Psyllid ID: psy12508

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110---
Protein Sequence
MANPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQLL
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHcccccccEEEEEcccccccEEEEEEEcccEEEEEEEEcccccEEEEcccccccccHHHHHHHHHHccccccccccEEEccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHcccEEEEccHHHHHHHHHHccccEEEEEEcccccccEEEEEEEccEEEEEEcEEcccccEEEEcccccccccHHHHHHHHcccccccccHHHHHHcccHHHHHc
Coil and Loop (DISEMBL)
manpkpldqrnwyhgsvtrHEAENILrnsnegsylvrnsesnrpdyslsLKSARGFMHmkiqrdpdtgkfilgqfsapfdsvpEMIQHFAENRLPILGAEHMCLLHPMIEQLL
Flexible Loop (DISEMBL)
manpkpldqrnwyhgsvtrheaenilrnsnegsylvrnsesnrpdySLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQLL
Low Complexity Region (SEG)
MANPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQLL
Disordered region (IsUnstruct)
*****************************************************************DTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMI****
Disordered Region (DISOPRED)
****KPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQLL
Disordered Region (DISEMBL)
MANPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQLL
Disordered Region (DISPRO)
*ANPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQLL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MANPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	113	2.2.26 [Sep-21-2011]
Q8CG80	238	SH2 domain-containing ada	yes	N/A	0.946	0.449	0.555	5e-30
Q7M4L6	423	SH2 domain-containing ada	yes	N/A	0.946	0.252	0.555	6e-30
Q6PD21	503	SH2 domain-containing ada	no	N/A	0.938	0.210	0.537	5e-29
Q15464	509	SH2 domain-containing ada	no	N/A	0.938	0.208	0.527	2e-28
Q96IW2	340	SH2 domain-containing ada	no	N/A	0.929	0.308	0.481	4e-24
Q8BSD5	492	SH2 domain-containing ada	no	N/A	0.893	0.205	0.470	5e-22
Q5VZ18	495	SH2 domain-containing ada	no	N/A	0.938	0.214	0.448	6e-22
O88834	343	SH2 domain-containing ada	no	N/A	0.902	0.297	0.466	3e-21
Q6YKA8	211	Protein E(sev)2B OS=Droso	N/A	N/A	0.743	0.398	0.379	4e-11
Q08012	211	Protein enhancer of seven	no	N/A	0.743	0.398	0.379	4e-11

>sp|Q8CG80|SHF_MOUSE SH2 domain-containing adapter protein F OS=Mus musculus GN=Shf PE=1 SV=2

 Score =  129 bits (324), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 60/108 (55%), Positives = 84/108 (77%), Gaps = 1/108 (0%)

Query: 6   PLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDP 65
           PL+ + WYHG+++R +AEN+LR   E SYLVRNSE+++ D+SLSLKS++GFMHMK+ R  
Sbjct: 132 PLENQVWYHGAISRTDAENLLRLCKEASYLVRNSETSKNDFSLSLKSSQGFMHMKLSRTK 191

Query: 66  DTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQLL 113
           +  K++LGQ S PF SVPE++ H+A  +LPI GAEHM LL+P+  + L
Sbjct: 192 EH-KYVLGQNSPPFSSVPEIVHHYASRKLPIKGAEHMSLLYPVAIRTL 238

Adapter protein which may play a role in the regulation of apoptosis in response to PDGF.
Mus musculus (taxid: 10090)

>sp|Q7M4L6|SHF_HUMAN SH2 domain-containing adapter protein F OS=Homo sapiens GN=SHF PE=1 SV=2

 Score =  129 bits (324), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 60/108 (55%), Positives = 84/108 (77%), Gaps = 1/108 (0%)

Query: 6   PLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDP 65
           PL+ + WYHG+++R +AEN+LR   E SYLVRNSE+++ D+SLSLKS++GFMHMK+ R  
Sbjct: 317 PLENQVWYHGAISRTDAENLLRLCKEASYLVRNSETSKNDFSLSLKSSQGFMHMKLSRTK 376

Query: 66  DTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQLL 113
           +  K++LGQ S PF SVPE++ H+A  +LPI GAEHM LL+P+  + L
Sbjct: 377 EH-KYVLGQNSPPFSSVPEIVHHYASRKLPIKGAEHMSLLYPVAIRTL 423

Adapter protein which may play a role in the regulation of apoptosis in response to PDGF.

Homo sapiens (taxid: 9606)

>sp|Q6PD21|SHB_MOUSE SH2 domain-containing adapter protein B OS=Mus musculus GN=Shb PE=1 SV=2

 Score =  125 bits (315), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 58/108 (53%), Positives = 84/108 (77%), Gaps = 2/108 (1%)

Query: 6   PLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDP 65
           PL+++ WYHG+++R +AEN+LR   E SYLVRNS++++ DYSLSLKS +GFMHMK+ +  
Sbjct: 398 PLEKQIWYHGAISRSDAENLLRLCKECSYLVRNSQTSKHDYSLSLKSNQGFMHMKLAKTK 457

Query: 66  DTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQLL 113
           +  K++LGQ S PFDSVPE+I ++   +LPI GAEH+ LL+P+  + L
Sbjct: 458 E--KYVLGQNSPPFDSVPEVIHYYTTRKLPIKGAEHLSLLYPVAVRTL 503

Adapter protein which regulates several signal transduction cascades by linking activated receptors to downstream signaling components. May play a role in angiogenesis by regulating FGFR1, VEGFR2 and PDGFR signaling. May also play a role in T-cell antigen receptor/TCR signaling, interleukin-2 signaling, apoptosis and neuronal cells differentiation by mediating basic-FGF and NGF-induced signaling cascades. May also regulate IRS1 and IRS2 signaling in insulin-producing cells.

Mus musculus (taxid: 10090)

>sp|Q15464|SHB_HUMAN SH2 domain-containing adapter protein B OS=Homo sapiens GN=SHB PE=1 SV=2

 Score =  124 bits (311), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 57/108 (52%), Positives = 84/108 (77%), Gaps = 2/108 (1%)

Query: 6   PLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDP 65
           PL+++ WYHG+++R +AEN+LR   E SYLVRNS++++ DYSLSL+S +GFMHMK+ +  
Sbjct: 404 PLEKQIWYHGAISRGDAENLLRLCKECSYLVRNSQTSKHDYSLSLRSNQGFMHMKLAKTK 463

Query: 66  DTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQLL 113
           +  K++LGQ S PFDSVPE+I ++   +LPI GAEH+ LL+P+  + L
Sbjct: 464 E--KYVLGQNSPPFDSVPEVIHYYTTRKLPIKGAEHLSLLYPVAVRTL 509

Adapter protein which regulates several signal transduction cascades by linking activated receptors to downstream signaling components. May play a role in angiogenesis by regulating FGFR1, VEGFR2 and PDGFR signaling. May also play a role in T-cell antigen receptor/TCR signaling, interleukin-2 signaling, apoptosis and neuronal cells differentiation by mediating basic-FGF and NGF-induced signaling cascades. May also regulate IRS1 and IRS2 signaling in insulin-producing cells.

Homo sapiens (taxid: 9606)

>sp|Q96IW2|SHD_HUMAN SH2 domain-containing adapter protein D OS=Homo sapiens GN=SHD PE=2 SV=1

 Score =  110 bits (274), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 51/106 (48%), Positives = 77/106 (72%), Gaps = 1/106 (0%)

Query: 6   PLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDP 65
           PL+++ W+HG + R +AE++L    EGSYLVR SE+N  D SLSL+S++GF+H+K  R  
Sbjct: 234 PLEKQPWFHGPLNRADAESLLSLCKEGSYLVRLSETNPQDCSLSLRSSQGFLHLKFARTR 293

Query: 66  DTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQ 111
           +  + +LGQ S PF SVPE++ H++   LP+ GAEH+ LL+P++ Q
Sbjct: 294 EN-QVVLGQHSGPFPSVPELVLHYSSRPLPVQGAEHLALLYPVVTQ 338

May function as an adapter protein.

Homo sapiens (taxid: 9606)

>sp|Q8BSD5|SHE_MOUSE SH2 domain-containing adapter protein E OS=Mus musculus GN=She PE=2 SV=1

 Score =  102 bits (255), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 48/102 (47%), Positives = 74/102 (72%), Gaps = 1/102 (0%)

Query: 7   LDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPD 66
           L+++ WYHGS++R EAE+ L+   E +YLVRNSES    YS++LK+++G +H+ + +  D
Sbjct: 388 LEKQPWYHGSISRAEAESRLQPCKEAAYLVRNSESGNSKYSIALKTSQGCVHIIVAQTKD 447

Query: 67  TGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPM 108
             K+ L Q SA FDS+PE++ +++  +LP  GAEHM LLHP+
Sbjct: 448 N-KYTLNQTSAVFDSIPEVVHYYSNAKLPFKGAEHMTLLHPV 488

Mus musculus (taxid: 10090)

>sp|Q5VZ18|SHE_HUMAN SH2 domain-containing adapter protein E OS=Homo sapiens GN=SHE PE=2 SV=1

 Score =  102 bits (255), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 48/107 (44%), Positives = 76/107 (71%), Gaps = 1/107 (0%)

Query: 6   PLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDP 65
           PL+++ WYHG+++R EAE+ L+   E  YLVRNSES    YS++LK+++G +H+ + +  
Sbjct: 389 PLEKQPWYHGAISRAEAESRLQPCKEAGYLVRNSESGNSRYSIALKTSQGCVHIIVAQTK 448

Query: 66  DTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQL 112
           D  K+ L Q SA FDS+PE++ +++  +LP  GAEHM LL+P+  +L
Sbjct: 449 DN-KYTLNQTSAVFDSIPEVVHYYSNEKLPFKGAEHMTLLYPVHSKL 494

Homo sapiens (taxid: 9606)

>sp|O88834|SHD_MOUSE SH2 domain-containing adapter protein D OS=Mus musculus GN=Shd PE=1 SV=1

 Score =  100 bits (248), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 48/103 (46%), Positives = 71/103 (68%), Gaps = 1/103 (0%)

Query: 7   LDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPD 66
           L+++ W+HG ++R EAEN+L    EGSYLVR SE+   D  LSL+S +G MH+K  R  +
Sbjct: 220 LEKQPWFHGPLSRAEAENLLSLCKEGSYLVRLSETRAQDCILSLRSNQGSMHLKFARTRE 279

Query: 67  TGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMI 109
             + +LGQ S PF S+PE++ H++   LP+ GAEH+ LL+P+ 
Sbjct: 280 N-QVVLGQHSGPFPSIPELVLHYSARPLPVQGAEHLALLYPVT 321

May function as an adapter protein.

