=30%  Similarity=0.531  Sum_probs=39.7

Q ss_pred             HHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCCh
Q psy12265         10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEY   53 (71)
Q Consensus        10 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~   53 (71)
                      |+++|.+++||.|..|++.|.....|..|++ .|+++++|.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2eoh_A            3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKR-VHTGERSSGPSS   45 (46)
T ss_dssp             CCCSCCCSCSCCCSSSCCCCSSHHHHHHHHH-HCSSCCSCSTTC
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            5778999999999999999999999999998 899999999963

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.56  E-value=7e-16  Score=61.11  Aligned_cols=43  Identities=30%  Similarity=0.528  Sum_probs=39.8

Q ss_pred             HHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCCh
Q psy12265         10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEY   53 (71)
Q Consensus        10 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~   53 (71)
                      |+++|.+++||.|..|++.|.....|..|++ .|++++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2yti_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRG-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSCCCTTCCSSSCCCCSSHHHHHHHHT-TTSCSCCSSTTC
T ss_pred             CCcCCCCCcCeECCCCCcccCChhHHHHHhH-hcCCCCCCCCCC
Confidence            6778999999999999999999999999998 899999999974

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.56  E-value=1e-15  Score=66.96  Aligned_cols=51  Identities=33%  Similarity=0.847  Sum_probs=48.1

Q ss_pred             ceecccccccccchhhHHHhHhhhcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265         19 PYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        19 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      ||.|..|++.|.....|..|++ .|.++++|.|..|++.|.....|..|+++
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   51 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLL-IHSDTRPYPCQYCGKRFHQKSDMKKHTFI   51 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHH-HHHTCCCEECSSSCCEESSHHHHHHHHHH
T ss_pred             CccCCCCcccccCchhHHHHHH-HcCCCCCeeCCcCChhhCCHHHHHHHHHH
Confidence            6899999999999999999998 79999999999999999999999999864

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.56  E-value=1.1e-15  Score=60.56  Aligned_cols=44  Identities=30%  Similarity=0.505  Sum_probs=40.2

Q ss_pred             HHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCCh
Q psy12265          9 VHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEY   53 (71)
Q Consensus         9 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~   53 (71)
                      .|+++|.+++||.|..|++.|.....|..|++ .|++++||.|+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2yrj_A            2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQR-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCCEECSSSCCEESSHHHHHHHHT-TTSSCCSSCSCC
T ss_pred             CCccCCCCCCCeECCCCCCccCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            36778999999999999999999999999998 899999999974

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.56  E-value=8.6e-16  Score=60.92  Aligned_cols=43  Identities=33%  Similarity=0.565  Sum_probs=39.7

Q ss_pred             HHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCCh
Q psy12265         10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEY   53 (71)
Q Consensus        10 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~   53 (71)
                      |+++|.+++||.|..|++.|.....|..|++ .|++++||.|++
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2eon_A            3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHS-VHSGERPSGPSS   45 (46)
T ss_dssp             CSSSCSSCCSCBCSSSCCBCSSHHHHHHHTT-TTTSCCSCTTSC
T ss_pred             CCCCCCCCcccCCCCCCcccCcHHHHHHHHH-hcCCCCCCCCCC
Confidence            5678999999999999999999999999998 899999999974

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.55  E-value=1.2e-15  Score=59.92  Aligned_cols=43  Identities=23%  Similarity=0.379  Sum_probs=39.4

Q ss_pred             HHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCC
Q psy12265          9 VHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE   52 (71)
Q Consensus         9 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~   52 (71)
                      +|+++|.+++||.|..|++.|.....|..|++ .|+++++|.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~   44 (44)
T 2yu5_A            2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHER-THARKSGPSSG   44 (44)
T ss_dssp             CCSCCCSCCCSEECSSSSCEESSSHHHHHHHH-HCCCCCSSCCC
T ss_pred             CCccccCCCCCeECCCCCchhCCHHHHHHHhH-hcCCCCCCCCC
Confidence            36778999999999999999999999999998 89999999884

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.55  E-value=2.1e-15  Score=60.30  Aligned_cols=43  Identities=30%  Similarity=0.446  Sum_probs=39.4

Q ss_pred             HhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChhhH
Q psy12265         13 VHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGK   56 (71)
Q Consensus        13 ~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~   56 (71)
                      .+.++++|.|..|++.|.....|..|++ .|++++||.|.+|++
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            6 SGRTRKQVACEICGKIFRDVYHLNRHKL-SHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCCCSEEETTTTEEESSHHHHHHHGG-GSCSCCCCCSCCCCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHH-hcCCCCCccCCCCCC
Confidence            3567899999999999999999999998 899999999999974

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.55  E-value=1e-15  Score=60.67  Aligned_cols=43  Identities=23%  Similarity=0.385  Sum_probs=39.8

Q ss_pred             HHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCCh
Q psy12265         10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEY   53 (71)
Q Consensus        10 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~   53 (71)
                      |+++|.+++||.|..|++.|.....|..|++ .|++++||.|+.
T Consensus         3 h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2en9_A            3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQR-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSCCSSCCCBCTTTCCBCSSHHHHHHHHH-HHTSSCCCSCCC
T ss_pred             CCCCCCCCCCEECCccCcccCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            5678999999999999999999999999998 899999999974

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.55  E-value=9.9e-16  Score=60.67  Aligned_cols=43  Identities=30%  Similarity=0.579  Sum_probs=39.8

Q ss_pred             HHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCCh
Q psy12265         10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEY   53 (71)
Q Consensus        10 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~   53 (71)
                      |+++|.+++||.|..|++.|.....|..|++ .|++++||.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2eq1_A            3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQV-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCCCCTTTTCCCSSHHHHHHHHT-TTCCSCCSSCCC
T ss_pred             cccccCCCCCeECCcCChhhCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            6778999999999999999999999999998 899999999974

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.55  E-value=5.2e-16  Score=61.53  Aligned_cols=43  Identities=28%  Similarity=0.358  Sum_probs=39.8

Q ss_pred             HhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChh
Q psy12265         11 NRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYC   54 (71)
Q Consensus        11 ~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c   54 (71)
                      +++|.+++||.|..|++.|....+|..|++ .|++++||.|.+|
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~C   46 (46)
T 2ytt_A            4 GSSGEGEKPYQCSECGKSFSGSYRLTQHWI-THTREKPSGPSSG   46 (46)
T ss_dssp             SSSCSCCCTTCCSSSCCCCSSHHHHHHHHT-HHHHCCCCSCCCC
T ss_pred             CCCCCCCCCeeCCCCCcccCCHHHHHHHHH-HcCCCCCCCCCCC
Confidence            467889999999999999999999999998 7999999999887

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.55  E-value=1.2e-15  Score=59.87  Aligned_cols=43  Identities=28%  Similarity=0.496  Sum_probs=39.4

Q ss_pred             HHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCC
Q psy12265          9 VHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE   52 (71)
Q Consensus         9 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~   52 (71)
                      .|+++|.+++||.|..|++.|.....|..|++ .|++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~   44 (44)
T 2en7_A            2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTR-THTGESGPSSG   44 (44)
T ss_dssp             CSCCCSSSSSSSCCTTTCCCCSSHHHHHHHHT-TTCCSSSSCCC
T ss_pred             CCCcCCCCCcCeECCCCCCccCCHHHHHHHhh-hcCCCCCCCCC
Confidence            36778999999999999999999999999998 89999999984

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.55  E-value=1e-15  Score=60.66  Aligned_cols=44  Identities=27%  Similarity=0.455  Sum_probs=40.2

Q ss_pred             HHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCCh
Q psy12265          9 VHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEY   53 (71)
Q Consensus         9 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~   53 (71)
                      .|+++|.+++||.|..|++.|.....|..|++ .|+++++|.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2eoz_A            2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLR-VHTQETLSGPSS   45 (46)
T ss_dssp             CSCCCCSSCCSEEETTTTEEESSHHHHHHHHH-HHSSCCSSSCCC
T ss_pred             CccccCCCCCCeECcccChhhCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            36788999999999999999999999999998 799999999973

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.54  E-value=1.6e-15  Score=58.90  Aligned_cols=41  Identities=29%  Similarity=0.460  Sum_probs=37.9

Q ss_pred             HHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeC
Q psy12265         10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQC   51 (71)
Q Consensus        10 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C   51 (71)
                      |+++|.+++||.|..|++.|...++|..|++ .|++++||.|
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~-~H~~~k~~~C   42 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQR-SCSQSGPSSG   42 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHH-HTTCCCCCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhh-hcCCCCCCCC
Confidence            4577889999999999999999999999998 8999999987

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.54  E-value=4.1e-15  Score=67.99  Aligned_cols=54  Identities=17%  Similarity=0.293  Sum_probs=47.6

Q ss_pred             CcChHHHHHHHh-Hh---hCCCceecccccccccchhhHHHh-HhhhcCCcCceeCChhh
Q psy12265          1 MEKFTYLKVHNR-VH---LGLKPYGCEVCGRHFRQWGDLKYH-KASLHSDVKAFQCEYCG   55 (71)
Q Consensus         1 f~~~~~l~~h~~-~~---~~~~~~~c~~c~~~~~~~~~l~~h-~~~~~~~~~~~~C~~c~   55 (71)
                      |.....|..|++ +|   .+++||.|..|++.|.....|..| ++ .|++++||.|.++.
T Consensus        28 F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r-~Htgekpy~C~~~~   86 (102)
T 2ghf_A           28 TPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLK-YHPGEENFKLTMVK   86 (102)
T ss_dssp             ESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHH-TSTTCCCEEEEECC
T ss_pred             cCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHH-hcCCCCCeeCCccc
Confidence            567789999997 58   568999999999999999999999 66 89999999998743

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.54  E-value=1.1e-14  Score=62.76  Aligned_cols=48  Identities=38%  Similarity=0.709  Sum_probs=44.7

Q ss_pred             CcChHHHHHHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCce
Q psy12265          1 MEKFTYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAF   49 (71)
Q Consensus         1 f~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~   49 (71)
                      |.....|..|+++|.++++|.|..|++.|.....|..|++ .|++++||
T Consensus        27 f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~kp~   74 (74)
T 2lce_A           27 FRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTR-IHSGEKPY   74 (74)
T ss_dssp             BSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHH-HHCCSCCC
T ss_pred             eCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHH-hcCCCCCC
Confidence            5678899999999999999999999999999999999998 79999876

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.54  E-value=1e-15  Score=59.50  Aligned_cols=41  Identities=32%  Similarity=0.557  Sum_probs=38.2

Q ss_pred             HHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeC
Q psy12265         10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQC   51 (71)
Q Consensus        10 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C   51 (71)
                      |+++|.+++||.|..|++.|...+.|..|++ .|++++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C   42 (42)
T 2ytb_A            2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIR-VHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSCCSBCCTTTTCCBSSHHHHHTTGG-GTSCCSCCCC
T ss_pred             CccccCCCCCeeCCCccchhCCHHHHHHHHH-HhCCCCCCCC
Confidence            5678999999999999999999999999998 8999999987

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.54  E-value=1.2e-15  Score=60.50  Aligned_cols=44  Identities=25%  Similarity=0.446  Sum_probs=40.1

Q ss_pred             HHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCCh
Q psy12265          9 VHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEY   53 (71)
Q Consensus         9 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~   53 (71)
                      +|+++|.+++||.|..|++.|.....|..|++ .|++++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2yto_A            2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQ-SHTGERHSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCCEECSSSCCEESSHHHHHHHHH-HHTCCCBTTTBC
T ss_pred             CcccccCCCCCEECcccCCccCCHhHHHHHHH-HcCCCCCCCCCC
Confidence            36788999999999999999999999999998 799999999863

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.54  E-value=1.5e-15  Score=60.18  Aligned_cols=43  Identities=21%  Similarity=0.271  Sum_probs=39.5

Q ss_pred             HHhHhhCCCceecccccccccchhhHHHhHhhhcCC-cCceeCCh
Q psy12265         10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSD-VKAFQCEY   53 (71)
Q Consensus        10 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~-~~~~~C~~   53 (71)
                      |+++|.+++||.|..|++.|.....|..|++ .|++ ++||.|.+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~~C~~   46 (46)
T 2eoy_A            3 SGSSGQKEKCFKCNKCEKTFSCSKYLTQHER-IHTRGVKSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCCEECSSSCCEESSSHHHHHHHT-TCCSCCTTSSSCC
T ss_pred             CccccCCCCCEECcCCCCcCCCHHHHHHHHH-HcCCCCCCCCCCC
Confidence            5778999999999999999999999999998 8999 99999963

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.54  E-value=1.3e-15  Score=62.29  Aligned_cols=48  Identities=19%  Similarity=0.159  Sum_probs=42.2

Q ss_pred             CcChHHHHHHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCce
Q psy12265          1 MEKFTYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAF   49 (71)
Q Consensus         1 f~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~   49 (71)
                      |.....|..|+++|.+++||.|..|++.|...+.|..|++ .|++++||
T Consensus         6 ~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~kp~   53 (54)
T 1yui_A            6 AKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLE-LRHFAKPG   53 (54)
T ss_dssp             CSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHH-HHTTTSCC
T ss_pred             cCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHH-HhccCCCC
Confidence            4556677889999999999999999999999999999988 79998887

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.54  E-value=1.7e-15  Score=59.50  Aligned_cols=42  Identities=19%  Similarity=0.256  Sum_probs=39.0

Q ss_pred             HHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCC
Q psy12265         10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE   52 (71)
Q Consensus        10 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~   52 (71)
                      |+++|.+++||.|..|++.|.....|..|++ .|++++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~   44 (44)
T 2emb_A            3 SGSSGHTRKRYECSKCQATFNLRKHLIQHQK-THAAKSGPSSG   44 (44)
T ss_dssp             CCSCCCCCSSEECTTTCCEESCHHHHHHHGG-GGCCCCCTTCC
T ss_pred             cccccCCCCCeECCCCCCccCCHHHHHHHHH-HcCCCCCcCCC
Confidence            6778999999999999999999999999998 89999999884

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.53  E-value=1.9e-15  Score=59.85  Aligned_cols=43  Identities=30%  Similarity=0.532  Sum_probs=39.4

Q ss_pred             HHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCCh
Q psy12265         10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEY   53 (71)
Q Consensus        10 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~   53 (71)
                      |+++|.+++||.|..|++.|.....|..|++ .|++++||.|+.
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2enh_A            3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQR-VHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSSSCBCTTTCCBCSSSHHHHHHGG-GSCCSCCCCCCC
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            4678899999999999999999999999998 899999999963

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.53  E-value=1.3e-15  Score=59.22  Aligned_cols=41  Identities=34%  Similarity=0.613  Sum_probs=37.7

Q ss_pred             HHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeC
Q psy12265         10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQC   51 (71)
Q Consensus        10 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C   51 (71)
                      |+++|.+++||.|..|++.|...+.|..|++ .|++++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C   42 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLR-IHTGSGPSSG   42 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTT-TTSCCSSTTC
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHH-hcCCCCCCCC
Confidence            4678899999999999999999999999998 8999999987

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.53  E-value=2.2e-15  Score=66.19  Aligned_cols=51  Identities=27%  Similarity=0.641  Sum_probs=47.9

Q ss_pred             ceec--ccccccccchhhHHHhHhhhcCCcCceeCCh--hhHhhhchHHHHHhhhc
Q psy12265         19 PYGC--EVCGRHFRQWGDLKYHKASLHSDVKAFQCEY--CGKDFARKYQAHSYHQI   70 (71)
Q Consensus        19 ~~~c--~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~--c~~~f~~~~~l~~h~~~   70 (71)
                      ||.|  ..|++.|.....|..|++ .|.++++|.|+.  |++.|.....|..|+++
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~   55 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQF-SHTQQLPYECPHEGCDKRFSLPSRLKRHEKV   55 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHH-HHHTTCCEECCSTTCCCEESSHHHHHHHHHH
T ss_pred             CccCCCCCCCcccCCHHHHHHHHH-HhCCCCCeeCCCCCCcCccCCHHHHHHHHHH
Confidence            6899  899999999999999998 799999999988  99999999999999875

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.53  E-value=1.1e-15  Score=59.44  Aligned_cols=41  Identities=32%  Similarity=0.539  Sum_probs=37.9

Q ss_pred             HHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeC
Q psy12265         10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQC   51 (71)
Q Consensus        10 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C   51 (71)
                      |+++|.+++||.|..|++.|.....|..|++ .|++++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C   42 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVL-IHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTH-HHHSCCSSCC
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHH-HcCCCCCCCC
Confidence            5678899999999999999999999999998 8999999987

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.52  E-value=2.2e-15  Score=59.60  Aligned_cols=44  Identities=30%  Similarity=0.517  Sum_probs=40.2

Q ss_pred             HHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCCh
Q psy12265          9 VHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEY   53 (71)
Q Consensus         9 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~   53 (71)
                      .|+++|.+++||.|..|++.|.....|..|++ .|++++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2eq3_A            2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQA-IHTGKKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCSSEETTTTEECSSHHHHHHHHT-TSCCCCCCCSCC
T ss_pred             CcccCCCCCCCeECCCCChhhCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            36788999999999999999999999999998 899999999963

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.51  E-value=1.7e-15  Score=69.39  Aligned_cols=57  Identities=18%  Similarity=0.297  Sum_probs=51.6

Q ss_pred             HHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChhhHhhhchHHHHHhhh
Q psy12265         10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQ   69 (71)
Q Consensus        10 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~   69 (71)
                      ++++|.++++|.|..|++.|.....|..|++ .|  +++|.|.+|++.|.....|..|+.
T Consensus         7 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~H--~~~~~C~~C~~~f~~~~~l~~H~~   63 (107)
T 1wjp_A            7 GASPVENKEVYQCRLCNAKLSSLLEQGSHER-LC--RNAAVCPYCSLRFFSPELKQEHES   63 (107)
T ss_dssp             CCCCCCCCCCCBCTTTCCBCSSHHHHHHHHH-HH--HHSBCCTTTCCCBSSHHHHHHHHH
T ss_pred             cCcccCCCcCeECCCCCCccCCHHHHHHHHH-HC--CCCccCCCCCCccCCHHHHHHHHH
Confidence            3567889999999999999999999999998 67  579999999999999999999973

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.51  E-value=1.3e-15  Score=60.28  Aligned_cols=43  Identities=23%  Similarity=0.323  Sum_probs=39.7

Q ss_pred             HHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCC
Q psy12265          9 VHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE   52 (71)
Q Consensus         9 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~   52 (71)
                      +|+++|.+++||.|..|++.|.....|..|++ .|++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~~~~~C~   44 (46)
T 2en3_A            2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLR-SHERTDPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSSHHHHHHHH-HHHHSCCSSCS
T ss_pred             ccccccCCCCCeeCcccChhhCCHHHHHHHHH-HhCCCCCCCCC
Confidence            36788999999999999999999999999998 79999999986

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.51  E-value=2.3e-14  Score=63.62  Aligned_cols=47  Identities=17%  Similarity=0.231  Sum_probs=42.9

Q ss_pred             CcChHHHHHHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcC
Q psy12265          1 MEKFTYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVK   47 (71)
Q Consensus         1 f~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~   47 (71)
                      |.....|..|+++|.+++||.|..|++.|.....|.+|++..|+++.
T Consensus        38 F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E~   84 (85)
T 2lv2_A           38 FASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSEN   84 (85)
T ss_dssp             ESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTCTTCC
T ss_pred             cCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccCcCCC
Confidence            67789999999999999999999999999999999999865788764

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.51  E-value=1.4e-15  Score=60.22  Aligned_cols=43  Identities=28%  Similarity=0.457  Sum_probs=39.7

Q ss_pred             HHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCCh
Q psy12265         10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEY   53 (71)
Q Consensus        10 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~   53 (71)
                      |+++|.+++||.|..|++.|.....|..|++ .|+++++|.|+.
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2emz_A            3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLR-LHSREKSSGPSS   45 (46)
T ss_dssp             CCSCSSCCCSCCCSSSCCCCSSHHHHHHHHH-HHHHTTCCCSCC
T ss_pred             CCcCCCCCCCeECCCCCcccCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            6778999999999999999999999999998 799999999963

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.51  E-value=3.7e-15  Score=58.50  Aligned_cols=42  Identities=24%  Similarity=0.342  Sum_probs=38.6

Q ss_pred             HHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCC
Q psy12265         10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE   52 (71)
Q Consensus        10 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~   52 (71)
                      |+++|.+++||.|..|++.|.....|..|++ .|++++||.|.
T Consensus         3 h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~   44 (44)
T 2eou_A            3 SGSSGAAKTTSECQECGKIFRHSSLLIEHQA-LHAGESGPSSG   44 (44)
T ss_dssp             CSCSCSSSCCCCCTTTCCCCSSHHHHHHHHH-HHTTSCCCCCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHH-HHCCCCCCCCC
Confidence            4677889999999999999999999999998 79999999984

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.50  E-value=7.6e-15  Score=57.61  Aligned_cols=41  Identities=29%  Similarity=0.458  Sum_probs=38.1

Q ss_pred             HHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeC
Q psy12265         10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQC   51 (71)
Q Consensus        10 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C   51 (71)
                      |+++|.+++||.|..|++.|...+.|..|++ .|++++||.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~~   43 (44)
T 2epv_A            3 SGSSGSGEKPYECNECGKAFIWKSLLIVHER-THAGVSGPSS   43 (44)
T ss_dssp             CCCCCCCCCSEECSSSCCEESSHHHHHHHHG-GGSSCSCCCC
T ss_pred             CCcccCCCcCeECCCCCcccCchHHHHHHHh-HhcCCCCCCC
Confidence            6778999999999999999999999999998 8999999976

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.50  E-value=5.9e-15  Score=58.80  Aligned_cols=43  Identities=30%  Similarity=0.486  Sum_probs=39.6

Q ss_pred             HhHhhCCCceecc--cccccccchhhHHHhHhhhcCCcCceeCChh
Q psy12265         11 NRVHLGLKPYGCE--VCGRHFRQWGDLKYHKASLHSDVKAFQCEYC   54 (71)
Q Consensus        11 ~~~~~~~~~~~c~--~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c   54 (71)
                      .++|.+++||.|.  .|++.|.....|..|++ .|++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~C   48 (48)
T 2ent_A            4 GSSGTGEKPFACTWPGCGWRFSRSDELSRHRR-SHSGVKPSGPSSG   48 (48)
T ss_dssp             CCSSCCCCCEECCSSSCCCEESSHHHHHHHHT-TSCCCCSCSSCCC
T ss_pred             CCCcCCCCCeECCCCCCCCccCCHHHHHHHHH-HhCCCCCCCCCCC
Confidence            4678899999998  89999999999999998 8999999999877

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.49  E-value=2.4e-15  Score=59.01  Aligned_cols=43  Identities=21%  Similarity=0.399  Sum_probs=39.2

Q ss_pred             HHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCC
Q psy12265          9 VHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE   52 (71)
Q Consensus         9 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~   52 (71)
                      .|+++|.+++||.|..|++.|.....|..|++ .|++++||.|.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~-~H~~~~~~~C~   44 (44)
T 2eox_A            2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQK-IHTRKSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCCCEEETTTTEEESSSHHHHTTHH-HHCCCCCCSCC
T ss_pred             CCCcCCCCCCCeECcccCcccCCHHHHHHHHH-HhCCCCCCCCC
Confidence            36778999999999999999999999999998 79999999883

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=3.3e-14  Score=63.68  Aligned_cols=53  Identities=23%  Similarity=0.306  Sum_probs=42.2

Q ss_pred             CceecccccccccchhhHHHhHhhhcCCcCc--------eeCChhhHhhhchHHHHHhhhc
Q psy12265         18 KPYGCEVCGRHFRQWGDLKYHKASLHSDVKA--------FQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        18 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~--------~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      ..+.|..|++.|.....|..|++..|.++++        |.|..|++.|.....|..|+++
T Consensus        24 ~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~   84 (95)
T 2ej4_A           24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRV   84 (95)
T ss_dssp             SSSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHH
T ss_pred             CCCcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHh
Confidence            3477888888888888888888722777766        7888888888888888888765

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.49  E-value=3.5e-14  Score=62.51  Aligned_cols=57  Identities=16%  Similarity=0.298  Sum_probs=50.1

Q ss_pred             CcChHHHHHHHhHhhCC----CceecccccccccchhhHHHhHhhhcCCcCceeCChhhHhh
Q psy12265          1 MEKFTYLKVHNRVHLGL----KPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDF   58 (71)
Q Consensus         1 f~~~~~l~~h~~~~~~~----~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f   58 (71)
                      |.....|..|++.+..+    ++|.|..|++.|.....|..|++ .|.++.++.|..|+..|
T Consensus        25 f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~-~h~~~~~~~~~~~~~~~   85 (86)
T 1x6h_A           25 FRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHAD-NCAGPDGVEGENSGPSS   85 (86)
T ss_dssp             ESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHH-HCCCCCSCCCCCCCCCC
T ss_pred             cCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHH-HccCCCCcccCCCCCCC
Confidence            56678899999877655    78999999999999999999998 89999999999998654

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.48  E-value=7.8e-15  Score=57.81  Aligned_cols=42  Identities=31%  Similarity=0.591  Sum_probs=38.2

Q ss_pred             HhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCCh
Q psy12265         11 NRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEY   53 (71)
Q Consensus        11 ~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~   53 (71)
                      .++|.+++||.|..|++.|.....|..|++ .|+++++|.|++
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (45)
T 2epu_A            4 GSSGTGQKPFECTHCGKSFRAKGNLVTHQR-IHTGEKSGPSSG   45 (45)
T ss_dssp             CCCCCSCCSEEETTTTEEESSHHHHHHHHT-TTSSCCCCCSCC
T ss_pred             CCCCCCCcCccCCCCCCccCChHHHHHHHH-HhCCCCCCCCCC
Confidence            456889999999999999999999999998 899999999963

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=2.7e-14  Score=55.15  Aligned_cols=39  Identities=31%  Similarity=0.613  Sum_probs=36.1

Q ss_pred             hHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeC
Q psy12265         12 RVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQC   51 (71)
Q Consensus        12 ~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C   51 (71)
                      ++|.+++||.|..|++.|.....|..|++ .|++++||.|
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C   41 (41)
T 2ept_A            3 SGSSGQRVYECQECGKSFRQKGSLTLHER-IHTGSGPSSG   41 (41)
T ss_dssp             SSCCCCCCEECSSSCCEESSHHHHHHHGG-GCCCCSCSCC
T ss_pred             CccCCCCCeECCCCCCCcCCHHHHHHHHH-HhCCCCCcCC
Confidence            46788999999999999999999999998 8999999987

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=2.1e-14  Score=56.12  Aligned_cols=41  Identities=20%  Similarity=0.194  Sum_probs=37.5

Q ss_pred             hHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCCh
Q psy12265         12 RVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEY   53 (71)
Q Consensus        12 ~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~   53 (71)
                      ++|.+++||.|..|++.|.....|..|++ .|++++||.|.+
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   43 (43)
T 2yrm_A            3 SGSSGNGAFFCNECDCRFSEEASLKRHTL-QTHSDKSGPSSG   43 (43)
T ss_dssp             SCCSSSCCBCCSSSCCCBSSHHHHHHHHH-HHTCTTCSSSCC
T ss_pred             cCcCCCCCEECCCCCCeeCChHHHHHHHH-hhCCCCCccCCC
Confidence            46788999999999999999999999998 799999999963

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=1.4e-14  Score=57.31  Aligned_cols=42  Identities=21%  Similarity=0.345  Sum_probs=38.4

Q ss_pred             HhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCCh
Q psy12265         11 NRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEY   53 (71)
Q Consensus        11 ~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~   53 (71)
                      +++|.+++||.|..|++.|.....|..|++ .|++++||.|.+
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2eom_A            4 GSSGHGERGHRCSDCGKFFLQASNFIQHRR-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSSCCCSSSCCCCSSHHHHHHHHH-HHSSCCCSSCCC
T ss_pred             CCCCCCCCCcCCCCCCCeeCChHHHHHHHH-HhCCCCCCCCCC
Confidence            467889999999999999999999999998 799999999963

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=2.3e-14  Score=64.19  Aligned_cols=51  Identities=22%  Similarity=0.275  Sum_probs=47.0

Q ss_pred             CcChHHHHHHHhH-hhCCCc--------eecccccccccchhhHHHhHhhhcCCcCceeCC
Q psy12265          1 MEKFTYLKVHNRV-HLGLKP--------YGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE   52 (71)
Q Consensus         1 f~~~~~l~~h~~~-~~~~~~--------~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~   52 (71)
                      |.....|..|+++ |.++++        |.|..|++.|.....|..|++ .|++++||.|.
T Consensus        35 f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~   94 (95)
T 2ej4_A           35 FSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIR-VHTGEKSGPSS   94 (95)
T ss_dssp             CSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHH-HHHTCCCCSSC
T ss_pred             cCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHH-hcCCCCCCCCC
Confidence            6678899999998 988887        999999999999999999998 89999999986

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.43  E-value=4.1e-13  Score=55.01  Aligned_cols=46  Identities=33%  Similarity=0.569  Sum_probs=42.0

Q ss_pred             CcChHHHHHHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcC
Q psy12265          1 MEKFTYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVK   47 (71)
Q Consensus         1 f~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~   47 (71)
                      |.....|..|+++|.+++||.|..|++.|.....|..|++ .|.+++
T Consensus        11 f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~k   56 (57)
T 1bbo_A           11 XKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK-SKAHSK   56 (57)
T ss_dssp             CSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHH-SSSSCC
T ss_pred             CCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHH-HhcccC
Confidence            6678899999999999999999999999999999999998 787664

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.41  E-value=1.4e-13  Score=60.89  Aligned_cols=53  Identities=26%  Similarity=0.547  Sum_probs=48.8

Q ss_pred             CCceeccc--ccccccchhhHHHhHhhhcCCcCceeCC--hhhHhhhchHHHHHhhhc
Q psy12265         17 LKPYGCEV--CGRHFRQWGDLKYHKASLHSDVKAFQCE--YCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        17 ~~~~~c~~--c~~~~~~~~~l~~h~~~~~~~~~~~~C~--~c~~~f~~~~~l~~h~~~   70 (71)
                      ..+|.|..  |++.|.....|..|++ .|.++++|.|+  .|++.|.....|..|+++
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~   59 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYRK   59 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHT-TSCSSCCEECCSTTTCCEESSHHHHHHHHHH
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHH-hcCCCCCcCCCCCCCCCccCCHHHHHHHHHH
Confidence            46799999  9999999999999998 79999999997  699999999999999864

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.41  E-value=4.7e-13  Score=60.47  Aligned_cols=48  Identities=25%  Similarity=0.455  Sum_probs=42.3

Q ss_pred             cChHHHHHHHhHhhCCCceecccccccccchhhHHHh-HhhhcCCcCceeC
Q psy12265          2 EKFTYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYH-KASLHSDVKAFQC   51 (71)
Q Consensus         2 ~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h-~~~~~~~~~~~~C   51 (71)
                      .....|..|+++| +++||.|..|++.|.....|..| ++ .|+++..|.+
T Consensus        46 ~~~~~L~~H~~~h-~~k~~~C~~Cgk~F~~~~~L~~H~~~-~H~~~p~~~~   94 (96)
T 2ctd_A           46 KTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMA-NHNSLPSGPS   94 (96)
T ss_dssp             SSHHHHHHHHHHH-CCCCCCCSSSCCCCSSHHHHHHHHHH-HTCCCSSCSC
T ss_pred             cCHHHHHHHHHHH-CCCCeECCCCCCeeCCHHHHHHHhHH-hcCCCCCCCC
Confidence            5778999999999 99999999999999999999999 76 7987655543

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.39  E-value=4.1e-13  Score=57.21  Aligned_cols=48  Identities=21%  Similarity=0.344  Sum_probs=43.4

Q ss_pred             CcChHHHHHHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCce
Q psy12265          1 MEKFTYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAF   49 (71)
Q Consensus         1 f~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~   49 (71)
                      |.....|..|+++|.++++|.|..|++.|.....|..|++ .|.+++|.
T Consensus        19 f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~-~h~~~~p~   66 (70)
T 1x5w_A           19 CSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMK-KFHGDMSG   66 (70)
T ss_dssp             ESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHH-HHHSSSCC
T ss_pred             cCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHH-HHhCCCCC
Confidence            5677899999999999999999999999999999999998 68777764

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.37  E-value=6e-13  Score=56.73  Aligned_cols=40  Identities=20%  Similarity=0.252  Sum_probs=35.1

Q ss_pred             hhCCCceeccc--ccccccchhhHHHhHhhhcCCcCceeCCh
Q psy12265         14 HLGLKPYGCEV--CGRHFRQWGDLKYHKASLHSDVKAFQCEY   53 (71)
Q Consensus        14 ~~~~~~~~c~~--c~~~~~~~~~l~~h~~~~~~~~~~~~C~~   53 (71)
                      .++++||.|..  |+++|...++|..|++..|++++|+.|..
T Consensus        22 ~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~~   63 (73)
T 1x3c_A           22 YSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAE   63 (73)
T ss_dssp             SCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCCS
T ss_pred             ccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccccc
Confidence            46889999975  99999999999999844799999998864

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.37  E-value=5.3e-15  Score=64.28  Aligned_cols=62  Identities=16%  Similarity=0.255  Sum_probs=54.0