Mus musculus (taxid: 10090)

>sp|Q6YKA8|DRK_DROSI Protein E(sev)2B OS=Drosophila simulans GN=drk PE=3 SV=1

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 56/87 (64%), Gaps = 3/87 (3%)

Query: 2   ANPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKI 61
           +N   +   +WY+G +TR +AE +L N +EG++L+R SES+  D+SLS+K   G  H K+
Sbjct: 50  SNYIEMKNHDWYYGRITRADAEKLLSNKHEGAFLIRISESSPGDFSLSVKCPDGVQHFKV 109

Query: 62  QRDPDTGKFILGQFSAPFDSVPEMIQH 88
            RD  + KF L  +   F+S+ E++++
Sbjct: 110 LRDAQS-KFFL--WVVKFNSLNELVEY 133

Required for proper signaling by sevenless. May act to stimulate the ability of Sos to catalyze Ras1 activation by linking sevenless and Sos in a signaling complex.

Drosophila simulans (taxid: 7240)

>sp|Q08012|DRK_DROME Protein enhancer of sevenless 2B OS=Drosophila melanogaster GN=drk PE=1 SV=1

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 56/87 (64%), Gaps = 3/87 (3%)

Query: 2   ANPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKI 61
           +N   +   +WY+G +TR +AE +L N +EG++L+R SES+  D+SLS+K   G  H K+
Sbjct: 50  SNYIEMKNHDWYYGRITRADAEKLLSNKHEGAFLIRISESSPGDFSLSVKCPDGVQHFKV 109

Query: 62  QRDPDTGKFILGQFSAPFDSVPEMIQH 88
            RD  + KF L  +   F+S+ E++++
Sbjct: 110 LRDAQS-KFFL--WVVKFNSLNELVEY 133

Required for proper signaling by sevenless. May act to stimulate the ability of Sos to catalyze Ras1 activation by linking sevenless and Sos in a signaling complex.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	113
350414365	1396	PREDICTED: hypothetical protein LOC10074	0.955	0.077	0.712	3e-40
158287935	837	AGAP010886-PA [Anopheles gambiae str. PE	0.955	0.129	0.685	3e-40
307197905	160	SH2 domain-containing adapter protein F	0.955	0.675	0.703	4e-40
383860728	1112	PREDICTED: uncharacterized protein LOC10	0.955	0.097	0.703	5e-40
345496309	1182	PREDICTED: hypothetical protein LOC10012	0.955	0.091	0.703	5e-40
328780654	1156	PREDICTED: hypothetical protein LOC55087	0.955	0.093	0.703	5e-40
340715171	1395	PREDICTED: hypothetical protein LOC10064	0.955	0.077	0.703	5e-40
380016661	1144	PREDICTED: uncharacterized protein LOC10	0.955	0.094	0.703	6e-40
157108159	1044	hypothetical protein AaeL_AAEL004961 [Ae	0.955	0.103	0.685	7e-40
332023624	160	SH2 domain-containing adapter protein F	0.955	0.675	0.685	2e-39

>gi|350414365|ref|XP_003490294.1| PREDICTED: hypothetical protein LOC100748169 [Bombus impatiens]

 Score =  168 bits (426), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 77/108 (71%), Positives = 92/108 (85%)

Query: 6    PLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDP 65
            PL+++ WYHGS+TR EAE ILR   EGSYLVRNSES + DYSLSLKSARGFMHM+IQ++ 
Sbjct: 1289 PLERQGWYHGSITRIEAEAILRLLKEGSYLVRNSESTKQDYSLSLKSARGFMHMRIQKNE 1348

Query: 66   DTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQLL 113
            +   +ILGQFS PFDS+PEM++HF+ NRLPI GAEHMCLLHP+I QLL
Sbjct: 1349 ELNAYILGQFSKPFDSIPEMVRHFSVNRLPIRGAEHMCLLHPVIAQLL 1396

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158287935|ref|XP_309808.4| AGAP010886-PA [Anopheles gambiae str. PEST] gi|157019427|gb|EAA05448.4| AGAP010886-PA [Anopheles gambiae str. PEST]

 Score =  168 bits (426), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 74/108 (68%), Positives = 93/108 (86%)

Query: 6   PLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDP 65
           PLD++ WYHGS++R +AE ILR  +EGS+LVRNSES R DYSL+LKSA+GFMHM+IQRD 
Sbjct: 730 PLDRQGWYHGSISRIDAEKILRPLSEGSFLVRNSESTRQDYSLTLKSAKGFMHMRIQRDA 789

Query: 66  DTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQLL 113
           D+G+FILGQFS PF ++P+MI+HF  NRLP+ GAEHMCLL P+I Q+L
Sbjct: 790 DSGQFILGQFSRPFPTIPDMIRHFCLNRLPVRGAEHMCLLEPVIAQIL 837

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307197905|gb|EFN79004.1| SH2 domain-containing adapter protein F [Harpegnathos saltator]

 Score =  168 bits (426), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 76/108 (70%), Positives = 92/108 (85%)

Query: 6   PLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDP 65
           PL+++ WYHGS+TR EAE +LR   EGSYLVRNSES + DYSLSLKSARGFMHM+IQR+ 
Sbjct: 53  PLERQGWYHGSITRIEAEAVLRLLREGSYLVRNSESTKQDYSLSLKSARGFMHMRIQRNE 112

Query: 66  DTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQLL 113
           +   +ILGQFS PF+S+PEM++HF+ NRLPI GAEHMCLLHP+I QLL
Sbjct: 113 ELNAYILGQFSKPFESIPEMVRHFSVNRLPIRGAEHMCLLHPVIAQLL 160

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383860728|ref|XP_003705841.1| PREDICTED: uncharacterized protein LOC100883784 [Megachile rotundata]

 Score =  168 bits (425), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 76/108 (70%), Positives = 92/108 (85%)

Query: 6    PLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDP 65
            PL+++ WYHGS+TR EAE +LR   EGSYLVRNSES + DYSLSLKSARGFMHM+IQ++ 
Sbjct: 1005 PLERQGWYHGSITRIEAEAVLRLLREGSYLVRNSESTKQDYSLSLKSARGFMHMRIQKNE 1064

Query: 66   DTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQLL 113
            +   +ILGQFS PFDS+PEM++HF+ NRLPI GAEHMCLLHP+I QLL
Sbjct: 1065 ELNAYILGQFSKPFDSIPEMVRHFSVNRLPIRGAEHMCLLHPVIAQLL 1112

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345496309|ref|XP_001604240.2| PREDICTED: hypothetical protein LOC100120618 [Nasonia vitripennis]

 Score =  167 bits (424), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 76/108 (70%), Positives = 92/108 (85%)

Query: 6    PLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDP 65
            PL+++ WYHGS+TR EAE +LR   EGSYLVRNSES + DYSLSLKSARGFMHM+IQ++ 
Sbjct: 1075 PLERQGWYHGSITRIEAEAVLRLLREGSYLVRNSESTKQDYSLSLKSARGFMHMRIQKNE 1134

Query: 66   DTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQLL 113
            +   +ILGQFS PFDS+PEM++HF+ NRLPI GAEHMCLLHP+I QLL
Sbjct: 1135 ELNAYILGQFSKPFDSIPEMVRHFSINRLPIRGAEHMCLLHPVIAQLL 1182

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328780654|ref|XP_623264.3| PREDICTED: hypothetical protein LOC550870 isoform 2 [Apis mellifera]

 Score =  167 bits (424), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 76/108 (70%), Positives = 92/108 (85%)

Query: 6    PLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDP 65
            PL+++ WYHGS+TR EAE +LR   EGSYLVRNSES + DYSLSLKSARGFMHM+IQ++ 
Sbjct: 1049 PLERQGWYHGSITRIEAEAVLRLLREGSYLVRNSESTKQDYSLSLKSARGFMHMRIQKNE 1108

Query: 66   DTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQLL 113
            +   +ILGQFS PFDS+PEM++HF+ NRLPI GAEHMCLLHP+I QLL
Sbjct: 1109 ELNAYILGQFSKPFDSIPEMVRHFSVNRLPIRGAEHMCLLHPVIAQLL 1156

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340715171|ref|XP_003396092.1| PREDICTED: hypothetical protein LOC100645988 [Bombus terrestris]

 Score =  167 bits (424), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 76/108 (70%), Positives = 92/108 (85%)

Query: 6    PLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDP 65
            PL+++ WYHGS+TR EAE +LR   EGSYLVRNSES + DYSLSLKSARGFMHM+IQ++ 
Sbjct: 1288 PLERQGWYHGSITRIEAEAVLRLLREGSYLVRNSESTKQDYSLSLKSARGFMHMRIQKNE 1347

Query: 66   DTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQLL 113
            +   +ILGQFS PFDS+PEM++HF+ NRLPI GAEHMCLLHP+I QLL
Sbjct: 1348 ELNAYILGQFSKPFDSIPEMVRHFSVNRLPIRGAEHMCLLHPVIAQLL 1395

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380016661|ref|XP_003692296.1| PREDICTED: uncharacterized protein LOC100870302 [Apis florea]

 Score =  167 bits (424), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 76/108 (70%), Positives = 92/108 (85%)

Query: 6    PLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDP 65
            PL+++ WYHGS+TR EAE +LR   EGSYLVRNSES + DYSLSLKSARGFMHM+IQ++ 
Sbjct: 1037 PLERQGWYHGSITRIEAEAVLRLLREGSYLVRNSESTKQDYSLSLKSARGFMHMRIQKNE 1096

Query: 66   DTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQLL 113
            +   +ILGQFS PFDS+PEM++HF+ NRLPI GAEHMCLLHP+I QLL
Sbjct: 1097 ELNAYILGQFSKPFDSIPEMVRHFSVNRLPIRGAEHMCLLHPVIAQLL 1144

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157108159|ref|XP_001650105.1| hypothetical protein AaeL_AAEL004961 [Aedes aegypti] gi|108879412|gb|EAT43637.1| AAEL004961-PA [Aedes aegypti]

 Score =  167 bits (423), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 74/108 (68%), Positives = 92/108 (85%)

Query: 6    PLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDP 65
            PLD++ WYHGS++R +AE ILR   EGS+LVRNSES R DYSL+LKSA+GFMHM+IQRD 
Sbjct: 937  PLDRQGWYHGSISRIDAEKILRPLGEGSFLVRNSESTRQDYSLTLKSAKGFMHMRIQRDH 996

Query: 66   DTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQLL 113
            +TG+FILGQFS PF ++P+MI+HF  NRLP+ GAEHMCLL P+I Q+L
Sbjct: 997  ETGQFILGQFSRPFPTIPDMIRHFCLNRLPVRGAEHMCLLEPVIAQIL 1044

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332023624|gb|EGI63855.1| SH2 domain-containing adapter protein F [Acromyrmex echinatior]

 Score =  166 bits (419), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 74/108 (68%), Positives = 92/108 (85%)

Query: 6   PLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDP 65
           PL+++ WYHGS+TR EAE +LR   EGSYLVRNSES + DYSLSLKSARGFMHM+IQ++ 
Sbjct: 53  PLERQGWYHGSITRIEAEGLLRVHQEGSYLVRNSESTKQDYSLSLKSARGFMHMRIQKNE 112

Query: 66  DTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQLL 113
           +   +ILGQFS PF+++PEM++HF+ NRLPI GAEHMCLLHP+I QLL
Sbjct: 113 ELNAYILGQFSKPFENIPEMVRHFSVNRLPIRGAEHMCLLHPVIVQLL 160

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	113
FB|FBgn0264542	1510	CG43921 [Drosophila melanogast	0.946	0.070	0.657	1.3e-34
UNIPROTKB|Q7M4L6	423	SHF "SH2 domain-containing ada	0.902	0.241	0.572	2.1e-29
MGI|MGI:3613669	238	Shf "Src homology 2 domain con	0.902	0.428	0.572	2.1e-29
UNIPROTKB|F1NNE2	233	SHB "Uncharacterized protein"	0.938	0.454	0.546	2.4e-28
UNIPROTKB|F1ST57	166	SHB "Uncharacterized protein"	0.938	0.638	0.546	3.1e-28
ZFIN|ZDB-GENE-030131-6059	391	shdb "Src homology 2 domain co	0.946	0.273	0.546	5e-28
UNIPROTKB|E1BLY9	507	SHB "Uncharacterized protein"	0.938	0.209	0.546	7.4e-28
MGI|MGI:98294	503	Shb "src homology 2 domain-con	0.938	0.210	0.537	1.2e-27
UNIPROTKB|Q15464	509	SHB "SH2 domain-containing ada	0.938	0.208	0.527	3.6e-27
MGI|MGI:1099462	492	She "src homology 2 domain-con	0.893	0.205	0.470	5.2e-22

FB|FBgn0264542 CG43921 [Drosophila melanogaster (taxid:7227)]

 Score = 389 (142.0 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 71/108 (65%), Positives = 91/108 (84%)

Query:     6 PLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDP 65
             PL+++ WYHG++TR EAE  LR  +EGS+LVRN ES + DYSLSLK A+GFMHM+IQR+ 
Sbjct:  1404 PLERQGWYHGAITRIEAETTLRPLSEGSFLVRNCESTKQDYSLSLKGAKGFMHMRIQRN- 1462

Query:    66 DTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQLL 113
             +TG++ILGQFS PF++VPEMI+HF  NRLP+ GAEHMCL+ P+I QLL
Sbjct:  1463 ETGQYILGQFSRPFETVPEMIRHFCLNRLPVRGAEHMCLIEPVIAQLL 1510

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0090175 "regulation of establishment of planar polarity" evidence=IMP

UNIPROTKB|Q7M4L6 SHF "SH2 domain-containing adapter protein F" [Homo sapiens (taxid:9606)]

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 59/103 (57%), Positives = 82/103 (79%)

Query:     6 PLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDP 65
             PL+ + WYHG+++R +AEN+LR   E SYLVRNSE+++ D+SLSLKS++GFMHMK+ R  
Sbjct:   317 PLENQVWYHGAISRTDAENLLRLCKEASYLVRNSETSKNDFSLSLKSSQGFMHMKLSRTK 376

Query:    66 DTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPM 108
             +  K++LGQ S PF SVPE++ H+A  +LPI GAEHM LL+P+
Sbjct:   377 EH-KYVLGQNSPPFSSVPEIVHHYASRKLPIKGAEHMSLLYPV 418

GO:0006915 "apoptotic process" evidence=IEA

MGI|MGI:3613669 Shf "Src homology 2 domain containing F" [Mus musculus (taxid:10090)]

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 59/103 (57%), Positives = 82/103 (79%)

Query:     6 PLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDP 65
             PL+ + WYHG+++R +AEN+LR   E SYLVRNSE+++ D+SLSLKS++GFMHMK+ R  
Sbjct:   132 PLENQVWYHGAISRTDAENLLRLCKEASYLVRNSETSKNDFSLSLKSSQGFMHMKLSRTK 191

Query:    66 DTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPM 108
             +  K++LGQ S PF SVPE++ H+A  +LPI GAEHM LL+P+
Sbjct:   192 EH-KYVLGQNSPPFSSVPEIVHHYASRKLPIKGAEHMSLLYPV 233

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0006915 "apoptotic process" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1NNE2 SHB "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 59/108 (54%), Positives = 85/108 (78%)

Query:     6 PLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDP 65
             PL+++ WYHG+++R +AEN+LR   E SYLVRNS++++ DYSLSLKS++GFMHMK+ +  
Sbjct:   128 PLEKQIWYHGAISRTDAENLLRLCKECSYLVRNSQTSKHDYSLSLKSSQGFMHMKLTKTK 187

Query:    66 DTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQLL 113
             +  K+ILGQ S PFDSVPE+I ++   +LPI GAEH+ LL+P+  + L
Sbjct:   188 E--KYILGQNSPPFDSVPEVIHYYTTKKLPIKGAEHLSLLYPVAVRTL 233

GO:0001948 "glycoprotein binding" evidence=IEA

GO:0030097 "hemopoiesis" evidence=IEA

GO:0042100 "B cell proliferation" evidence=IEA

GO:0048514 "blood vessel morphogenesis" evidence=IEA

GO:1900194 "negative regulation of oocyte maturation" evidence=IEA

UNIPROTKB|F1ST57 SHB "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 59/108 (54%), Positives = 84/108 (77%)

Query:     6 PLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDP 65
             PL+++ WYHG+++R +AEN+LR   E SYLVRNS+++R DYSLSLKS +GFMHMK+ +  
Sbjct:    61 PLEKQIWYHGAISRGDAENLLRLCKECSYLVRNSQTSRHDYSLSLKSNQGFMHMKLAKTK 120

Query:    66 DTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQLL 113
             +  K++LGQ S PFDSVPE+I ++   +LPI GAEH+ LL+P+  + L
Sbjct:   121 E--KYVLGQNSPPFDSVPEVIHYYTTRKLPIKGAEHLSLLYPVAVRTL 166

GO:1900194 "negative regulation of oocyte maturation" evidence=IEA

GO:0048514 "blood vessel morphogenesis" evidence=IEA

GO:0042100 "B cell proliferation" evidence=IEA

GO:0030097 "hemopoiesis" evidence=IEA

GO:0001948 "glycoprotein binding" evidence=IEA

ZFIN|ZDB-GENE-030131-6059 shdb "Src homology 2 domain containing transforming protein D, b" [Danio rerio (taxid:7955)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 59/108 (54%), Positives = 84/108 (77%)

Query:     6 PLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDP 65
             PL+++ WYHGS++R EAE++L    E SYLVRNSE++R DYSLSL+S +GFMHMK  +  
Sbjct:   285 PLEKQVWYHGSLSRSEAESLLTLCKECSYLVRNSETSRLDYSLSLRSCQGFMHMKFSQCK 344

Query:    66 DTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQLL 113
             D G++ILGQ S PF+++PE+I ++  ++LPI GAEH+ LL P++ Q L
Sbjct:   345 D-GRYILGQNSPPFETIPEVIHYYTTHKLPIKGAEHLSLLFPVLVQTL 391

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|E1BLY9 SHB "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 315 (115.9 bits), Expect = 7.4e-28, P = 7.4e-28
 Identities = 59/108 (54%), Positives = 84/108 (77%)

Query:     6 PLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDP 65
             PL+++ WYHG+++R +AEN+LR   E SYLVRNS+++R DYSLSLKS +GFMHMK+ +  
Sbjct:   402 PLEKQIWYHGAISRGDAENLLRLCKECSYLVRNSQTSRHDYSLSLKSNQGFMHMKLAKTK 461

Query:    66 DTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQLL 113
             +  K++LGQ S PFDSVPE+I ++   +LPI GAEH+ LL+P+  + L
Sbjct:   462 E--KYVLGQNSPPFDSVPEVIHYYTTRKLPIKGAEHLSLLYPVAVRTL 507

GO:1900194 "negative regulation of oocyte maturation" evidence=IEA

GO:0048514 "blood vessel morphogenesis" evidence=IEA

GO:0042100 "B cell proliferation" evidence=IEA

GO:0030097 "hemopoiesis" evidence=IEA

GO:0001948 "glycoprotein binding" evidence=IEA

MGI|MGI:98294 Shb "src homology 2 domain-containing transforming protein B" [Mus musculus (taxid:10090)]