Q ss_pred             HHHHHHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265          5 TYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus         5 ~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      ..|..|++++.+++|+.|..|+..|. ...|..|+  .+.+++|+.|+.|++.|. ..+|..|+++
T Consensus         3 ~~L~~H~~~~c~~r~~~C~~C~~~~~-~~~L~~H~--~~c~~~~~~C~~C~~~~~-~~~l~~H~~~   64 (75)
T 2d9k_A            3 SGSSGHEETECPLRLAVCQHCDLELS-ILKLKEHE--DYCGARTELCGNCGRNVL-VKDLKTHPEV   64 (75)
T ss_dssp             CCCSCCCCCCCCCCCEECSSSCCEEC-HHHHHHHH--HHHHHCEEECSSSCCEEE-TTGGGTHHHH
T ss_pred             hHHHhhCcccCCCcccCCcccChHhh-HHHHHHHH--hHcCCCceEcccCCCcCc-HHHHHHHHHH
Confidence            35677888899999999999999995 89999997  488999999999999877 5899999864

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.36  E-value=1.3e-12  Score=54.09  Aligned_cols=46  Identities=35%  Similarity=0.564  Sum_probs=41.1

Q ss_pred             CcChHHHHHHHhHhhCCCceecccccccccchhhHHHhHhhhcCCc
Q psy12265          1 MEKFTYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDV   46 (71)
Q Consensus         1 f~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~   46 (71)
                      |.....|..|+++|.+++||.|..|++.|.....|..|++..|+++
T Consensus        12 f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~   57 (60)
T 2adr_A           12 FARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN   57 (60)
T ss_dssp             BSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTSCCS
T ss_pred             cCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHcCCc
Confidence            5678899999999999999999999999999999999974478765

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.34  E-value=1.4e-12  Score=55.86  Aligned_cols=46  Identities=37%  Similarity=0.664  Sum_probs=41.5

Q ss_pred             CcChHHHHHHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcC
Q psy12265          1 MEKFTYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVK   47 (71)
Q Consensus         1 f~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~   47 (71)
                      |.....|..|+++|.+++||.|..|++.|.....|..|++ .|+++.
T Consensus        24 f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~-~H~~~~   69 (72)
T 1x6e_A           24 FSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQR-IHTSGP   69 (72)
T ss_dssp             ESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHH-HHHSSS
T ss_pred             cCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHH-hcCCCC
Confidence            5677899999999999999999999999999999999998 677653

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.34  E-value=2.7e-12  Score=52.53  Aligned_cols=42  Identities=40%  Similarity=0.696  Sum_probs=38.8

Q ss_pred             CcChHHHHHHHhHhhCCCceecccccccccchhhHHHhHhhhc
Q psy12265          1 MEKFTYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLH   43 (71)
Q Consensus         1 f~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~   43 (71)
                      |.....|..|+++|.+++||.|..|++.|.....|..|++ .|
T Consensus        14 f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~h   55 (57)
T 3uk3_C           14 FRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLE-RH   55 (57)
T ss_dssp             CSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHH-HH
T ss_pred             hCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHH-Hh
Confidence            6778899999999999999999999999999999999987 44

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.34  E-value=6.5e-13  Score=59.84  Aligned_cols=54  Identities=22%  Similarity=0.391  Sum_probs=49.1

Q ss_pred             CCCceeccc--ccccccchhhHHHhHhhhcCCcCceeCC--hhhHhhhchHHHHHhhhc
Q psy12265         16 GLKPYGCEV--CGRHFRQWGDLKYHKASLHSDVKAFQCE--YCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        16 ~~~~~~c~~--c~~~~~~~~~l~~h~~~~~~~~~~~~C~--~c~~~f~~~~~l~~h~~~   70 (71)
                      .+++|.|..  |++.|.....|..|++ .|.++++|.|.  .|++.|.....|..|+++
T Consensus        12 ~~~~~~C~~~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~   69 (100)
T 2ebt_A           12 KRRIHYCDYPGCTKVYTKSSHLKAHLR-THTGEKPYKCTWEGCDWRFARSDELTRHYRK   69 (100)
T ss_dssp             SCCCEECCSSSCCCEESCHHHHHHHHH-HHSCCCCEECCSSSCCCEESSHHHHHHHHHH
T ss_pred             cCcceEcCCCCCCCcccCHHHHHHHHH-HhCCCCCeeCCCCCCCCccCCHHHHHHHHHH
Confidence            457899996  9999999999999998 79999999996  699999999999999864

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=99.32  E-value=1.4e-12  Score=49.72  Aligned_cols=37  Identities=27%  Similarity=0.401  Sum_probs=33.0

Q ss_pred             hhCCCceecccccccccchhhHHHhHhhhcCCcCceeC
Q psy12265         14 HLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQC   51 (71)
Q Consensus        14 ~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C   51 (71)
                      |.+++||.|..|++.|...+.|..|++ .|++++||.+
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~~   37 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMN-VHRRDRARLR   37 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHH-TTCCSCTTTT
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHH-HcCCCcccee
Confidence            467899999999999999999999998 8999998865

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.30  E-value=1.1e-13  Score=56.44  Aligned_cols=44  Identities=5%  Similarity=0.080  Sum_probs=39.4

Q ss_pred             cccccchhhHHHhHhhhcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265         26 GRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        26 ~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      ++.|.....|..|++ .|+++++|.|..|++.|...+.|..|+++
T Consensus         3 ~k~~~~~~~l~~h~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~   46 (54)
T 1yui_A            3 AKRAKHPPGTEKPRS-RSQSEQPATCPICYAVIRQSRNLRRHLEL   46 (54)
T ss_dssp             CCCCSCSSCCCCCHH-HHTSSCCEECTTTCCEESSHHHHHHHHHH
T ss_pred             ccccCCCcchhhHHH-hcCCCCCccCCCCCcccCCHHHHHHHHHH
Confidence            356778888889988 79999999999999999999999999875

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=6.3e-12  Score=54.46  Aligned_cols=51  Identities=22%  Similarity=0.389  Sum_probs=44.5

Q ss_pred             CcChHHHHHHHhHhhC---CCceecccccccccchhhHHHhHhhhcCCcCceeC
Q psy12265          1 MEKFTYLKVHNRVHLG---LKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQC   51 (71)
Q Consensus         1 f~~~~~l~~h~~~~~~---~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C   51 (71)
                      |.....|..|+++|.+   +++|.|..|++.|.....|..|++..|.++.+...
T Consensus        17 f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~   70 (78)
T 2d9h_A           17 CRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQ   70 (78)
T ss_dssp             ESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTTTSSCCS
T ss_pred             eCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCCCCCCcc
Confidence            5677899999999986   89999999999999999999999657888776544

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.27  E-value=1.2e-12  Score=59.15  Aligned_cols=50  Identities=22%  Similarity=0.384  Sum_probs=44.3

Q ss_pred             Cc-ChHHHHHHHhHhhC-CCceecccccccccchhhHHHhHhhhcCCcCceeC
Q psy12265          1 ME-KFTYLKVHNRVHLG-LKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQC   51 (71)
Q Consensus         1 f~-~~~~l~~h~~~~~~-~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C   51 (71)
                      |. ....|..|+++|.+ +++|.|..|++.|.....|..|++ .|.+++|...
T Consensus        34 f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~-~h~~~kp~~~   85 (98)
T 2gqj_A           34 TRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTM-AEHSAKPSDA   85 (98)
T ss_dssp             CSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHH-HHSCSCSSCC
T ss_pred             hhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHH-HHcCCCCCCC
Confidence            55 77899999999998 999999999999999999999998 6888877543

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.27  E-value=8.1e-12  Score=53.43  Aligned_cols=43  Identities=33%  Similarity=0.642  Sum_probs=39.0

Q ss_pred             CcChHHHHHHHhHhhCCCceecccccccccchhhHHHhHhhhcC
Q psy12265          1 MEKFTYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHS   44 (71)
Q Consensus         1 f~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~   44 (71)
                      |.....|..|+++|.++++|.|..|++.|.....|..|++ .|+
T Consensus        31 f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~Ht   73 (73)
T 1f2i_G           31 FSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THT   73 (73)
T ss_dssp             ESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHT-TCC
T ss_pred             cCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHH-hcC
Confidence            5677899999999999999999999999999999999987 563

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.26  E-value=1.6e-12  Score=48.94  Aligned_cols=36  Identities=19%  Similarity=0.303  Sum_probs=30.3

Q ss_pred             hHhhCCCceecccccccccchhhHHHhHhhhcCCcCc
Q psy12265         12 RVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKA   48 (71)
Q Consensus        12 ~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~   48 (71)
                      ++|.+++||.|..|++.|....+|..|++ .|++++|
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~-~h~~~kp   37 (37)
T 2elo_A            2 SSGSSGRSYSCPVCEKSFSEDRLIKSHIK-TNHPEVS   37 (37)
T ss_dssp             CCCCCCCCCEETTTTEECSSHHHHHHHHH-HHCSSCC
T ss_pred             CCCCCCCCcCCCCCCCccCCHHHHHHHHH-HHcCCCC
Confidence            46778899999999999999999999987 6887754

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=99.24  E-value=2.9e-12  Score=48.15  Aligned_cols=35  Identities=31%  Similarity=0.615  Sum_probs=24.5

Q ss_pred             HHhHhhCCCceecccccccccchhhHHHhHhhhcCC
Q psy12265         10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSD   45 (71)
Q Consensus        10 h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~   45 (71)
                      |+++|.+++||.|..|++.|.....|..|++ .|++
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~-~H~~   36 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRK-RHML   36 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHG-GGTC
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHH-Hhcc
Confidence            4556777777777777777777777777766 5654

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=99.21  E-value=1.1e-11  Score=45.94  Aligned_cols=34  Identities=24%  Similarity=0.532  Sum_probs=28.8

Q ss_pred             hhCCCceecccccccccchhhHHHhHhhhcCCcCc
Q psy12265         14 HLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKA   48 (71)
Q Consensus        14 ~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~   48 (71)
                      |.+++||.|..|++.|...+.|..|++ .|++++|
T Consensus         2 H~~~k~~~C~~C~k~f~~~~~l~~H~~-~H~~~~~   35 (35)
T 1srk_A            2 SSGKRPFVCRICLSAFTTKANCARHLK-VHTDTLS   35 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHG-GGTSCCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHH-HcCCCCC
Confidence            667889999999999999999999987 7877654

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.21  E-value=1.1e-11  Score=45.89  Aligned_cols=34  Identities=21%  Similarity=0.283  Sum_probs=28.8

Q ss_pred             hhCCCceecccccccccchhhHHHhHhhhcCCcCc
Q psy12265         14 HLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKA   48 (71)
Q Consensus        14 ~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~   48 (71)
                      |.+++||.|..|++.|...+.|..|++ .|++++|
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~-~h~~~kp   35 (35)
T 2elx_A            2 SSGSSGYVCALCLKKFVSSIRLRSHIR-EVHGAAQ   35 (35)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHH-HTSCTTC
T ss_pred             CCCCCCeECCCCcchhCCHHHHHHHHH-HHcCCCC
Confidence            567889999999999999999999987 7877654

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.18  E-value=7.6e-13  Score=59.01  Aligned_cols=44  Identities=18%  Similarity=0.323  Sum_probs=39.8

Q ss_pred             HhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChhh
Q psy12265         11 NRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCG   55 (71)
Q Consensus        11 ~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~   55 (71)
                      .++|.+++||.|..|++.|.....|..|++ .|++++||.|..|.
T Consensus        17 ~~~H~~~kpy~C~~C~k~F~~~~~L~~H~~-~Ht~ekp~~C~~~~   60 (88)
T 1x6f_A           17 NGPRLQNSTYQCKHCDSKLQSTAELTSHLN-IHNEEFQKRAKRQE   60 (88)
T ss_dssp             CCSCCCCSCEECSSSCCEESSHHHHHHHHH-HHHHHHHHHCCCCS
T ss_pred             ccccCCCCCCcCCCCCCEeCCHHHHHHHHH-HhCCCCCcccchhh
Confidence            456889999999999999999999999998 79999999998764

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=99.18  E-value=1.7e-11  Score=45.06  Aligned_cols=32  Identities=22%  Similarity=0.420  Sum_probs=29.5

Q ss_pred             CceecccccccccchhhHHHhHhhhcCCcCcee
Q psy12265         18 KPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQ   50 (71)
Q Consensus        18 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~   50 (71)
                      +||.|..|++.|...+.|..|++ .|+++++|.
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~-~H~~~~~~~   32 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHIT-LHELLGEER   32 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHH-HHTTTCCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHH-HhCCCCCCC
Confidence            58999999999999999999998 899999885

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.17  E-value=6.4e-11  Score=51.13  Aligned_cols=49  Identities=20%  Similarity=0.233  Sum_probs=41.1

Q ss_pred             CcChHHHHHHHh-HhhCC-CceecccccccccchhhHHHhHhhhcCCcCce
Q psy12265          1 MEKFTYLKVHNR-VHLGL-KPYGCEVCGRHFRQWGDLKYHKASLHSDVKAF   49 (71)
Q Consensus         1 f~~~~~l~~h~~-~~~~~-~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~   49 (71)
                      |.....|..|++ .|.++ ++|.|..|++.|.....|..|++..|..+.|.
T Consensus        25 f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~p~   75 (77)
T 2ct1_A           25 FTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGPS   75 (77)
T ss_dssp             ESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSCCSCCC
T ss_pred             hCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCCCCCCC
Confidence            567789999987 67764 89999999999999999999998666666553

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=99.16  E-value=4.8e-12  Score=47.54  Aligned_cols=33  Identities=21%  Similarity=0.414  Sum_probs=29.3

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      |++ .|++++||.|+.|++.|.....|..|++++
T Consensus         2 H~~-~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H   34 (37)
T 1p7a_A            2 STR-GSTGIKPFQCPDCDRSFSRSDHLALHRKRH   34 (37)
T ss_dssp             CSS-TTCCSSSBCCTTTCCCBSSHHHHHHHHGGG
T ss_pred             CCC-cCCCCCCccCCCCCcccCcHHHHHHHHHHh
Confidence            455 689999999999999999999999998763

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.15  E-value=4e-11  Score=50.48  Aligned_cols=45  Identities=20%  Similarity=0.243  Sum_probs=39.0

Q ss_pred             CcChHHHHHHHhHhhCCCceecc-cccccccchhhHHHhHhhhcCCcCc
Q psy12265          1 MEKFTYLKVHNRVHLGLKPYGCE-VCGRHFRQWGDLKYHKASLHSDVKA   48 (71)
Q Consensus         1 f~~~~~l~~h~~~~~~~~~~~c~-~c~~~~~~~~~l~~h~~~~~~~~~~   48 (71)
                      |. ...|..|+++ .+++||.|. .|++.|...+.|..|++ .|....+
T Consensus        20 f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~-~hc~~~~   65 (66)
T 2eod_A           20 FV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLK-DSCNTAL   65 (66)
T ss_dssp             EE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHH-TTSSSCC
T ss_pred             cC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHH-hhcccCc
Confidence            44 6789999999 999999999 99999999999999997 6766544

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.15  E-value=6.3e-11  Score=49.70  Aligned_cols=41  Identities=20%  Similarity=0.369  Sum_probs=36.9

Q ss_pred             CcChHHHHHHHhH-h-hCCCceecccccccccchhhHHHhHhh
Q psy12265          1 MEKFTYLKVHNRV-H-LGLKPYGCEVCGRHFRQWGDLKYHKAS   41 (71)
Q Consensus         1 f~~~~~l~~h~~~-~-~~~~~~~c~~c~~~~~~~~~l~~h~~~   41 (71)
                      |.....|..|++. | .+++||.|..|++.|...+.|..|++.
T Consensus        20 f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~   62 (66)
T 2drp_A           20 YTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI   62 (66)
T ss_dssp             ESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHH
T ss_pred             hCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHH
Confidence            5677899999998 7 589999999999999999999999873

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.14  E-value=1.7e-11  Score=46.15  Aligned_cols=34  Identities=24%  Similarity=0.205  Sum_probs=25.5

Q ss_pred             hHhhCCCceecccccccccchhhHHHh-HhhhcCCc
Q psy12265         12 RVHLGLKPYGCEVCGRHFRQWGDLKYH-KASLHSDV   46 (71)
Q Consensus        12 ~~~~~~~~~~c~~c~~~~~~~~~l~~h-~~~~~~~~   46 (71)
                      ++|.+++||.|..|++.|...+.|..| ++ .|+++
T Consensus         2 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-~H~~~   36 (37)
T 2elm_A            2 SSGSSGHLYYCSQCHYSSITKNCLKRHVIQ-KHSNI   36 (37)
T ss_dssp             CSSSSSCEEECSSSSCEEECHHHHHHHHHH-HTCCC
T ss_pred             CccCCCcCeECCCCCcccCCHHHHHHHHHH-HccCc
Confidence            457778888888888888888888888 65 56653

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.11  E-value=1.1e-11  Score=47.82  Aligned_cols=32  Identities=31%  Similarity=0.487  Sum_probs=28.8

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      |++ .|+++++|.|..|++.|.....|..|+++
T Consensus         1 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~   32 (42)
T 2el5_A            1 GSS-GSSGENPYECSECGKAFNRKDQLISHQRT   32 (42)
T ss_dssp             CCS-SSSSCCSEECSSSCCEESSHHHHHHHHGG
T ss_pred             CCC-CCCCCCCccCCCcChhhCCHHHHHHHHHh
Confidence            344 68999999999999999999999999875

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=1.1e-11  Score=47.73  Aligned_cols=33  Identities=15%  Similarity=0.346  Sum_probs=29.0

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      |++ .|++++||.|..|++.|.....|..|++++
T Consensus         1 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   33 (42)
T 2yte_A            1 GSS-GSSGEKPYSCAECKETFSDNNRLVQHQKMH   33 (42)
T ss_dssp             CCS-SSCSCCSCBCTTTCCBCSSHHHHHHHHHHT
T ss_pred             CCc-CcCCCCCeECCCCCCccCCHHHHHHHHHHh
Confidence            344 689999999999999999999999998753

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=1.3e-11  Score=47.50  Aligned_cols=33  Identities=21%  Similarity=0.463  Sum_probs=29.6

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      |++ .|+++++|.|..|++.|.....|..|++++
T Consensus         2 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   34 (42)
T 2ytb_A            2 SSG-SSGGEKPYRCDQCGKAFSQKGSLIVHIRVH   34 (42)
T ss_dssp             CCC-CCCSCCSBCCTTTTCCBSSHHHHHTTGGGT
T ss_pred             Ccc-ccCCCCCeeCCCccchhCCHHHHHHHHHHh
Confidence            555 789999999999999999999999998763

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=1.2e-11  Score=48.08  Aligned_cols=33  Identities=27%  Similarity=0.440  Sum_probs=29.7

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      |++ .|+++++|.|..|++.|.....|..|++++
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (44)
T 2eoj_A            3 SGS-SGTGENPYECCECGKVFSRKDQLVSHQKTH   35 (44)
T ss_dssp             SCC-SSSSCCSCEETTTTEECSSHHHHHHHHTTS
T ss_pred             Ccc-ccCCCcCeeCCCCCCccCCHHHHHHHHHHc
Confidence            555 799999999999999999999999998763

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.09  E-value=1.4e-10  Score=49.39  Aligned_cols=40  Identities=38%  Similarity=0.682  Sum_probs=36.3

Q ss_pred             CcChHHHHHHHhHhhCCCceeccc--ccccccchhhHHHhHh
Q psy12265          1 MEKFTYLKVHNRVHLGLKPYGCEV--CGRHFRQWGDLKYHKA   40 (71)
Q Consensus         1 f~~~~~l~~h~~~~~~~~~~~c~~--c~~~~~~~~~l~~h~~   40 (71)
                      |.....|..|+++|.+++||.|..  |++.|.....|..|++
T Consensus        29 f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~   70 (72)
T 2epa_A           29 YFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRR   70 (72)
T ss_dssp             ESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTT
T ss_pred             cCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhh
Confidence            566789999999999999999965  9999999999999976

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.09  E-value=8.2e-11  Score=43.80  Aligned_cols=33  Identities=30%  Similarity=0.436  Sum_probs=25.7

Q ss_pred             HhhCCCceecccccccccchhhHHHhHhhhcCCc
Q psy12265         13 VHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDV   46 (71)
Q Consensus        13 ~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~   46 (71)
                      .|.+++||.|..|++.|.....|..|++ .|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~-~H~~~   35 (36)
T 2elq_A            3 SGSSGKPFKCSLCEYATRSKSNLKAHMN-RHSTE   35 (36)
T ss_dssp             SSCCCCSEECSSSSCEESCHHHHHHHHH-HSSTT
T ss_pred             CCCCCCCccCCCCCchhCCHHHHHHHHH-HhccC
Confidence            4667788888888888888888888876 67654

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.09  E-value=5.2e-11  Score=44.87  Aligned_cols=35  Identities=31%  Similarity=0.503  Sum_probs=30.7

Q ss_pred             hhCCCceecc--cccccccchhhHHHhHhhhcCCcCce
Q psy12265         14 HLGLKPYGCE--VCGRHFRQWGDLKYHKASLHSDVKAF   49 (71)
Q Consensus        14 ~~~~~~~~c~--~c~~~~~~~~~l~~h~~~~~~~~~~~   49 (71)
                      |.+++||.|.  .|++.|...+.|..|++ .|+++++|
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~-~H~~~k~~   37 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKH-KHEMTLKF   37 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHH-HHHTTTTT
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHH-HhCCCCCC
Confidence            4678999999  59999999999999997 79888876

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=1.4e-11  Score=48.01  Aligned_cols=32  Identities=25%  Similarity=0.384  Sum_probs=29.2

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      |++ .|+++++|.|.+|++.|.....|..|+++
T Consensus         3 H~~-~H~~~k~~~C~~C~k~F~~~~~L~~H~~~   34 (44)
T 2epv_A            3 SGS-SGSGEKPYECNECGKAFIWKSLLIVHERT   34 (44)
T ss_dssp             CCC-CCCCCCSEECSSSCCEESSHHHHHHHHGG
T ss_pred             CCc-ccCCCcCeECCCCCcccCchHHHHHHHhH
Confidence            555 79999999999999999999999999875

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.08  E-value=7.5e-11  Score=43.91  Aligned_cols=33  Identities=27%  Similarity=0.440  Sum_probs=25.4

Q ss_pred             HhhCCCceecccccccccchhhHHHhHhhhcCCc
Q psy12265         13 VHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDV   46 (71)
Q Consensus        13 ~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~   46 (71)
                      .|.+++||.|..|++.|.....|..|++ .|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~-~H~~~   35 (36)
T 2elv_A            3 SGSSGLLYDCHICERKFKNELDRDRHML-VHGDK   35 (36)
T ss_dssp             CSCCCCCEECSSSCCEESSHHHHHHHHT-TTSTT
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHHH-HhcCC
Confidence            3567788888888888888888888876 67654

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=2.1e-11  Score=47.90  Aligned_cols=33  Identities=30%  Similarity=0.519  Sum_probs=29.8

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      |++ .|+++++|.|..|++.|.....|..|++++
T Consensus         3 H~~-~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H   35 (46)
T 2emf_A            3 SGS-SGTGGKHFECTECGKAFTRKSTLSMHQKIH   35 (46)
T ss_dssp             CCS-SSSSSCCEECSSSCCEESCHHHHHHHGGGT
T ss_pred             ccc-ccCCCCCeECCCCCchhCCHHHHHHHHHHh
Confidence            555 799999999999999999999999999864

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=99.08  E-value=4e-11  Score=45.19  Aligned_cols=25  Identities=28%  Similarity=0.475  Sum_probs=20.0

Q ss_pred             hCCCceecccccccccchhhHHHhH
Q psy12265         15 LGLKPYGCEVCGRHFRQWGDLKYHK   39 (71)
Q Consensus        15 ~~~~~~~c~~c~~~~~~~~~l~~h~   39 (71)
                      .+++||.|..|+++|...++|.+|+
T Consensus         4 ~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            4 LKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCccCeECCCCCCccCCHhHccCcC
Confidence            4678888888888888888888875

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.08  E-value=1.6e-11  Score=47.31  Aligned_cols=33  Identities=24%  Similarity=0.447  Sum_probs=29.2

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      |++ .|++++||.|..|++.|.....|..|++++
T Consensus         2 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   34 (42)
T 2eos_A            2 SSG-SSGGEKPYPCEICGTRFRHLQTLKSHLRIH   34 (42)
T ss_dssp             CCS-CCSSSCCBCCSSSCCCBSSHHHHHHHTTTT
T ss_pred             CCc-ccCCCCCEECCCCCCccCCHHHHHHHHHhc
Confidence            444 689999999999999999999999998763

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=1.8e-11  Score=48.10  Aligned_cols=33  Identities=21%  Similarity=0.466  Sum_probs=29.6

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      |++ .|+++++|.|..|++.|.....|..|++++
T Consensus         3 H~~-~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H   35 (46)
T 2emi_A            3 SGS-SGTGERHYECSECGKAFIQKSTLSMHQRIH   35 (46)
T ss_dssp             CCC-SCSSCCCEECSSSCCEESSHHHHHHHHGGG
T ss_pred             CCc-ccCCCCCCCCCCCCcccCCHHHHHHHHhHh
Confidence            555 799999999999999999999999998763

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=2.2e-11  Score=47.82  Aligned_cols=34  Identities=21%  Similarity=0.472  Sum_probs=30.1

Q ss_pred             HhHhhhcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         37 YHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        37 ~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      +|++ .|+++++|.|..|++.|.....|..|++++
T Consensus         2 ~H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2ep3_A            2 SSGS-SGTGEKPYRCAECGKAFTDRSNLFTHQKIH   35 (46)
T ss_dssp             CCCS-SSSCCCSEECSSSCCEESSHHHHHHHHTTT
T ss_pred             CCCC-CCCCCCCeECCCCCchhCCHHHHHHHHHHc
Confidence            3666 799999999999999999999999998763

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=2.1e-11  Score=47.91  Aligned_cols=33  Identities=27%  Similarity=0.510  Sum_probs=29.7

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      |++ .|+++++|.|..|++.|.....|..|++++
T Consensus         3 H~~-~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H   35 (46)
T 2ytp_A            3 SGS-SGTGERHYECSECGKAFARKSTLIMHQRIH   35 (46)
T ss_dssp             CCC-SSCCCCCEECSSSCCEESSHHHHHHHHTTT
T ss_pred             ccc-CcCCCCCeECCcCCcccCCHHHHHHHHHHh
Confidence            555 799999999999999999999999998763

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.06  E-value=4.8e-11  Score=44.72  Aligned_cols=33  Identities=24%  Similarity=0.305  Sum_probs=24.9

Q ss_pred             HhhCCCceecccccccccch-hhHHHhHhhhcCCc
Q psy12265         13 VHLGLKPYGCEVCGRHFRQW-GDLKYHKASLHSDV   46 (71)
Q Consensus        13 ~~~~~~~~~c~~c~~~~~~~-~~l~~h~~~~~~~~   46 (71)
                      +|.+++||.|..|++.|... +.|..|++ .|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~~L~~H~~-~H~~~   36 (37)
T 2elp_A            3 SGSSGRAMKCPYCDFYFMKNGSDLQRHIW-AHEGV   36 (37)
T ss_dssp             SCCCCCCEECSSSSCEECSSCHHHHHHHH-HHHTC
T ss_pred             CCCCCCCeECCCCChhhccCHHHHHHHHH-hcCCC
Confidence            46677788888888888887 78888876 56654

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.06  E-value=8.9e-11  Score=43.64  Aligned_cols=33  Identities=24%  Similarity=0.328  Sum_probs=25.6

Q ss_pred             HhhCCCceecccccccccchhhHHHhHhhhcCCc
Q psy12265         13 VHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDV   46 (71)
Q Consensus        13 ~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~   46 (71)
                      +|.+++||.|..|++.|.....|..|++ .|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~-~H~~~   35 (36)
T 2elt_A            3 SGSSGKPYKCPQCSYASAIKANLNVHLR-KHTGE   35 (36)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHHH-HHTCC
T ss_pred             CCCCCCCCCCCCCCcccCCHHHHHHHHH-HccCC
Confidence            4667788888888888888888888876 67654

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=2.7e-11  Score=47.53  Aligned_cols=33  Identities=21%  Similarity=0.439  Sum_probs=29.7

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      |++ .|+++++|.|..|++.|.....|..|++++
T Consensus         3 H~~-~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H   35 (46)
T 2ytn_A            3 SGS-SGTGKKPYKCNECGKVFTQNSHLARHRGIH   35 (46)
T ss_dssp             CCC-CCSCCSSCBCTTTCCBCSSHHHHHHHGGGT
T ss_pred             CCc-CCCCCcCeECCCCCCeeCCHHHHHHHhhhc
Confidence            555 799999999999999999999999998764

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.06  E-value=2e-11  Score=47.52  Aligned_cols=33  Identities=12%  Similarity=0.321  Sum_probs=29.7

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      |++ .|++++||.|..|++.|.....|..|++++
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (44)
T 2yu5_A            3 SGS-SGAGENPFKCSKCDRVFTQRNYLVQHERTH   35 (44)
T ss_dssp             CSC-CCSCCCSEECSSSSCEESSSHHHHHHHHHC
T ss_pred             Ccc-ccCCCCCeECCCCCchhCCHHHHHHHhHhc
Confidence            566 799999999999999999999999998753

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=2.2e-11  Score=47.29  Aligned_cols=33  Identities=21%  Similarity=0.374  Sum_probs=29.7

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      |++ .|+++++|.|..|++.|.....|..|++++
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (44)
T 2en7_A            3 SGS-SGTGMKPYVCNECGKAFRSKSYLIIHTRTH   35 (44)
T ss_dssp             SCC-CSSSSSSSCCTTTCCCCSSHHHHHHHHTTT
T ss_pred             CCc-CCCCCcCeECCCCCCccCCHHHHHHHhhhc
Confidence            566 799999999999999999999999998763

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=1.8e-11  Score=48.08  Aligned_cols=33  Identities=18%  Similarity=0.380  Sum_probs=29.5

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      |++ .|+++++|.|..|++.|.....|..|++++
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2eoh_A            3 SGS-SGSGKKPYECKECRKTFIQIGHLNQHKRVH   35 (46)
T ss_dssp             CCC-SCCCSCSCCCSSSCCCCSSHHHHHHHHHHC
T ss_pred             CCC-CcCCCCCcCCCCcCchhCCHHHHHHHHHHh
Confidence            555 789999999999999999999999998763

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=2.2e-11  Score=47.83  Aligned_cols=33  Identities=21%  Similarity=0.425  Sum_probs=29.7

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      |++ .|+++++|.|..|++.|.....|..|++++
T Consensus         3 H~~-~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H   35 (46)
T 2enf_A            3 SGS-SGTGEKPYKCNECGKVFTQNSHLVRHRGIH   35 (46)
T ss_dssp             CCC-CCCCCCSCBCSSSCCBCSSHHHHHHHHTTT
T ss_pred             CCc-CCCCCcCeECCCCCcccCCHHHHHHHHHhh
Confidence            555 789999999999999999999999998763

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=2.8e-11  Score=47.45  Aligned_cols=33  Identities=24%  Similarity=0.493  Sum_probs=29.7

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      |++ .|+++++|.|..|++.|.....|..|++++
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2yts_A            3 SGS-SGTGEKPYICNECGKSFIQKSHLNRHRRIH   35 (46)
T ss_dssp             CSC-CCCSCCSEECSSSCCEESSHHHHHHHGGGT
T ss_pred             CCC-CCCCCcCEECCCCChhhCChHHHHHHHHhc
Confidence            555 789999999999999999999999998763

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.06  E-value=2.7e-11  Score=47.49  Aligned_cols=34  Identities=24%  Similarity=0.364  Sum_probs=30.2

Q ss_pred             HhHhhhcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         37 YHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        37 ~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      +|++ .|+++++|.|..|++.|.....|..|++++
T Consensus         2 ~H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2el4_A            2 SSGS-SGTGVKPYGCSQCAKTFSLKSQLIVHQRSH   35 (46)
T ss_dssp             CCCC-CSCCCCSEECSSSSCEESSHHHHHHHGGGS
T ss_pred             cccc-CCCCCCceECCCCCchhCCHHHHHHHHHHh
Confidence            3665 799999999999999999999999999763

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=2.4e-11  Score=47.67  Aligned_cols=33  Identities=24%  Similarity=0.402  Sum_probs=29.6

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      |++ .|+++++|.|..|++.|.....|..|++++
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2emg_A            3 SGS-SGTGENPFICSECGKVFTHKTNLIIHQKIH   35 (46)
T ss_dssp             CCC-CCCSCCSCBCTTTCCBCSSHHHHHHHHTTT
T ss_pred             CCC-CCCCCCCEECCccCcccCCHHHHHHHHHHh
Confidence            555 789999999999999999999999998763

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.06  E-value=2.2e-11  Score=47.85  Aligned_cols=33  Identities=21%  Similarity=0.372  Sum_probs=29.6

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      |++ .|++++||.|..|++.|.....|..|++++
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2eoy_A            3 SGS-SGQKEKCFKCNKCEKTFSCSKYLTQHERIH   35 (46)
T ss_dssp             CCC-CCCCSCCEECSSSCCEESSSHHHHHHHTTC
T ss_pred             Ccc-ccCCCCCEECcCCCCcCCCHHHHHHHHHHc
Confidence            555 789999999999999999999999998764

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=2.5e-11  Score=47.65  Aligned_cols=34  Identities=21%  Similarity=0.385  Sum_probs=30.1

Q ss_pred             HhHhhhcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         37 YHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        37 ~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      +|++ .|+++++|.|..|++.|.....|..|++++
T Consensus         2 ~H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2ytj_A            2 SSGS-SGTGEKPYICAECGKAFTIRSNLIKHQKIH   35 (46)
T ss_dssp             CSSC-TTSSCCSEECSSSCCEESSHHHHHHHHHHT
T ss_pred             Cccc-CCCCCcCeECCCCChhhCCHHHHHHHHHHc
Confidence            3666 799999999999999999999999998753