 Score = 313 (115.2 bits), Expect = 1.2e-27, P = 1.2e-27
 Identities = 58/108 (53%), Positives = 84/108 (77%)

Query:     6 PLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDP 65
             PL+++ WYHG+++R +AEN+LR   E SYLVRNS++++ DYSLSLKS +GFMHMK+ +  
Sbjct:   398 PLEKQIWYHGAISRSDAENLLRLCKECSYLVRNSQTSKHDYSLSLKSNQGFMHMKLAKTK 457

Query:    66 DTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQLL 113
             +  K++LGQ S PFDSVPE+I ++   +LPI GAEH+ LL+P+  + L
Sbjct:   458 E--KYVLGQNSPPFDSVPEVIHYYTTRKLPIKGAEHLSLLYPVAVRTL 503

GO:0001525 "angiogenesis" evidence=IEA

GO:0001568 "blood vessel development" evidence=IMP

GO:0001948 "glycoprotein binding" evidence=IDA

GO:0005070 "SH3/SH2 adaptor activity" evidence=TAS

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030097 "hemopoiesis" evidence=IMP

GO:0030154 "cell differentiation" evidence=IEA

GO:0042100 "B cell proliferation" evidence=IDA

GO:0048514 "blood vessel morphogenesis" evidence=IGI;IMP

GO:1900194 "negative regulation of oocyte maturation" evidence=IMP

UNIPROTKB|Q15464 SHB "SH2 domain-containing adapter protein B" [Homo sapiens (taxid:9606)]

 Score = 309 (113.8 bits), Expect = 3.6e-27, P = 3.6e-27
 Identities = 57/108 (52%), Positives = 84/108 (77%)

Query:     6 PLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDP 65
             PL+++ WYHG+++R +AEN+LR   E SYLVRNS++++ DYSLSL+S +GFMHMK+ +  
Sbjct:   404 PLEKQIWYHGAISRGDAENLLRLCKECSYLVRNSQTSKHDYSLSLRSNQGFMHMKLAKTK 463

Query:    66 DTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQLL 113
             +  K++LGQ S PFDSVPE+I ++   +LPI GAEH+ LL+P+  + L
Sbjct:   464 E--KYVLGQNSPPFDSVPEVIHYYTTRKLPIKGAEHLSLLYPVAVRTL 509

GO:0001525 "angiogenesis" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005070 "SH3/SH2 adaptor activity" evidence=TAS

GO:0007165 "signal transduction" evidence=TAS

MGI|MGI:1099462 She "src homology 2 domain-containing transforming protein E" [Mus musculus (taxid:10090)]

 Score = 262 (97.3 bits), Expect = 5.2e-22, P = 5.2e-22
 Identities = 48/102 (47%), Positives = 74/102 (72%)

Query:     7 LDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPD 66
             L+++ WYHGS++R EAE+ L+   E +YLVRNSES    YS++LK+++G +H+ + +  D
Sbjct:   388 LEKQPWYHGSISRAEAESRLQPCKEAAYLVRNSESGNSKYSIALKTSQGCVHIIVAQTKD 447

Query:    67 TGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPM 108
               K+ L Q SA FDS+PE++ +++  +LP  GAEHM LLHP+
Sbjct:   448 N-KYTLNQTSAVFDSIPEVVHYYSNAKLPFKGAEHMTLLHPV 488

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8CG80	SHF_MOUSE	No assigned EC number	0.5555	0.9469	0.4495	yes	N/A
Q7M4L6	SHF_HUMAN	No assigned EC number	0.5555	0.9469	0.2529	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	113
cd09945	98	cd09945, SH2_SHB_SHD_SHE_SHF_like, Src homology 2	9e-54
cd10392	98	cd10392, SH2_SHF, Src homology 2 domain found in S	4e-40
cd10389	97	cd10389, SH2_SHB, Src homology 2 domain found in S	3e-36
cd10391	98	cd10391, SH2_SHE, Src homology 2 domain found in S	2e-32
cd10390	98	cd10390, SH2_SHD, Src homology 2 domain found in S	6e-30
smart00252	84	smart00252, SH2, Src homology 2 domains	1e-24
cd00173	79	cd00173, SH2, Src homology 2 (SH2) domain	1e-23
pfam00017	77	pfam00017, SH2, SH2 domain	4e-22
cd09929	121	cd09929, SH2_BLNK_SLP-76, Src homology 2 (SH2) dom	2e-16
cd10409	98	cd10409, SH2_Nck2, Src homology 2 (SH2) domain fou	3e-15
cd09940	102	cd09940, SH2_Vav_family, Src homology 2 (SH2) doma	7e-15
cd09943	93	cd09943, SH2_Nck_family, Src homology 2 (SH2) doma	2e-14
cd09941	95	cd09941, SH2_Grb2_like, Src homology 2 domain foun	2e-14
cd10361	90	cd10361, SH2_Fps_family, Src homology 2 (SH2) doma	3e-14
cd09933	101	cd09933, SH2_Src_family, Src homology 2 (SH2) doma	9e-14
cd09935	94	cd09935, SH2_ABL, Src homology 2 (SH2) domain foun	9e-14
cd10408	97	cd10408, SH2_Nck1, Src homology 2 (SH2) domain fou	2e-13
cd09923	81	cd09923, SH2_SOCS_family, Src homology 2 (SH2) dom	3e-13
cd09932	104	cd09932, SH2_C-SH2_PLC_gamma_like, C-terminal Src	6e-13
cd10337	136	cd10337, SH2_BCAR3, Src homology 2 (SH2) domain in	1e-12
cd09942	110	cd09942, SH2_nSH2_p85_like, N-terminal Src homolog	2e-12
cd10354	77	cd10354, SH2_Cterm_RasGAP, C-terminal Src homology	5e-12
cd10370	96	cd10370, SH2_Src_Src42, Src homology 2 (SH2) domai	6e-12
cd10355	92	cd10355, SH2_DAPP1_BAM32_like, Src homology 2 doma	1e-11
cd10340	99	cd10340, SH2_N-SH2_SHP_like, N-terminal Src homolo	2e-11
cd10367	101	cd10367, SH2_Src_Fgr, Src homology 2 (SH2) domain	4e-11
cd10348	86	cd10348, SH2_Cterm_shark_like, C-terminal Src homo	7e-11
cd10718	88	cd10718, SH2_CIS, Src homology 2 (SH2) domain foun	8e-11
cd09931	99	cd09931, SH2_C-SH2_SHP_like, C-terminal Src homolo	1e-10
cd10387	100	cd10387, SH2_SOCS6, Src homology 2 (SH2) domain fo	1e-10
cd09925	104	cd09925, SH2_SHC, Src homology 2 (SH2) domain foun	3e-10
cd10352	91	cd10352, SH2_a2chimerin_b2chimerin, Src homology 2	4e-10
cd10369	96	cd10369, SH2_Src_Frk, Src homology 2 (SH2) domain	4e-10
cd10366	101	cd10366, SH2_Src_Yes, Src homology 2 (SH2) domain	5e-10
cd10418	101	cd10418, SH2_Src_Fyn_isoform_a_like, Src homology	7e-10
cd10351	103	cd10351, SH2_SH2D4B, Src homology 2 domain found i	1e-09
cd10341	99	cd10341, SH2_N-SH2_PLC_gamma_like, N-terminal Src	1e-09
cd09938	104	cd09938, SH2_N-SH2_Zap70_Syk_like, N-terminal Src	2e-09
cd09934	104	cd09934, SH2_Tec_family, Src homology 2 (SH2) doma	2e-09
cd10383	103	cd10383, SH2_SOCS2, Src homology 2 (SH2) domain fo	5e-09
cd10405	103	cd10405, SH2_Vav1, Src homology 2 (SH2) domain fou	5e-09
cd10347	81	cd10347, SH2_Nterm_shark_like, N-terminal Src homo	5e-09
cd10388	101	cd10388, SH2_SOCS7, Src homology 2 (SH2) domain fo	1e-08
cd10398	106	cd10398, SH2_Tec_Txk, Src homology 2 (SH2) domain	2e-08
cd10419	101	cd10419, SH2_Src_Fyn_isoform_b_like, Src homology	3e-08
cd10384	101	cd10384, SH2_SOCS3, Src homology 2 (SH2) domain fo	3e-08
cd10360	79	cd10360, SH2_Srm, Src homology 2 (SH2) domain foun	4e-08
cd10365	101	cd10365, SH2_Src_Src, Src homology 2 (SH2) domain	5e-08
cd10350	103	cd10350, SH2_SH2D4A, Src homology 2 domain found i	7e-08
cd10396	108	cd10396, SH2_Tec_Itk, Src homology 2 (SH2) domain	7e-08
cd10368	101	cd10368, SH2_Src_Fyn, Src homology 2 (SH2) domain	7e-08
cd10349	77	cd10349, SH2_SH2D2A_SH2D7, Src homology 2 domain f	7e-08
cd10401	99	cd10401, SH2_C-SH2_Syk_like, C-terminal Src homolo	9e-08
cd09944	108	cd09944, SH2_Grb7_family, Src homology 2 (SH2) dom	2e-07
cd09930	104	cd09930, SH2_cSH2_p85_like, C-terminal Src homolog	2e-07
cd10344	104	cd10344, SH2_SLAP, Src homology 2 domain found in	2e-07
cd10356	113	cd10356, SH2_ShkA_ShkC, Src homology 2 (SH2) domai	2e-07
cd09946	102	cd09946, SH2_HSH2_like, Src homology 2 domain foun	3e-07
cd09937	98	cd09937, SH2_csk_like, Src homology 2 (SH2) domain	4e-07
cd10402	105	cd10402, SH2_C-SH2_Zap70, C-terminal Src homology	9e-07
cd10343	103	cd10343, SH2_SHIP, Src homology 2 (SH2) domain fou	9e-07
cd09926	106	cd09926, SH2_CRK_like, Src homology 2 domain found	9e-07
cd10364	101	cd10364, SH2_Src_Lyn, Src homology 2 (SH2) domain	1e-06
cd10382	98	cd10382, SH2_SOCS1, Src homology 2 (SH2) domain fo	1e-06
cd10416	102	cd10416, SH2_SH2D2A, Src homology 2 domain found i	1e-06
cd10363	104	cd10363, SH2_Src_HCK, Src homology 2 (SH2) domain	2e-06
cd10353	103	cd10353, SH2_Nterm_RasGAP, N-terminal Src homology	2e-06
cd10357	87	cd10357, SH2_ShkD_ShkE, Src homology 2 (SH2) domai	2e-06
cd10410	97	cd10410, SH2_SH2B1, Src homology 2 (SH2) domain fo	3e-06
cd10417	102	cd10417, SH2_SH2D7, Src homology 2 domain found in	5e-06
cd10371	100	cd10371, SH2_Src_Blk, Src homology 2 (SH2) domain	6e-06
cd10346	97	cd10346, SH2_SH2B_family, Src homology 2 (SH2) dom	9e-06
cd10397	106	cd10397, SH2_Tec_Btk, Src homology 2 (SH2) domain	1e-05
cd10345	95	cd10345, SH2_C-SH2_Zap70_Syk_like, C-terminal Src	2e-05
cd10399	106	cd10399, SH2_Tec_Bmx, Src homology 2 (SH2) domain	3e-05
cd10406	103	cd10406, SH2_Vav2, Src homology 2 (SH2) domain fou	3e-05
cd10415	108	cd10415, SH2_Grb10, Src homology 2 (SH2) domain fo	5e-05
cd10362	101	cd10362, SH2_Src_Lck, Src homology 2 (SH2) domain	7e-05
cd09927	116	cd09927, SH2_Tensin_like, Src homology 2 domain fo	7e-05
cd10358	100	cd10358, SH2_PTK6_Brk, Src homology 2 domain found	9e-05
cd10407	103	cd10407, SH2_Vav3, Src homology 2 (SH2) domain fou	2e-04
cd10412	97	cd10412, SH2_SH2B3, Src homology 2 (SH2) domain fo	3e-04
cd10400	103	cd10400, SH2_SAP1a, Src homology 2 (SH2) domain fo	4e-04
cd10414	108	cd10414, SH2_Grb14, Src homology 2 (SH2) domain fo	4e-04

>gnl|CDD|198198 cd09945, SH2_SHB_SHD_SHE_SHF_like, Src homology 2 domain found in SH2 domain-containing adapter proteins B, D, E, and F (SHB, SHD, SHE, SHF)

 Score =  162 bits (413), Expect = 9e-54
 Identities = 66/97 (68%), Positives = 85/97 (87%), Gaps = 1/97 (1%)

Query: 12  WYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFI 71
           WYHG++TR EAE++LR   EGSYLVRNSES + DYSLSLKSA+GFMHM+IQR+ +TG++I
Sbjct: 3   WYHGAITRIEAESLLRPCKEGSYLVRNSESTKQDYSLSLKSAKGFMHMRIQRN-ETGQYI 61

Query: 72  LGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPM 108
           LGQFS PF+++PEMI+H+  N+LP+ GAEHMCLL P+
Sbjct: 62  LGQFSRPFETIPEMIRHYCLNKLPVRGAEHMCLLEPV 98

SHB, SHD, SHE, and SHF are SH2 domain-containing proteins that play various roles throughout the cell. SHB functions in generating signaling compounds in response to tyrosine kinase activation. SHB contains proline-rich motifs, a phosphotyrosine binding (PTB) domain, tyrosine phosphorylation sites, and a SH2 domain. SHB mediates certain aspects of platelet-derived growth factor (PDGF) receptor-, fibroblast growth factor (FGF) receptor-, neural growth factor (NGF) receptor TRKA-, T cell receptor-, interleukin-2 (IL-2) receptor- and focal adhesion kinase- (FAK) signaling. SRC-like FYN-Related Kinase FRK/RAK (also named BSK/IYK or GTK) and SHB regulate apoptosis, proliferation and differentiation. SHB promotes apoptosis and is also required for proper mitogenicity, spreading and tubular morphogenesis in endothelial cells. SHB also plays a role in preventing early cavitation of embryoid bodies and reduces differentiation to cells expressing albumin, amylase, insulin and glucagon. SHB is a multifunctional protein that has difference responses in different cells under various conditions. SHE is expressed in heart, lung, brain, and skeletal muscle, while expression of SHD is restricted to the brain. SHF is mainly expressed in skeletal muscle, brain, liver, prostate, testis, ovary, small intestine, and colon. SHD may be a physiological substrate of c-Abl and may function as an adapter protein in the central nervous system. It is also thought to be involved in apoptotic regulation. SHD contains five YXXP motifs, a substrate sequence preferred by Abl tyrosine kinases, in addition to a poly-proline rich region and a C-terminal SH2 domain. SHE contains two pTry protein binding domains, protein interaction domain (PID) and a SH2 domain, followed by a glycine-proline rich region, all of which are N-terminal to the phosphotyrosine binding (PTB) domain. SHF contains four putative tyrosine phosphorylation sites and an SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 98

>gnl|CDD|198255 cd10392, SH2_SHF, Src homology 2 domain found in SH2 domain-containing adapter protein F (SHF)

 Score =  128 bits (322), Expect = 4e-40
 Identities = 58/97 (59%), Positives = 78/97 (80%), Gaps = 1/97 (1%)

Query: 12  WYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFI 71
           WYHG+++R +AEN+LR   E SYLVRNSE+++ D+SLSLKS++GFMHMK+ R  +  K++
Sbjct: 3   WYHGAISRTDAENLLRLCKEASYLVRNSETSKNDFSLSLKSSQGFMHMKLSRTKEH-KYV 61

Query: 72  LGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPM 108
           LGQ S PF SVPE+I H+A  +LPI GAEHM LL+P+
Sbjct: 62  LGQNSPPFSSVPEIIHHYASRKLPIKGAEHMSLLYPV 98

SHF is thought to play a role in PDGF-receptor signaling and regulation of apoptosis. SHF is mainly expressed in skeletal muscle, brain, liver, prostate, testis, ovary, small intestine, and colon. SHF contains four putative tyrosine phosphorylation sites and an SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 98

>gnl|CDD|198252 cd10389, SH2_SHB, Src homology 2 domain found in SH2 domain-containing adapter protein B (SHB)

 Score =  118 bits (297), Expect = 3e-36
 Identities = 55/97 (56%), Positives = 77/97 (79%), Gaps = 2/97 (2%)

Query: 12  WYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFI 71
           WYHG+++R +AEN+LR   E SYLVRNS++++ DYSLSLKS +GFMHMK+ +  +  K++
Sbjct: 3   WYHGAISRGDAENLLRLCKECSYLVRNSQTSKHDYSLSLKSNQGFMHMKLAKTKE--KYV 60

Query: 72  LGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPM 108
           LGQ S PFDSVPE+I ++   +LPI GAEH+ LL+P+
Sbjct: 61  LGQNSPPFDSVPEVIHYYTTRKLPIKGAEHLSLLYPV 97

SHB functions in generating signaling compounds in response to tyrosine kinase activation. SHB contains proline-rich motifs, a phosphotyrosine binding (PTB) domain, tyrosine phosphorylation sites, and a SH2 domain. SHB mediates certain aspects of platelet-derived growth factor (PDGF) receptor-, fibroblast growth factor (FGF) receptor-, neural growth factor (NGF) receptor TRKA-, T cell receptor-, interleukin-2 (IL-2) receptor- and focal adhesion kinase- (FAK) signaling. SRC-like FYN-Related Kinase FRK/RAK (also named BSK/IYK or GTK) and SHB regulate apoptosis, proliferation and differentiation. SHB promotes apoptosis and is also required for proper mitogenicity, spreading and tubular morphogenesis in endothelial cells. SHB also plays a role in preventing early cavitation of embryoid bodies and reduces differentiation to cells expressing albumin, amylase, insulin and glucagon. SHB is a multifunctional protein that has difference responses in different cells under various conditions. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 97

>gnl|CDD|198254 cd10391, SH2_SHE, Src homology 2 domain found in SH2 domain-containing adapter protein E (SHE)

 Score =  108 bits (272), Expect = 2e-32
 Identities = 48/97 (49%), Positives = 70/97 (72%), Gaps = 1/97 (1%)

Query: 12  WYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFI 71
           WYHGS++R EAE+ L+   E SYLVRNSES    YS++LK+++G +H+ + +  D  K+ 
Sbjct: 3   WYHGSISRAEAESRLQPCKEASYLVRNSESGNSKYSIALKTSQGCVHIIVAQTKDN-KYT 61

Query: 72  LGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPM 108
           L Q SA FDS+PE++ +++  +LP  GAEHM LLHP+
Sbjct: 62  LNQTSAVFDSIPEVVHYYSNEKLPFKGAEHMTLLHPV 98

SHE is expressed in heart, lung, brain, and skeletal muscle. SHE contains two pTry protein binding domains, protein interaction domain (PID) and a SH2 domain, followed by a glycine-proline rich region, all of which are N-terminal to the phosphotyrosine binding (PTB) domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 98

>gnl|CDD|198253 cd10390, SH2_SHD, Src homology 2 domain found in SH2 domain-containing adapter proteins D (SHD)

 Score =  102 bits (256), Expect = 6e-30
 Identities = 48/97 (49%), Positives = 70/97 (72%), Gaps = 1/97 (1%)

Query: 12  WYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFI 71
           W+HG ++R +AEN+L    EGSYLVR SE+   D SLSL+S++GF+H+K  R  +  + +
Sbjct: 3   WFHGPLSRADAENLLSLCKEGSYLVRLSETRPQDCSLSLRSSQGFLHLKFARTREN-QVV 61