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.06  E-value=1.3e-10  Score=44.21  Aligned_cols=32  Identities=16%  Similarity=0.169  Sum_probs=25.1

Q ss_pred             hhCCCceeccc--ccccccchhhHHHhHhhhcCCc
Q psy12265         14 HLGLKPYGCEV--CGRHFRQWGDLKYHKASLHSDV   46 (71)
Q Consensus        14 ~~~~~~~~c~~--c~~~~~~~~~l~~h~~~~~~~~   46 (71)
                      +.+++||.|..  |+++|...+.|..|++ .|+++
T Consensus         4 ~~gekp~~C~~~~C~k~F~~~~~L~~H~r-~Htg~   37 (38)
T 2eln_A            4 GSSGILLKCPTDGCDYSTPDKYKLQAHLK-VHTAL   37 (38)
T ss_dssp             SSCCCCEECSSSSCCCEESCHHHHHHHHH-HHSCC
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHH-hcCCC
Confidence            45778888875  8888888888888887 67764

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=2.5e-11  Score=47.15  Aligned_cols=33  Identities=18%  Similarity=0.354  Sum_probs=29.6

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      |++ .|+++++|.|..|++.|.....|..|++++
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (44)
T 2eof_A            3 SGS-SGTGEKPYECNECQKAFNTKSNLMVHQRTH   35 (44)
T ss_dssp             CSS-CCSCCCSEECTTTCCEESCHHHHHHHHHHT
T ss_pred             Ccc-CCCCCCCeECCCCCcccCCHhHHHHHHHHh
Confidence            555 799999999999999999999999998753

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=1.3e-11  Score=47.53  Aligned_cols=32  Identities=22%  Similarity=0.439  Sum_probs=28.7

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      |++ .|++++||.|..|++.|.....|..|+++
T Consensus         2 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~   33 (42)
T 2en2_A            2 SSG-SSGGEKPYKCETCGARFVQVAHLRAHVLI   33 (42)
T ss_dssp             CCC-CCCSSCSEECTTTCCEESSHHHHHHHTHH
T ss_pred             CCc-ccCCCCCEeCCCcChhhCCHHHHHHHHHH
Confidence            445 68999999999999999999999999875

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=2.6e-11  Score=47.58  Aligned_cols=33  Identities=21%  Similarity=0.424  Sum_probs=29.7

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      |++ .|+++++|.|..|++.|.....|..|++++
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2ene_A            3 SGS-SGTGEKPYKCNECGKVFRHNSYLSRHQRIH   35 (46)
T ss_dssp             CCS-SCCCSSSEECSSSCCEESSHHHHHHHHTTT
T ss_pred             ccc-CCCCCCCeECCCCCchhCChHHHHHHHhhc
Confidence            565 799999999999999999999999998763

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.06  E-value=2.3e-11  Score=46.81  Aligned_cols=33  Identities=15%  Similarity=0.334  Sum_probs=29.0

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      |++ .|+++++|.|..|++.|.....|..|++++
T Consensus         2 H~~-~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H   34 (42)
T 2epc_A            2 SSG-SSGGETPYLCGQCGKSFTQRGSLAVHQRSC   34 (42)
T ss_dssp             CCS-CCCSSCCEECSSSCCEESSHHHHHHHHHHT
T ss_pred             CCc-cCCCCCCeECCCCCcccCCHHHHHHHhhhc
Confidence            444 688999999999999999999999998753

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=2.7e-11  Score=47.54  Aligned_cols=33  Identities=24%  Similarity=0.464  Sum_probs=29.6

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      |++ .|+++++|.|..|++.|.....|..|++++
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2epz_A            3 SGS-SGTGEKPFDCIDCGKAFSDHIGLNQHRRIH   35 (46)
T ss_dssp             CCS-SCCCCCSBCCTTTCCCBSSHHHHHHHHTTT
T ss_pred             CCC-CcCCCCCeECCCCCceeCCHHHHHHHHHHh
Confidence            555 789999999999999999999999998763

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=2.5e-11  Score=47.71  Aligned_cols=33  Identities=21%  Similarity=0.483  Sum_probs=29.4

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      |++ .|+++++|.|..|++.|.....|..|++++
T Consensus         3 h~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2eon_A            3 SGS-SGTGEKPYKCQVCGKAFRVSSHLVQHHSVH   35 (46)
T ss_dssp             CSS-SCSSCCSCBCSSSCCBCSSHHHHHHHTTTT
T ss_pred             CCC-CCCCCcccCCCCCCcccCcHHHHHHHHHhc
Confidence            455 789999999999999999999999998763

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=2.8e-11  Score=47.52  Aligned_cols=33  Identities=21%  Similarity=0.446  Sum_probs=29.7

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      |++ .|+++++|.|..|++.|.....|..|++++
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2eq1_A            3 SGS-SGTGEKPYKCNECGKAFRAHSNLTTHQVIH   35 (46)
T ss_dssp             CCC-CCCCSCCCCCTTTTCCCSSHHHHHHHHTTT
T ss_pred             ccc-ccCCCCCeECCcCChhhCCHHHHHHHHHHh
Confidence            565 789999999999999999999999998763

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=2.3e-11  Score=47.72  Aligned_cols=33  Identities=21%  Similarity=0.486  Sum_probs=29.8

Q ss_pred             HhHhhhcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265         37 YHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        37 ~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      +|++ .|+++++|.|..|++.|.....|..|+++
T Consensus         2 ~H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eml_A            2 SSGS-SGTGEKPYECSVCGKAFSHRQSLSVHQRI   34 (46)
T ss_dssp             CCCC-CCSSCCSEECSSSCCEESSHHHHHHHHGG
T ss_pred             CccC-CcCCCCCeeCCCcCCccCCHHHHHHHHHH
Confidence            3666 79999999999999999999999999875

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=2.9e-11  Score=47.40  Aligned_cols=33  Identities=24%  Similarity=0.398  Sum_probs=29.7

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      |++ .|+++++|.|..|++.|.....|..|++++
T Consensus         3 H~~-~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2eop_A            3 SGS-SGTGEKPHECRECGKSFSFNSQLIVHQRIH   35 (46)
T ss_dssp             CCC-SCCCCCSCBCTTTCCBCSSHHHHHHHHTTT
T ss_pred             Ccc-ccCCCCCeeCCCCCchhCCHHHHHHHHHHc
Confidence            566 799999999999999999999999998763

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=2.7e-11  Score=47.49  Aligned_cols=33  Identities=21%  Similarity=0.431  Sum_probs=29.7

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      |++ .|+++++|.|..|++.|.....|..|++++
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2eq4_A            3 SGS-SGTGEKLYNCKECGKSFSRAPCLLKHERLH   35 (46)
T ss_dssp             CCC-CSSCCCCCCBTTTTBCCSCHHHHHHHHHHC
T ss_pred             Ccc-cCCCCCCeECCCCCCccCchHHHHHHHHhc
Confidence            566 799999999999999999999999998753

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=99.05  E-value=1.6e-10  Score=45.85  Aligned_cols=35  Identities=31%  Similarity=0.668  Sum_probs=28.2

Q ss_pred             HhhCCCceecccccccccchhhHHHhHhhhcCCcC
Q psy12265         13 VHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVK   47 (71)
Q Consensus        13 ~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~   47 (71)
                      +|.+++||.|..|++.|....+|..|++..|+++.
T Consensus         1 ~Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~   35 (48)
T 3iuf_A            1 GEDRDKPYACDICGKRYKNRPGLSYHYAHSHLAEE   35 (48)
T ss_dssp             -CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC--
T ss_pred             CCCCCcCEECCCcCcccCCHHHHHHHhhhhcCCCC
Confidence            47789999999999999999999999863577664

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.05  E-value=2.8e-11  Score=45.50  Aligned_cols=29  Identities=17%  Similarity=0.096  Sum_probs=26.7

Q ss_pred             hcCCcCceeCChhhHhhhchHHHHHh-hhc
Q psy12265         42 LHSDVKAFQCEYCGKDFARKYQAHSY-HQI   70 (71)
Q Consensus        42 ~~~~~~~~~C~~c~~~f~~~~~l~~h-~~~   70 (71)
                      .|++++||.|..|++.|.....|..| +++
T Consensus         3 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~   32 (37)
T 2elm_A            3 SGSSGHLYYCSQCHYSSITKNCLKRHVIQK   32 (37)
T ss_dssp             SSSSSCEEECSSSSCEEECHHHHHHHHHHH
T ss_pred             ccCCCcCeECCCCCcccCCHHHHHHHHHHH
Confidence            58899999999999999999999999 764

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=3.2e-11  Score=47.31  Aligned_cols=33  Identities=24%  Similarity=0.452  Sum_probs=29.6

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      |++ .|+++++|.|..|++.|.....|..|++++
T Consensus         3 H~~-~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H   35 (46)
T 2eq0_A            3 SGS-SGTGEKPYKCHECGKVFRRNSHLARHQLIH   35 (46)
T ss_dssp             CCC-CTTCCCCEECTTTCCEESSHHHHHHHHTTT
T ss_pred             CCc-CCCCCCCeECCCCCchhCCHHHHHHHHHHc
Confidence            555 789999999999999999999999998763

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=3e-11  Score=47.38  Aligned_cols=33  Identities=21%  Similarity=0.357  Sum_probs=29.6

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      |++ .|+++++|.|..|++.|.....|..|++++
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2ytf_A            3 SGS-SGTGEKPFECSECQKAFNTKSNLIVHQRTH   35 (46)
T ss_dssp             CCC-SSCCCCSEECSSSCCEESSHHHHHHHHHTS
T ss_pred             CCC-CCCCCCCcCCCCCCcccCCHHHHHHHHHHh
Confidence            555 789999999999999999999999998763

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=3.3e-11  Score=47.33  Aligned_cols=33  Identities=15%  Similarity=0.435  Sum_probs=29.3

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      |++ .|+++++|.|..|++.|.....|..|++++
T Consensus         3 h~~-~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H   35 (46)
T 2enh_A            3 SGS-SGTGEKPYECDVCRKAFSHHASLTQHQRVH   35 (46)
T ss_dssp             CCC-CCCCSSSCBCTTTCCBCSSSHHHHHHGGGS
T ss_pred             CCC-CcCCCCCcCCCCcCchhCCHHHHHHHHHHh
Confidence            445 689999999999999999999999998864

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=3e-11  Score=47.37  Aligned_cols=33  Identities=27%  Similarity=0.521  Sum_probs=29.7

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      |++ .|+++++|.|..|++.|.....|..|++++
T Consensus         3 H~~-~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2yrj_A            3 SGS-SGTGEKPYRCGECGKAFAQKANLTQHQRIH   35 (46)
T ss_dssp             CCC-CCCCCCCEECSSSCCEESSHHHHHHHHTTT
T ss_pred             Ccc-CCCCCCCeECCCCCCccCCHHHHHHHHHHc
Confidence            555 789999999999999999999999998763

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.04  E-value=4.8e-11  Score=44.10  Aligned_cols=29  Identities=21%  Similarity=0.339  Sum_probs=26.6

Q ss_pred             cCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         43 HSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        43 ~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      |+++++|.|..|++.|.....|..|++++
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h   30 (35)
T 2elx_A            2 SSGSSGYVCALCLKKFVSSIRLRSHIREV   30 (35)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHT
T ss_pred             CCCCCCeECCCCcchhCCHHHHHHHHHHH
Confidence            67899999999999999999999998753

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.04  E-value=3.2e-11  Score=46.91  Aligned_cols=33  Identities=12%  Similarity=0.272  Sum_probs=29.6

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      |++ .|+++++|.|..|++.|.....|..|++++
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (44)
T 2emb_A            3 SGS-SGHTRKRYECSKCQATFNLRKHLIQHQKTH   35 (44)
T ss_dssp             CCS-CCCCCSSEECTTTCCEESCHHHHHHHGGGG
T ss_pred             ccc-ccCCCCCeECCCCCCccCCHHHHHHHHHHc
Confidence            555 789999999999999999999999998763

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=2.4e-11  Score=47.71  Aligned_cols=33  Identities=21%  Similarity=0.485  Sum_probs=29.7

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      |++ .|+++++|.|..|++.|.....|..|++++
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2eq2_A            3 SGS-SGTGGKPYQCNECGKAFSQTSKLARHQRVH   35 (46)
T ss_dssp             CCC-SSSSSCSSSCCSSCCCCSSHHHHHHHGGGG
T ss_pred             ccc-ccCCCCCeECCCCCcccCCHHHHHHHHHHc
Confidence            565 799999999999999999999999998763

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=3.5e-11  Score=47.22  Aligned_cols=33  Identities=33%  Similarity=0.642  Sum_probs=29.7

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      |++ .|+++++|.|..|++.|.....|..|++++
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2ep2_A            3 SGS-SGTGEKPYECSICGKSFTKKSQLHVHQQIH   35 (46)
T ss_dssp             SSS-CSSCCCSEECSSSCCEESSHHHHHHHHHTT
T ss_pred             CCC-CCCCCcCcCCCCCCcccCCHHHHHHHHHHh
Confidence            555 789999999999999999999999998763

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.04  E-value=3.1e-11  Score=47.37  Aligned_cols=33  Identities=24%  Similarity=0.509  Sum_probs=29.5

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      |++ .|+++++|.|..|++.|.....|..|++++
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2em7_A            3 SGS-SGTGEKPYKCEECGKGFICRRDLYTHHMVH   35 (46)
T ss_dssp             CCC-SSSCCCSEECSSSCCEESCHHHHHHHGGGG
T ss_pred             CCC-CCCCCcCccCCCccchhCCHHHHHHHHHHh
Confidence            555 789999999999999999999999998763

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.04  E-value=2.9e-11  Score=47.47  Aligned_cols=32  Identities=28%  Similarity=0.532  Sum_probs=29.3

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      |++ .|+++++|.|..|++.|.....|..|+++
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ema_A            3 SGS-SGTGEKRYKCNECGKVFSRNSQLSQHQKI   34 (46)
T ss_dssp             SCS-SCTTSCCEECSSSCCEESSHHHHHHHHTG
T ss_pred             Ccc-CCCCCcCcCCCCCcchhCCHHHHHHHHHh
Confidence            565 79999999999999999999999999875

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=2.4e-11  Score=47.69  Aligned_cols=33  Identities=21%  Similarity=0.437  Sum_probs=29.6

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      |++ .|+++++|.|..|++.|.....|..|++++
T Consensus         3 H~~-~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H   35 (46)
T 2yti_A            3 SGS-SGTGEKPYKCNECGKVFTQNSHLARHRGIH   35 (46)
T ss_dssp             CCC-CCSCCCTTCCSSSCCCCSSHHHHHHHHTTT
T ss_pred             CCc-CCCCCcCeECCCCCcccCChhHHHHHhHhc
Confidence            555 789999999999999999999999998763

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=3e-11  Score=47.45  Aligned_cols=34  Identities=35%  Similarity=0.606  Sum_probs=30.0

Q ss_pred             HhHhhhcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         37 YHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        37 ~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      +|++ .|+++++|.|..|++.|.....|..|++++
T Consensus         2 ~H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2yth_A            2 SSGS-SGSGEKPFQCEECGKRFTQNSHLHSHQRVH   35 (46)
T ss_dssp             CCCS-CCCCSSSBCCSSSCCCBSSHHHHHHHGGGG
T ss_pred             Cccc-CCCCCcCCCCCCCCcccCCHHHHHHHHHhc
Confidence            3565 789999999999999999999999998753

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=99.04  E-value=5.4e-11  Score=44.02  Aligned_cols=29  Identities=21%  Similarity=0.423  Sum_probs=26.7

Q ss_pred             cCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         43 HSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        43 ~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      |+++++|.|..|++.|.....|..|++++
T Consensus         2 H~~~k~~~C~~C~k~f~~~~~l~~H~~~H   30 (35)
T 1srk_A            2 SSGKRPFVCRICLSAFTTKANCARHLKVH   30 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGG
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHHc
Confidence            77899999999999999999999998763

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=3e-11  Score=47.45  Aligned_cols=33  Identities=24%  Similarity=0.530  Sum_probs=29.5

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      |++ .|+++++|.|..|++.|.....|..|++++
T Consensus         3 h~~-~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H   35 (46)
T 2elz_A            3 SGS-SGSVEKPYKCEDCGKGYNRRLNLDMHQRVH   35 (46)
T ss_dssp             CCS-CCCCCSSCBCSSSCCBCSSHHHHHHHGGGG
T ss_pred             CCC-CCCCCCCeeCcccCchhCCHHHHHHHHHhc
Confidence            555 789999999999999999999999998763

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=3.9e-11  Score=47.05  Aligned_cols=33  Identities=36%  Similarity=0.622  Sum_probs=29.8

Q ss_pred             HhHhhhcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265         37 YHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        37 ~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      .|++ .|+++++|.|..|++.|.....|..|+++
T Consensus         2 ~H~~-~H~~~~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2en1_A            2 SSGS-SGSGEKPFKCEECGKRFTQNSQLHSHQRV   34 (46)
T ss_dssp             CSTT-CCCCCCSEEETTTTEEESSHHHHHHHGGG
T ss_pred             Cccc-CCCCCCCeeCCCCCcccCCHHHHHHHHHH
Confidence            3666 79999999999999999999999999875

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.04  E-value=2.6e-11  Score=47.57  Aligned_cols=32  Identities=13%  Similarity=0.270  Sum_probs=29.3

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      |++ .|+++++|.|..|++.|.....|..|+++
T Consensus         3 H~~-~H~~~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2em0_A            3 SGS-SGMGEKTWKCRECDMCFSQASSLRLHQNV   34 (46)
T ss_dssp             CCC-CSCCCCCCCCSSSCCCCSSHHHHHHHGGG
T ss_pred             CcC-ccCCCcCeECCCCCcccCCHHHHHHHHHH
Confidence            566 79999999999999999999999999875

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=1.8e-11  Score=48.11  Aligned_cols=33  Identities=21%  Similarity=0.395  Sum_probs=29.6

Q ss_pred             HhHhhhcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265         37 YHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        37 ~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      +|++ .|+++++|.|..|++.|...+.|..|+++
T Consensus         2 ~H~~-~H~~~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2eoo_A            2 SSGS-SGSGERPYGCNECGKNFGRHSHLIEHLKR   34 (46)
T ss_dssp             CCCC-CCSCCCCEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCC-CCCCCCCEEccccCcccCCHHHHHHHHHH
Confidence            3666 79999999999999999999999999875

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=3.4e-11  Score=47.28  Aligned_cols=33  Identities=21%  Similarity=0.340  Sum_probs=29.5

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      |++ .|+++++|.|..|++.|.....|..|++++
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2ytq_A            3 SGS-SGAGEKPYGCSECGKAFSSKSYLIIHMRTH   35 (46)
T ss_dssp             CSS-CSSCCCSCBCSSSCCBCSCHHHHHHHHTTT
T ss_pred             CCc-CcCCCCCcCCCccChhhCChHHHHHHHHHh
Confidence            555 789999999999999999999999998763

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=3e-11  Score=47.38  Aligned_cols=33  Identities=21%  Similarity=0.496  Sum_probs=29.7

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      |++ .|+++++|.|..|++.|.....|..|++++
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2ytr_A            3 SGS-SGTGEKPYKCNECGKAFSQTSKLARHQRIH   35 (46)
T ss_dssp             SSC-CCSSCCTTCCTTTCCCCSSHHHHHHHHTTT
T ss_pred             CCc-CCCCCcCcCCCCCCCccCCHHHHHHHHHhc
Confidence            565 799999999999999999999999998763

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.03  E-value=1.9e-11  Score=47.60  Aligned_cols=32  Identities=28%  Similarity=0.360  Sum_probs=28.6

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      |++ .|+++++|.|..|++.|.....|..|+++
T Consensus         1 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~   32 (44)
T 2emx_A            1 GSS-GSSGEKPFGCSCCEKAFSSKSYLLVHQQT   32 (44)
T ss_dssp             CCC-CCSSCCCEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCC-CcCCCcCccCCCCCcccCCHHHHHHHHHH
Confidence            344 68999999999999999999999999875

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=1.8e-11  Score=48.11  Aligned_cols=33  Identities=18%  Similarity=0.404  Sum_probs=29.6

Q ss_pred             HhHhhhcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265         37 YHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        37 ~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      +|++ .|+++++|.|..|++.|.....|..|+++
T Consensus         2 ~H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eoz_A            2 SSGS-SGTGEKPYSCNVCGKAFVLSAHLNQHLRV   34 (46)
T ss_dssp             CSCC-CCSSCCSEEETTTTEEESSHHHHHHHHHH
T ss_pred             Cccc-cCCCCCCeECcccChhhCCHHHHHHHHHH
Confidence            3666 79999999999999999999999999875

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.03  E-value=3.8e-11  Score=47.06  Aligned_cols=33  Identities=21%  Similarity=0.397  Sum_probs=29.7

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      |++ .|+++++|.|..|++.|.....|..|++++
T Consensus         3 H~~-~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2en8_A            3 SGS-SGSGEKSHTCDECGKNFCYISALRIHQRVH   35 (46)
T ss_dssp             CCC-CCCCCSSEECTTTCCEESSHHHHHHHHTTT
T ss_pred             ccc-cCCCCCCeECCCcCcccCCHHHHHHHHHHh
Confidence            565 799999999999999999999999998763

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.03  E-value=3.3e-11  Score=47.23  Aligned_cols=32  Identities=19%  Similarity=0.395  Sum_probs=29.3

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      |++ .|+++++|.|..|++.|.....|..|+++
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2em9_A            3 SGS-SGTGEKPYNCKECGKSFRWASCLLKHQRV   34 (46)
T ss_dssp             SCC-SCCCCCSEECSSSCCEESSHHHHHHHGGG
T ss_pred             CCC-CCCCCcCeECCccccccCChHHHHHHHHH
Confidence            555 79999999999999999999999999875

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=99.03  E-value=6.8e-11  Score=46.98  Aligned_cols=28  Identities=18%  Similarity=0.381  Sum_probs=26.0

Q ss_pred             hcCCcCceeCChhhHhhhchHHHHHhhh
Q psy12265         42 LHSDVKAFQCEYCGKDFARKYQAHSYHQ   69 (71)
Q Consensus        42 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~   69 (71)
                      +|+++++|.|.+|++.|.....|..|++
T Consensus         1 ~Ht~~kp~~C~~C~k~F~~~~~L~~H~~   28 (48)
T 3iuf_A            1 GEDRDKPYACDICGKRYKNRPGLSYHYA   28 (48)
T ss_dssp             -CTTTSCEECTTTCCEESSHHHHHHHHH
T ss_pred             CCCCCcCEECCCcCcccCCHHHHHHHhh
Confidence            3788999999999999999999999998

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.03  E-value=3.5e-11  Score=47.24  Aligned_cols=34  Identities=26%  Similarity=0.465  Sum_probs=30.1

Q ss_pred             HhHhhhcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         37 YHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        37 ~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      +|++ .|+++++|.|.+|++.|.....|..|++++
T Consensus         2 ~H~~-~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2em5_A            2 SSGS-SGSSTKSHQCHECGRGFTLKSHLNQHQRIH   35 (46)
T ss_dssp             CCCC-CCCCSCSEECSSSCCEESSHHHHHHHHTTT
T ss_pred             CCcC-CCCCCCCeECCcCCCccCCHHHHHHHHHHh
Confidence            3666 789999999999999999999999998763

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=2.9e-11  Score=47.43  Aligned_cols=33  Identities=24%  Similarity=0.360  Sum_probs=29.6

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      |++ .|+++++|.|..|++.|.....|..|++++
T Consensus         3 H~~-~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H   35 (46)
T 2epw_A            3 SGS-SGTGEKPCKCTECGKAFCWKSQLIMHQRTH   35 (46)
T ss_dssp             CCC-CCCCCCSEECSSSCCEESSSHHHHHHHHHC
T ss_pred             Ccc-cCCCCCCeeCCCCCCccCCHHHHHHHHHHh
Confidence            555 789999999999999999999999998753

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=3.4e-11  Score=47.24  Aligned_cols=33  Identities=21%  Similarity=0.567  Sum_probs=29.6

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      |++ .|+++++|.|..|++.|.....|..|++++
T Consensus         3 H~~-~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2ysp_A            3 SGS-SGTGEKPYKCEKCGKGYNSKFNLDMHQKVH   35 (46)
T ss_dssp             CCC-CCSSCCSEEETTTTEEESCHHHHHHHHTTS
T ss_pred             CCc-CCCCCCCeECCCCCCccCCHHHHHHHHHhh
Confidence            555 789999999999999999999999998763

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=3.1e-11  Score=47.34  Aligned_cols=33  Identities=21%  Similarity=0.491  Sum_probs=29.7

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      |++ .|+++++|.|..|++.|.....|..|++++
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2eq3_A            3 SGS-SGTGEKPYECNQCGKAFSVRSSLTTHQAIH   35 (46)
T ss_dssp             CCC-SSCCCCSSEETTTTEECSSHHHHHHHHTTS
T ss_pred             ccc-CCCCCCCeECCCCChhhCCHHHHHHHHHHh
Confidence            565 789999999999999999999999998763

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.03  E-value=2e-11  Score=47.96  Aligned_cols=32  Identities=28%  Similarity=0.515  Sum_probs=29.1

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      |++ .|+++++|.|..|++.|.....|..|+++
T Consensus         3 H~~-~H~~~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2emj_A            3 SGS-SGTGEKPFECAECGKSFSISSQLATHQRI   34 (46)
T ss_dssp             CCC-CCCCCCSEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCC-CCCCCCCEECCCCCcccCCHHHHHHHHHH
Confidence            565 79999999999999999999999999875

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.02  E-value=2.1e-11  Score=47.89  Aligned_cols=32  Identities=19%  Similarity=0.376  Sum_probs=29.1

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      |++ .|+++++|.|..|++.|.....|..|+++
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2em4_A            3 SGS-SGTGQRPYECIECGKAFKTKSSLICHRRS   34 (46)
T ss_dssp             SCC-CCCCSSSEECSSSCCEESSHHHHHHHHHH
T ss_pred             Ccc-ccCCCcCcCCCCCCCccCCHHHHHHHHHh
Confidence            555 79999999999999999999999999875

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=3.2e-11  Score=47.29  Aligned_cols=32  Identities=22%  Similarity=0.488  Sum_probs=29.3

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      |++ .|+++++|.|..|++.|.....|..|+++
T Consensus         3 H~~-~H~~~~~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2eoe_A            3 SGS-SGTGEKPYKCNECGKVFTQNSHLANHQRI   34 (46)
T ss_dssp             CSS-CCCCCCSSEETTTTEECSSHHHHHHHHGG
T ss_pred             CCC-CCCCCCCeECCCcChhhCCHHHHHHHHHH
Confidence            565 79999999999999999999999999875

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=4e-11  Score=47.01  Aligned_cols=33  Identities=27%  Similarity=0.515  Sum_probs=29.6

Q ss_pred             HhHhhhcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265         37 YHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        37 ~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      +|++ .|+++++|.|..|++.|.....|..|+++
T Consensus         2 ~H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eme_A            2 SSGS-SGSGEKPYVCDYCGKAFGLSAELVRHQRI   34 (46)
T ss_dssp             CCCC-TTCCCCSEECSSSCCEESSHHHHHHHHGG
T ss_pred             CCCC-CCCCCCCeECCCCChhhCCHHHHHHHHHh
Confidence            3665 79999999999999999999999999875

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=4e-11  Score=47.08  Aligned_cols=33  Identities=18%  Similarity=0.558  Sum_probs=29.6

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      |++ .|+++++|.|..|++.|.....|..|++++
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2em6_A            3 SGS-SGMGEKCYKCDVCGKEFSQSSHLQTHQRVH   35 (46)
T ss_dssp             CCS-CCCCCCCCBCSSSCCBCSSHHHHHHHHTTT
T ss_pred             Ccc-ccCCCCCeECCCCCcccCCHHHHHHHHHHc
Confidence            555 789999999999999999999999998753

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=3.1e-11  Score=47.31  Aligned_cols=33  Identities=30%  Similarity=0.569  Sum_probs=29.7

Q ss_pred             HhHhhhcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265         37 YHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        37 ~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      +|++ .|+++++|.|..|++.|.....|..|+++
T Consensus         2 ~H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ep1_A            2 SSGS-SGTGEKPYECSDCGKSFIKKSQLHVHQRI   34 (46)
T ss_dssp             CCCC-CCSSCCSSCCSSSCCCCSSHHHHHHHHGG
T ss_pred             cccc-CCCCCCCcCCCCCCchhCCHHHHHHHHHH
Confidence            3565 78999999999999999999999999875

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=3.3e-11  Score=47.27  Aligned_cols=33  Identities=21%  Similarity=0.528  Sum_probs=29.5

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      |++ .|+++++|.|..|++.|.....|..|++++
T Consensus         3 H~~-~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2eoq_A            3 SGS-SGTGEKPFKCDICGKSFCGRSRLNRHSMVH   35 (46)
T ss_dssp             CCC-CSSSSCSCCCSSSCCCCSSHHHHHHHHHHT
T ss_pred             CCC-CCCCCCCcCCCcCCchhCCHHHHHHHHHHc
Confidence            555 789999999999999999999999998753

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.02  E-value=1.8e-10  Score=42.78  Aligned_cols=33  Identities=36%  Similarity=0.607  Sum_probs=25.1

Q ss_pred             HhhCCCceecccccccccchhhHHHhHhhhcCCc
Q psy12265         13 VHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDV   46 (71)
Q Consensus        13 ~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~   46 (71)
                      +|.++++|.|..|++.|.....|..|++ .|+++
T Consensus         3 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~-~H~~e   35 (36)
T 2elr_A            3 SGSSGKTHLCDMCGKKFKSKGTLKSHKL-LHTAD   35 (36)
T ss_dssp             CCCCCSSCBCTTTCCBCSSHHHHHHHHH-HHSSC
T ss_pred             CCCCCCCeecCcCCCCcCchHHHHHHHH-HhcCC
Confidence            3566778888888888888888888876 67664

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=2.5e-11  Score=47.63  Aligned_cols=32  Identities=19%  Similarity=0.454  Sum_probs=29.1

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      |++ .|+++++|.|..|++.|.....|..|+++
T Consensus         3 H~~-~H~~~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2emh_A            3 SGS-SGTGERPYICTVCGKAFTDRSNLIKHQKI   34 (46)
T ss_dssp             CCC-SCSCCCSEECTTTCCEESSHHHHHHHHHH
T ss_pred             CCC-CCCCCCCcCCCCCCchhCCHHHHHHHHHh
Confidence            566 79999999999999999999999999875

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=2.3e-11  Score=47.76  Aligned_cols=32  Identities=19%  Similarity=0.440  Sum_probs=29.2

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      |++ .|+++++|.|..|++.|.....|..|+++
T Consensus         3 H~~-~H~~~~~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2em3_A            3 SGS-SGTGEKPYECKVCSKAFTQKAHLAQHQKT   34 (46)
T ss_dssp             CCC-CCSSCCSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCC-CCCCCcCeECCCCCcccCCHHHHHHHHHH
Confidence            566 79999999999999999999999999875

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=99.02  E-value=6.3e-11  Score=44.62  Aligned_cols=27  Identities=19%  Similarity=0.316  Sum_probs=25.0

Q ss_pred             cCCcCceeCChhhHhhhchHHHHHhhh
Q psy12265         43 HSDVKAFQCEYCGKDFARKYQAHSYHQ   69 (71)
Q Consensus        43 ~~~~~~~~C~~c~~~f~~~~~l~~h~~   69 (71)
                      ..+++||.|..|++.|...+.|..|+.
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~p   29 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHHH
T ss_pred             CCCccCeECCCCCCccCCHhHccCcCC
Confidence            568999999999999999999999974

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=2.1e-11  Score=47.85  Aligned_cols=32  Identities=22%  Similarity=0.405  Sum_probs=29.1

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      |++ .|++++||.|..|++.|.....|..|+++
T Consensus         3 H~~-~H~~~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2en3_A            3 SGS-SGTGEKPFQCKECGMNFSWSCSLFKHLRS   34 (46)
T ss_dssp             CCC-CSCCCCSEECSSSCCEESSSHHHHHHHHH
T ss_pred             ccc-ccCCCCCeeCcccChhhCCHHHHHHHHHH
Confidence            565 78999999999999999999999999875

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=3.5e-11  Score=47.21  Aligned_cols=32  Identities=19%  Similarity=0.513  Sum_probs=29.3

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      |++ .|+++++|.|..|++.|.....|..|+++
T Consensus         3 H~~-~H~~~~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytg_A            3 SGS-SGTGEKPFKCGECGKSYNQRVHLTQHQRV   34 (46)
T ss_dssp             CCC-CCSSCCSEECTTTCCEESSSHHHHTTGGG
T ss_pred             CCC-CCCCCCCeECCCCCcccCCHHHHHHHHHH
Confidence            565 78999999999999999999999999875

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=2.4e-11  Score=47.70  Aligned_cols=33  Identities=30%  Similarity=0.502  Sum_probs=29.5

Q ss_pred             HhHhhhcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265         37 YHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        37 ~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      +|++ .|++++||.|..|++.|.....|..|+++
T Consensus         2 ~H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2yto_A            2 SSGS-SGTGEKPYKCSDCGKAFTRKSGLHIHQQS   34 (46)
T ss_dssp             CCCC-CCCSCCCEECSSSCCEESSHHHHHHHHHH
T ss_pred             Cccc-ccCCCCCEECcccCCccCCHhHHHHHHHH
Confidence            3666 79999999999999999999999999875