Query: 72  LGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPM 108
           LGQ S PF SVPE++ H++   LP+ GAEH+ LL+P+
Sbjct: 62  LGQHSGPFPSVPELVLHYSSRPLPVQGAEHLALLYPV 98

The expression of SHD is restricted to the brain. SHD may be a physiological substrate of c-Abl and may function as an adapter protein in the central nervous system. It is also thought to be involved in apoptotic regulation. SHD contains five YXXP motifs, a substrate sequence preferred by Abl tyrosine kinases, in addition to a poly-proline rich region and a C-terminal SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 98

>gnl|CDD|214585 smart00252, SH2, Src homology 2 domains

 Score = 88.8 bits (221), Expect = 1e-24
 Identities = 32/85 (37%), Positives = 53/85 (62%), Gaps = 2/85 (2%)

Query: 11 NWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKF 70
           WYHG ++R EAE +L+N  +G +LVR+SES+  DY LS++      H +I+R+ D   +
Sbjct: 2  PWYHGFISREEAEKLLKNEGDGDFLVRDSESSPGDYVLSVRVKGKVKHYRIRRNEDGKFY 61

Query: 71 ILGQFSAPFDSVPEMIQHFAENRLP 95
          + G     F S+ E+++H+ +N L 
Sbjct: 62 LEGGRK--FPSLVELVEHYQKNSLG 84

Src homology 2 domains bind phosphotyrosine-containing polypeptides via 2 surface pockets. Specificity is provided via interaction with residues that are distinct from the phosphotyrosine. Only a single occurrence of a SH2 domain has been found in S. cerevisiae. Length = 84

>gnl|CDD|198173 cd00173, SH2, Src homology 2 (SH2) domain

 Score = 86.4 bits (214), Expect = 1e-23
 Identities = 33/79 (41%), Positives = 51/79 (64%), Gaps = 2/79 (2%)

Query: 12 WYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARG-FMHMKIQRDPDTGKF 70
          W+HGS++R EAE +LR   +G++LVR S S   DY LS++S  G   H  I+R+   G +
Sbjct: 2  WFHGSISREEAERLLRGKPDGTFLVRESSSEPGDYVLSVRSGDGKVKHYLIERNEG-GYY 60

Query: 71 ILGQFSAPFDSVPEMIQHF 89
          +LG     F S+PE+++H+
Sbjct: 61 LLGGSGRTFPSLPELVEHY 79

In general, SH2 domains are involved in signal transduction; they bind pTyr-containing polypeptide ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. They are present in a wide array of proteins including: adaptor proteins (Nck1, Crk, Grb2), scaffolds (Slp76, Shc, Dapp1), kinases (Src, Syk, Fps, Tec), phosphatases (Shp-1, Shp-2), transcription factors (STAT1), Ras signaling molecules (Ras-Gap), ubiquitination factors (c-Cbl), cytoskeleton regulators (Tensin), signal regulators (SAP), and phospholipid second messengers (PLCgamma), amongst others. Length = 79

>gnl|CDD|215658 pfam00017, SH2, SH2 domain

 Score = 82.2 bits (204), Expect = 4e-22
 Identities = 32/79 (40%), Positives = 50/79 (63%), Gaps = 3/79 (3%)

Query: 12 WYHGSVTRHEAENILRNSN-EGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKF 70
          WYHG ++R EAE +L N   +G++LVR SES   DY+LS++      H +IQ   + G +
Sbjct: 1  WYHGKISREEAERLLLNPKPDGTFLVRESESKPGDYTLSVRDDGRVKHYRIQSLDNGGYY 60

Query: 71 ILGQFSAPFDSVPEMIQHF 89
          I G     F+S+PE+++H+
Sbjct: 61 ISG--GVTFNSLPELVEHY 77

Length = 77

>gnl|CDD|198183 cd09929, SH2_BLNK_SLP-76, Src homology 2 (SH2) domain found in B-cell linker (BLNK) protein and SH2 domain-containing leukocyte protein of 76 kDa (SLP-76)

 Score = 68.9 bits (169), Expect = 2e-16
 Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 13/119 (10%)

Query: 1   MANPKPLDQRNWYHGSVTRHEAENILRNSN-EGSYLVRNS---ESNRPDYSLSLKSARGF 56
                 L  + WY G++ R EAE  LR SN +G++LVR+S   +S++P Y+L +      
Sbjct: 2   AEEEADLLPKEWYAGNIDRKEAEEALRRSNKDGTFLVRDSSGKDSSQP-YTLMVLYNDKV 60

Query: 57  MHMKIQRDPDTGKFILG---QFSAPFDSVPEMIQHFAENRLPIL-----GAEHMCLLHP 107
            +++I+   +T ++ LG   +    F SV E+I+H  +  L ++       +  CLL+ 
Sbjct: 61  YNIQIRFLENTRQYALGTGLRGEETFSSVAEIIEHHQKTPLLLIDGKDNTKDSTCLLYA 119

BLNK (also known as SLP-65 or BASH) is an important adaptor protein expressed in B-lineage cells. BLNK consists of a N-terminal sterile alpha motif (SAM) domain and a C-terminal SH2 domain. BLNK is a cytoplasmic protein, but a part of it is bound to the plasma membrane through an N-terminal leucine zipper motif and transiently bound to a cytoplasmic domain of Iga through its C-terminal SH2 domain upon B cell antigen receptor (BCR)-stimulation. A non-ITAM phosphotyrosine in Iga is necessary for the binding with the BLNK SH2 domain and/or for normal BLNK function in signaling and B cell activation. Upon phosphorylation BLNK binds Btk and PLCgamma2 through their SH2 domains and mediates PLCgamma2 activation by Btk. BLNK also binds other signaling molecules such as Vav, Grb2, Syk, and HPK1. BLNK has been shown to be necessary for BCR-mediated Ca2+ mobilization, for the activation of mitogen-activated protein kinases such as ERK, JNK, and p38 in a chicken B cell line DT40, and for activation of transcription factors such as NF-AT and NF-kappaB in human or mouse B cells. BLNK is involved in B cell development, B cell survival, activation, proliferation, and T-independent immune responses. BLNK is structurally homologous to SLP-76. SLP-76 and (linker for activation of T cells) LAT are adaptor/linker proteins in T cell antigen receptor activation and T cell development. BLNK interacts with many downstream signaling proteins that interact directly with both SLP-76 and LAT. New data suggest functional complementation of SLP-76 and LAT in T cell antigen receptor function with BLNK in BCR function. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 121

>gnl|CDD|198272 cd10409, SH2_Nck2, Src homology 2 (SH2) domain found in Nck

 Score = 65.4 bits (159), Expect = 3e-15
 Identities = 35/93 (37%), Positives = 57/93 (61%), Gaps = 7/93 (7%)

Query: 10  RNWYHGSVTRHEAENILRNSN-EGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTG 68
           + WY+G+VTRH+AE  L     EG +L+R+SES+  D+S+SLK+     H K+Q      
Sbjct: 1   KEWYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKAVGKNKHFKVQL--VDN 58

Query: 69  KFILGQFSAPFDSVPEMIQHFAENRLPILGAEH 101
            + +GQ    F+S+ E+++H+   + PI  +EH
Sbjct: 59  VYCIGQ--RRFNSMDELVEHY--KKAPIFTSEH 87

Nck proteins are adaptors that modulate actin cytoskeleton dynamics by linking proline-rich effector molecules to tyrosine kinases or phosphorylated signaling intermediates. There are two members known in this family: Nck1 (Nckalpha) and Nck2 (Nckbeta and Growth factor receptor-bound protein 4 (Grb4)). They are characterized by having 3 SH3 domains and a C-terminal SH2 domain. Nck1 and Nck2 have overlapping functions as determined by gene knockouts. Both bind receptor tyrosine kinases and other tyrosine-phosphorylated proteins through their SH2 domains. In addition they also bind distinct targets. Neuronal signaling proteins: EphrinB1, EphrinB2, and Disabled-1 (Dab-1) all bind to Nck-2 exclusively. And in the case of PDGFR, Tyr(P)751 binds to Nck1 while Tyr(P)1009 binds to Nck2. Nck1 and Nck2 have a role in the infection process of enteropathogenic Escherichia coli (EPEC). Their SH3 domains are involved in recruiting and activating the N-WASP/Arp2/3 complex inducing actin polymerization resulting in the production of pedestals, dynamic bacteria-presenting protrusions of the plasma membrane. A similar thing occurs in the vaccinia virus where motile plasma membrane projections are formed beneath the virus. Recently it has been shown that the SH2 domains of both Nck1 and Nck2 bind the G-protein coupled receptor kinase-interacting protein 1 (GIT1) in a phosphorylation-dependent manner. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 98

>gnl|CDD|198193 cd09940, SH2_Vav_family, Src homology 2 (SH2) domain found in the Vav family

 Score = 64.2 bits (157), Expect = 7e-15
 Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 2/84 (2%)

Query: 11 NWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKF 70
           W+ G + R  AEN L N  +G+YLVR        Y+LS+K      HMKI++  D G +
Sbjct: 6  LWFVGEMERDTAENRLENRPDGTYLVRVRPQGETQYALSIKYNGDVKHMKIEQRSD-GLY 64

Query: 71 ILGQFSAPFDSVPEMIQHFAENRL 94
           L + S  F S+ E++ ++  N L
Sbjct: 65 YLSE-SRHFKSLVELVNYYERNSL 87

Vav proteins are involved in several processes that require cytoskeletal reorganization, such as the formation of the immunological synapse (IS), phagocytosis, platelet aggregation, spreading, and transformation. Vavs function as guanine nucleotide exchange factors (GEFs) for the Rho/Rac family of GTPases. Vav family members have several conserved motifs/domains including: a leucine-rich region, a leucine-zipper, a calponin homology (CH) domain, an acidic domain, a Dbl-homology (DH) domain, a pleckstrin homology (PH) domain, a cysteine-rich domain, 2 SH3 domains, a proline-rich region, and a SH2 domain. Vavs are the only known Rho GEFs that have both the DH/PH motifs and SH2/SH3 domains in the same protein. The leucine-rich helix-loop-helix (HLH) domain is thought to be involved in protein heterodimerization with other HLH proteins and it may function as a negative regulator by forming inactive heterodimers. The CH domain is usually involved in the association with filamentous actin, but in Vav it controls NFAT stimulation, Ca2+ mobilization, and its transforming activity. Acidic domains are involved in protein-protein interactions and contain regulatory tyrosines. The DH domain is a GDP-GTP exchange factor on Rho/Rac GTPases. The PH domain in involved in interactions with GTP-binding proteins, lipids and/or phosphorylated serine/threonine residues. The SH3 domain is involved in localization of proteins to specific sites within the cell interacting with protein with proline-rich sequences. The SH2 domain mediates a high affinity interaction with tyrosine phosphorylated proteins. There are three Vav mammalian family members: Vav1 which is expressed in the hematopoietic system, Vav2 and Vav3 are more ubiquitously expressed. The members here include insect and amphibian Vavs. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 102

>gnl|CDD|198196 cd09943, SH2_Nck_family, Src homology 2 (SH2) domain found in the Nck family

 Score = 62.9 bits (153), Expect = 2e-14
 Identities = 34/91 (37%), Positives = 56/91 (61%), Gaps = 7/91 (7%)

Query: 12  WYHGSVTRHEAENIL-RNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKF 70
           WY+G +TRH+AE +L  + +EG +L+R+SESN  DYS+SLK+     H K+Q       +
Sbjct: 3   WYYGRITRHQAETLLNEHGHEGDFLIRDSESNPGDYSVSLKAPGRNKHFKVQV--VDNVY 60

Query: 71  ILGQFSAPFDSVPEMIQHFAENRLPILGAEH 101
            +GQ    F ++ E+++H+   + PI  +E 
Sbjct: 61  CIGQRK--FHTMDELVEHY--KKAPIFTSEQ 87

Nck proteins are adaptors that modulate actin cytoskeleton dynamics by linking proline-rich effector molecules to tyrosine kinases or phosphorylated signaling intermediates. There are two members known in this family: Nck1 (Nckalpha) and Nck2 (Nckbeta and Growth factor receptor-bound protein 4 (Grb4)). They are characterized by having 3 SH3 domains and a C-terminal SH2 domain. Nck1 and Nck2 have overlapping functions as determined by gene knockouts. Both bind receptor tyrosine kinases and other tyrosine-phosphorylated proteins through their SH2 domains. In addition they also bind distinct targets. Neuronal signaling proteins: EphrinB1, EphrinB2, and Disabled-1 (Dab-1) all bind to Nck-2 exclusively. And in the case of PDGFR, Tyr(P)751 binds to Nck1 while Tyr(P)1009 binds to Nck2. Nck1 and Nck2 have a role in the infection process of enteropathogenic Escherichia coli (EPEC). Their SH3 domains are involved in recruiting and activating the N-WASP/Arp2/3 complex inducing actin polymerization resulting in the production of pedestals, dynamic bacteria-presenting protrusions of the plasma membrane. A similar thing occurs in the vaccinia virus where motile plasma membrane projections are formed beneath the virus. Recently it has been shown that the SH2 domains of both Nck1 and Nck2 bind the G-protein coupled receptor kinase-interacting protein 1 (GIT1) in a phosphorylation-dependent manner. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 93

>gnl|CDD|199828 cd09941, SH2_Grb2_like, Src homology 2 domain found in Growth factor receptor-bound protein 2 (Grb2) and similar proteins

 Score = 62.7 bits (153), Expect = 2e-14
 Identities = 31/82 (37%), Positives = 49/82 (59%), Gaps = 4/82 (4%)

Query: 8  DQRNWYHGSVTRHEAENILRNS-NEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPD 66
              W+HG ++R EAE IL N   +G++L+R SES+  D+SLS+K      H K+ RD  
Sbjct: 1  KPHPWFHGKISRAEAEEILMNQRPDGAFLIRESESSPGDFSLSVKFGNDVQHFKVLRDG- 59

Query: 67 TGKFILGQFSAPFDSVPEMIQH 88
           GK+ L  +   F+S+ E++ +
Sbjct: 60 AGKYFL--WVVKFNSLNELVDY 79

The adaptor proteins here include homologs Grb2 in humans, Sex muscle abnormal protein 5 (Sem-5) in Caenorhabditis elegans, and Downstream of receptor kinase (drk) in Drosophila melanogaster. They are composed of one SH2 and two SH3 domains. Grb2/Sem-5/drk regulates the Ras pathway by linking the tyrosine kinases to the Ras guanine nucleotide releasing protein Sos, which converts Ras to the active GTP-bound state. The SH2 domain of Grb2/Sem-5/drk binds class II phosphotyrosyl peptides while its SH3 domain binds to Sos and Sos-derived, proline-rich peptides. Besides it function in Ras signaling, Grb2 is also thought to play a role in apoptosis. Unlike most SH2 structures in which the peptide binds in an extended conformation (such that the +3 peptide residue occupies a hydrophobic pocket in the protein, conferring a modest degree of selectivity), Grb2 forms several hydrogen bonds via main chain atoms with the side chain of +2 Asn. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 95

>gnl|CDD|198224 cd10361, SH2_Fps_family, Src homology 2 (SH2) domain found in feline sarcoma, Fujinami poultry sarcoma, and fes-related (Fes/Fps/Fer) proteins

 Score = 62.2 bits (152), Expect = 3e-14
 Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 8/95 (8%)

Query: 5  KPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSE---SNRPDYSLSLKSARGFMHMKI 61
          K L+   +YHG + R +AE +L+  N+G +LVR +E     +    LS++      H  I
Sbjct: 1  KDLENEPYYHGLLPREDAEELLK--NDGDFLVRKTEPKGGGKRKLVLSVRWDGKIRHFVI 58

Query: 62 QRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPI 96
           RD     +I G     F S+ E+I ++ + + PI
Sbjct: 59 NRDDGGKYYIEG---KSFKSISELINYYQKTKEPI 90

The Fps family consists of members Fps/Fes and Fer/Flk/Tyk3. They are cytoplasmic protein-tyrosine kinases implicated in signaling downstream from cytokines, growth factors and immune receptors. Fes/Fps/Fer contains three coiled-coil regions, an SH2 (Src-homology-2) and a TK (tyrosine kinase catalytic) domain signature. Members here include: Fps/Fes, Fer, Kin-31, and In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 90

>gnl|CDD|199827 cd09933, SH2_Src_family, Src homology 2 (SH2) domain found in the Src family of non-receptor tyrosine kinases

 Score = 61.4 bits (150), Expect = 9e-14
 Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 9/88 (10%)

Query: 12 WYHGSVTRHEAENILRNS--NEGSYLVRNSESNRPDYSLSLK---SARGFM--HMKIQRD 64
          W+ G + R +AE +L       G++L+R SE+    YSLS++    ARG    H +I R 
Sbjct: 5  WFFGKIKRKDAEKLLLAPGNPRGTFLIRESETTPGAYSLSVRDGDDARGDTVKHYRI-RK 63

Query: 65 PDTGKFILGQFSAPFDSVPEMIQHFAEN 92
           D G + +    A F ++ E++QH++++
Sbjct: 64 LDNGGYYITT-RATFPTLQELVQHYSKD 90

The Src family kinases are nonreceptor tyrosine kinases that have been implicated in pathways regulating proliferation, angiogenesis, invasion and metastasis, and bone metabolism. It is thought that transforming ability of Src is linked to its ability to activate key signaling molecules in these pathways, rather than through direct activity. As such blocking Src activation has been a target for drug companies. Src family members can be divided into 3 groups based on their expression pattern: 1) Src, Fyn, and Yes; 2) Blk, Fgr, Hck, Lck, and Lyn; and 3) Frk-related kinases Frk/Rak and Iyk/Bsk Of these, cellular c-Src is the best studied and most frequently implicated in oncogenesis. The c-Src contains five distinct regions: a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. Src exists in both active and inactive conformations. Negative regulation occurs through phosphorylation of Tyr, resulting in an intramolecular association between phosphorylated Tyr and the SH2 domain of SRC, which locks the protein in a closed conformation. Further stabilization of the inactive state occurs through interactions between the SH3 domain and a proline-rich stretch of residues within the kinase domain. Conversely, dephosphorylation of Tyr allows SRC to assume an open conformation. Full activity requires additional autophosphorylation of a Tyr residue within the catalytic domain. Loss of the negative-regulatory C-terminal segment has been shown to result in increased activity and transforming potential. Phosphorylation of the C-terminal Tyr residue by C-terminal Src kinase (Csk) and Csk homology kinase results in increased intramolecular interactions and consequent Src inactivation. Specific phosphatases, protein tyrosine phosphatase a (PTPa) and the SH-containing phosphatases SHP1/SHP2, have also been shown to take a part in Src activation. Src is also activated by direct binding of focal adhesion kinase (Fak) and Crk-associated substrate (Cas) to the SH2 domain. SRC activity can also be regulated by numerous receptor tyrosine kinases (RTKs), such as Her2, epidermal growth factor receptor (EGFR), fibroblast growth factor receptor, platelet-derived growth factor receptor (PDGFR), and vascular endothelial growth factor receptor (VEGFR). In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|198189 cd09935, SH2_ABL, Src homology 2 (SH2) domain found in Abelson murine lymphosarcoma virus (ABL) proteins

 Score = 61.3 bits (149), Expect = 9e-14
 Identities = 31/81 (38%), Positives = 49/81 (60%), Gaps = 2/81 (2%)

Query: 12 WYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFI 71
          WYHG ++R+ AE +L +   GS+LVR SES+   YS+SL+      H +I  D D GK  
Sbjct: 5  WYHGPISRNAAEYLLSSGINGSFLVRESESSPGQYSISLRYDGRVYHYRISEDSD-GKVY 63