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.01  E-value=2.4e-11  Score=47.75  Aligned_cols=33  Identities=18%  Similarity=0.453  Sum_probs=29.6

Q ss_pred             HhHhhhcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265         37 YHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        37 ~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      +|++ .|+++++|.|..|++.|.....|..|+++
T Consensus         2 ~H~~-~H~~~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2emk_A            2 SSGS-SGTGEKPYECKECGKAFSQTTHLIQHQRV   34 (46)
T ss_dssp             CCCC-CCSSSCSCBCSSSCCBCSCHHHHHHHHHH
T ss_pred             CCCC-ccCCCCceECCCCCchhCCHHHHHHHHHH
Confidence            3666 79999999999999999999999999875

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=2.5e-11  Score=47.64  Aligned_cols=32  Identities=31%  Similarity=0.618  Sum_probs=29.1

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      |++ .|+++++|.|..|++.|.....|..|+++
T Consensus         3 H~~-~H~~~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2emy_A            3 SGS-SGTGENPYECHECGKAFSRKYQLISHQRT   34 (46)
T ss_dssp             CCC-CCCSSCCEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCC-CCCCCcCcCCCCCCcccCcHHHHHHHHHH
Confidence            565 79999999999999999999999999875

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=2.6e-11  Score=47.55  Aligned_cols=32  Identities=19%  Similarity=0.397  Sum_probs=29.1

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      |++ .|+++++|.|..|++.|.....|..|+++
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eow_A            3 SGS-SGTGEKPYKCNECGKAFRARSSLAIHQAT   34 (46)
T ss_dssp             CCC-CSCCCCCEECTTSCCEESSHHHHHHHHHH
T ss_pred             ccC-CCCCCCCeeccccCChhcCHHHHHHHHHH
Confidence            565 79999999999999999999999999875

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.01  E-value=4.5e-11  Score=46.88  Aligned_cols=33  Identities=33%  Similarity=0.491  Sum_probs=29.3

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      |++ .|++++||.|..|++.|.....|..|++++
T Consensus         3 h~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2enc_A            3 SGS-SGSGEKPFKCEECGKGFYTNSQCYSHQRSH   35 (46)
T ss_dssp             CSS-CCCCCCSEECSSSCCEESSHHHHHHHHHHS
T ss_pred             CCC-CCCCCCCcCCCCCCCcCCChHHHHHHHHHh
Confidence            455 789999999999999999999999998753

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=2.7e-11  Score=47.51  Aligned_cols=32  Identities=19%  Similarity=0.418  Sum_probs=29.2

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      |++ .|+++++|.|..|++.|.....|..|+++
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2emm_A            3 SGS-SGTGERPHKCNECGKSFIQSAHLIQHQRI   34 (46)
T ss_dssp             CCS-CSSCCCSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CcC-CcCCCCCeeCCCCChhhCCHHHHHHHHHH
Confidence            566 79999999999999999999999999875

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=4.7e-11  Score=46.96  Aligned_cols=31  Identities=19%  Similarity=0.381  Sum_probs=28.6

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhh
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQ   69 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~   69 (71)
                      |++ .|+++++|.|..|++.|.....|..|++
T Consensus         3 H~~-~H~~~k~~~C~~C~k~F~~~~~L~~H~~   33 (47)
T 2epx_A            3 SGS-SGTGKKPYECIECGKAFIQNTSLIRHWR   33 (47)
T ss_dssp             CCC-CCCCCCSBCCSSSCCCBSSHHHHHHHHT
T ss_pred             ccc-ccCCCCCEECCccCchhCChHHHHHHhH
Confidence            555 7899999999999999999999999987

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=3.5e-11  Score=47.19  Aligned_cols=32  Identities=28%  Similarity=0.537  Sum_probs=29.1

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      |++ .|+++++|.|..|++.|.....|..|+++
T Consensus         3 H~~-~H~~~~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eor_A            3 SGS-SGTGEKPYNCEECGKAFIHDSQLQEHQRI   34 (46)
T ss_dssp             SSS-SSSCCCSEECTTTCCEESSHHHHHHHHHH
T ss_pred             CCc-CcCCCcCccCCCCCCCcCCHHHHHHHHHh
Confidence            555 78999999999999999999999999875

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=2.8e-11  Score=47.48  Aligned_cols=33  Identities=21%  Similarity=0.412  Sum_probs=29.5

Q ss_pred             HhHhhhcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265         37 YHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        37 ~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      +|++ .|+++++|.|..|++.|.....|..|+++
T Consensus         2 ~H~~-~H~~~~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eov_A            2 SSGS-SGTGEKPYKCSDCGKSFTWKSRLRIHQKC   34 (46)
T ss_dssp             CCCC-CCSSCCSCBCSSSCCBCSSHHHHHHHHHH
T ss_pred             CCCC-CCCCCCCccCCccChhhCCHHHHHHHHHh
Confidence            3666 79999999999999999999999999875

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=3e-11  Score=47.41  Aligned_cols=33  Identities=24%  Similarity=0.420  Sum_probs=29.6

Q ss_pred             HhHhhhcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265         37 YHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        37 ~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      +|++ .|+++++|.|..|++.|.....|..|+++
T Consensus         2 ~H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2emp_A            2 SSGS-SGTGVKPYMCNECGKAFSVYSSLTTHQVI   34 (46)
T ss_dssp             CCCS-CSSCCCSEECSSSCCEESCHHHHHHHHHH
T ss_pred             Cccc-ccCCCcCeECCCCCchhCCHHHHHHHHHH
Confidence            3666 79999999999999999999999999875

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.00  E-value=3.4e-10  Score=42.05  Aligned_cols=33  Identities=24%  Similarity=0.431  Sum_probs=25.2

Q ss_pred             HhhCCCceecccccccccchhhHHHhHhhhcCCc
Q psy12265         13 VHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDV   46 (71)
Q Consensus        13 ~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~   46 (71)
                      .+.+++||.|..|++.|.....|..|++ .|+++
T Consensus         3 ~~~~~k~~~C~~C~k~f~~~~~l~~H~~-~H~~~   35 (36)
T 2els_A            3 SGSSGKIFTCEYCNKVFKFKHSLQAHLR-IHTNE   35 (36)
T ss_dssp             TTSCCCCEECTTTCCEESSHHHHHHHHH-HHCCC
T ss_pred             CCCCCCCEECCCCCceeCCHHHHHHHHH-HhCCC
Confidence            3556778888888888888888888876 67654

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.00  E-value=3e-11  Score=45.27  Aligned_cols=29  Identities=21%  Similarity=0.385  Sum_probs=27.0

Q ss_pred             hcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265         42 LHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        42 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      .|+++++|.|..|++.|.....|..|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~   31 (37)
T 2elo_A            3 SGSSGRSYSCPVCEKSFSEDRLIKSHIKT   31 (37)
T ss_dssp             CCCCCCCCEETTTTEECSSHHHHHHHHHH
T ss_pred             CCCCCCCcCCCCCCCccCCHHHHHHHHHH
Confidence            58899999999999999999999999875

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=99.00  E-value=2.6e-11  Score=44.27  Aligned_cols=31  Identities=23%  Similarity=0.370  Sum_probs=27.5

Q ss_pred             CceecccccccccchhhHHHhHhhhcCCcCce
Q psy12265         18 KPYGCEVCGRHFRQWGDLKYHKASLHSDVKAF   49 (71)
Q Consensus        18 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~   49 (71)
                      +||.|..|++.|...++|..|++ .|++++||
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~-~H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIK-TAFIVVAL   31 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTT-SSSSSSSC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHH-HHccCCCC
Confidence            47899999999999999999987 79988876

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=2.6e-11  Score=47.61  Aligned_cols=32  Identities=19%  Similarity=0.461  Sum_probs=29.1

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      |++ .|+++++|.|..|++.|.....|..|+++
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2yu8_A            3 SGS-SGTGEKPYKCNECGKVFTQNSHLARHRRV   34 (46)
T ss_dssp             CCC-CCCCCSSEECSSSCCEESSSHHHHHHTHH
T ss_pred             cCc-CCCCCCCeECCcCCchhCCHHHHHHHHHh
Confidence            555 79999999999999999999999999875

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.00  E-value=5.7e-11  Score=46.62  Aligned_cols=33  Identities=18%  Similarity=0.448  Sum_probs=29.4

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      |++ .|+++++|.|..|++.|.....|..|++++
T Consensus         3 h~~-~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2el6_A            3 SGS-SGAGVNPYKCSQCEKSFSGKLRLLVHQRMH   35 (46)
T ss_dssp             SCC-SSCCCCSEECSSSSCEESSHHHHHHHHGGG
T ss_pred             CCC-CCCCCCCeECCCCCcccCCHHHHHHHHHHc
Confidence            455 789999999999999999999999998763

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=98.99  E-value=6.7e-10  Score=52.03  Aligned_cols=43  Identities=21%  Similarity=0.282  Sum_probs=38.5

Q ss_pred             CcChHHHHHHHhHhhCCCceecccccccccchhhHHHhHhhhcCCc
Q psy12265          1 MEKFTYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDV   46 (71)
Q Consensus         1 f~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~   46 (71)
                      |.....|..|+++|  ++||.|..|++.|.....|..|++ .|++.
T Consensus        84 f~~~~~l~~H~~~H--~~~~~C~~C~k~f~~~~~l~~H~~-~h~~~  126 (129)
T 2wbt_A           84 FSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVC-KKHNI  126 (129)
T ss_dssp             ESSHHHHHHHHHHT--CCCCBCTTTCCBCSSHHHHHHHHH-HTTCC
T ss_pred             cCCHhHHHHHHHHC--CCCCCCCCCCcccCCHHHHHHHHH-HHCCc
Confidence            56678999999999  899999999999999999999998 67664

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=98.99  E-value=2.5e-11  Score=47.68  Aligned_cols=32  Identities=28%  Similarity=0.592  Sum_probs=29.1

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      |++ .|+++++|.|..|++.|.....|..|+++
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ely_A            3 SGS-SGTGEKPFKCVECGKGFSRRSALNVHHKL   34 (46)
T ss_dssp             CCC-CCCCCCSBCCSSSCCCBSSTTHHHHHHHH
T ss_pred             CCC-CCCCCCCcccCccCcccCCHHHHHHHHHH
Confidence            555 79999999999999999999999999875

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.99  E-value=1.2e-10  Score=43.38  Aligned_cols=30  Identities=13%  Similarity=0.345  Sum_probs=27.3

Q ss_pred             hcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         42 LHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        42 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      .|++++||.|..|++.|.....|..|++++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H   32 (36)
T 2elv_A            3 SGSSGLLYDCHICERKFKNELDRDRHMLVH   32 (36)
T ss_dssp             CSCCCCCEECSSSCCEESSHHHHHHHHTTT
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHHHHh
Confidence            477899999999999999999999999764

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.99  E-value=6e-11  Score=45.19  Aligned_cols=30  Identities=17%  Similarity=0.309  Sum_probs=26.6

Q ss_pred             hcCCcCceeCCh--hhHhhhchHHHHHhhhcC
Q psy12265         42 LHSDVKAFQCEY--CGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        42 ~~~~~~~~~C~~--c~~~f~~~~~l~~h~~~~   71 (71)
                      .+++++||.|..  |++.|...+.|..|++++
T Consensus         3 ~~~gekp~~C~~~~C~k~F~~~~~L~~H~r~H   34 (38)
T 2eln_A            3 SGSSGILLKCPTDGCDYSTPDKYKLQAHLKVH   34 (38)
T ss_dssp             CSSCCCCEECSSSSCCCEESCHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhc
Confidence            467899999986  999999999999999863

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=3.1e-11  Score=47.40  Aligned_cols=32  Identities=25%  Similarity=0.543  Sum_probs=29.1

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      |++ .|+++++|.|..|++.|.....|..|+++
T Consensus         3 h~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2emz_A            3 SGS-SGSGERPFKCNECGKGFGRRSHLAGHLRL   34 (46)
T ss_dssp             CCS-CSSCCCSCCCSSSCCCCSSHHHHHHHHHH
T ss_pred             CCc-CCCCCCCeECCCCCcccCCHHHHHHHHHH
Confidence            555 79999999999999999999999999875

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=3.6e-11  Score=47.22  Aligned_cols=32  Identities=31%  Similarity=0.527  Sum_probs=29.0

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      |++ .|+++++|.|..|++.|.....|..|+++
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2em2_A            3 SGS-SGSGEKPFKCKECGKAFRQNIHLASHLRI   34 (46)
T ss_dssp             CCC-SCCCCCSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCC-CCCCCCCEECCcCCchhCCHHHHHHHHHH
Confidence            555 79999999999999999999999999875

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=3.9e-11  Score=47.11  Aligned_cols=32  Identities=22%  Similarity=0.408  Sum_probs=29.0

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      |++ .|+++++|.|..|++.|.....|..|+++
T Consensus         3 h~~-~H~~~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2en9_A            3 SGS-SGAGKKLFKCNECKKTFTQSSSLTVHQRI   34 (46)
T ss_dssp             CCS-SCCSSCCCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCC-CCCCCCCEECCccCcccCCHHHHHHHHHH
Confidence            555 79999999999999999999999999875

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=3.7e-11  Score=47.21  Aligned_cols=32  Identities=19%  Similarity=0.458  Sum_probs=28.9

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      |++ .|+++++|.|..|++.|.....|..|+++
T Consensus         3 h~~-~h~~~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytm_A            3 SGS-SGTGEKPYKCMECGKAFGDNSSCTQHQRL   34 (46)
T ss_dssp             SCC-CCSSCCSSSBTTTTBCCSSHHHHHHHHHH
T ss_pred             CCc-CCCCCCCcCCCCCCchhCCHHHHHHHHHH
Confidence            455 78999999999999999999999999875

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=2.5e-11  Score=47.23  Aligned_cols=32  Identities=28%  Similarity=0.642  Sum_probs=29.0

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      |++ .|++++||.|..|++.|.....|..|+++
T Consensus         3 H~~-~H~~~~~~~C~~C~k~F~~~~~L~~H~~~   34 (44)
T 2eox_A            3 SGS-SGTDSKSYNCNECGKAFTRIFHLTRHQKI   34 (44)
T ss_dssp             CCC-CCCCCCCEEETTTTEEESSSHHHHTTHHH
T ss_pred             CCc-CCCCCCCeECcccCcccCCHHHHHHHHHH
Confidence            555 78999999999999999999999999875

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=3.8e-11  Score=47.11  Aligned_cols=32  Identities=25%  Similarity=0.480  Sum_probs=29.1

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      |++ .|+++++|.|..|++.|.....|..|+++
T Consensus         3 H~~-~H~~~~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytk_A            3 SGS-SGSGEKPYKCNECGKVFTQNSHLTNHWRI   34 (46)
T ss_dssp             CCC-CSSSSCSEECSSSCCEESSHHHHHHHHHH
T ss_pred             Ccc-cCCCCCCEeCCcCCCccCCHHHHHHHHHH
Confidence            565 79999999999999999999999999875

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.98  E-value=1.2e-10  Score=43.38  Aligned_cols=30  Identities=20%  Similarity=0.255  Sum_probs=27.3

Q ss_pred             hcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         42 LHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        42 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      .|++++||.|..|++.|.....|..|++++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H   32 (36)
T 2elq_A            3 SGSSGKPFKCSLCEYATRSKSNLKAHMNRH   32 (36)
T ss_dssp             SSCCCCSEECSSSSCEESCHHHHHHHHHHS
T ss_pred             CCCCCCCccCCCCCchhCCHHHHHHHHHHh
Confidence            578899999999999999999999998763

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.98  E-value=1.6e-10  Score=44.21  Aligned_cols=30  Identities=27%  Similarity=0.513  Sum_probs=27.7

Q ss_pred             hcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         42 LHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        42 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      .|+++++|.|..|++.|.....|..|++++
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H   33 (41)
T 2ept_A            4 GSSGQRVYECQECGKSFRQKGSLTLHERIH   33 (41)
T ss_dssp             SCCCCCCEECSSSCCEESSHHHHHHHGGGC
T ss_pred             ccCCCCCeECCCCCCCcCCHHHHHHHHHHh
Confidence            688999999999999999999999998764

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.98  E-value=4.5e-11  Score=46.89  Aligned_cols=32  Identities=22%  Similarity=0.295  Sum_probs=28.9

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      |++ .|+++++|.|..|++.|.....|..|+++
T Consensus         3 H~~-~H~~~~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2yso_A            3 SGS-SGSREKSHQCRECGEIFFQYVSLIEHQVL   34 (46)
T ss_dssp             CSC-CSSCCCCEECTTTCCEESSHHHHHHHHHH
T ss_pred             ccc-ccCCCCCEEccccChhhCCHHHHHHHHHH
Confidence            555 78999999999999999999999999875

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.97  E-value=1.6e-10  Score=43.76  Aligned_cols=29  Identities=10%  Similarity=0.432  Sum_probs=25.7

Q ss_pred             cCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         43 HSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        43 ~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      |+++++|.|..|++.|...+.|..|++++
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H   29 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVH   29 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTT
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHc
Confidence            46789999999999999999999998764

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=4.7e-11  Score=46.83  Aligned_cols=32  Identities=25%  Similarity=0.458  Sum_probs=29.0

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      |++ .|+++++|.|..|++.|.....|..|+++
T Consensus         3 h~~-~H~~~~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2en6_A            3 SGS-SGSGEKPYGCNECGKTFSQKSILSAHQRT   34 (46)
T ss_dssp             CSC-CCCSSCCEEETTTTEEESSHHHHHHHHHH
T ss_pred             CCC-ccCCCcCeECCCCCcccCchHHHHHHHHH
Confidence            555 79999999999999999999999999875

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=4.8e-11  Score=46.80  Aligned_cols=32  Identities=28%  Similarity=0.539  Sum_probs=29.1

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      |++ .|+++++|.|..|++.|.....|..|+++
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytd_A            3 SGS-SGSGEKPYKCSECGKAFHRHTHLNEHRRI   34 (46)
T ss_dssp             CCC-CSCCCCSEECSSSCCEESSHHHHHHHHHH
T ss_pred             Ccc-ccCCCcCeECCCCCCeeCChHHHHHHHHH
Confidence            555 78999999999999999999999999875

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=5e-11  Score=46.78  Aligned_cols=32  Identities=22%  Similarity=0.502  Sum_probs=28.8

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      |++ .|+++++|.|..|++.|.....|..|+++
T Consensus         3 h~~-~h~~~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2em8_A            3 SGS-SGSGEKPYKCVECGKGYKRRLDLDFHQRV   34 (46)
T ss_dssp             CCC-CCCSCCSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCC-CCCCCCCeECcccCchhCCHHHHHHHHHH
Confidence            455 78999999999999999999999999875

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.96  E-value=9.5e-11  Score=43.55  Aligned_cols=29  Identities=21%  Similarity=0.209  Sum_probs=26.8

Q ss_pred             hcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265         42 LHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        42 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      .|++++||.|..|++.|.....|..|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2elt_A            3 SGSSGKPYKCPQCSYASAIKANLNVHLRK   31 (36)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCcccCCHHHHHHHHHH
Confidence            57889999999999999999999999875

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.95  E-value=1.8e-11  Score=52.15  Aligned_cols=37  Identities=22%  Similarity=0.102  Sum_probs=34.7

Q ss_pred             CCceecccccccccchhhHHHhHhhhcCCcCceeCChh
Q psy12265         17 LKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYC   54 (71)
Q Consensus        17 ~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c   54 (71)
                      +++|.|..|++.|.....|..|++ .|+++++|.|.+|
T Consensus        37 ~~~~~C~~C~~~f~~~~~l~~H~~-~H~~~~~~~C~~C   73 (73)
T 2ctu_A           37 RKTPMCEKCRKDSCQEAALNKDEG-NESGKKTSGPSSG   73 (73)
T ss_dssp             SSSCCCHHHHHTCSCCCSSCCCSS-CCCCCCCSSCCCC
T ss_pred             CCCCCCCCCChhhcCHHHHHHHHH-hhcCCCCCCCCCC
Confidence            678999999999999999999998 7999999999987

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.95  E-value=6.1e-11  Score=46.11  Aligned_cols=32  Identities=16%  Similarity=0.262  Sum_probs=28.6

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      |++ .|+++++|.|..|++.|.....|..|+++
T Consensus         3 h~~-~h~~~~~~~C~~C~k~f~~~~~L~~H~~~   34 (44)
T 2eou_A            3 SGS-SGAAKTTSECQECGKIFRHSSLLIEHQAL   34 (44)
T ss_dssp             CSC-SCSSSCCCCCTTTCCCCSSHHHHHHHHHH
T ss_pred             CCC-CCCCCcCeECCCCCcccCCHHHHHHHHHH
Confidence            444 68899999999999999999999999875

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.92  E-value=1.3e-10  Score=43.45  Aligned_cols=29  Identities=21%  Similarity=0.336  Sum_probs=26.8

Q ss_pred             hcCCcCceeCChhhHhhhch-HHHHHhhhc
Q psy12265         42 LHSDVKAFQCEYCGKDFARK-YQAHSYHQI   70 (71)
Q Consensus        42 ~~~~~~~~~C~~c~~~f~~~-~~l~~h~~~   70 (71)
                      .|++++||.|..|++.|... ..|..|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~   32 (37)
T 2elp_A            3 SGSSGRAMKCPYCDFYFMKNGSDLQRHIWA   32 (37)
T ss_dssp             SCCCCCCEECSSSSCEECSSCHHHHHHHHH
T ss_pred             CCCCCCCeECCCCChhhccCHHHHHHHHHh
Confidence            57889999999999999999 999999875

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=2.8e-10  Score=44.38  Aligned_cols=30  Identities=30%  Similarity=0.544  Sum_probs=27.7

Q ss_pred             hcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         42 LHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        42 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      .|+++++|.|..|++.|.....|..|++++
T Consensus         6 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H   35 (45)
T 2epu_A            6 SGTGQKPFECTHCGKSFRAKGNLVTHQRIH   35 (45)
T ss_dssp             CCCSCCSEEETTTTEEESSHHHHHHHHTTT
T ss_pred             CCCCCcCccCCCCCCccCChHHHHHHHHHh
Confidence            688999999999999999999999998764

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.92  E-value=2.6e-10  Score=39.88  Aligned_cols=24  Identities=8%  Similarity=0.252  Sum_probs=12.2

Q ss_pred             CceeCChhhHhhhchHHHHHhhhc
Q psy12265         47 KAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        47 ~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      +||.|..|++.|...+.|..|+++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~   25 (27)
T 2kvg_A            2 APYRCPLCRAGCPSLASMQAHMRG   25 (27)
T ss_dssp             CTEEETTTTEEESCHHHHHHHHTT
T ss_pred             cCcCCCCCCcccCCHHHHHHHHHh
Confidence            345555555555555555555443

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.91  E-value=7.9e-11  Score=46.54  Aligned_cols=37  Identities=16%  Similarity=0.303  Sum_probs=27.0

Q ss_pred             HHHhHhhCCCceecc--cccccccchhhHHHhHhhhcCCc
Q psy12265          9 VHNRVHLGLKPYGCE--VCGRHFRQWGDLKYHKASLHSDV   46 (71)
Q Consensus         9 ~h~~~~~~~~~~~c~--~c~~~~~~~~~l~~h~~~~~~~~   46 (71)
                      .+...|.+++||.|.  .|++.|...+.|..|++ .|+++
T Consensus         8 ~~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~-~H~~e   46 (47)
T 1ncs_A            8 DKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQ-THLED   46 (47)
T ss_dssp             GGSCEEETTTEEECCCTTCCCEECSSSSHHHHHH-HHTTT
T ss_pred             HHHhccCCCCCeECCCCCCCCccCCHHHHHHHHH-HccCC
Confidence            344557778888885  68888888888888876 67665

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.90  E-value=2e-10  Score=42.65  Aligned_cols=29  Identities=31%  Similarity=0.468  Sum_probs=26.7

Q ss_pred             hcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265         42 LHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        42 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      .|+++++|.|..|++.|.....|..|+++
T Consensus         3 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2elr_A            3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLL   31 (36)
T ss_dssp             CCCCCSSCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCCCCCCeecCcCCCCcCchHHHHHHHHH
Confidence            47789999999999999999999999875

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.90  E-value=1.9e-09  Score=38.08  Aligned_cols=29  Identities=34%  Similarity=0.679  Sum_probs=23.8

Q ss_pred             CCceecccccccccchhhHHHhHhhhcCCc
Q psy12265         17 LKPYGCEVCGRHFRQWGDLKYHKASLHSDV   46 (71)
Q Consensus        17 ~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~   46 (71)
                      ++||.|..|++.|.....|..|++ .|+++
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~-~h~~~   29 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLE-THDTD   29 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHH-TTCCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHH-HhccC
Confidence            468889999999988888888887 67765

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=2.5e-10  Score=44.69  Aligned_cols=30  Identities=20%  Similarity=0.419  Sum_probs=27.7

Q ss_pred             hcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         42 LHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        42 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      .|+++++|.|..|++.|.....|..|++++
T Consensus         6 ~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2ep0_A            6 SGTGEKPYKCDVCHKSFRYGSSLTVHQRIH   35 (46)
T ss_dssp             SSTTCCSEECSSSCCEESSHHHHHHHHTTT
T ss_pred             CCCCCCCeeCcccCcccCChHHHHHHHHHh
Confidence            688999999999999999999999998763

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.89  E-value=3.6e-10  Score=39.39  Aligned_cols=23  Identities=26%  Similarity=0.759  Sum_probs=11.5

Q ss_pred             CceecccccccccchhhHHHhHh
Q psy12265         18 KPYGCEVCGRHFRQWGDLKYHKA   40 (71)
Q Consensus        18 ~~~~c~~c~~~~~~~~~l~~h~~   40 (71)
                      +||.|..|++.|...+.|..|++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~   24 (27)
T 2kvh_A            2 KPFSCSLCPQRSRDFSAMTKHLR   24 (27)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHH
T ss_pred             cCccCCCcChhhCCHHHHHHHHH
Confidence            34555555555555555555543

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.89  E-value=2.9e-10  Score=42.24  Aligned_cols=29  Identities=38%  Similarity=0.546  Sum_probs=26.4

Q ss_pred             hcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265         42 LHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        42 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      .+.++++|.|..|++.|.....|..|+++
T Consensus         3 ~~~~~k~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2els_A            3 SGSSGKIFTCEYCNKVFKFKHSLQAHLRI   31 (36)
T ss_dssp             TTSCCCCEECTTTCCEESSHHHHHHHHHH
T ss_pred             CCCCCCCEECCCCCceeCCHHHHHHHHHH
Confidence            46788999999999999999999999875

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.88  E-value=1e-09  Score=41.03  Aligned_cols=32  Identities=22%  Similarity=0.321  Sum_probs=24.0

Q ss_pred             hhCCCceecc--cccccccchhhHHHhHhhhcCCc
Q psy12265         14 HLGLKPYGCE--VCGRHFRQWGDLKYHKASLHSDV   46 (71)
Q Consensus        14 ~~~~~~~~c~--~c~~~~~~~~~l~~h~~~~~~~~   46 (71)
                      |.+++||.|.  .|++.|...+.|..|++ .|+++
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~-~H~~e   36 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLR-WHTGE   36 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHH-HHHTT
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHH-hcCCC
Confidence            4567788887  48888888888888876 57654

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.84  E-value=2.7e-09  Score=37.49  Aligned_cols=28  Identities=25%  Similarity=0.556  Sum_probs=22.9

Q ss_pred             CceecccccccccchhhHHHhHhhhcCCc
Q psy12265         18 KPYGCEVCGRHFRQWGDLKYHKASLHSDV   46 (71)
Q Consensus        18 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~   46 (71)
                      +||.|..|++.|.....|..|++ .|+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~-~H~~~   28 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHIL-LHENK   28 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHT-GGGSC
T ss_pred             CCccCCCCCchhCCHHHHHHHHH-HhcCC
Confidence            47888889999988888888887 67665

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.84  E-value=4.4e-10  Score=43.44  Aligned_cols=29  Identities=21%  Similarity=0.235  Sum_probs=27.0

Q ss_pred             hcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265         42 LHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        42 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      .|+++++|.|..|++.|.....|..|+++
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~   32 (43)
T 2yrm_A            4 GSSGNGAFFCNECDCRFSEEASLKRHTLQ   32 (43)
T ss_dssp             CCSSSCCBCCSSSCCCBSSHHHHHHHHHH
T ss_pred             CcCCCCCEECCCCCCeeCChHHHHHHHHh
Confidence            58899999999999999999999999875

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.83  E-value=4.2e-10  Score=44.09  Aligned_cols=29  Identities=21%  Similarity=0.347  Sum_probs=27.1

Q ss_pred             hcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265         42 LHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        42 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      .|+++++|.|..|++.|.....|..|+++
T Consensus         6 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2eom_A            6 SGHGERGHRCSDCGKFFLQASNFIQHRRI   34 (46)
T ss_dssp             CCCCCSSCCCSSSCCCCSSHHHHHHHHHH
T ss_pred             CCCCCCCcCCCCCCCeeCChHHHHHHHHH
Confidence            68899999999999999999999999875

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.83  E-value=4.2e-10  Score=43.84  Aligned_cols=29  Identities=28%  Similarity=0.416  Sum_probs=27.1

Q ss_pred             hcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265         42 LHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        42 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      .|+++++|.|..|++.|.....|..|+++
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~   32 (45)
T 2epq_A            4 GSSGEKPYSCPVCGLRFKRKDRMSYHVRS   32 (45)
T ss_dssp             CCSSCCSSEETTTTEECSCHHHHHHHHHH
T ss_pred             CcCCCCCCcCCCCCcccCCHHHHHHHHHH
Confidence            58899999999999999999999999875

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.83  E-value=8.5e-10  Score=38.63  Aligned_cols=22  Identities=36%  Similarity=0.942  Sum_probs=11.2

Q ss_pred             CceecccccccccchhhHHHhH
Q psy12265         18 KPYGCEVCGRHFRQWGDLKYHK   39 (71)
Q Consensus        18 ~~~~c~~c~~~~~~~~~l~~h~   39 (71)
                      +||.|..|++.|.....|..|+
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~   23 (28)
T 2kvf_A            2 RPYSCSVCGKRFSLKHQMETHY   23 (28)
T ss_dssp             CSEECSSSCCEESCHHHHHHHH
T ss_pred             cCccCCCCCcccCCHHHHHHHH
Confidence            3455555555555555555544

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.82  E-value=2.7e-09  Score=45.16  Aligned_cols=33  Identities=24%  Similarity=0.412  Sum_probs=29.5

Q ss_pred             hhCCCceecccccccccchhhHHHhHhhhcCCcC
Q psy12265         14 HLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVK   47 (71)
Q Consensus        14 ~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~   47 (71)
                      +.+++||.|..|++.|.....|..|++ .|+++.
T Consensus         8 ~~~ekpy~C~~CgK~F~~~s~L~~H~r-~Htg~~   40 (66)
T 2epp_A            8 LREAGILPCGLCGKVFTDANRLRQHEA-QHGVTS   40 (66)
T ss_dssp             CCCCCCCCCTTTCCCCSCHHHHHHHHH-HHTTTS
T ss_pred             CCCccCcCCCCCCCccCCHHHHHhhhh-hhCCCc
Confidence            567899999999999999999999998 788764

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.82  E-value=4.4e-09  Score=36.70  Aligned_cols=26  Identities=27%  Similarity=0.681  Sum_probs=23.4

Q ss_pred             cCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         46 VKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        46 ~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      ++||.|..|++.|.....|..|++++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h   26 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVH   26 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTS
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhc
Confidence            46899999999999999999998764

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=98.31  E-value=4.5e-10  Score=38.79  Aligned_cols=23  Identities=30%  Similarity=0.602  Sum_probs=15.9

Q ss_pred             ceeCChhhHhhhchHHHHHhhhc
Q psy12265         48 AFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        48 ~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      ||.|..|++.|.....|..|+++
T Consensus         2 p~~C~~C~k~f~~~~~l~~H~~~   24 (26)
T 2lvu_A            2 PYVCERCGKRFVQSSQLANHIRH   24 (26)
Confidence            56677777777777777777654

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.81  E-value=4.9e-09  Score=36.33  Aligned_cols=26  Identities=15%  Similarity=0.245  Sum_probs=23.5

Q ss_pred             cCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         46 VKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        46 ~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      ++||.|..|++.|.....|..|++++
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTH   26 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHc
Confidence            46899999999999999999999764

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.81  E-value=5.3e-09  Score=37.64  Aligned_cols=29  Identities=34%  Similarity=0.680  Sum_probs=24.2

Q ss_pred             CCceecc--cccccccchhhHHHhHhhhcCCc
Q psy12265         17 LKPYGCE--VCGRHFRQWGDLKYHKASLHSDV   46 (71)
Q Consensus        17 ~~~~~c~--~c~~~~~~~~~l~~h~~~~~~~~   46 (71)
                      ++||.|.  .|++.|.....|..|++ .|+++
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~-~H~~~   31 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKK-SHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHG-GGTCC
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHH-HccCC
Confidence            4688898  89999999999999987 68765

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=5.2e-10  Score=43.77  Aligned_cols=29  Identities=28%  Similarity=0.537  Sum_probs=27.2

Q ss_pred             hcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265         42 LHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        42 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      .|+++++|.|..|++.|.....|..|+++
T Consensus         6 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytt_A            6 SGEGEKPYQCSECGKSFSGSYRLTQHWIT   34 (46)
T ss_dssp             SCSCCCTTCCSSSCCCCSSHHHHHHHHTH
T ss_pred             CCCCCCCeeCCCCCcccCCHHHHHHHHHH
Confidence            68899999999999999999999999875

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.80  E-value=4.3e-09  Score=36.91  Aligned_cols=28  Identities=36%  Similarity=0.678  Sum_probs=22.8

Q ss_pred             CceecccccccccchhhHHHhHhhhcCCc
Q psy12265         18 KPYGCEVCGRHFRQWGDLKYHKASLHSDV   46 (71)
Q Consensus        18 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~   46 (71)
                      +||.|..|++.|.....|..|++ .|+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~-~h~~~   28 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYR-SHTNE   28 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHH-HHSCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHH-HhcCC
Confidence            47888889999988888888887 67664

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.79  E-value=4.1e-09  Score=36.63  Aligned_cols=26  Identities=23%  Similarity=0.521  Sum_probs=23.5

Q ss_pred             CCceecccccccccchhhHHHhHhhhc
Q psy12265         17 LKPYGCEVCGRHFRQWGDLKYHKASLH   43 (71)
Q Consensus        17 ~~~~~c~~c~~~~~~~~~l~~h~~~~~   43 (71)
                      ++||.|..|++.|...+.|..|++ .|
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~-~H   26 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMR-GH   26 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHT-TC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHH-hc
Confidence            478999999999999999999987 55

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.78  E-value=6.5e-09  Score=37.16  Aligned_cols=28  Identities=32%  Similarity=0.810  Sum_probs=23.1

Q ss_pred             Cceecc--cccccccchhhHHHhHhhhcCCc
Q psy12265         18 KPYGCE--VCGRHFRQWGDLKYHKASLHSDV   46 (71)
Q Consensus        18 ~~~~c~--~c~~~~~~~~~l~~h~~~~~~~~   46 (71)
                      +||.|.  .|++.|...+.|..|++ .|+++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~-~H~~~   30 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKR-THTGE   30 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHT-TTSCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHH-HhcCC
Confidence            478887  89999999999999987 68765

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.77  E-value=5.5e-09  Score=36.82  Aligned_cols=29  Identities=24%  Similarity=0.403  Sum_probs=23.9

Q ss_pred             CceecccccccccchhhHHHhHhhhcCCcC
Q psy12265         18 KPYGCEVCGRHFRQWGDLKYHKASLHSDVK   47 (71)
Q Consensus        18 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~   47 (71)
                      +||.|..|++.|...+.|..|++ .|.+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~-~h~~~~   29 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIK-TKHSKE   29 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHH-HHTSSC
T ss_pred             CCccCCCCCCccCCHHHHHHHHH-HHccCC
Confidence            47889999999999999999987 676654

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.77  E-value=9.8e-10  Score=46.51  Aligned_cols=30  Identities=17%  Similarity=0.319  Sum_probs=26.9

Q ss_pred             hcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         42 LHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        42 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      .+.+++||.|..|++.|.....|..|++++
T Consensus         7 ~~~~ekpy~C~~CgK~F~~~s~L~~H~r~H   36 (66)
T 2epp_A            7 GLREAGILPCGLCGKVFTDANRLRQHEAQH   36 (66)
T ss_dssp             SCCCCCCCCCTTTCCCCSCHHHHHHHHHHH
T ss_pred             CCCCccCcCCCCCCCccCCHHHHHhhhhhh
Confidence            366789999999999999999999999863

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.76  E-value=4.4e-09  Score=36.83  Aligned_cols=28  Identities=39%  Similarity=0.804  Sum_probs=22.2

Q ss_pred             CceecccccccccchhhHHHhHhhhcCCc
Q psy12265         18 KPYGCEVCGRHFRQWGDLKYHKASLHSDV   46 (71)
Q Consensus        18 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~   46 (71)
                      +||.|..|++.|.....|..|++ .|+++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~-~H~~~   28 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLR-IHSGE   28 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHH-HHHTC
T ss_pred             CCccCCCCCCccCChhHHHHHHH-HhcCC
Confidence            47888888888888888888877 67654

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.76  E-value=4.4e-09  Score=42.50  Aligned_cols=31  Identities=23%  Similarity=0.276  Sum_probs=27.7

Q ss_pred             CcChHHHHHHHh-HhhCCCceecccccccccc
Q psy12265          1 MEKFTYLKVHNR-VHLGLKPYGCEVCGRHFRQ   31 (71)
Q Consensus         1 f~~~~~l~~h~~-~~~~~~~~~c~~c~~~~~~   31 (71)
                      |.....|..|++ +|.+++||.|..|++.|.+
T Consensus        22 f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A           22 FSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             ESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             cCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            567789999987 9999999999999999975

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.75  E-value=1.4e-09  Score=40.75  Aligned_cols=28  Identities=29%  Similarity=0.481  Sum_probs=25.3

Q ss_pred             cCCcCceeCC--hhhHhhhchHHHHHhhhc
Q psy12265         43 HSDVKAFQCE--YCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        43 ~~~~~~~~C~--~c~~~f~~~~~l~~h~~~   70 (71)
                      |+++++|.|.  .|++.|...+.|..|+++
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~   30 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHK   30 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHH
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHH
Confidence            5678999999  599999999999999875

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.75  E-value=2.3e-09  Score=37.87  Aligned_cols=26  Identities=27%  Similarity=0.736  Sum_probs=23.4

Q ss_pred             cCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         46 VKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        46 ~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      ++||.|..|++.|.....|..|++++
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h   26 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETH   26 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTT
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHh
Confidence            46899999999999999999998763

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.75  E-value=1.5e-09  Score=40.62  Aligned_cols=29  Identities=17%  Similarity=0.291  Sum_probs=26.0

Q ss_pred             hcCCcCceeCC--hhhHhhhchHHHHHhhhc
Q psy12265         42 LHSDVKAFQCE--YCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        42 ~~~~~~~~~C~--~c~~~f~~~~~l~~h~~~   70 (71)
                      .++++++|.|.  .|++.|...+.|..|+++
T Consensus         2 ~~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~   32 (37)
T 1va1_A            2 DPGKKKQHICHIQGCGKVYGKTSHLRAHLRW   32 (37)
T ss_dssp             CSSSCCCEECCSTTCCCEESCHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHh
Confidence            37789999998  499999999999999875

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.73  E-value=5.3e-09  Score=36.57  Aligned_cols=28  Identities=36%  Similarity=0.617  Sum_probs=22.6

Q ss_pred             CceecccccccccchhhHHHhHhhhcCCc
Q psy12265         18 KPYGCEVCGRHFRQWGDLKYHKASLHSDV   46 (71)
Q Consensus        18 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~   46 (71)
                      +||.|..|++.|.....|..|++ .|+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~-~h~~~   28 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLK-IHIAD   28 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHH-HHHSC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHH-HhccC
Confidence            47888889988888888888887 67654

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.72  E-value=1e-08  Score=35.36  Aligned_cols=26  Identities=31%  Similarity=0.745  Sum_probs=19.1

Q ss_pred             ceecccccccccchhhHHHhHhhhcCC
Q psy12265         19 PYGCEVCGRHFRQWGDLKYHKASLHSD   45 (71)
Q Consensus        19 ~~~c~~c~~~~~~~~~l~~h~~~~~~~   45 (71)
                      ||.|..|++.|.....|..|++ .|++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~-~h~~   26 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQR-VHKN   26 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGG-GTCC
T ss_pred             CccCCCCCCcCCCHHHHHHHHH-HcCC
Confidence            4778888888888888888876 5654

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=98.18  E-value=1.4e-09  Score=38.53  Aligned_cols=28  Identities=39%  Similarity=0.750  Sum_probs=18.7

Q ss_pred             CceecccccccccchhhHHHhHhhhcCCc
Q psy12265         18 KPYGCEVCGRHFRQWGDLKYHKASLHSDV   46 (71)
Q Consensus        18 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~   46 (71)
                      +||.|..|++.|.....|..|++ .|+++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~-~h~~~   29 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVR-IHTGE   29 (30)
Confidence            46777777777777777777765 55543

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.71  E-value=9.7e-09  Score=36.25  Aligned_cols=28  Identities=36%  Similarity=0.703  Sum_probs=22.0

Q ss_pred             CceecccccccccchhhHHHh-HhhhcCCc
Q psy12265         18 KPYGCEVCGRHFRQWGDLKYH-KASLHSDV   46 (71)
Q Consensus        18 ~~~~c~~c~~~~~~~~~l~~h-~~~~~~~~   46 (71)
                      +||.|..|++.|...+.|..| ++ .|+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~-~H~~~   29 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQK-IHSGN   29 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTT-TSCCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHH-HccCC
Confidence            478888888888888888888 45 67665

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=98.18  E-value=1.5e-09  Score=38.29  Aligned_cols=28  Identities=36%  Similarity=0.653  Sum_probs=18.7

Q ss_pred             CceecccccccccchhhHHHhHhhhcCCc
Q psy12265         18 KPYGCEVCGRHFRQWGDLKYHKASLHSDV   46 (71)
Q Consensus        18 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~   46 (71)
                      +||.|..|++.|...++|..|++ .|+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~-~H~~~   28 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVR-QHTGE   28 (29)
Confidence            35677777777777777777765 56543

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.70  E-value=2.8e-10  Score=44.92  Aligned_cols=29  Identities=34%  Similarity=0.533  Sum_probs=26.6

Q ss_pred             hcCCcCceeCC--hhhHhhhchHHHHHhhhc
Q psy12265         42 LHSDVKAFQCE--YCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        42 ~~~~~~~~~C~--~c~~~f~~~~~l~~h~~~   70 (71)
                      .|++++||.|.  .|++.|...+.|..|+++
T Consensus        12 ~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~   42 (47)
T 1ncs_A           12 KEMPDKTFECLFPGCTKTFKRRYNIRSHIQT   42 (47)
T ss_dssp             EEETTTEEECCCTTCCCEECSSSSHHHHHHH
T ss_pred             ccCCCCCeECCCCCCCCccCCHHHHHHHHHH
Confidence            68899999995  799999999999999875

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.70  E-value=3.7e-09  Score=45.12  Aligned_cols=28  Identities=18%  Similarity=0.205  Sum_probs=25.1

Q ss_pred             hcCCcCceeCCh--hhHhhhchHHHHHhhh
Q psy12265         42 LHSDVKAFQCEY--CGKDFARKYQAHSYHQ   69 (71)
Q Consensus        42 ~~~~~~~~~C~~--c~~~f~~~~~l~~h~~   69 (71)
                      ..++++||.|..  |++.|...+.|..|++
T Consensus        21 ~~sGEKPYkC~~~~CgKaFsr~s~L~~H~r   50 (73)
T 1x3c_A           21 RYSPYRPYRCVHQGCFAAFTIQQNLILHYQ   50 (73)
T ss_dssp             SSCSSCSCBCCSTTCCCBCSSHHHHHHHHH
T ss_pred             cccCCCCeECCCCCcChhHcCHHHHHHHhh
Confidence            478999999975  9999999999999973

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=98.16  E-value=1.7e-09  Score=38.26  Aligned_cols=26  Identities=23%  Similarity=0.455  Sum_probs=23.0

Q ss_pred             cCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         46 VKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        46 ~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      ++||.|..|++.|.....|..|++++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h   26 (30)
T 2lvr_A            1 MKPYVCIHCQRQFADPGALQRHVRIH   26 (30)
Confidence            36899999999999999999998753

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.69  E-value=5.8e-09  Score=41.09  Aligned_cols=30  Identities=27%  Similarity=0.422  Sum_probs=27.0

Q ss_pred             hcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         42 LHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        42 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      .+.++++|.|.+|++.|.....|..|++++
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (48)
T 2epr_A            6 SGRTRKQVACEICGKIFRDVYHLNRHKLSH   35 (48)
T ss_dssp             CCCCCCSEEETTTTEEESSHHHHHHHGGGS
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHhc
Confidence            467789999999999999999999999864

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.69  E-value=1.2e-09  Score=39.65  Aligned_cols=25  Identities=28%  Similarity=0.420  Sum_probs=22.6

Q ss_pred             CceeCChhhHhhhchHHHHHhhhcC
Q psy12265         47 KAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        47 ~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      +||.|..|++.|...+.|..|++++
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H   25 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTA   25 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSS
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHH
Confidence            4799999999999999999998764

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=98.14  E-value=2e-09  Score=37.94  Aligned_cols=25  Identities=28%  Similarity=0.487  Sum_probs=22.4

Q ss_pred             CceeCChhhHhhhchHHHHHhhhcC
Q psy12265         47 KAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        47 ~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      +||.|..|++.|.....|..|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H   25 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQH   25 (29)
Confidence            4799999999999999999998753

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.68  E-value=3.1e-09  Score=37.31  Aligned_cols=25  Identities=24%  Similarity=0.384  Sum_probs=22.6

Q ss_pred             CceeCChhhHhhhchHHHHHhhhcC
Q psy12265         47 KAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        47 ~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      +||.|..|++.|.....|..|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H   25 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLH   25 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGG
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHh
Confidence            4799999999999999999998763

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.67  E-value=4.7e-09  Score=36.27  Aligned_cols=24  Identities=17%  Similarity=0.581  Sum_probs=21.3

Q ss_pred             ceeCChhhHhhhchHHHHHhhhcC
Q psy12265         48 AFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        48 ~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      ||.|..|++.|.....|..|++++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h   24 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVH   24 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGT
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHc
Confidence            589999999999999999999864

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=4.2e-09  Score=41.33  Aligned_cols=30  Identities=23%  Similarity=0.413  Sum_probs=27.4

Q ss_pred             hcCCcCceeCC--hhhHhhhchHHHHHhhhcC
Q psy12265         42 LHSDVKAFQCE--YCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        42 ~~~~~~~~~C~--~c~~~f~~~~~l~~h~~~~   71 (71)
                      .|+++++|.|.  .|++.|.....|..|++++
T Consensus         6 ~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H   37 (48)
T 2ent_A            6 SGTGEKPFACTWPGCGWRFSRSDELSRHRRSH   37 (48)
T ss_dssp             SSCCCCCEECCSSSCCCEESSHHHHHHHHTTS
T ss_pred             CcCCCCCeECCCCCCCCccCCHHHHHHHHHHh
Confidence            68899999998  8999999999999998763

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.65  E-value=2.5e-09  Score=39.04  Aligned_cols=24  Identities=25%  Similarity=0.445  Sum_probs=22.1

Q ss_pred             CceeCChhhHhhhchHHHHHhhhc
Q psy12265         47 KAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        47 ~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      +||.|..|++.|.....|..|+++
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~   24 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITL   24 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHH
T ss_pred             CcccCCCCCchhCCHHHHHHHHHH
Confidence            479999999999999999999875

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.62  E-value=4.2e-09  Score=36.94  Aligned_cols=24  Identities=29%  Similarity=0.621  Sum_probs=22.0

Q ss_pred             CceeCChhhHhhhchHHHHHhhhc
Q psy12265         47 KAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        47 ~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      +||.|..|++.|.....|..|+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~   24 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRS   24 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCeECCCCCcccCCHHHHHHHHHH
Confidence            479999999999999999999875

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.59  E-value=9.6e-09  Score=36.92  Aligned_cols=26  Identities=19%  Similarity=0.469  Sum_probs=23.2

Q ss_pred             cCceeCC--hhhHhhhchHHHHHhhhcC
Q psy12265         46 VKAFQCE--YCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        46 ~~~~~C~--~c~~~f~~~~~l~~h~~~~   71 (71)
                      ++||.|.  .|++.|.....|..|++++
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H   28 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSH   28 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGG
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHc
Confidence            4689999  8999999999999999863

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.57  E-value=1.3e-08  Score=36.36  Aligned_cols=25  Identities=32%  Similarity=0.802  Sum_probs=22.4

Q ss_pred             CceeCC--hhhHhhhchHHHHHhhhcC
Q psy12265         47 KAFQCE--YCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        47 ~~~~C~--~c~~~f~~~~~l~~h~~~~   71 (71)
                      +||.|.  .|++.|...+.|..|++++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H   27 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTH   27 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTT
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHh
Confidence            478998  9999999999999999864

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.57  E-value=7.4e-09  Score=36.21  Aligned_cols=24  Identities=25%  Similarity=0.541  Sum_probs=21.9

Q ss_pred             CceeCChhhHhhhchHHHHHhhhc
Q psy12265         47 KAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        47 ~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      +||.|..|++.|.....|..|+++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~   24 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRI   24 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHH
T ss_pred             CCccCCCCCCccCChhHHHHHHHH
Confidence            479999999999999999999875

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.97  E-value=8e-09  Score=35.44  Aligned_cols=25  Identities=48%  Similarity=0.867  Sum_probs=22.3

Q ss_pred             CceecccccccccchhhHHHhHhhhc
Q psy12265         18 KPYGCEVCGRHFRQWGDLKYHKASLH   43 (71)
Q Consensus        18 ~~~~c~~c~~~~~~~~~l~~h~~~~~   43 (71)
                      +||.|..|++.|...+.|..|++ .|
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~-~H   25 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIR-HH   25 (26)
Confidence            58999999999999999999986 45

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.55  E-value=1.4e-08  Score=35.78  Aligned_cols=24  Identities=29%  Similarity=0.653  Sum_probs=21.5

Q ss_pred             CceeCChhhHhhhchHHHHHh-hhc
Q psy12265         47 KAFQCEYCGKDFARKYQAHSY-HQI   70 (71)
Q Consensus        47 ~~~~C~~c~~~f~~~~~l~~h-~~~   70 (71)
                      +||.|..|++.|.....|..| +++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~   25 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKI   25 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTT
T ss_pred             CCcCCcccCcccCChHHHHHHHHHH
Confidence            479999999999999999999 554

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.54  E-value=7e-09  Score=36.52  Aligned_cols=24  Identities=25%  Similarity=0.491  Sum_probs=21.9

Q ss_pred             CceeCChhhHhhhchHHHHHhhhc
Q psy12265         47 KAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        47 ~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      ++|.|..|++.|...+.|..|+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~   24 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKT   24 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHH
T ss_pred             CCccCCCCCCccCCHHHHHHHHHH
Confidence            478999999999999999999875

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.54  E-value=6e-09  Score=36.41  Aligned_cols=24  Identities=25%  Similarity=0.470  Sum_probs=21.9

Q ss_pred             CceeCChhhHhhhchHHHHHhhhc
Q psy12265         47 KAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        47 ~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      +||.|..|++.|.....|..|+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~   24 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKI   24 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHH
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHH
Confidence            479999999999999999999875

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=98.50  E-value=1.1e-07  Score=33.07  Aligned_cols=26  Identities=38%  Similarity=0.792  Sum_probs=18.0

Q ss_pred             Cceecc--cccccccchhhHHHhHhhhcC
Q psy12265         18 KPYGCE--VCGRHFRQWGDLKYHKASLHS   44 (71)
Q Consensus        18 ~~~~c~--~c~~~~~~~~~l~~h~~~~~~   44 (71)
                      +||.|.  .|++.|...+.|..|++ .|+
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~-~H~   28 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKK-IHT   28 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHG-GGT
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHH-HhC
Confidence            356777  77777777777777765 454

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=98.46  E-value=2.8e-08  Score=34.65  Aligned_cols=25  Identities=20%  Similarity=0.630  Sum_probs=22.5

Q ss_pred             CceeCC--hhhHhhhchHHHHHhhhcC
Q psy12265         47 KAFQCE--YCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        47 ~~~~C~--~c~~~f~~~~~l~~h~~~~   71 (71)
                      ++|.|.  .|++.|...+.|..|++++
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H   27 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIH   27 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGG
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHh
Confidence            478999  9999999999999999863

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.45  E-value=2.8e-08  Score=44.13  Aligned_cols=29  Identities=17%  Similarity=0.330  Sum_probs=27.0

Q ss_pred             hcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265         42 LHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        42 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      .|+++++|.|..|++.|.....|..|+++
T Consensus        19 ~H~~~kpy~C~~C~k~F~~~~~L~~H~~~   47 (88)
T 1x6f_A           19 PRLQNSTYQCKHCDSKLQSTAELTSHLNI   47 (88)
T ss_dssp             SCCCCSCEECSSSCCEESSHHHHHHHHHH
T ss_pred             ccCCCCCCcCCCCCCEeCCHHHHHHHHHH
Confidence            58899999999999999999999999875

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=98.35  E-value=3.2e-07  Score=38.47  Aligned_cols=48  Identities=15%  Similarity=0.105  Sum_probs=40.3

Q ss_pred             ccccccccchhhHHHhHhhhcCCcC------ceeCC--hhhHhhhchHHHHHhhhc
Q psy12265         23 EVCGRHFRQWGDLKYHKASLHSDVK------AFQCE--YCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        23 ~~c~~~~~~~~~l~~h~~~~~~~~~------~~~C~--~c~~~f~~~~~l~~h~~~   70 (71)
                      ..|++.|.+...|..|+...|.+.+      +|.|.  .|++.+.....|..|+++
T Consensus         7 ~~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~   62 (64)
T 1zw8_A            7 KECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINA   62 (64)
T ss_dssp             TTCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHH
T ss_pred             CCCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhccc
Confidence            4599999999999999854787655      79996  799888888999999875

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.32  E-value=2e-08  Score=41.66  Aligned_cols=29  Identities=14%  Similarity=0.370  Sum_probs=24.8

Q ss_pred             HHhHhhhcCCcCceeCChhhHhhhchHHHH
Q psy12265         36 KYHKASLHSDVKAFQCEYCGKDFARKYQAH   65 (71)
Q Consensus        36 ~~h~~~~~~~~~~~~C~~c~~~f~~~~~l~   65 (71)
                      ..|++ .|++++||.|+.|++.|.....|.
T Consensus         3 ~~h~~-~H~~~k~~~C~~C~k~F~~~~~l~   31 (62)
T 1vd4_A            3 ETDER-DSTNRASFKCPVCSSTFTDLEANQ   31 (62)
T ss_dssp             CCCSS-SCCSSSEEECSSSCCEEEHHHHHH
T ss_pred             hhHHH-HcCCCCCccCCCCCchhccHHHhH
Confidence            34666 799999999999999999888775

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=98.32  E-value=5.7e-08  Score=45.60  Aligned_cols=29  Identities=10%  Similarity=0.139  Sum_probs=23.8

Q ss_pred             hcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265         42 LHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        42 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      .++|+.+|.|..|++.|.+...|..|++.
T Consensus        44 d~tGekpfyC~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           44 DLPGGGLHRCLACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             SSGGGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             cCCCCcceEcccCcchhCCHHHHHHHHhh
Confidence            46778888888888888888888888765

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.08  E-value=2.2e-06  Score=36.82  Aligned_cols=41  Identities=29%  Similarity=0.359  Sum_probs=35.1

Q ss_pred             hHHHHHHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcC
Q psy12265          4 FTYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVK   47 (71)
Q Consensus         4 ~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~   47 (71)
                      ...|..|+ .+.+++|+.|..|++.+. ...|..|+. .+++++
T Consensus        29 ~~~L~~H~-~~c~~~~~~C~~C~~~~~-~~~l~~H~~-~c~~~~   69 (75)
T 2d9k_A           29 ILKLKEHE-DYCGARTELCGNCGRNVL-VKDLKTHPE-VCGREG   69 (75)
T ss_dssp             HHHHHHHH-HHHHHCEEECSSSCCEEE-TTGGGTHHH-HBTTBS
T ss_pred             HHHHHHHH-hHcCCCceEcccCCCcCc-HHHHHHHHH-HccCCc
Confidence            56789999 899999999999999877 589999987 687653

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=97.82  E-value=4.6e-06  Score=39.17  Aligned_cols=28  Identities=29%  Similarity=0.269  Sum_probs=25.4

Q ss_pred             HhhCCCceecccccccccchhhHHHhHh
Q psy12265         13 VHLGLKPYGCEVCGRHFRQWGDLKYHKA   40 (71)
Q Consensus        13 ~~~~~~~~~c~~c~~~~~~~~~l~~h~~   40 (71)
                      .++|++||.|..|++.|.+.+.|..|++
T Consensus        44 d~tGekpfyC~~C~K~F~~~~~L~~H~r   71 (124)
T 1zr9_A           44 DLPGGGLHRCLACARYFIDSTNLKTHFR   71 (124)
T ss_dssp             SSGGGGCSEETTTTEECSSHHHHHHHTT
T ss_pred             cCCCCcceEcccCcchhCCHHHHHHHHh
Confidence            4567899999999999999999999986

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.68  E-value=0.00016  Score=30.08  Aligned_cols=41  Identities=17%  Similarity=0.257  Sum_probs=34.0

Q ss_pred             CcChHHHHHHH-hHhhCCC------ceecc--cccccccchhhHHHhHhh
Q psy12265          1 MEKFTYLKVHN-RVHLGLK------PYGCE--VCGRHFRQWGDLKYHKAS   41 (71)
Q Consensus         1 f~~~~~l~~h~-~~~~~~~------~~~c~--~c~~~~~~~~~l~~h~~~   41 (71)
                      |++...|..|+ ..|.+.+      +|.|.  .|+..+.....|..|++.
T Consensus        13 f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~   62 (64)
T 1zw8_A           13 ASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINA   62 (64)
T ss_dssp             CSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhccc
Confidence            77889999998 4787665      79996  799888888899999874

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.52  E-value=2e-05  Score=30.86  Aligned_cols=22  Identities=27%  Similarity=0.392  Sum_probs=13.0

Q ss_pred             CceecccccccccchhhHHHhH
Q psy12265         18 KPYGCEVCGRHFRQWGDLKYHK   39 (71)
Q Consensus        18 ~~~~c~~c~~~~~~~~~l~~h~   39 (71)
                      .++.|+.|+..|.....|..||
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hm   32 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHM   32 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhh
Confidence            3456666666666666666665

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=97.44  E-value=6.1e-05  Score=35.50  Aligned_cols=53  Identities=19%  Similarity=0.216  Sum_probs=41.6

Q ss_pred             CceecccccccccchhhHHHhHhh-h-------------------------------cCCcCceeCChhhHhhhchHHHH
Q psy12265         18 KPYGCEVCGRHFRQWGDLKYHKAS-L-------------------------------HSDVKAFQCEYCGKDFARKYQAH   65 (71)
Q Consensus        18 ~~~~c~~c~~~~~~~~~l~~h~~~-~-------------------------------~~~~~~~~C~~c~~~f~~~~~l~   65 (71)
                      +++.|..|...|.+.+.+..|... .                               ..+...|.|..|...|.....+.
T Consensus        31 ~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~~~  110 (127)
T 1zu1_A           31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGEDRSKCCPVCNMTFSSPVVAE  110 (127)
T ss_dssp             CSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCCSSCCSSCCCTTTEETTTTEECSSHHHHH
T ss_pred             CCCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCCccccccCCCCCeEcCCCCCEeCCHHHHH
Confidence            678999999999998888877631 0                               11234578999999999999999


Q ss_pred             Hhhhc
Q psy12265         66 SYHQI   70 (71)
Q Consensus        66 ~h~~~   70 (71)
                      .|..-
T Consensus       111 ~H~~g  115 (127)
T 1zu1_A          111 SHYIG  115 (127)
T ss_dssp             HHHTS
T ss_pred             HHHCC
Confidence            99753

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.88  E-value=0.001  Score=26.08  Aligned_cols=23  Identities=13%  Similarity=0.150  Sum_probs=21.6

Q ss_pred             CceeCChhhHhhhchHHHHHhhh
Q psy12265         47 KAFQCEYCGKDFARKYQAHSYHQ   69 (71)
Q Consensus        47 ~~~~C~~c~~~f~~~~~l~~h~~   69 (71)
                      .+|.|+.|+..|.....|+.||+
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmk   33 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMC   33 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhh
Confidence            57899999999999999999997

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=95.96  E-value=0.017  Score=28.15  Aligned_cols=61  Identities=21%  Similarity=0.321  Sum_probs=40.3

Q ss_pred             HHHHHHhHhhCCCceecccccccccchhhHHHhHhhhcCCcCceeCChhhHhhhchHHHHHhhhc
Q psy12265          6 YLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus         6 ~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      .+..|.. .-.-.+..|..|+..+ ....+..|.. ..-..++..|+.|+..+.. .+|+.|..+
T Consensus        98 ~l~~H~~-~C~~~~v~C~~C~~~~-~r~~l~~H~~-~~C~~r~~~C~~C~~~~~~-~~l~~H~~~  158 (170)
T 3hcs_A           98 HLEDHQA-HCEFALMDCPQCQRPF-QKFHINIHIL-KDCPRRQVSCDNCAASMAF-EDKEIHDQN  158 (170)
T ss_dssp             GHHHHHT-TCTTSEEECTTTCCEE-EGGGHHHHHH-HTCTTCEEECTTTCCEEEG-GGHHHHHTT
T ss_pred             HHHHHHh-cCCceeeECCCCChHH-HHHHHHHHhh-hhCCCCCeECCCCCCccCH-HHHHhHHHh
Confidence            4455542 2234567888888776 4677888875 4556677789999877643 566777643

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=95.26  E-value=0.034  Score=20.24  Aligned_cols=27  Identities=19%  Similarity=0.384  Sum_probs=21.9

Q ss_pred             ceecccccccccchhhHHHhHhhhcCC
Q psy12265         19 PYGCEVCGRHFRQWGDLKYHKASLHSD   45 (71)
Q Consensus        19 ~~~c~~c~~~~~~~~~l~~h~~~~~~~   45 (71)
                      .|.|+.|.+.+.+...|..|-...|..
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~~H~~   31 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEAVHDA   31 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHTSS
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHhcccc
Confidence            488999999999999999887655553

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=95.12  E-value=0.0088  Score=25.93  Aligned_cols=47  Identities=23%  Similarity=0.453  Sum_probs=32.3

Q ss_pred             CceecccccccccchhhHHHhHhhhcCCcCceeCChhhHhhhchHHHHHh
Q psy12265         18 KPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHSY   67 (71)
Q Consensus        18 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h   67 (71)
                      .-|.|..|+..+. +..+..|.. ...+...|.|.-|+..|.. ..++.|
T Consensus         9 V~F~C~~Cgd~lK-K~kv~~H~~-~Cr~~~~~SCIDC~~~F~~-~~y~~H   55 (79)
T 1wjv_A            9 VFFTCNACGESVK-KIQVEKHVS-NCRNCECLSCIDCGKDFWG-DDYKSH   55 (79)
T ss_dssp             CEEEESSSCCEEE-TTHHHHHHH-HCTTCCEEEETTTTEEEEG-GGTTTC
T ss_pred             eEEEcCCCCCeee-cccchhHHh-hCCCCCcEEecccCCeeCC-CCEeCE
Confidence            3488999987755 567778864 3445567889889988874 334444

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=94.72  E-value=0.057  Score=19.85  Aligned_cols=24  Identities=21%  Similarity=0.293  Sum_probs=18.4

Q ss_pred             CCceecccccccccchhhHHHhHh
Q psy12265         17 LKPYGCEVCGRHFRQWGDLKYHKA   40 (71)
Q Consensus        17 ~~~~~c~~c~~~~~~~~~l~~h~~   40 (71)
                      ...+.|..|+-+|.....+..|.+
T Consensus         6 ~~~~~C~~C~IsF~~l~ty~aHKk   29 (36)
T 1fu9_A            6 VMKKYCSTCDISFNYVKTYLAHKQ   29 (36)
T ss_dssp             CCCSEETTTTEECSSHHHHHHHHH
T ss_pred             cCcCeeccccceehhhHHHhhhhe
Confidence            345778888888888888888865

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=94.61  E-value=0.003  Score=25.38  Aligned_cols=21  Identities=14%  Similarity=0.445  Sum_probs=13.2

Q ss_pred             eeCChhhHhhhchHHHHHhhh
Q psy12265         49 FQCEYCGKDFARKYQAHSYHQ   69 (71)
Q Consensus        49 ~~C~~c~~~f~~~~~l~~h~~   69 (71)
                      -+|..|+..|..+..++-|+.
T Consensus        14 ~eC~lC~vkYs~r~slqDHIF   34 (55)
T 2yrk_A           14 PECTLCGVKYSARLSIRDHIF   34 (55)
T ss_dssp             SCCTTTTCCCCSSSCHHHHHT
T ss_pred             ccccccCcccccccchhhhhc
Confidence            356666666666666666654

>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}

Probab=93.97  E-value=0.0086  Score=26.11  Aligned_cols=40  Identities=25%  Similarity=0.736  Sum_probs=25.5

Q ss_pred             eecccccccccchhhHHHhHhhhcC---------------CcCceeCChhhHhhhc
Q psy12265         20 YGCEVCGRHFRQWGDLKYHKASLHS---------------DVKAFQCEYCGKDFAR   60 (71)
Q Consensus        20 ~~c~~c~~~~~~~~~l~~h~~~~~~---------------~~~~~~C~~c~~~f~~   60 (71)
                      -.|+.||... .+..|...|...-.               .+=.|.|+.||..|.-
T Consensus         9 ~~~PlCG~~L-~W~eLIeQML~~en~~ei~kDr~~Fl~~~e~F~FkCP~CgEEFyG   63 (95)
T 2k5c_A            9 AKCPICGSPL-KWEELIEEMLIIENFEEIVKDRERFLAQVEEFVFKCPVCGEEFYG   63 (95)
T ss_dssp             EECSSSCCEE-CHHHHHHHSTTCSTHHHHTTCHHHHHHHHHHSEEECTTTCCEEET
T ss_pred             ccCCcCCCcc-CHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHhhcCCCccHHHhc
Confidence            5799998764 46777666542111               1225899999877653

>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A

Probab=93.94  E-value=0.023  Score=28.81  Aligned_cols=25  Identities=24%  Similarity=0.493  Sum_probs=19.1

Q ss_pred             CceecccccccccchhhHHHhHhhhcCCcCceeCChhhH
Q psy12265         18 KPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGK   56 (71)
Q Consensus        18 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~   56 (71)
                      ..|.|..||..+.              |..|+.|+.|+.
T Consensus       170 ~~~~C~~CG~i~~--------------g~~p~~CP~C~~  194 (202)
T 1yuz_A          170 KFHLCPICGYIHK--------------GEDFEKCPICFR  194 (202)
T ss_dssp             CEEECSSSCCEEE--------------SSCCSBCTTTCC
T ss_pred             cEEEECCCCCEEc--------------CcCCCCCCCCCC
Confidence            4699999996643              245789999985

>2k9h_A Glycoprotein; hantavirus, zinc finger, CCHC, metal binding protein; NMR {Andes virus}

Probab=92.89  E-value=0.14  Score=20.61  Aligned_cols=46  Identities=24%  Similarity=0.394  Sum_probs=27.6

Q ss_pred             ecccccccccchhhHHHhHhhhcCCcCceeCChhh-HhhhchHHHHHhhhc
Q psy12265         21 GCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCG-KDFARKYQAHSYHQI   70 (71)
Q Consensus        21 ~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~-~~f~~~~~l~~h~~~   70 (71)
                      +|..|..--.....|..|.. .....   +|++|- ..-+..+.|+.|.++
T Consensus         5 vC~~C~~ECET~kEl~~H~~-sCp~g---qCPYC~~~~e~tesAlQaHfkv   51 (57)
T 2k9h_A            5 VCDVCHHECETAKELESHRQ-SCING---QCPYCMTITEATESALQAHYSI   51 (57)
T ss_dssp             BCTTTCCBCSSTTTHHHHHH-HHTTT---BCTTTCCBCCSSHHHHHHHHTT
T ss_pred             hhhHHHhhhhhHHHHHHHhc-cCCCC---CCCcccCcCCcCHHHHHHHHHH
Confidence            46666555555677788876 33322   466663 244677788888654

>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A

Probab=92.56  E-value=0.033  Score=19.38  Aligned_cols=20  Identities=15%  Similarity=0.173  Sum_probs=12.5

Q ss_pred             eeCChhhHhhhchHHHHHhh
Q psy12265         49 FQCEYCGKDFARKYQAHSYH   68 (71)
Q Consensus        49 ~~C~~c~~~f~~~~~l~~h~   68 (71)
                      |.|++|.........++.|.
T Consensus         4 ~~CpvCk~q~Pd~kt~~~H~   23 (28)
T 2jvx_A            4 FCCPKCQYQAPDMDTLQIHV   23 (28)
T ss_dssp             EECTTSSCEESSHHHHHHHH
T ss_pred             ccCccccccCcChHHHHHHH
Confidence            56666666666666666653

>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82

Probab=92.52  E-value=0.061  Score=24.60  Aligned_cols=27  Identities=30%  Similarity=0.619  Sum_probs=18.4

Q ss_pred             CceecccccccccchhhHHHhHhhhcCCcCceeCChhhH
Q psy12265         18 KPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGK   56 (71)
Q Consensus        18 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~   56 (71)
                      .|+.|..||..|.            ....+|-+|+.|+.
T Consensus        66 ~p~~C~~CG~~F~------------~~~~kPsrCP~CkS   92 (105)
T 2gmg_A           66 KPAQCRKCGFVFK------------AEINIPSRCPKCKS   92 (105)
T ss_dssp             CCCBBTTTCCBCC------------CCSSCCSSCSSSCC
T ss_pred             ECcChhhCcCeec------------ccCCCCCCCcCCCC
Confidence            6789999998871            11234567888864

>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A

Probab=92.41  E-value=0.15  Score=18.21  Aligned_cols=25  Identities=20%  Similarity=0.464  Sum_probs=20.8

Q ss_pred             ceecccccccccchhhHHHhHhhhc
Q psy12265         19 PYGCEVCGRHFRQWGDLKYHKASLH   43 (71)
Q Consensus        19 ~~~c~~c~~~~~~~~~l~~h~~~~~   43 (71)
                      .-.|..|.+.|+.-.+|..|++..|
T Consensus         9 kqhcrfckkkysdvknlikhire~h   33 (37)
T 2elu_A            9 KQHCRFCKKKYSDVKNLIKHIRDAH   33 (37)
T ss_dssp             CCEETTTTEECSSHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4578999999999999999987544

>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X

Probab=91.84  E-value=0.086  Score=20.55  Aligned_cols=30  Identities=30%  Similarity=0.740  Sum_probs=18.3

Q ss_pred             ceecccccccccchhhHHHhHhhhcCCcCceeCChhhHh
Q psy12265         19 PYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKD   57 (71)
Q Consensus        19 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~   57 (71)
                      .|.|--||..|+... |    . .-   ...+|++||..
T Consensus         3 iY~C~rCg~~fs~~e-l----~-~l---P~IrCpyCGyr   32 (48)
T 4ayb_P            3 VYRCGKCWKTFTDEQ-L----K-VL---PGVRCPYCGYK   32 (48)
T ss_dssp             --CCCCTTTTCCCCC-S----C-CC---SSSCCTTTCCS
T ss_pred             EEEeeccCCCccHHH-H----h-hC---CCcccCccCcE
Confidence            478999999887542 1    1 11   23579999854

>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A

Probab=91.22  E-value=0.1  Score=25.82  Aligned_cols=25  Identities=36%  Similarity=0.736  Sum_probs=18.3

Q ss_pred             CceecccccccccchhhHHHhHhhhcCCcCceeCChhhH
Q psy12265         18 KPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGK   56 (71)
Q Consensus        18 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~   56 (71)
                      ..|.|..||..+.              ++.|-.||.||.
T Consensus       137 ~~~~C~~CG~i~~--------------~~~p~~CP~Cg~  161 (170)
T 3pwf_A          137 KVYICPICGYTAV--------------DEAPEYCPVCGA  161 (170)
T ss_dssp             CEEECTTTCCEEE--------------SCCCSBCTTTCC
T ss_pred             CeeEeCCCCCeeC--------------CCCCCCCCCCCC
Confidence            4599999996653              244558999984

>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding protein, DNA deadenylas hydrolase; 1.80A {Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*

Probab=90.96  E-value=0.074  Score=27.14  Aligned_cols=24  Identities=25%  Similarity=0.490  Sum_probs=20.2

Q ss_pred             cCceeCChhhHhhhc-hHHHHHhhh
Q psy12265         46 VKAFQCEYCGKDFAR-KYQAHSYHQ   69 (71)
Q Consensus        46 ~~~~~C~~c~~~f~~-~~~l~~h~~   69 (71)
                      ..+.+|..|+..|.+ -..|..|..
T Consensus       167 ~~~L~C~~C~~~f~n~~~~LK~HL~  191 (204)
T 3sp4_A          167 QEDLKCWRCGETFGRHFTKLKAHLQ  191 (204)
T ss_dssp             GSCCBCTTTCCBCTTCHHHHHHHHH
T ss_pred             CCCceeCCCCchhhcccHHHHHHHH
Confidence            457899999999987 888888865

>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}

Probab=90.78  E-value=0.057  Score=20.25  Aligned_cols=11  Identities=36%  Similarity=0.833  Sum_probs=5.5

Q ss_pred             eeCChhhHhhh
Q psy12265         49 FQCEYCGKDFA   59 (71)
Q Consensus        49 ~~C~~c~~~f~   59 (71)
                      +.|+.|+..+.
T Consensus        10 ~~C~~C~~~i~   20 (39)
T 2i5o_A           10 VPCEKCGSLVP   20 (39)
T ss_dssp             EECTTTCCEEE
T ss_pred             cccccccCcCC
Confidence            45555555444

>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A

Probab=88.86  E-value=0.1  Score=26.16  Aligned_cols=25  Identities=20%  Similarity=0.465  Sum_probs=17.7

Q ss_pred             ceecccccccccchhhHHHhHhhhcCCcCceeCChhhH
Q psy12265         19 PYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGK   56 (71)
Q Consensus        19 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~   56 (71)
                      .|.|..||..+...             +.|-.||.|+.
T Consensus       155 ~~~C~~CG~~~~g~-------------~~p~~CP~C~~  179 (191)
T 1lko_A          155 KWRCRNCGYVHEGT-------------GAPELCPACAH  179 (191)
T ss_dssp             EEEETTTCCEEEEE-------------ECCSBCTTTCC
T ss_pred             eEEECCCCCEeeCC-------------CCCCCCCCCcC
Confidence            59999999765411             33448999985

>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...

Probab=88.14  E-value=0.067  Score=23.43  Aligned_cols=32  Identities=25%  Similarity=0.642  Sum_probs=20.8

Q ss_pred             CCceecccccccccchhhHHHhHhhhcCCcCceeCChhhHhhh
Q psy12265         17 LKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFA   59 (71)
Q Consensus        17 ~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f~   59 (71)
                      ...|.|+.|++....           ..+..-+.|+.|+..|.
T Consensus        25 ~~~y~Cp~CG~~~v~-----------r~atGiW~C~~Cg~~~a   56 (83)
T 1vq8_Z           25 NEDHACPNCGEDRVD-----------RQGTGIWQCSYCDYKFT   56 (83)
T ss_dssp             HSCEECSSSCCEEEE-----------EEETTEEEETTTCCEEE
T ss_pred             cccCcCCCCCCccee-----------ccCCCeEECCCCCCEec
Confidence            357999999864221           12233578999988654

>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}

Probab=87.95  E-value=0.23  Score=22.99  Aligned_cols=26  Identities=23%  Similarity=0.714  Sum_probs=18.5

Q ss_pred             ceecccccccccchhhHHHhHhhhcCCcCce-eCChhhHh
Q psy12265         19 PYGCEVCGRHFRQWGDLKYHKASLHSDVKAF-QCEYCGKD   57 (71)
Q Consensus        19 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~-~C~~c~~~   57 (71)
                      .|.|..|+..|..             .+.++ .||.||..
T Consensus        73 ~~~C~~CG~~~e~-------------~~~~~~~CP~Cgs~   99 (119)
T 2kdx_A           73 ELECKDCSHVFKP-------------NALDYGVCEKCHSK   99 (119)
T ss_dssp             EEECSSSSCEECS-------------CCSTTCCCSSSSSC
T ss_pred             eEEcCCCCCEEeC-------------CCCCCCcCccccCC
Confidence            4899999987754             13456 79988754

>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}

Probab=87.23  E-value=0.2  Score=21.07  Aligned_cols=48  Identities=25%  Similarity=0.483  Sum_probs=29.9

Q ss_pred             Cceec-ccccccccchhhHHHhHhhhcCCcCceeCChhhHhhhchHHHHHhh
Q psy12265         18 KPYGC-EVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHSYH   68 (71)
Q Consensus        18 ~~~~c-~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~   68 (71)
                      .+..| ..|+..+. ..++..|.. ..-..++..|..|+..+. ..+|..|.
T Consensus        15 ~~v~C~~~C~~~v~-r~~l~~H~~-~~C~~r~v~C~~C~~~~~-~~~l~~H~   63 (76)
T 2yuc_A           15 NVIPCPNRCPMKLS-RRDLPAHLQ-HDCPKRRLKCEFCGCDFS-GEAYESHE   63 (76)
T ss_dssp             SCCBCTTCCSCBCC-SSSSTTTTT-TSCTTSCCCCSSSCCCCC-HHHHHHTT
T ss_pred             cccCCCccccHHhh-HhHHHhhCH-hhCCCcceECCCCCCccC-HHHHHHHH
Confidence            44566 46766554 466666754 234456678888888765 34567775

>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}

Probab=85.19  E-value=0.6  Score=19.36  Aligned_cols=30  Identities=23%  Similarity=0.516  Sum_probs=20.5

Q ss_pred             CCceecccccccccchhhHHHhHhhhcCCcCceeCChhhHhh
Q psy12265         17 LKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDF   58 (71)
Q Consensus        17 ~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f   58 (71)
                      ...|.|..|+..+...            ...+.+|++||...
T Consensus        19 ~v~Y~C~~Cg~~~~l~------------~~~~iRC~~CG~RI   48 (63)
T 3h0g_L           19 TMIYLCADCGARNTIQ------------AKEVIRCRECGHRV   48 (63)
T ss_dssp             CCCCBCSSSCCBCCCC------------SSSCCCCSSSCCCC
T ss_pred             CeEEECCCCCCeeecC------------CCCceECCCCCcEE
Confidence            4569999998776522            12457899998643

>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain, PRMT3, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.37.1.5

Probab=84.66  E-value=1.3  Score=20.73  Aligned_cols=28  Identities=25%  Similarity=0.320  Sum_probs=23.7

Q ss_pred             CCCceecccccccccchhhHHHhHhhhc
Q psy12265         16 GLKPYGCEVCGRHFRQWGDLKYHKASLH   43 (71)
Q Consensus        16 ~~~~~~c~~c~~~~~~~~~l~~h~~~~~   43 (71)
                      .+.+..|-.|...|.....+..|++..|
T Consensus        12 e~~~~~CLFCd~~~~s~~~~l~H~k~~H   39 (121)
T 1wir_A           12 GRQHTPCLFCDRLFASAEETFSHCKLEH   39 (121)
T ss_dssp             CCCCEECSSSCCEESSHHHHHHHHHHSS
T ss_pred             CCCceeEecCCCcccCHHHHHHHHHHhc
Confidence            3467899999999999999999998554

>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...

Probab=84.32  E-value=0.45  Score=20.14  Aligned_cols=28  Identities=25%  Similarity=0.607  Sum_probs=18.7

Q ss_pred             CCceecccccccccchhhHHHhHhhhcCCcCceeCChhhH
Q psy12265         17 LKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGK   56 (71)
Q Consensus        17 ~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~   56 (71)
                      ...|.|..|+..|...           .+ .+..|+.||.
T Consensus        26 ~v~Y~C~~CG~~~e~~-----------~~-d~irCp~CG~   53 (70)
T 1twf_L           26 TLKYICAECSSKLSLS-----------RT-DAVRCKDCGH   53 (70)
T ss_dssp             CCCEECSSSCCEECCC-----------TT-STTCCSSSCC
T ss_pred             eEEEECCCCCCcceeC-----------CC-CCccCCCCCc
Confidence            3458999999877532           11 2347888886

>2djr_A Zinc finger BED domain-containing protein 2; C2H2 type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=83.43  E-value=0.37  Score=20.72  Aligned_cols=27  Identities=30%  Similarity=0.489  Sum_probs=20.1

Q ss_pred             Cceeccccccccc-------chhhHHHhHhhhcC
Q psy12265         18 KPYGCEVCGRHFR-------QWGDLKYHKASLHS   44 (71)
Q Consensus        18 ~~~~c~~c~~~~~-------~~~~l~~h~~~~~~   44 (71)
                      ..-.|..|++.+.       ..+.|.+|+...|.
T Consensus        27 ~~A~Ck~C~k~ls~g~~s~~GTS~L~rHL~~~H~   60 (76)
T 2djr_A           27 QYATCRLCGRQVSRGPGVNVGTTALWKHLKSMHR   60 (76)
T ss_dssp             SCEEESSSCCBCCCCSSCCSSSCHHHHHHHHTTH
T ss_pred             CEEECCCCCCccCCCCCCCCchHHHHHHHHHHCH
Confidence            3578999998886       35789999875453

>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav myristol group, icosahedral virus; HET: MYR; 3.30A {Grass carp reovirus} PDB: 3k1q_C 3k1q_B

Probab=81.08  E-value=0.31  Score=30.56  Aligned_cols=22  Identities=14%  Similarity=0.422  Sum_probs=0.0

Q ss_pred             ceeCChhhHhhhchHHHHHhhh
Q psy12265         48 AFQCEYCGKDFARKYQAHSYHQ   69 (71)
Q Consensus        48 ~~~C~~c~~~f~~~~~l~~h~~   69 (71)
                      .|.|.+|...|.+..+|..|++
T Consensus       116 ~~~C~vC~a~F~S~~~L~~H~~  137 (1214)
T 3iyl_X          116 SYVCNVCNARFSTMSALSEHLR  137 (1214)
T ss_dssp             ----------------------
T ss_pred             ceeehhhhhhcCCHHHHHHHHh
Confidence            5899999999999999999954

>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1

Probab=80.59  E-value=0.31  Score=20.68  Aligned_cols=13  Identities=31%  Similarity=0.841  Sum_probs=7.7

Q ss_pred             CcCceeCChhhHhh
Q psy12265         45 DVKAFQCEYCGKDF   58 (71)
Q Consensus        45 ~~~~~~C~~c~~~f   58 (71)
                      +.+.-.|+ ||+.+
T Consensus        18 ~~kT~~C~-CG~~~   30 (71)
T 1gh9_A           18 GAKTRKCV-CGRTV   30 (71)
T ss_dssp             TCSEEEET-TTEEE
T ss_pred             CCcEEECC-CCCee
Confidence            45555676 77643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	71
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	1e-06
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	3e-06
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	1e-04
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	1e-04
d1p7aa_	37	g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (	2e-04
d2cota2	38	g.37.1.1 (A:7-44) Zinc finger and SCAN domain-cont	9e-04
d1a1ia2	28	g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus)	0.004

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (90), Expect = 1e-06
 Identities = 14/34 (41%), Positives = 18/34 (52%)

Query: 12 RVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSD 45
          R H G KPY C +C   F Q G +K H    H++
Sbjct: 1  RTHSGEKPYECYICHARFTQSGTMKMHILQKHTE 34

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (88), Expect = 3e-06
 Identities = 11/35 (31%), Positives = 19/35 (54%)

Query: 18 KPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCE 52
          KPY C+ CG+ F +   L  H   +H+  +  +C+
Sbjct: 4  KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 38

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.4 bits (77), Expect = 1e-04
 Identities = 12/27 (44%), Positives = 16/27 (59%)

Query: 13 VHLGLKPYGCEVCGRHFRQWGDLKYHK 39
          +H G KPYGC  CG+ F +   L  H+
Sbjct: 1  IHSGEKPYGCVECGKAFSRSSILVQHQ 27

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.1 bits (76), Expect = 1e-04
 Identities = 13/28 (46%), Positives = 14/28 (50%)

Query: 12 RVHLGLKPYGCEVCGRHFRQWGDLKYHK 39
          R H G KPY C  C + FRQ   L  H 
Sbjct: 1  RTHTGEKPYACSHCDKTFRQKQLLDMHF 28

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 32.8 bits (75), Expect = 2e-04
 Identities = 10/30 (33%), Positives = 14/30 (46%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHK 39
            R   G+KP+ C  C R F +   L  H+
Sbjct: 2  STRGSTGIKPFQCPDCDRSFSRSDHLALHR 31

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.3 bits (71), Expect = 9e-04
 Identities = 8/30 (26%), Positives = 12/30 (40%)

Query: 10 HNRVHLGLKPYGCEVCGRHFRQWGDLKYHK 39
                  + Y C+ CG+ F    DL  H+
Sbjct: 3  SEWQQRERRRYKCDECGKSFSHSSDLSKHR 32

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 29.5 bits (67), Expect = 0.004
 Identities = 8/22 (36%), Positives = 12/22 (54%)

Query: 18 KPYGCEVCGRHFRQWGDLKYHK 39
          KP+ C +C R+F +   L  H 
Sbjct: 2  KPFQCRICMRNFSRSDHLTTHI 23

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	71
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.88
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.69
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.61
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.59
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.56
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.55
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.54
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.53
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.52
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.51
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.5
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.49
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.49
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.45
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.44
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.41
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.41
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.4
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.33
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.33
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.32
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	99.32
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.27
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.22
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.2
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	99.19
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	99.14
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.08
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.07
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.01
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.01
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.95
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.95
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.93
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.9
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.87
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.82
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.82
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.8
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.79
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.78
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.76
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.71
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.71
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.64
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.51
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.51
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.4
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.32
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	98.24
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.22
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	98.19
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	98.18
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	98.16
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.13
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	98.13
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	98.11
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	98.11
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	98.1
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	98.07
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	98.06
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.06
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.99
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.97
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.96
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.94
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.92
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.91
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.91
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.89
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.88
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.85
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.85
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.82
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.82
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.8
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.79
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.73
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	97.7
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.54
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	97.52
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.45
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	97.39
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.26
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.22
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	96.97
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.97
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	96.71
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	96.53
d1y0jb1	36	U-shaped transcription factor, different fingers {	96.49
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	96.44
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	96.43
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	96.22
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	96.2
d1yuza2	36	Nigerythrin, C-terminal domain {Desulfovibrio vulg	95.81
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	95.39
d1nnqa2	37	Rubrerythrin, C-terminal domain {Archaeon Pyrococc	95.16
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	94.7
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	94.47
d1m36a_	33	Monocytic leukemia zinc finger protein Moz {Human	94.29
d2yrka1	48	Zinc finger homeobox protein 4, ZFHX4 {Human (Homo	92.72
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	92.65
d2ak3a2	37	Microbial and mitochondrial ADK, insert "zinc fing	92.11
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	91.73
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	91.34
d1wjpa3	41	Zinc finger protein 295, ZNF295 {Human (Homo sapie	90.92
d2ghfa1	58	Zinc fingers and homeoboxes protein 1, ZHX1 {Human	90.85
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	89.85
d1fu9a_	36	U-shaped transcription factor, different fingers {	89.44
d1akya2	38	Microbial and mitochondrial ADK, insert "zinc fing	88.57
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	87.32
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	87.12
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	85.48
d1wjpa2	26	Zinc finger protein 295, ZNF295 {Human (Homo sapie	83.69
d1zina2	35	Microbial and mitochondrial ADK, insert "zinc fing	83.38
d1twfl_	46	RBP12 subunit of RNA polymerase II {Baker's yeast	81.88
d1s3ga2	35	Microbial and mitochondrial ADK, insert "zinc fing	81.38
d1zu1a2	55	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	81.13
d1lkoa2	44	Rubrerythrin, C-terminal domain {Desulfovibrio vul	80.5
d1wira_	121	Protein arginine N-methyltransferase 3 {Mouse (Mus	80.13

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.2e-23  Score=85.44  Aligned_cols=53  Identities=28%  Similarity=0.602  Sum_probs=50.4

Q ss_pred             CCceecccccccccchhhHHHhHhhhcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         17 LKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        17 ~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      |+||.| .||+.|....+|..|++ .|++++||.|.+||+.|...+.|..|++++
T Consensus         1 EK~y~C-~Cgk~F~~~~~l~~H~~-~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPC-QCGKSFTHKSQRDRHMS-MHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEEC-TTSCEESSHHHHHHHHH-HHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCC-CCCCeECCHHHhHHHhh-ccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            689999 59999999999999998 899999999999999999999999999875

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.2e-17  Score=63.10  Aligned_cols=38  Identities=29%  Similarity=0.620  Sum_probs=34.7

Q ss_pred             CCCceecccccccccchhhHHHhHhhhcCCcCceeCCh
Q psy12265         16 GLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEY   53 (71)
Q Consensus        16 ~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~   53 (71)
                      .++||.|..|+++|...++|.+|++..|++++||.|.+
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~i   39 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV   39 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSS
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCcC
Confidence            47899999999999999999999865799999999963

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2.7e-17  Score=62.02  Aligned_cols=37  Identities=24%  Similarity=0.517  Sum_probs=30.1

Q ss_pred             HHHhHhhCCCceecccccccccchhhHHHhHhhhcCCc
Q psy12265          9 VHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDV   46 (71)
Q Consensus         9 ~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~   46 (71)
                      +|+++|++++||.|..|+++|...++|..|++ .|+||
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r-~HtGE   38 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRR-THTGE   38 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHT-TTCCS
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCc-cCCCC
Confidence            36677888888888888888888888888887 78775

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=5.7e-16  Score=56.42  Aligned_cols=33  Identities=39%  Similarity=0.811  Sum_probs=27.9

Q ss_pred             HhhCCCceecccccccccchhhHHHhHhhhcCCc
Q psy12265         13 VHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDV   46 (71)
Q Consensus        13 ~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~   46 (71)
                      +|++++||.|..|+++|...++|..|++ .|+||
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r-~HtgE   33 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQR-VHTGE   33 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHH-GGGCS
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhcc-ccCCC
Confidence            4788888999999999988888888887 78775

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=2.4e-15  Score=60.48  Aligned_cols=42  Identities=38%  Similarity=0.765  Sum_probs=38.9

Q ss_pred             CcChHHHHHHHhHhhCCCceecccccccccchhhHHHhHhhhc
Q psy12265          1 MEKFTYLKVHNRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLH   43 (71)
Q Consensus         1 f~~~~~l~~h~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~   43 (71)
                      |.....|..|+++|++++||.|.+|+++|...+.|..|++ .|
T Consensus        12 F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r-~H   53 (53)
T d2csha1          12 FTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK-IH   53 (53)
T ss_dssp             ESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHT-TT
T ss_pred             ECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHh-cC
Confidence            5678899999999999999999999999999999999986 44

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=2.9e-16  Score=58.80  Aligned_cols=33  Identities=33%  Similarity=0.694  Sum_probs=19.9

Q ss_pred             HhHhhCCCceecccccccccchhhHHHhHhhhcC
Q psy12265         11 NRVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHS   44 (71)
Q Consensus        11 ~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~   44 (71)
                      .++|++++||.|..|+++|...++|..|++ .|.
T Consensus         3 ~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r-~H~   35 (37)
T d1p7aa_           3 TRGSTGIKPFQCPDCDRSFSRSDHLALHRK-RHM   35 (37)
T ss_dssp             SSTTCCSSSBCCTTTCCCBSSHHHHHHHHG-GGT
T ss_pred             CCccCCccCeEeCCCCCEecCHHHHHHHHh-cCc
Confidence            455666666666666666666666666655 443

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=2.8e-15  Score=55.73  Aligned_cols=34  Identities=41%  Similarity=0.655  Sum_probs=27.5

Q ss_pred             hHhhCCCceecccccccccchhhHHHhHhhhcCCc
Q psy12265         12 RVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDV   46 (71)
Q Consensus        12 ~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~   46 (71)
                      ++|++++||.|.+|+++|...++|..|++ .|.++
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r-~H~~~   34 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFK-RYHDP   34 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHH-HTTCS
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCc-ccCCC
Confidence            46888888888888888888888888887 67654

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=1.3e-15  Score=56.94  Aligned_cols=33  Identities=21%  Similarity=0.414  Sum_probs=30.1

Q ss_pred             hHhhhcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         38 HKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        38 h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      |.+ .|+|++||.|..|++.|...++|..|++++
T Consensus         2 h~R-~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H   34 (37)
T d1p7aa_           2 STR-GSTGIKPFQCPDCDRSFSRSDHLALHRKRH   34 (37)
T ss_dssp             CSS-TTCCSSSBCCTTTCCCBSSHHHHHHHHGGG
T ss_pred             CCC-ccCCccCeEeCCCCCEecCHHHHHHHHhcC
Confidence            455 799999999999999999999999999864

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=4.1e-16  Score=58.71  Aligned_cols=34  Identities=15%  Similarity=0.433  Sum_probs=31.0

Q ss_pred             HhHhhhcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         37 YHKASLHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        37 ~h~~~~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      +|++ .|++++||.|.+||+.|...++|..|++++
T Consensus         2 rH~~-~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~H   35 (38)
T d2cota2           2 RSEW-QQRERRRYKCDECGKSFSHSSDLSKHRRTH   35 (38)
T ss_dssp             CCCS-CCCCSCSSBCSSSCCBCSCHHHHHHHHTTT
T ss_pred             ccCc-ccCCCCCEecCCCCceeeCHHHHHHhCccC
Confidence            3666 799999999999999999999999999875

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.7e-15  Score=55.17  Aligned_cols=30  Identities=30%  Similarity=0.611  Sum_probs=28.1

Q ss_pred             hcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         42 LHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        42 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      +|++++||.|.+||+.|...+.|..|++++
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~H   30 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVH   30 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGG
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhcccc
Confidence            489999999999999999999999999874

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=5.6e-15  Score=54.83  Aligned_cols=34  Identities=41%  Similarity=0.802  Sum_probs=25.6

Q ss_pred             hHhhCCCceecccccccccchhhHHHhHhhhcCC
Q psy12265         12 RVHLGLKPYGCEVCGRHFRQWGDLKYHKASLHSD   45 (71)
Q Consensus        12 ~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~   45 (71)
                      ++|++++||.|..|+++|...++|..|++..|++
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~~   34 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTE   34 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSS
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHcccccCC
Confidence            4677888888888888888888888887545543

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.6e-15  Score=55.79  Aligned_cols=30  Identities=23%  Similarity=0.420  Sum_probs=28.3

Q ss_pred             hcCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         42 LHSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        42 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      +|+|++||.|.+|++.|...+.|..|++++
T Consensus         2 ~HTgekPy~C~~C~k~F~~~~~L~~H~r~H   31 (36)
T d1x6ha2           2 THTGEKPYACSHCDKTFRQKQLLDMHFKRY   31 (36)
T ss_dssp             TCCCCCCEECSSSSCEESSHHHHHHHHHHT
T ss_pred             CCCCCCCEECCCCCCCcCCHhHHHHhCccc
Confidence            699999999999999999999999999864

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=2.7e-15  Score=55.26  Aligned_cols=32  Identities=25%  Similarity=0.576  Sum_probs=24.6

Q ss_pred             hhCCCceecccccccccchhhHHHhHhhhcCCc
Q psy12265         14 HLGLKPYGCEVCGRHFRQWGDLKYHKASLHSDV   46 (71)
Q Consensus        14 ~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~   46 (71)
                      |++++||.|.+|++.|...++|.+|++ .|+.+
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r-~Ht~~   33 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLK-VHTDT   33 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHG-GGTSC
T ss_pred             CCCCccccCCCCCCcccChHHHHHHcc-ccCCc
Confidence            467788888888888888888888876 67654

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.45  E-value=3.4e-14  Score=52.25  Aligned_cols=29  Identities=21%  Similarity=0.423  Sum_probs=27.4

Q ss_pred             cCCcCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         43 HSDVKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        43 ~~~~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      |+|++||.|.+|++.|.+.++|..|++++
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~H   30 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVH   30 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGG
T ss_pred             CCCCccccCCCCCCcccChHHHHHHcccc
Confidence            78999999999999999999999999874

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.44  E-value=5.1e-14  Score=49.83  Aligned_cols=29  Identities=38%  Similarity=0.691  Sum_probs=26.5

Q ss_pred             CceecccccccccchhhHHHhHhhhcCCcC
Q psy12265         18 KPYGCEVCGRHFRQWGDLKYHKASLHSDVK   47 (71)
Q Consensus        18 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~   47 (71)
                      +||.|.+|+++|...+.|.+|++ .|+|++
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r-~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYR-SHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHH-TTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccC-cccCCC
Confidence            58999999999999999999998 899875

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.41  E-value=4.2e-14  Score=49.56  Aligned_cols=28  Identities=32%  Similarity=0.708  Sum_probs=22.0

Q ss_pred             CCceecccccccccchhhHHHhHhhhcCC
Q psy12265         17 LKPYGCEVCGRHFRQWGDLKYHKASLHSD   45 (71)
Q Consensus        17 ~~~~~c~~c~~~~~~~~~l~~h~~~~~~~   45 (71)
                      |+||.|.+|+++|..+++|.+|++ .|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r-~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIR-THTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHH-HHHC
T ss_pred             CcCccCCCCcCEecccccccccCC-CccC
Confidence            578888888888888888888877 6764

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=2.1e-14  Score=53.26  Aligned_cols=28  Identities=21%  Similarity=0.366  Sum_probs=26.7

Q ss_pred             hcCCcCceeCChhhHhhhchHHHHHhhh
Q psy12265         42 LHSDVKAFQCEYCGKDFARKYQAHSYHQ   69 (71)
Q Consensus        42 ~~~~~~~~~C~~c~~~f~~~~~l~~h~~   69 (71)
                      +|+|++||.|++|++.|+..++|..|++
T Consensus         2 ~HTgekP~~C~~C~k~F~~~~~L~~H~~   29 (36)
T d2ct1a2           2 THSGEKPYECYICHARFTQSGTMKMHIL   29 (36)
T ss_dssp             CCSCCCSEECTTTCCEESCHHHHHHHHH
T ss_pred             ccCCCCCEeCCCCcccccchHHHHHHcc
Confidence            6999999999999999999999999975

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=9e-14  Score=49.12  Aligned_cols=29  Identities=28%  Similarity=0.559  Sum_probs=26.0

Q ss_pred             CceecccccccccchhhHHHhHhhhcCCcC
Q psy12265         18 KPYGCEVCGRHFRQWGDLKYHKASLHSDVK   47 (71)
Q Consensus        18 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~   47 (71)
                      +||.|.+|+++|..+++|.+|++ +|+|++
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r-~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIK-THQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHH-GGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcC-ccCCcC
Confidence            68999999999999999999998 798874

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.33  E-value=5.9e-14  Score=49.19  Aligned_cols=26  Identities=27%  Similarity=0.567  Sum_probs=24.2

Q ss_pred             cCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         46 VKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        46 ~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      |+||.|.+|++.|...+.|..|++++
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~H   26 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTH   26 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHH
T ss_pred             CcCccCCCCcCEecccccccccCCCc
Confidence            68999999999999999999999864

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.33  E-value=3.6e-14  Score=55.43  Aligned_cols=40  Identities=15%  Similarity=0.376  Sum_probs=31.8

Q ss_pred             HHHHHHhHhhCCCceeccc--ccccccchhhHHHhHhhhcCCcC
Q psy12265          6 YLKVHNRVHLGLKPYGCEV--CGRHFRQWGDLKYHKASLHSDVK   47 (71)
Q Consensus         6 ~l~~h~~~~~~~~~~~c~~--c~~~~~~~~~l~~h~~~~~~~~~   47 (71)
                      .+..|+. |.+++||.|..  |+++|...++|..|++ .|+|++
T Consensus         6 ~l~~h~~-h~gekpy~C~~~~C~k~F~~~~~L~~H~r-~Htgek   47 (47)
T d1ncsa_           6 SIDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQ-THLEDR   47 (47)
T ss_dssp             SGGGSCE-EETTTEEECCCTTCCCEECSSSSHHHHHH-HHTTTC
T ss_pred             hhcchhh-ccCCCCeECCcCCCCccccCchHHHhhcc-cccCCC
Confidence            3445554 88889999976  9999999999999987 788874

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=6.2e-14  Score=48.14  Aligned_cols=22  Identities=23%  Similarity=0.597  Sum_probs=10.8

Q ss_pred             ceeCChhhHhhhchHHHHHhhh
Q psy12265         48 AFQCEYCGKDFARKYQAHSYHQ   69 (71)
Q Consensus        48 ~~~C~~c~~~f~~~~~l~~h~~   69 (71)
                      ||+|.+||+.|...+.|..|++
T Consensus         2 Py~C~eCgK~F~~~s~L~~Hqr   23 (26)
T d1x6ea2           2 PYKCLECGKAFSQNSGLINHQR   23 (26)
T ss_dssp             CEECSSSCCEESSHHHHHHHHH
T ss_pred             CccCCCCcCeeccCcccccCcc
Confidence            4444444444444444444444

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=3.6e-13  Score=49.77  Aligned_cols=32  Identities=41%  Similarity=0.854  Sum_probs=29.7

Q ss_pred             eeccc--ccccccchhhHHHhHhhhcCCcCceeCC
Q psy12265         20 YGCEV--CGRHFRQWGDLKYHKASLHSDVKAFQCE   52 (71)
Q Consensus        20 ~~c~~--c~~~~~~~~~l~~h~~~~~~~~~~~~C~   52 (71)
                      |.|..  |++.|.....|.+|++ .|+|++||.|+
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r-~Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMK-LHSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHH-HHHTSCCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccC-eeCCCCCEeCC
Confidence            67876  9999999999999998 89999999996

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=8e-13  Score=45.29  Aligned_cols=26  Identities=42%  Similarity=0.876  Sum_probs=23.9

Q ss_pred             CceecccccccccchhhHHHhHhhhcC
Q psy12265         18 KPYGCEVCGRHFRQWGDLKYHKASLHS   44 (71)
Q Consensus        18 ~~~~c~~c~~~~~~~~~l~~h~~~~~~   44 (71)
                      +||.|.+||++|...++|..|++ +|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~Hqr-iHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQR-IHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHH-HHH
T ss_pred             CCccCCCCcCeeccCcccccCcc-CCC
Confidence            69999999999999999999998 663

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.22  E-value=1.1e-12  Score=46.32  Aligned_cols=25  Identities=28%  Similarity=0.604  Sum_probs=23.5

Q ss_pred             CceeCChhhHhhhchHHHHHhhhcC
Q psy12265         47 KAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        47 ~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      +||.|++|++.|...+.|.+|++++
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~H   25 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSH   25 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTT
T ss_pred             CcCCCCCCCCCCCCchHcccccCcc
Confidence            5899999999999999999999875

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=1.2e-12  Score=46.20  Aligned_cols=25  Identities=28%  Similarity=0.481  Sum_probs=23.4

Q ss_pred             CceeCChhhHhhhchHHHHHhhhcC
Q psy12265         47 KAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        47 ~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      +||.|.+|++.|.+.+.|..|++++
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~H   25 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTH   25 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGG
T ss_pred             CCEECCcCCCeecchHHhhhhcCcc
Confidence            5899999999999999999999874

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=8.4e-12  Score=44.20  Aligned_cols=28  Identities=29%  Similarity=0.611  Sum_probs=24.6

Q ss_pred             Cceeccc--ccccccchhhHHHhHhhhcCCc
Q psy12265         18 KPYGCEV--CGRHFRQWGDLKYHKASLHSDV   46 (71)
Q Consensus        18 ~~~~c~~--c~~~~~~~~~l~~h~~~~~~~~   46 (71)
                      +||.|..  |+++|...++|.+|++ .|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r-~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLR-SHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHH-HTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcC-cCcCC
Confidence            5899988  9999999999999988 78875

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=1e-11  Score=44.00  Aligned_cols=28  Identities=32%  Similarity=0.724  Sum_probs=23.9

Q ss_pred             Cceeccc--ccccccchhhHHHhHhhhcCCc
Q psy12265         18 KPYGCEV--CGRHFRQWGDLKYHKASLHSDV   46 (71)
Q Consensus        18 ~~~~c~~--c~~~~~~~~~l~~h~~~~~~~~   46 (71)
                      +||.|..  |+++|...++|.+|++ .|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r-~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVR-IHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHH-HHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCcccc-ccCCC
Confidence            5889976  9999999999999988 78875

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.08  E-value=7.7e-13  Score=51.59  Aligned_cols=37  Identities=30%  Similarity=0.545  Sum_probs=31.4

Q ss_pred             hhHHHhHhhhcCCcCceeCCh--hhHhhhchHHHHHhhhcC
Q psy12265         33 GDLKYHKASLHSDVKAFQCEY--CGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        33 ~~l~~h~~~~~~~~~~~~C~~--c~~~f~~~~~l~~h~~~~   71 (71)
                      +.+..|+  .|++++||.|.+  |++.|...+.|..|++++
T Consensus         5 ~~l~~h~--~h~gekpy~C~~~~C~k~F~~~~~L~~H~r~H   43 (47)
T d1ncsa_           5 GSIDKYV--KEMPDKTFECLFPGCTKTFKRRYNIRSHIQTH   43 (47)
T ss_dssp             SSGGGSC--EEETTTEEECCCTTCCCEECSSSSHHHHHHHH
T ss_pred             chhcchh--hccCCCCeECCcCCCCccccCchHHHhhcccc
Confidence            4455665  489999999987  999999999999999863

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=6.5e-11  Score=42.19  Aligned_cols=29  Identities=34%  Similarity=0.819  Sum_probs=25.2

Q ss_pred             Cceecc--cccccccchhhHHHhHhhhcCCcC
Q psy12265         18 KPYGCE--VCGRHFRQWGDLKYHKASLHSDVK   47 (71)
Q Consensus        18 ~~~~c~--~c~~~~~~~~~l~~h~~~~~~~~~   47 (71)
                      +||.|+  .|+++|...++|.+|++ .|+|++
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r-~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKR-THTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHT-TTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcC-cccccC
Confidence            589996  59999999999999998 799874

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=4e-11  Score=44.84  Aligned_cols=25  Identities=28%  Similarity=0.551  Sum_probs=23.4

Q ss_pred             CcCceeCChhhHhhhchHHHHHhhh
Q psy12265         45 DVKAFQCEYCGKDFARKYQAHSYHQ   69 (71)
Q Consensus        45 ~~~~~~C~~c~~~f~~~~~l~~h~~   69 (71)
                      .++||.|..||+.|...++|.+|++
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r   26 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIK   26 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHH
T ss_pred             CCCCccCCCCCCCcCChHHhhccCc
Confidence            4789999999999999999999975

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.01  E-value=1.8e-10  Score=41.25  Aligned_cols=28  Identities=36%  Similarity=0.739  Sum_probs=23.4

Q ss_pred             CCceeccc--ccccccchhhHHHhHhhhcCC
Q psy12265         17 LKPYGCEV--CGRHFRQWGDLKYHKASLHSD   45 (71)
Q Consensus        17 ~~~~~c~~--c~~~~~~~~~l~~h~~~~~~~   45 (71)
                      |+||.|..  |+++|+..++|.+|++ .|+.
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r-~Ht~   30 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKK-SHQE   30 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHG-GGTC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhh-hccC
Confidence            57889987  9999999999999987 6764

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.95  E-value=1.4e-10  Score=40.64  Aligned_cols=27  Identities=41%  Similarity=0.939  Sum_probs=20.6

Q ss_pred             Cceeccc--ccccccchhhHHHhHhhhcCC
Q psy12265         18 KPYGCEV--CGRHFRQWGDLKYHKASLHSD   45 (71)
Q Consensus        18 ~~~~c~~--c~~~~~~~~~l~~h~~~~~~~   45 (71)
                      +||.|..  |+++|...++|.+|++ .|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r-~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIR-IHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTH-HHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcC-ccCC
Confidence            5788876  8888888888888876 6654

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=5.5e-11  Score=42.05  Aligned_cols=25  Identities=20%  Similarity=0.527  Sum_probs=23.0

Q ss_pred             CceeCCh--hhHhhhchHHHHHhhhcC
Q psy12265         47 KAFQCEY--CGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        47 ~~~~C~~--c~~~f~~~~~l~~h~~~~   71 (71)
                      +||.|.+  |++.|...+.|..|++++
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~H   27 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSH   27 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHT
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcC
Confidence            5899988  999999999999999875

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.93  E-value=7.1e-11  Score=42.32  Aligned_cols=26  Identities=19%  Similarity=0.492  Sum_probs=23.7

Q ss_pred             cCceeCCh--hhHhhhchHHHHHhhhcC
Q psy12265         46 VKAFQCEY--CGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        46 ~~~~~C~~--c~~~f~~~~~l~~h~~~~   71 (71)
                      ++||.|.+  |++.|...++|.+|++++
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~H   28 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSH   28 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGG
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhc
Confidence            57999987  999999999999999874

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=7.1e-11  Score=41.79  Aligned_cols=25  Identities=36%  Similarity=0.875  Sum_probs=22.6

Q ss_pred             CceeCCh--hhHhhhchHHHHHhhhcC
Q psy12265         47 KAFQCEY--CGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        47 ~~~~C~~--c~~~f~~~~~l~~h~~~~   71 (71)
                      +||.|++  |++.|...+.|..|++++
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~H   27 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIH   27 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHH
T ss_pred             CCccCCCCCCCceECcHHHcCcccccc
Confidence            5899976  999999999999999863

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=4.3e-10  Score=39.01  Aligned_cols=26  Identities=38%  Similarity=0.792  Sum_probs=18.7

Q ss_pred             Cceeccc--ccccccchhhHHHhHhhhcC
Q psy12265         18 KPYGCEV--CGRHFRQWGDLKYHKASLHS   44 (71)
Q Consensus        18 ~~~~c~~--c~~~~~~~~~l~~h~~~~~~   44 (71)
                      +||.|..  |+++|+..++|.+|++ .|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r-~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHIL-THA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHH-HHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHh-hcc
Confidence            4777766  7777777777777776 453

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.82  E-value=4.5e-10  Score=37.97  Aligned_cols=24  Identities=38%  Similarity=0.924  Sum_probs=14.0

Q ss_pred             CCceecccccccccchhhHHHhHh
Q psy12265         17 LKPYGCEVCGRHFRQWGDLKYHKA   40 (71)
Q Consensus        17 ~~~~~c~~c~~~~~~~~~l~~h~~   40 (71)
                      |+||.|..|+..|..+....+|..
T Consensus         1 EkPf~C~~CgrkFArsderkRH~k   24 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTK   24 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHG
T ss_pred             CCCcccchhhhhhhcchhhhhhhh
Confidence            356666666666666655555543

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=2.7e-09  Score=37.32  Aligned_cols=32  Identities=41%  Similarity=0.701  Sum_probs=29.0

Q ss_pred             CCceecccccccccchhhHHHhHhhhcCCcCce
Q psy12265         17 LKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAF   49 (71)
Q Consensus        17 ~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~   49 (71)
                      .+...|..||+.|...-.|.+|.. .|++++||
T Consensus         3 rk~~~ce~cgk~frdvyhlnrhkl-shs~ekpy   34 (35)
T d2epra1           3 RKQVACEICGKIFRDVYHLNRHKL-SHSGEKPY   34 (35)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHGG-GSCSCCCC
T ss_pred             chhhhHHHHHHHHHHHHHHHhhhc-ccCCCCCC
Confidence            356789999999999999999988 89999998

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.80  E-value=2.3e-10  Score=40.06  Aligned_cols=25  Identities=20%  Similarity=0.579  Sum_probs=22.4

Q ss_pred             CceeCCh--hhHhhhchHHHHHhhhcC
Q psy12265         47 KAFQCEY--CGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        47 ~~~~C~~--c~~~f~~~~~l~~h~~~~   71 (71)
                      +||.|.+  |++.|...++|..|++++
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~H   27 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIH   27 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHH
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCcc
Confidence            5899977  999999999999999863

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=1.1e-10  Score=40.55  Aligned_cols=25  Identities=24%  Similarity=0.583  Sum_probs=22.4

Q ss_pred             CceeCCh--hhHhhhchHHHHHhhhcC
Q psy12265         47 KAFQCEY--CGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        47 ~~~~C~~--c~~~f~~~~~l~~h~~~~   71 (71)
                      +||.|+.  |++.|...++|..|++++
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~H   27 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTH   27 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHH
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhc
Confidence            5899977  999999999999999863

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=6.5e-10  Score=39.52  Aligned_cols=25  Identities=32%  Similarity=0.802  Sum_probs=22.4

Q ss_pred             CceeCC--hhhHhhhchHHHHHhhhcC
Q psy12265         47 KAFQCE--YCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        47 ~~~~C~--~c~~~f~~~~~l~~h~~~~   71 (71)
                      +||.|+  .|++.|...++|..|++++
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~H   27 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTH   27 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTT
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcc
Confidence            589995  6999999999999999875

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=3.8e-09  Score=34.62  Aligned_cols=26  Identities=42%  Similarity=0.809  Sum_probs=19.9

Q ss_pred             ceecccccccccchhhHHHhHhhhcCC
Q psy12265         19 PYGCEVCGRHFRQWGDLKYHKASLHSD   45 (71)
Q Consensus        19 ~~~c~~c~~~~~~~~~l~~h~~~~~~~   45 (71)
                      |+.|..|++.|+.+..|..|++ .|+|
T Consensus         1 phkc~~c~kcfsrkdklk~hmr-~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMR-CHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGG-GCCC
T ss_pred             CCccchhhhHhcchhHHHHHhh-ccCC
Confidence            5678888888888888888877 6664

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=9.2e-09  Score=34.32  Aligned_cols=27  Identities=30%  Similarity=0.566  Sum_probs=23.4

Q ss_pred             ceecccccccccchhhHHHhHhhhcCCc
Q psy12265         19 PYGCEVCGRHFRQWGDLKYHKASLHSDV   46 (71)
Q Consensus        19 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~   46 (71)
                      .++|..|+++|..++.|++|+. .|+++
T Consensus         2 ~hvc~ecgkaf~essklkrh~l-vhtge   28 (28)
T d1ubdc2           2 VHVCAECGKAFVESSKLKRHQL-VHTGE   28 (28)
T ss_dssp             CEECTTTCCEESSHHHHHHHGG-GTSCC
T ss_pred             cchHHHHhHHHHHHHHHHHHhh-cccCC
Confidence            3689999999999999999987 78875

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.71  E-value=8.3e-09  Score=34.81  Aligned_cols=26  Identities=35%  Similarity=0.765  Sum_probs=23.7

Q ss_pred             cCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         46 VKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        46 ~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      ++||.|..||+.|+......+|.+++
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH   26 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIH   26 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGG
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhc
Confidence            58999999999999999999998764

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=9.5e-09  Score=37.60  Aligned_cols=23  Identities=30%  Similarity=0.443  Sum_probs=21.0

Q ss_pred             CcChHHHHHHHhHhhCCCceecc
Q psy12265          1 MEKFTYLKVHNRVHLGLKPYGCE   23 (71)
Q Consensus         1 f~~~~~l~~h~~~~~~~~~~~c~   23 (71)
                      |.....|..|+++|++++||.|.
T Consensus        13 F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2          13 FNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             ESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             eCChhHhccccCeeCCCCCEeCC
Confidence            56788999999999999999996

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=1.5e-08  Score=33.16  Aligned_cols=24  Identities=33%  Similarity=0.652  Sum_probs=21.5

Q ss_pred             ceeCChhhHhhhchHHHHHhhhcC
Q psy12265         48 AFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        48 ~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      |.+|+.|++.|+.+..|.-|++.+
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~h   24 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCH   24 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGC
T ss_pred             CCccchhhhHhcchhHHHHHhhcc
Confidence            458999999999999999999864

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=8e-08  Score=32.15  Aligned_cols=29  Identities=24%  Similarity=0.513  Sum_probs=24.7

Q ss_pred             CCceecccccccccchhhHHHhHhhhcCCc
Q psy12265         17 LKPYGCEVCGRHFRQWGDLKYHKASLHSDV   46 (71)
Q Consensus        17 ~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~   46 (71)
                      ++||+|..|......++.|..|.+ .|+|+
T Consensus         1 erpfkcqlcsy~srnssqltvhlr-~htgd   29 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLR-SHTGD   29 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHT-TCCSC
T ss_pred             CCcceeeecccccCCchheEEeee-cccCc
Confidence            578999999988888899999987 68763

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=1.1e-07  Score=32.47  Aligned_cols=29  Identities=38%  Similarity=0.833  Sum_probs=23.6

Q ss_pred             CCceecccccccccchhhHHHhHhhhcCCc
Q psy12265         17 LKPYGCEVCGRHFRQWGDLKYHKASLHSDV   46 (71)
Q Consensus        17 ~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~   46 (71)
                      ++||.|+.|...|..+..+.-|.+ .|.|.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvr-shdg~   29 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVR-SHDGS   29 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHH-HHSCC
T ss_pred             CCCcccchHHHHhhccccceEeee-cccCc
Confidence            578999999999998888888877 56653

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=2.9e-08  Score=33.91  Aligned_cols=25  Identities=28%  Similarity=0.513  Sum_probs=22.3

Q ss_pred             cCceeCChhhHhhhchHHHHHhhhc
Q psy12265         46 VKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        46 ~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      ++||.|++|...|..+.-+..|.+.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrs   25 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRS   25 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHH
T ss_pred             CCCcccchHHHHhhccccceEeeec
Confidence            5799999999999999998888764

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=1.5e-07  Score=34.54  Aligned_cols=22  Identities=32%  Similarity=0.906  Sum_probs=11.2

Q ss_pred             CCceecccccccccchhhHHHh
Q psy12265         17 LKPYGCEVCGRHFRQWGDLKYH   38 (71)
Q Consensus        17 ~~~~~c~~c~~~~~~~~~l~~h   38 (71)
                      -+||.|..|++.|.-..++.+|
T Consensus         3 iKPYeC~~C~KrFMWRDSF~RH   24 (44)
T d2csha2           3 IKPYECNICAKRFMWRDSFHRH   24 (44)
T ss_dssp             CCCEECSSSCCEESCHHHHHHH
T ss_pred             CCceeccchhhhhhhHHHHHHh
Confidence            3455555555555554444443

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.22  E-value=6.1e-07  Score=30.80  Aligned_cols=27  Identities=37%  Similarity=0.760  Sum_probs=21.9

Q ss_pred             ceecccccccccchhhHHHhHhhhcCC
Q psy12265         19 PYGCEVCGRHFRQWGDLKYHKASLHSD   45 (71)
Q Consensus        19 ~~~c~~c~~~~~~~~~l~~h~~~~~~~   45 (71)
                      ||.|..|+..|+...-+.+|++..|.|
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~g   27 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHSG   27 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhcC
Confidence            688888888888888888888766665

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.19  E-value=1.5e-07  Score=30.46  Aligned_cols=21  Identities=24%  Similarity=0.627  Sum_probs=15.1

Q ss_pred             ceeCChhhHhhhchHHHHHhh
Q psy12265         48 AFQCEYCGKDFARKYQAHSYH   68 (71)
Q Consensus        48 ~~~C~~c~~~f~~~~~l~~h~   68 (71)
                      ||+|..|...|.++.+|+.|+
T Consensus         2 pykcsscsqqfmqkkdlqshm   22 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHM   22 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHH
Confidence            667777777777777777775

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=98.18  E-value=2.2e-07  Score=30.06  Aligned_cols=21  Identities=33%  Similarity=0.744  Sum_probs=12.1

Q ss_pred             eecccccccccchhhHHHhHh
Q psy12265         20 YGCEVCGRHFRQWGDLKYHKA   40 (71)
Q Consensus        20 ~~c~~c~~~~~~~~~l~~h~~   40 (71)
                      |.|..|..+|..++.|.+|++
T Consensus         1 ykcglcersfveksalsrhqr   21 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQR   21 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGG
T ss_pred             CcccchHHHHHHHHHHHHHHH
Confidence            345556666666666665554

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=9e-08  Score=32.33  Aligned_cols=23  Identities=22%  Similarity=0.466  Sum_probs=13.0

Q ss_pred             ceeCChhhHhhhchHHHHHhhhc
Q psy12265         48 AFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        48 ~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      ||.|.+|....+..++|..|+++
T Consensus         2 py~cqyc~yrsadssnlkthikt   24 (30)
T d1klra_           2 TYQCQYCEFRSADSSNLKTHIKT   24 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHH
T ss_pred             Cccccccccccccchhhhhhhhc
Confidence            55555555555555555555543

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=1.6e-06  Score=29.49  Aligned_cols=23  Identities=30%  Similarity=0.778  Sum_probs=18.3

Q ss_pred             Cceeccc--ccccccchhhHHHhHh
Q psy12265         18 KPYGCEV--CGRHFRQWGDLKYHKA   40 (71)
Q Consensus        18 ~~~~c~~--c~~~~~~~~~l~~h~~   40 (71)
                      +||.|..  |+++++.+++|..|++
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k   25 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVK   25 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHH
T ss_pred             CCeecccCCCCcccCCHHHHHHHHH
Confidence            5788876  8888888888888876

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=3e-07  Score=30.88  Aligned_cols=22  Identities=36%  Similarity=0.818  Sum_probs=13.7

Q ss_pred             ceecccccccccchhhHHHhHh
Q psy12265         19 PYGCEVCGRHFRQWGDLKYHKA   40 (71)
Q Consensus        19 ~~~c~~c~~~~~~~~~l~~h~~   40 (71)
                      ||.|..|.-+|..+++|..||.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmk   22 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMK   22 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHH
T ss_pred             CcccceeeeeEeeccchhHhhh
Confidence            4666666666666666666654

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.11  E-value=2e-06  Score=27.70  Aligned_cols=24  Identities=38%  Similarity=0.747  Sum_probs=21.6

Q ss_pred             CceecccccccccchhhHHHhHhh
Q psy12265         18 KPYGCEVCGRHFRQWGDLKYHKAS   41 (71)
Q Consensus        18 ~~~~c~~c~~~~~~~~~l~~h~~~   41 (71)
                      .||.|..|...|..+.+|..|+..
T Consensus         1 mpykcsscsqqfmqkkdlqshmik   24 (26)
T d2dlqa1           1 MPYKCSSCSQQFMQKKDLQSHMIK   24 (26)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCcccHHHHHHHHHHHHHHHHHh
Confidence            489999999999999999999853

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=98.11  E-value=1.9e-07  Score=31.31  Aligned_cols=22  Identities=36%  Similarity=0.773  Sum_probs=11.8

Q ss_pred             ceeccc--ccccccchhhHHHhHh
Q psy12265         19 PYGCEV--CGRHFRQWGDLKYHKA   40 (71)
Q Consensus        19 ~~~c~~--c~~~~~~~~~l~~h~~   40 (71)
                      ||.|+.  |++.|+.++.|++|..
T Consensus         3 py~c~hegcdk~fs~ps~lkrhek   26 (29)
T d2j7ja2           3 PYECPHEGCDKRFSLPSRLKRHEK   26 (29)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHH
T ss_pred             CccCCccCccccccCHHHHhhhhh
Confidence            555543  5555555555555543

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.10  E-value=1.4e-06  Score=28.50  Aligned_cols=26  Identities=31%  Similarity=0.480  Sum_probs=22.8

Q ss_pred             ecccccccccchhhHHHhHhhhcCCcC
Q psy12265         21 GCEVCGRHFRQWGDLKYHKASLHSDVK   47 (71)
Q Consensus        21 ~c~~c~~~~~~~~~l~~h~~~~~~~~~   47 (71)
                      .|+.|.+.|.++..|..|-+ .|+|++
T Consensus         2 qcp~c~k~f~skyylkvhnr-~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNR-KHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHH-HHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccc-cccCCC
Confidence            58999999999999999987 688874

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=2.7e-06  Score=28.60  Aligned_cols=29  Identities=31%  Similarity=0.485  Sum_probs=24.7

Q ss_pred             CceecccccccccchhhHHHhHhhhcCCc
Q psy12265         18 KPYGCEVCGRHFRQWGDLKYHKASLHSDV   46 (71)
Q Consensus        18 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~   46 (71)
                      +||.|..|......+++|..|+...|..+
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhske   29 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CCccccccccccccchhhhhhhhcccccC
Confidence            68999999999999999999998656544

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=98.06  E-value=2.3e-06  Score=27.56  Aligned_cols=23  Identities=17%  Similarity=0.615  Sum_probs=21.0

Q ss_pred             eeCChhhHhhhchHHHHHhhhcC
Q psy12265         49 FQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        49 ~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      |+|..|.++|-.++.|.+|++++
T Consensus         1 ykcglcersfveksalsrhqrvh   23 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVH   23 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGT
T ss_pred             CcccchHHHHHHHHHHHHHHHhh
Confidence            57999999999999999999875

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.06  E-value=4.7e-07  Score=31.10  Aligned_cols=22  Identities=23%  Similarity=0.560  Sum_probs=20.4

Q ss_pred             ceeCChhhHhhhchHHHHHhhh
Q psy12265         48 AFQCEYCGKDFARKYQAHSYHQ   69 (71)
Q Consensus        48 ~~~C~~c~~~f~~~~~l~~h~~   69 (71)
                      ||.|..|++.|+.+..|.+|+.
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~q   22 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQ   22 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHT
T ss_pred             CcccccccchhhHHHHHHHHHH
Confidence            7999999999999999999974

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=9.9e-07  Score=29.42  Aligned_cols=26  Identities=15%  Similarity=0.272  Sum_probs=22.9

Q ss_pred             cCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         46 VKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        46 ~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      ++||+|..|.....+.+.|..|.+.+
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~h   26 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSH   26 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTC
T ss_pred             CCcceeeecccccCCchheEEeeecc
Confidence            57999999999989999999998764

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=1.4e-06  Score=28.93  Aligned_cols=23  Identities=22%  Similarity=0.518  Sum_probs=20.2

Q ss_pred             eeCChhhHhhhchHHHHHhhhcC
Q psy12265         49 FQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        49 ~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      ..|.+||+.|...+.|.+|+-++
T Consensus         3 hvc~ecgkaf~essklkrh~lvh   25 (28)
T d1ubdc2           3 HVCAECGKAFVESSKLKRHQLVH   25 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHGGGT
T ss_pred             chHHHHhHHHHHHHHHHHHhhcc
Confidence            46999999999999999998653

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=9.6e-07  Score=29.68  Aligned_cols=23  Identities=22%  Similarity=0.563  Sum_probs=18.0

Q ss_pred             CceeCChhhHhhhchHHHHHhhh
Q psy12265         47 KAFQCEYCGKDFARKYQAHSYHQ   69 (71)
Q Consensus        47 ~~~~C~~c~~~f~~~~~l~~h~~   69 (71)
                      +||+|..|.....++++|..|++
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~k   23 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMK   23 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHH
T ss_pred             CCcccceecccccCcchHHHHHH
Confidence            47888888888888888888865

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.94  E-value=7.8e-06  Score=29.56  Aligned_cols=28  Identities=32%  Similarity=0.616  Sum_probs=23.5

Q ss_pred             CceecccccccccchhhHHHhHhhhcCCc
Q psy12265         18 KPYGCEVCGRHFRQWGDLKYHKASLHSDV   46 (71)
Q Consensus        18 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~   46 (71)
                      +.|.|..|++.|.+-.+|-.|+. .|..+
T Consensus         4 r~~~C~~C~k~F~s~qALGGH~~-~Hr~~   31 (37)
T d1njqa_           4 RSYTCSFCKREFRSAQALGGHMN-VHRRD   31 (37)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHH-TTCCS
T ss_pred             CccCCCCCCCccCCcccccchHh-hhcch
Confidence            56899999999999999999987 67544

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.92  E-value=5.1e-06  Score=27.72  Aligned_cols=25  Identities=16%  Similarity=0.454  Sum_probs=21.7

Q ss_pred             CceeCC--hhhHhhhchHHHHHhhhcC
Q psy12265         47 KAFQCE--YCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        47 ~~~~C~--~c~~~f~~~~~l~~h~~~~   71 (71)
                      .||.|+  -|++.|+.++.|.+|.+++
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            589996  5999999999999998863

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=5.1e-06  Score=28.44  Aligned_cols=28  Identities=39%  Similarity=0.743  Sum_probs=21.6

Q ss_pred             Cceeccc--ccccccchhhHHHhHhhhcCC
Q psy12265         18 KPYGCEV--CGRHFRQWGDLKYHKASLHSD   45 (71)
Q Consensus        18 ~~~~c~~--c~~~~~~~~~l~~h~~~~~~~   45 (71)
                      +||.|..  |.+.|+..++...|+...|..
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs~   30 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHSN   30 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTCS
T ss_pred             CCccccCCChhhhhcchhhhhhhccccccC
Confidence            5888876  899999998888887335643

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=8.9e-06  Score=26.84  Aligned_cols=26  Identities=35%  Similarity=0.664  Sum_probs=21.3

Q ss_pred             CceecccccccccchhhHHHhHhhhcC
Q psy12265         18 KPYGCEVCGRHFRQWGDLKYHKASLHS   44 (71)
Q Consensus        18 ~~~~c~~c~~~~~~~~~l~~h~~~~~~   44 (71)
                      +||.|..|+..-...++|..|++ .|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~r-ihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLR-IHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH-HSC
T ss_pred             CCcccccccchhcchhhHhhhhh-ccc
Confidence            68889999888888888888877 564

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=1.3e-06  Score=29.26  Aligned_cols=23  Identities=17%  Similarity=0.355  Sum_probs=17.4

Q ss_pred             eeCChhhHhhhchHHHHHhhhcC
Q psy12265         49 FQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        49 ~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      |.|++||.....++-|+.|++.+
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsH   24 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTH   24 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHT
T ss_pred             ccccccCcccCCHHHHHHHHHHh
Confidence            56777887777888888887753

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=6.2e-06  Score=27.58  Aligned_cols=24  Identities=21%  Similarity=0.538  Sum_probs=22.1

Q ss_pred             ceeCChhhHhhhchHHHHHhhhcC
Q psy12265         48 AFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        48 ~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      ||.|..|...|..+.+|..||+.+
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkSK   24 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKSK   24 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHSS
T ss_pred             CcccceeeeeEeeccchhHhhhhh
Confidence            789999999999999999999864

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=7.9e-06  Score=29.86  Aligned_cols=25  Identities=24%  Similarity=0.610  Sum_probs=22.3

Q ss_pred             CCcCceeCChhhHhhhchHHHHHhh
Q psy12265         44 SDVKAFQCEYCGKDFARKYQAHSYH   68 (71)
Q Consensus        44 ~~~~~~~C~~c~~~f~~~~~l~~h~   68 (71)
                      +|-+||.|..|++.|..+....+|.
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~   25 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHV   25 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhh
Confidence            4678999999999999999988885

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=1.1e-05  Score=26.93  Aligned_cols=27  Identities=41%  Similarity=0.648  Sum_probs=23.9

Q ss_pred             eecccccccccchhhHHHhHhhhcCCcC
Q psy12265         20 YGCEVCGRHFRQWGDLKYHKASLHSDVK   47 (71)
Q Consensus        20 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~   47 (71)
                      |.|..|+..-..++-|..|++ .|++++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIR-sHT~~R   28 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIR-THTDVR   28 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHH-HTSSCC
T ss_pred             ccccccCcccCCHHHHHHHHH-HhcCCC
Confidence            789999999999999999998 798763

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.82  E-value=6.8e-06  Score=27.52  Aligned_cols=28  Identities=29%  Similarity=0.643  Sum_probs=23.1

Q ss_pred             Cceeccc--ccccccchhhHHHhHhhhcCCc
Q psy12265         18 KPYGCEV--CGRHFRQWGDLKYHKASLHSDV   46 (71)
Q Consensus        18 ~~~~c~~--c~~~~~~~~~l~~h~~~~~~~~   46 (71)
                      +||.|..  |++.|.+.-.|.+|.. .|+|+
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~-thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSL-THTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHH-HHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhc-cccCC
Confidence            5788865  9999999999999987 67764

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.82  E-value=3.4e-06  Score=30.53  Aligned_cols=26  Identities=12%  Similarity=0.543  Sum_probs=22.8

Q ss_pred             cCceeCChhhHhhhchHHHHHhhhcC
Q psy12265         46 VKAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        46 ~~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      .+.|.|.+|++.|.+--+|-.||+.+
T Consensus         3 ~r~~~C~~C~k~F~s~qALGGH~~~H   28 (37)
T d1njqa_           3 PRSYTCSFCKREFRSAQALGGHMNVH   28 (37)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHTT
T ss_pred             CCccCCCCCCCccCCcccccchHhhh
Confidence            35699999999999999999998764

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.80  E-value=1.8e-05  Score=26.37  Aligned_cols=29  Identities=28%  Similarity=0.603  Sum_probs=20.4

Q ss_pred             CCceecccccccccchhhHHHhHhhhcCCc
Q psy12265         17 LKPYGCEVCGRHFRQWGDLKYHKASLHSDV   46 (71)
Q Consensus        17 ~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~   46 (71)
                      +..|.|..|...|.....|..|+. .|+|+
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmv-shtge   30 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMV-SHTGE   30 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHH-HHSSS
T ss_pred             cceEEeHHHHHHHHHHHhheeeee-cccCC
Confidence            345777777777777777777776 56654

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=2.9e-06  Score=28.81  Aligned_cols=24  Identities=17%  Similarity=0.451  Sum_probs=21.3

Q ss_pred             CceeCCh--hhHhhhchHHHHHhhhc
Q psy12265         47 KAFQCEY--CGKDFARKYQAHSYHQI   70 (71)
Q Consensus        47 ~~~~C~~--c~~~f~~~~~l~~h~~~   70 (71)
                      +||.|..  |++.+..++.|+.|++.
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~   26 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKT   26 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHH
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHh
Confidence            5899975  99999999999999984

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=3.8e-06  Score=27.75  Aligned_cols=25  Identities=20%  Similarity=0.406  Sum_probs=22.3

Q ss_pred             CceeCChhhHhhhchHHHHHhhhcC
Q psy12265         47 KAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        47 ~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      +||+|..|...-...+.|..|++++
T Consensus         2 kp~kck~cdyaaadsssl~kh~rih   26 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIH   26 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHS
T ss_pred             CCcccccccchhcchhhHhhhhhcc
Confidence            6899999999989999999998864

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=6.6e-06  Score=29.65  Aligned_cols=23  Identities=26%  Similarity=0.511  Sum_probs=11.2

Q ss_pred             cCceeC--ChhhHhhhchHHHHHhh
Q psy12265         46 VKAFQC--EYCGKDFARKYQAHSYH   68 (71)
Q Consensus        46 ~~~~~C--~~c~~~f~~~~~l~~h~   68 (71)
                      ++||.|  +-|+..|.+...|..|.
T Consensus         4 dkPF~C~~pGC~q~F~neDhL~vHk   28 (38)
T d1bhia_           4 DKPFLCTAPGCGQRFTNEDHLAVHK   28 (38)
T ss_dssp             CCCEECCCTTTCCEESSHHHHHHHH
T ss_pred             CCceecCCCCccccccchHHHHHhh
Confidence            445555  33555555555555443

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.54  E-value=9e-06  Score=26.74  Aligned_cols=20  Identities=30%  Similarity=0.787  Sum_probs=10.4

Q ss_pred             ceecccccccccchhhHHHh
Q psy12265         19 PYGCEVCGRHFRQWGDLKYH   38 (71)
Q Consensus        19 ~~~c~~c~~~~~~~~~l~~h   38 (71)
                      ||.|..||+.+-.+.+|..|
T Consensus         1 pf~c~kcgkcyfrkenlleh   20 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEH   20 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHH
Confidence            34555555555555555444

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=5.2e-05  Score=27.25  Aligned_cols=25  Identities=36%  Similarity=0.719  Sum_probs=22.0

Q ss_pred             CCCceeccc--ccccccchhhHHHhHh
Q psy12265         16 GLKPYGCEV--CGRHFRQWGDLKYHKA   40 (71)
Q Consensus        16 ~~~~~~c~~--c~~~~~~~~~l~~h~~   40 (71)
                      .++||.|..  |+.+|.+...|..|..
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~   29 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKH   29 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhh
Confidence            489999964  9999999999999975

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.45  E-value=1.7e-05  Score=26.44  Aligned_cols=25  Identities=20%  Similarity=0.465  Sum_probs=22.2

Q ss_pred             cCceeCChhhHhhhchHHHHHhhhc
Q psy12265         46 VKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        46 ~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      +..|.|..|...|..+..|..||-.
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvs   26 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVS   26 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHH
T ss_pred             cceEEeHHHHHHHHHHHhheeeeec
Confidence            5679999999999999999999853

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.39  E-value=1.9e-05  Score=26.04  Aligned_cols=21  Identities=29%  Similarity=0.475  Sum_probs=15.7

Q ss_pred             eeCChhhHhhhchHHHHHhhh
Q psy12265         49 FQCEYCGKDFARKYQAHSYHQ   69 (71)
Q Consensus        49 ~~C~~c~~~f~~~~~l~~h~~   69 (71)
                      |.|+.|+-....+++|..|++
T Consensus         3 ~qcphc~tiiarksdlrvhlr   23 (28)
T d2ct1a1           3 FHCPHCDTVIARKSDLGVHLR   23 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHH
T ss_pred             ccCCcchhheeehhhhhHHhh
Confidence            677777777777777777764

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=0.0002  Score=23.84  Aligned_cols=26  Identities=27%  Similarity=0.639  Sum_probs=22.0

Q ss_pred             CceecccccccccchhhHHHhHhhhc
Q psy12265         18 KPYGCEVCGRHFRQWGDLKYHKASLH   43 (71)
Q Consensus        18 ~~~~c~~c~~~~~~~~~l~~h~~~~~   43 (71)
                      +||.|..|.--..+.++|..|+...|
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H   26 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFH   26 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHH
T ss_pred             CCcccceecccccCcchHHHHHHHHc
Confidence            58999999988888999999987544

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=4e-05  Score=25.30  Aligned_cols=22  Identities=23%  Similarity=0.486  Sum_probs=11.8

Q ss_pred             ceecccccccccchhhHHHhHh
Q psy12265         19 PYGCEVCGRHFRQWGDLKYHKA   40 (71)
Q Consensus        19 ~~~c~~c~~~~~~~~~l~~h~~   40 (71)
                      |-+|..|..+-++++.|..|.+
T Consensus         2 pekc~ecsyscsskaalrvh~r   23 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHER   23 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHG
T ss_pred             CccCcccccccCcHHHHHHhhc
Confidence            3455555555555555555544

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.00048  Score=23.94  Aligned_cols=26  Identities=19%  Similarity=0.546  Sum_probs=21.3

Q ss_pred             ceecccccccccchhhHHHhHhhhcCC
Q psy12265         19 PYGCEVCGRHFRQWGDLKYHKASLHSD   45 (71)
Q Consensus        19 ~~~c~~c~~~~~~~~~l~~h~~~~~~~   45 (71)
                      .|+|..|++.|.....+.+|.. ...|
T Consensus         4 afvcskcgktftrrntm~rha~-nc~g   29 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHAD-NCAG   29 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHH-HCCC
T ss_pred             eeeecccccchhcchHHHHHhh-hcCC
Confidence            4899999999999999999875 3443

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.00069  Score=22.22  Aligned_cols=25  Identities=16%  Similarity=0.276  Sum_probs=20.2

Q ss_pred             CceeCChhhHhhhchHHHHHhhhcC
Q psy12265         47 KAFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        47 ~~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      .|.+|+.|..+.++++.|..|.+++
T Consensus         1 hpekc~ecsyscsskaalrvh~rih   25 (28)
T d1x5wa1           1 HPEKCSECSYSCSSKAALRIHERIH   25 (28)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHGGG
T ss_pred             CCccCcccccccCcHHHHHHhhccc
Confidence            0347889999999999999998864

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.71  E-value=9.1e-05  Score=30.24  Aligned_cols=20  Identities=35%  Similarity=0.524  Sum_probs=10.7

Q ss_pred             eecccccccccchhhHHHhH
Q psy12265         20 YGCEVCGRHFRQWGDLKYHK   39 (71)
Q Consensus        20 ~~c~~c~~~~~~~~~l~~h~   39 (71)
                      |-|..|++.|.+...|..|+
T Consensus        16 fYCv~C~K~F~se~~l~~H~   35 (67)
T d1zr9a1          16 HRCLACARYFIDSTNLKTHF   35 (67)
T ss_dssp             SEETTTTEECSSHHHHHHHT
T ss_pred             EecccccCccCCHHHHHHHH
Confidence            45555555555555555554

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=0.00015  Score=27.31  Aligned_cols=21  Identities=29%  Similarity=0.691  Sum_probs=13.4

Q ss_pred             ceecccccccccchhhHHHhH
Q psy12265         19 PYGCEVCGRHFRQWGDLKYHK   39 (71)
Q Consensus        19 ~~~c~~c~~~~~~~~~l~~h~   39 (71)
                      .+.|..|++.|+....|.+|.
T Consensus         6 l~pCG~CgK~Ftd~~rLr~HE   26 (53)
T d2eppa1           6 ILPCGLCGKVFTDANRLRQHE   26 (53)
T ss_dssp             CCCCTTTCCCCSCHHHHHHHH
T ss_pred             eeeccccccccCCHHHHhHhH
Confidence            356666666666666666654

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.49  E-value=0.00085  Score=23.08  Aligned_cols=22  Identities=32%  Similarity=0.573  Sum_probs=19.3

Q ss_pred             ceecccccccccchhhHHHhHh
Q psy12265         19 PYGCEVCGRHFRQWGDLKYHKA   40 (71)
Q Consensus        19 ~~~c~~c~~~~~~~~~l~~h~~   40 (71)
                      .|.|..||-.|++.+.|..|+.
T Consensus         8 rf~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           8 RFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CCBCTTTCCBCSCHHHHHHHTT
T ss_pred             ceeccccceeecChhHHHhhhh
Confidence            4899999999999999998863

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=96.44  E-value=0.00039  Score=22.24  Aligned_cols=20  Identities=30%  Similarity=0.708  Sum_probs=9.9

Q ss_pred             eeCChhhHhhhchHHHHHhh
Q psy12265         49 FQCEYCGKDFARKYQAHSYH   68 (71)
Q Consensus        49 ~~C~~c~~~f~~~~~l~~h~   68 (71)
                      |.|+.|-+.|.++.++..|.
T Consensus         2 ypcp~cfkeftrkdnm~ahv   21 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHV   21 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEE
Confidence            44555555555555444443

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.00087  Score=26.83  Aligned_cols=36  Identities=19%  Similarity=0.616  Sum_probs=26.4

Q ss_pred             CCceecccccccccchhhHHHhHhhhcCCcCceeCChhhH
Q psy12265         17 LKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGK   56 (71)
Q Consensus        17 ~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~   56 (71)
                      ...|.|+.|++.|+.......    .......|.|..|+-
T Consensus        12 ~~~y~Cp~C~~~ys~Lda~~L----~d~~~~~F~C~~C~~   47 (62)
T d1vd4a_          12 RASFKCPVCSSTFTDLEANQL----FDPMTGTFRCTFCHT   47 (62)
T ss_dssp             SSEEECSSSCCEEEHHHHHHH----EETTTTEEBCSSSCC
T ss_pred             CCceECCCCCCCcchhhHHHh----cCcCCCeEEecCCCC
Confidence            456999999999987666442    344456799999964

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=96.22  E-value=0.00043  Score=25.96  Aligned_cols=25  Identities=8%  Similarity=0.170  Sum_probs=18.0

Q ss_pred             cCceeCChhhHhhhchHHHHHhhhc
Q psy12265         46 VKAFQCEYCGKDFARKYQAHSYHQI   70 (71)
Q Consensus        46 ~~~~~C~~c~~~f~~~~~l~~h~~~   70 (71)
                      +.|-.|+.|+....+..+|.+|..+
T Consensus        22 ~qpatcpic~avirqsrnlrrhlel   46 (54)
T d1yuja_          22 EQPATCPICYAVIRQSRNLRRHLEL   46 (54)
T ss_dssp             SCCEECTTTCCEESSHHHHHHHHHH
T ss_pred             cCCCCCchHHHHHHHHHHHHHHHHH
Confidence            5567788887777777777777643

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.20  E-value=0.0016  Score=24.43  Aligned_cols=22  Identities=23%  Similarity=0.526  Sum_probs=18.6

Q ss_pred             ceeCChhhHhhhchHHHHHhhh
Q psy12265         48 AFQCEYCGKDFARKYQAHSYHQ   69 (71)
Q Consensus        48 ~~~C~~c~~~f~~~~~l~~h~~   69 (71)
                      .|.|..|++.|.....|..|..
T Consensus         6 l~pCG~CgK~Ftd~~rLr~HEA   27 (53)
T d2eppa1           6 ILPCGLCGKVFTDANRLRQHEA   27 (53)
T ss_dssp             CCCCTTTCCCCSCHHHHHHHHH
T ss_pred             eeeccccccccCCHHHHhHhHH
Confidence            0479999999999999999865

>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Nigerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=95.81  E-value=0.0015  Score=23.33  Aligned_cols=27  Identities=26%  Similarity=0.451  Sum_probs=19.3

Q ss_pred             CCCceecccccccccchhhHHHhHhhhcCCcCceeCChhhH
Q psy12265         16 GLKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGK   56 (71)
Q Consensus        16 ~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~   56 (71)
                      .++-|.|..||..              +.++.|-.|++|+.
T Consensus         2 ~~~~~vC~vCGyi--------------~~g~~Pe~CPvCg~   28 (36)
T d1yuza2           2 DDKFHLCPICGYI--------------HKGEDFEKCPICFR   28 (36)
T ss_dssp             SCCEEECSSSCCE--------------EESSCCSBCTTTCC
T ss_pred             CCCEEECCCCCCE--------------eeCCCCCcCCCCCC
Confidence            3567999999843              33456778999974

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.39  E-value=0.0034  Score=21.83  Aligned_cols=19  Identities=26%  Similarity=0.214  Sum_probs=14.3

Q ss_pred             ccccchhhHHHhHhhhcCCc
Q psy12265         27 RHFRQWGDLKYHKASLHSDV   46 (71)
Q Consensus        27 ~~~~~~~~l~~h~~~~~~~~   46 (71)
                      +.|.....|..|++ .|+||
T Consensus        15 ~pf~a~YkLv~H~R-~HTgE   33 (33)
T d2glia2          15 RPFKAQYMLVVHMR-RHTGE   33 (33)
T ss_dssp             CCCSSHHHHHHHTH-HHHCC
T ss_pred             CcchhHHHHHHHHh-hcCCC
Confidence            56777788888887 67764

>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.16  E-value=0.0028  Score=22.69  Aligned_cols=26  Identities=35%  Similarity=0.713  Sum_probs=18.5

Q ss_pred             CCceecccccccccchhhHHHhHhhhcCCcCceeCChhhH
Q psy12265         17 LKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGK   56 (71)
Q Consensus        17 ~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~   56 (71)
                      ++.|.|..||..              +.++.|-.|++|+.
T Consensus         3 ~~~~~C~vCG~i--------------~~g~~P~~CPvCg~   28 (37)
T d1nnqa2           3 KKVYICPICGYT--------------AVDEAPEYCPVCGA   28 (37)
T ss_dssp             SCEEECTTTCCE--------------EESCCCSBCTTTCC
T ss_pred             CcEEECCCCCCE--------------ecCCCCCcCCCCCC
Confidence            356899999844              23456778999975

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.70  E-value=0.0064  Score=24.61  Aligned_cols=24  Identities=13%  Similarity=0.340  Sum_probs=20.2

Q ss_pred             ceeCChhhHhhhchHHHHHhhhcC
Q psy12265         48 AFQCEYCGKDFARKYQAHSYHQIR   71 (71)
Q Consensus        48 ~~~C~~c~~~f~~~~~l~~h~~~~   71 (71)
                      .|-|..|++.|.+...|..|++.+
T Consensus        15 qfYCv~C~K~F~se~~l~~H~ksK   38 (67)
T d1zr9a1          15 LHRCLACARYFIDSTNLKTHFRSK   38 (67)
T ss_dssp             CSEETTTTEECSSHHHHHHHTTCH
T ss_pred             EEecccccCccCCHHHHHHHHccc
Confidence            046999999999999999998753

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=94.47  E-value=0.028  Score=19.41  Aligned_cols=28  Identities=29%  Similarity=0.663  Sum_probs=21.1

Q ss_pred             CCCceecccccccccchhhHHHhHhhhc
Q psy12265         16 GLKPYGCEVCGRHFRQWGDLKYHKASLH   43 (71)
Q Consensus        16 ~~~~~~c~~c~~~~~~~~~l~~h~~~~~   43 (71)
                      ++..|.|..|.+.+...+++-+|-...|
T Consensus         5 g~~~yRC~~C~r~YTHISNFCRHyvtSH   32 (37)
T d2drpa1           5 GEHTYRCKVCSRVYTHISNFCRHYVTSH   32 (37)
T ss_dssp             ETTEEECTTTCCEESSHHHHHHHHHHHS
T ss_pred             cCcEEEeehhhHHHHHHHHHHHHHHhhc
Confidence            4456888888888888888888765444

>d1m36a_ g.37.1.2 (A:) Monocytic leukemia zinc finger protein Moz {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: Monocytic leukemia zinc finger protein Moz
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.29  E-value=0.0065  Score=21.10  Aligned_cols=22  Identities=23%  Similarity=0.452  Sum_probs=13.5

Q ss_pred             CceeCChhhHhhhchHHHHHhh
Q psy12265         47 KAFQCEYCGKDFARKYQAHSYH   68 (71)
Q Consensus        47 ~~~~C~~c~~~f~~~~~l~~h~   68 (71)
                      +.|.|+.|.+-......|.+|+
T Consensus         6 kLyiCEfCLKYmks~~~l~RH~   27 (33)
T d1m36a_           6 KLYLCEFCLKYMKSRTILQQHM   27 (33)
T ss_dssp             CCEECSSSCCEESCHHHHHHHH
T ss_pred             eeeeehhhhhhhCCHHHHHHHH
Confidence            3466666666666666666665

>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger homeobox protein 4, ZFHX4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.72  E-value=0.007  Score=22.65  Aligned_cols=20  Identities=20%  Similarity=0.531  Sum_probs=12.6

Q ss_pred             eecccccccccchhhHHHhH
Q psy12265         20 YGCEVCGRHFRQWGDLKYHK   39 (71)
Q Consensus        20 ~~c~~c~~~~~~~~~l~~h~   39 (71)
                      -.|..|+..|+...++..|+
T Consensus         7 ~eC~lC~vKYs~~~SvrdHi   26 (48)
T d2yrka1           7 PECTLCGVKYSARLSIRDHI   26 (48)
T ss_dssp             SCCTTTTCCCCSSSCHHHHH
T ss_pred             ccCcccceeeeeecchHhhh
Confidence            46666666666666666664

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=92.65  E-value=0.038  Score=17.71  Aligned_cols=17  Identities=35%  Similarity=0.800  Sum_probs=10.7

Q ss_pred             cccccccchhhHHHhHh
Q psy12265         24 VCGRHFRQWGDLKYHKA   40 (71)
Q Consensus        24 ~c~~~~~~~~~l~~h~~   40 (71)
                      -|++.|..-..|..|+.
T Consensus         8 ~c~kafkkhnqlkvhqf   24 (28)
T d2j7ja1           8 NCGKAFKKHNQLKVHQF   24 (28)
T ss_dssp             TCCCEESSHHHHHHHHH
T ss_pred             CchHHHhhccceEEEee
Confidence            36666666666666654

>d2ak3a2 g.41.2.1 (A:125-161) Microbial and mitochondrial ADK, insert "zinc finger" domain {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=92.11  E-value=0.015  Score=20.71  Aligned_cols=33  Identities=9%  Similarity=0.143  Sum_probs=20.3

Q ss_pred             eecccccccccchhhHHHhHhhhcCCcCceeCChhhHhhhch
Q psy12265         20 YGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFARK   61 (71)
Q Consensus        20 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f~~~   61 (71)
                      +.|..||..|        |.. .......-.|..||..+.++
T Consensus         3 ~vc~~cG~~Y--------h~~-~~pPk~~g~CD~cg~~L~qR   35 (37)
T d2ak3a2           3 WIHPGSGRVY--------NIE-FNPPKTMGIDDLTGEPLVQR   35 (37)
T ss_dssp             EEETTTTEEE--------ETT-TBCCSSTTBCTTTCCBCBCC
T ss_pred             eeeCCcCChh--------hhc-cCCccccCCccCCCCcCEec
Confidence            5677787766        333 34455566788887655443

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.73  E-value=0.093  Score=17.15  Aligned_cols=24  Identities=33%  Similarity=0.891  Sum_probs=18.4

Q ss_pred             eecccccccccchhhHHHhHhhhc
Q psy12265         20 YGCEVCGRHFRQWGDLKYHKASLH   43 (71)
Q Consensus        20 ~~c~~c~~~~~~~~~l~~h~~~~~   43 (71)
                      |.|..|++...+...++-|....|
T Consensus         3 ftc~hcgkqlks~~gmkyhvmadh   26 (30)
T d2ctda2           3 FTCHHCGKQLRSLAGMKYHVMANH   26 (30)
T ss_dssp             CCCSSSCCCCSSHHHHHHHHHHHT
T ss_pred             eechhHHHHHhhccCceEEEeecc
Confidence            678889988888888887765333

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.34  E-value=0.042  Score=21.89  Aligned_cols=26  Identities=23%  Similarity=0.574  Sum_probs=21.0

Q ss_pred             CCceecccccccccchhhHHHhHhhhc
Q psy12265         17 LKPYGCEVCGRHFRQWGDLKYHKASLH   43 (71)
Q Consensus        17 ~~~~~c~~c~~~~~~~~~l~~h~~~~~   43 (71)
                      ...|.|..|+..|.+...|..|.. .|
T Consensus        16 s~~yQC~HCd~K~~s~~el~~hl~-~h   41 (75)
T d1x6fa1          16 NSTYQCKHCDSKLQSTAELTSHLN-IH   41 (75)
T ss_dssp             CSCEECSSSCCEESSHHHHHHHHH-HH
T ss_pred             CceeeechhHHHHhhHHHHHHHHH-hc
Confidence            345999999999998888888875 44

>d1wjpa3 g.37.1.1 (A:67-107) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 295, ZNF295
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.92  E-value=0.027  Score=19.64  Aligned_cols=20  Identities=15%  Similarity=0.462  Sum_probs=14.7

Q ss_pred             eeCChhhHhhhchHHHHHhh
Q psy12265         49 FQCEYCGKDFARKYQAHSYH   68 (71)
Q Consensus        49 ~~C~~c~~~f~~~~~l~~h~   68 (71)
                      ..|.+|-++|.....+.+|+
T Consensus         4 ltclecmrtfkssfsiwrhq   23 (41)
T d1wjpa3           4 LTCLECMRTFKSSFSIWRHQ   23 (41)
T ss_dssp             GEEGGGTEECSSHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHhh
Confidence            35777877887777777775

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.85  E-value=0.16  Score=16.52  Aligned_cols=19  Identities=37%  Similarity=0.499  Sum_probs=14.7

Q ss_pred             ccccccccchhhHHHhHhh
Q psy12265         23 EVCGRHFRQWGDLKYHKAS   41 (71)
Q Consensus        23 ~~c~~~~~~~~~l~~h~~~   41 (71)
                      +-|++.|+....|.-|..-
T Consensus         6 ~gc~kifsnrqylnhh~ky   24 (30)
T d2dlka1           6 PGCGRIFSNRQYLNHHKKY   24 (30)
T ss_dssp             TTTCCEESSHHHHHHHHHH
T ss_pred             CCchhhhccHHHHHhHHHH
Confidence            3489999998888877653

>d1fu9a_ g.37.1.2 (A:) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=89.44  E-value=0.21  Score=17.33  Aligned_cols=21  Identities=24%  Similarity=0.338  Sum_probs=17.9

Q ss_pred             eecccccccccchhhHHHhHh
Q psy12265         20 YGCEVCGRHFRQWGDLKYHKA   40 (71)
Q Consensus        20 ~~c~~c~~~~~~~~~l~~h~~   40 (71)
                      --|..|+-.|.....+..|.+
T Consensus         9 rYC~~CDI~Fn~~~T~~aHKk   29 (36)
T d1fu9a_           9 KYCSTCDISFNYVKTYLAHKQ   29 (36)
T ss_dssp             SEETTTTEECSSHHHHHHHHH
T ss_pred             hHHhhCCceehhHHHHHHHHH
Confidence            468889999999999999875

>d1akya2 g.41.2.1 (A:131-168) Microbial and mitochondrial ADK, insert "zinc finger" domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.57  E-value=0.046  Score=19.49  Aligned_cols=32  Identities=16%  Similarity=0.342  Sum_probs=18.7

Q ss_pred             eecccccccccchhhHHHhHhhhcCCcCceeCChhhHhhhc
Q psy12265         20 YGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDFAR   60 (71)
Q Consensus        20 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f~~   60 (71)
                      ..|..|+..|        |.. ..+....-.|..||..+.+
T Consensus         3 r~C~~cG~~Y--------h~~-~~ppk~~g~CD~cg~~L~q   34 (38)
T d1akya2           3 LIHPASGRSY--------HKI-FNPPKEDMKDDVTGEALVQ   34 (38)
T ss_dssp             EECTTTCCEE--------ETT-TBCCSSTTBCTTTCCBCBC
T ss_pred             cCCcCccchh--------hhh-ccCcCcCCccCCCCCEeee
Confidence            4677777765        322 3444455578888765444

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=87.32  E-value=0.27  Score=16.25  Aligned_cols=26  Identities=27%  Similarity=0.533  Sum_probs=14.2

Q ss_pred             ceecc--cccccccchhhHHHhHhhhcCC
Q psy12265         19 PYGCE--VCGRHFRQWGDLKYHKASLHSD   45 (71)
Q Consensus        19 ~~~c~--~c~~~~~~~~~l~~h~~~~~~~   45 (71)
                      .|.|.  .|+..|.....|..|.- .|+|
T Consensus         3 ~~iCsf~dC~A~ynk~wkL~AHLc-kHTG   30 (31)
T d1tf3a1           3 RYICSFADCGAAYNKNWKLQAHLS-KHTG   30 (31)
T ss_dssp             CEECSSGGGCCEESSHHHHHHHHH-HHHC
T ss_pred             ceEeeCCCcchhhccchhhhHHhh-hhcC
Confidence            35554  36666666666666654 3444

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=87.12  E-value=0.27  Score=15.97  Aligned_cols=25  Identities=24%  Similarity=0.589  Sum_probs=17.5

Q ss_pred             ceecc--cccccccchhhHHHhHhhhc
Q psy12265         19 PYGCE--VCGRHFRQWGDLKYHKASLH   43 (71)
Q Consensus        19 ~~~c~--~c~~~~~~~~~l~~h~~~~~   43 (71)
                      .|.|.  .|+-.|..++++..|....|
T Consensus         2 nf~cdsd~cdl~fttkanmkkhfnrfh   28 (31)
T d1tf3a3           2 NFTCDSDGCDLRFTTKANMKKHFNRFH   28 (31)
T ss_dssp             CEECSSSSCCCEESSHHHHHHHHHHHT
T ss_pred             CccccCCCcceEEeehHHHHHHHhhhc
Confidence            45664  48888888888888764333

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.48  E-value=0.34  Score=15.58  Aligned_cols=16  Identities=25%  Similarity=0.571  Sum_probs=13.5

Q ss_pred             ccccccchhhHHHhHh
Q psy12265         25 CGRHFRQWGDLKYHKA   40 (71)
Q Consensus        25 c~~~~~~~~~l~~h~~   40 (71)
                      |.+.|...+.+..|+-
T Consensus         9 C~K~Frd~saMRKHlh   24 (28)
T d1ubdc1           9 CTKMFRDNSAMRKHLH   24 (28)
T ss_dssp             CCCEESSHHHHHHHHG
T ss_pred             HHHHhhchHHHHHHhh
Confidence            8899999988888864

>d1wjpa2 g.37.1.1 (A:43-66) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 295, ZNF295
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.69  E-value=0.14  Score=16.10  Aligned_cols=12  Identities=33%  Similarity=0.819  Sum_probs=5.6

Q ss_pred             CChhhHhhhchH
Q psy12265         51 CEYCGKDFARKY   62 (71)
Q Consensus        51 C~~c~~~f~~~~   62 (71)
                      |++|.-.|..+.
T Consensus         3 cpycslrf~sp~   14 (26)
T d1wjpa2           3 CPYCSLRFFSPE   14 (26)
T ss_dssp             CTTTCCCBSSHH
T ss_pred             CCcceeeeCCHH
Confidence            445544444443

>d1zina2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=83.38  E-value=0.22  Score=17.26  Aligned_cols=29  Identities=28%  Similarity=0.687  Sum_probs=16.8

Q ss_pred             eecccccccccchhhHHHhHhhhcCCcCceeCChhhHh
Q psy12265         20 YGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKD   57 (71)
Q Consensus        20 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~   57 (71)
                      +.|..|+..|-        .. ..+....-.|..||..
T Consensus         3 r~C~~CG~~Yh--------~~-~~pPk~~g~CD~cG~~   31 (35)
T d1zina2           3 RICRNCGATYH--------LI-FHPPAKPGVCDKCGGE   31 (35)
T ss_dssp             EEETTTCCEEE--------TT-TBCCSSTTBCTTTCCB
T ss_pred             cCCcCcCchhc--------cc-cCCCCCCCcCCCCCCC
Confidence            46777776652        22 3444555677777643

>d1twfl_ g.41.9.2 (L:) RBP12 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: RNA polymerase subunits
family: RBP12 subunit of RNA polymerase II
domain: RBP12 subunit of RNA polymerase II
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.88  E-value=0.52  Score=17.35  Aligned_cols=30  Identities=23%  Similarity=0.608  Sum_probs=18.7

Q ss_pred             CCceecccccccccchhhHHHhHhhhcCCcCceeCChhhHhh
Q psy12265         17 LKPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGKDF   58 (71)
Q Consensus        17 ~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~~f   58 (71)
                      ...|.|..|+....-           . ...+.+|..||...
T Consensus         2 ~v~YiCgeCg~~~~l-----------~-~~d~irCreCG~RI   31 (46)
T d1twfl_           2 TLKYICAECSSKLSL-----------S-RTDAVRCKDCGHRI   31 (46)
T ss_dssp             CCCEECSSSCCEECC-----------C-TTSTTCCSSSCCCC
T ss_pred             ceEEEcccCCCceEe-----------C-CCCcEEeccCCcEE
Confidence            356889999865431           1 12356888888543

>d1s3ga2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus globisporus [TaxId: 1459]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Bacillus globisporus [TaxId: 1459]

Probab=81.38  E-value=0.28  Score=16.99  Aligned_cols=28  Identities=21%  Similarity=0.481  Sum_probs=16.2

Q ss_pred             eecccccccccchhhHHHhHhhhcCCcCceeCChhhH
Q psy12265         20 YGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGK   56 (71)
Q Consensus        20 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~   56 (71)
                      +.|..|+..|-        .. .......-.|..|+.
T Consensus         3 ~~C~~CG~~Yh--------~~-~~pPk~~g~CD~cg~   30 (35)
T d1s3ga2           3 RICKVCGTSYH--------LL-FNPPQVEGKCDKDGG   30 (35)
T ss_dssp             EEETTTCCEEE--------TT-TBCCSBTTBCTTTCC
T ss_pred             cCCcCcCchhc--------cc-cCCCCCCCccCCCCC
Confidence            46777776652        22 344445556777764

>d1zu1a2 g.37.1.4 (A:74-128) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=81.13  E-value=0.15  Score=19.59  Aligned_cols=18  Identities=28%  Similarity=0.473  Sum_probs=12.9

Q ss_pred             eCChhhHhhhchHHHHHh
Q psy12265         50 QCEYCGKDFARKYQAHSY   67 (71)
Q Consensus        50 ~C~~c~~~f~~~~~l~~h   67 (71)
                      -|..|...|++....+.|
T Consensus        23 ~C~lCn~~Fns~~~AqsH   40 (55)
T d1zu1a2          23 CCPVCNMTFSSPVVAESH   40 (55)
T ss_dssp             EETTTTEECSSHHHHHHH
T ss_pred             hhhhhhcccCCHHHHHHH
Confidence            477787777777766665

>d1lkoa2 g.41.5.1 (A:148-191) Rubrerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=80.50  E-value=0.16  Score=18.64  Aligned_cols=26  Identities=19%  Similarity=0.511  Sum_probs=16.6

Q ss_pred             CceecccccccccchhhHHHhHhhhcCCcCceeCChhhH
Q psy12265         18 KPYGCEVCGRHFRQWGDLKYHKASLHSDVKAFQCEYCGK   56 (71)
Q Consensus        18 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~C~~c~~   56 (71)
                      ..|.|..||..+.             ..+.|-.|+.|+.
T Consensus         7 ~~W~C~~CGyi~~-------------g~~aP~~CPvC~~   32 (44)
T d1lkoa2           7 TKWRCRNCGYVHE-------------GTGAPELCPACAH   32 (44)
T ss_dssp             EEEEETTTCCEEE-------------EEECCSBCTTTCC
T ss_pred             eEEEcCCCCcEEE-------------CCCCCCcCCCCCC
Confidence            3588999985432             1234557999875

>d1wira_ g.37.1.5 (A:) Protein arginine N-methyltransferase 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: variant C2H2 finger
domain: Protein arginine N-methyltransferase 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.13  E-value=1.1  Score=19.97  Aligned_cols=27  Identities=22%  Similarity=0.251  Sum_probs=22.7

Q ss_pred             CCceecccccccccchhhHHHhHhhhc
Q psy12265         17 LKPYGCEVCGRHFRQWGDLKYHKASLH   43 (71)
Q Consensus        17 ~~~~~c~~c~~~~~~~~~l~~h~~~~~   43 (71)
                      +.+-.|-.|...|.+...+..|++..|
T Consensus        13 ~~~~~CLFCd~~f~s~~~~l~H~k~~H   39 (121)
T d1wira_          13 RQHTPCLFCDRLFASAEETFSHCKLEH   39 (121)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHSS
T ss_pred             cccceecccCCccCCHHHHHHHHHHhh
Confidence            456889999999999999999997544