Query: 72 LGQFSAPFDSVPEMIQHFAEN 92
          + Q    F+++ E++ H ++N
Sbjct: 64 VTQ-EHRFNTLAELVHHHSKN 83

ABL-family proteins are highly conserved tyrosine kinases. Each ABL protein contains an SH3-SH2-TK (Src homology 3-Src homology 2-tyrosine kinase) domain cassette, which confers autoregulated kinase activity and is common among nonreceptor tyrosine kinases. Several types of posttranslational modifications control ABL catalytic activity, subcellular localization, and stability, with consequences for both cytoplasmic and nuclear ABL functions. Binding partners provide additional regulation of ABL catalytic activity, substrate specificity, and downstream signaling. By combining this cassette with actin-binding and -bundling domain, ABL proteins are capable of connecting phosphoregulation with actin-filament reorganization. Vertebrate paralogs, ABL1 and ABL2, have evolved to perform specialized functions. ABL1 includes nuclear localization signals and a DNA binding domain which is used to mediate DNA damage-repair functions, while ABL2 has additional binding capacity for actin and for microtubules to enhance its cytoskeletal remodeling functions. SH2 is involved in several autoinhibitory mechanism that constrain the enzymatic activity of the ABL-family kinases. In one mechanism SH2 and SH3 cradle the kinase domain while a cap sequence stabilizes the inactive conformation resulting in a locked inactive state. Another involves phosphatidylinositol 4,5-bisphosphate (PIP2) which binds the SH2 domain through residues normally required for phosphotyrosine binding in the linker segment between the SH2 and kinase domains. The SH2 domain contributes to ABL catalytic activity and target site specificity. It is thought that the ABL catalytic site and SH2 pocket have coevolved to recognize the same sequences. Recent work now supports a hierarchical processivity model in which the substrate target site most compatible with ABL kinase domain preferences is phosphorylated with greatest efficiency. If this site is compatible with the ABL SH2 domain specificity, it will then reposition and dock in the SH2 pocket. This mechanism also explains how ABL kinases phosphorylates poor targets on the same substrate if they are properly positioned and how relatively poor substrate proteins might be recruited to ABL through a complex with strong substrates that can also dock with the SH2 pocket. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 94

>gnl|CDD|198271 cd10408, SH2_Nck1, Src homology 2 (SH2) domain found in Nck

 Score = 60.4 bits (146), Expect = 2e-13
 Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 7/91 (7%)

Query: 12  WYHGSVTRHEAENIL-RNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKF 70
           WY+G VTRH+AE  L    NEG +L+R+SES+  D+S+SLK+     H K+Q       +
Sbjct: 3   WYYGKVTRHQAEMALNERGNEGDFLIRDSESSPNDFSVSLKAQGKNKHFKVQLKECV--Y 60

Query: 71  ILGQFSAPFDSVPEMIQHFAENRLPILGAEH 101
            +GQ    F S+ E+++H+   + PI  +E 
Sbjct: 61  CIGQ--RKFSSMEELVEHY--KKAPIFTSEQ 87

Nck proteins are adaptors that modulate actin cytoskeleton dynamics by linking proline-rich effector molecules to tyrosine kinases or phosphorylated signaling intermediates. There are two members known in this family: Nck1 (Nckalpha) and Nck2 (Nckbeta and Growth factor receptor-bound protein 4 (Grb4)). They are characterized by having 3 SH3 domains and a C-terminal SH2 domain. Nck1 and Nck2 have overlapping functions as determined by gene knockouts. Both bind receptor tyrosine kinases and other tyrosine-phosphorylated proteins through their SH2 domains. In addition they also bind distinct targets. Neuronal signaling proteins: EphrinB1, EphrinB2, and Disabled-1 (Dab-1) all bind to Nck-2 exclusively. And in the case of PDGFR, Tyr(P)751 binds to Nck1 while Tyr(P)1009 binds to Nck2. Nck1 and Nck2 have a role in the infection process of enteropathogenic Escherichia coli (EPEC). Their SH3 domains are involved in recruiting and activating the N-WASP/Arp2/3 complex inducing actin polymerization resulting in the production of pedestals, dynamic bacteria-presenting protrusions of the plasma membrane. A similar thing occurs in the vaccinia virus where motile plasma membrane projections are formed beneath the virus. Recently it has been shown that the SH2 domains of both Nck1 and Nck2 bind the G-protein coupled receptor kinase-interacting protein 1 (GIT1) in a phosphorylation-dependent manner. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 97

>gnl|CDD|198178 cd09923, SH2_SOCS_family, Src homology 2 (SH2) domain found in suppressor of cytokine signaling (SOCS) family

 Score = 59.5 bits (145), Expect = 3e-13
 Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 15/85 (17%)

Query: 12 WYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFI 71
          WY G +TR+EAE +L    EG++LVR+S  +R  +S+S ++    +H +I+       + 
Sbjct: 2  WYWGGITRYEAEELLAGKPEGTFLVRDSSDSRYLFSVSFRTYGRTLHARIE-------YS 54

Query: 72 LGQFS--------APFDSVPEMIQH 88
           G+FS          F  V E+I+H
Sbjct: 55 NGRFSFDSSDPSVPRFPCVVELIEH 79

SH2 domain found in SOCS proteins. SOCS was first recognized as a group of cytokine-inducible SH2 (CIS) domain proteins comprising eight family members in human (CIS and SOCS1-SOCS7). In addition to the SH2 domain, SOCS proteins have a variable N-terminal domain and a conserved SOCS box in the C-terminal domain. SOCS proteins bind to a substrate via their SH2 domain. The prototypical members, CIS and SOCS1-SOCS3, have been shown to regulate growth hormone signaling in vitro and in a classic negative feedback response compete for binding at phosphotyrosine sites in JAK kinase and receptor pathways to displace effector proteins and target bound receptors for proteasomal degradation. Loss of SOCS activity results in excessive cytokine signaling associated with a variety of hematopoietic, autoimmune, and inflammatory diseases and certain cancers. Members (SOCS4-SOCS7) were identified by their conserved SOCS box, an adapter motif of 3 helices that associates substrate binding domains, such as the SOCS SH2 domain, ankryin, and WD40 with ubiquitin ligase components. These show limited cytokine induction. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 81

>gnl|CDD|198186 cd09932, SH2_C-SH2_PLC_gamma_like, C-terminal Src homology 2 (C-SH2) domain in Phospholipase C gamma

 Score = 59.2 bits (144), Expect = 6e-13
 Identities = 29/105 (27%), Positives = 64/105 (60%), Gaps = 11/105 (10%)

Query: 11  NWYHGSVTRHEAENIL-RNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGK 69
            W+H ++TR +AE +L R   +G++LVR SE++   +++S ++     H +I+++   G+
Sbjct: 5   EWFHANLTREQAEEMLMRVPRDGAFLVRPSETDPNSFAISFRAEGKIKHCRIKQE---GR 61

Query: 70  -FILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQLL 113
            F++G   + F+S+ E++ ++ ++ L       + L +P+ E+LL
Sbjct: 62  LFVIGT--SQFESLVELVSYYEKHPL----YRKIKLRYPVNEELL 100

Phospholipase C gamma is a signaling molecule that is recruited to the C-terminal tail of the receptor upon autophosphorylation of a highly conserved tyrosine. PLCgamma is composed of a Pleckstrin homology (PH) domain followed by an elongation factor (EF) domain, 2 catalytic regions of PLC domains that flank 2 tandem SH2 domains (N-SH2, C-SH2), and ending with a SH3 domain and C2 domain. N-SH2 SH2 domain-mediated interactions represent a crucial step in transmembrane signaling by receptor tyrosine kinases. SH2 domains recognize phosphotyrosine (pY) in the context of particular sequence motifs in receptor phosphorylation sites. Both N-SH2 and C-SH2 have a very similar binding affinity to pY. But in growth factor stimulated cells these domains bind to different target proteins. N-SH2 binds to pY containing sites in the C-terminal tails of tyrosine kinases and other receptors. Recently it has been shown that this interaction is mediated by phosphorylation-independent interactions between a secondary binding site found exclusively on the N-SH2 domain and a region of the FGFR1 tyrosine kinase domain. This secondary site on the SH2 cooperates with the canonical pY site to regulate selectivity in mediating a specific cellular process. C-SH2 binds to an intramolecular site on PLCgamma itself which allows it to hydrolyze phosphatidylinositol-4,5-bisphosphate into diacylglycerol and inositol triphosphate. These then activate protein kinase C and release calcium. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 104

>gnl|CDD|198200 cd10337, SH2_BCAR3, Src homology 2 (SH2) domain in the Breast Cancer Anti-estrogen Resistance protein 3

 Score = 59.3 bits (144), Expect = 1e-12
 Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 11/92 (11%)

Query: 12 WYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRD---PDTG 68
          WYHG + R  AE++++   EG +LVR+S S+  DY L+ +     +H KI R    P   
Sbjct: 8  WYHGRIPRQVAESLVQ--REGDFLVRDSLSSPGDYVLTCRWKGQPLHFKINRVVLRPSEA 65

Query: 69 K----FILGQFSAPFDSVPEMIQHFAENRLPI 96
               +        FDS+P ++  +  NR PI
Sbjct: 66 YTRVQYQFEDEQ--FDSIPALVHFYVGNRRPI 95

BCAR3 is part of a growing family of guanine nucleotide exchange factors is responsible for activation of Ras-family GTPases, including Sos1 and 2, GRF1 and 2, CalDAG-GEF/GRP1-4, C3G, cAMP-GEF/Epac 1 and 2, PDZ-GEFs, MR-GEF, RalGDS family members, RalGPS, RasGEF, Smg GDS, and phospholipase C(epsilon). 12102558 21262352 BCAR3 binds to the carboxy-terminus of BCAR1/p130Cas, a focal adhesion adapter protein. Over expression of BCAR1 (p130Cas) and BCAR3 induces estrogen independent growth in normally estrogen-dependent cell lines. They have been linked to resistance to anti-estrogens in breast cancer, Rac activation, and cell motility, though the BCAR3/p130Cas complex is not required for this activity in BCAR3. Many BCAR3-mediated signaling events in epithelial and mesenchymal cells are independent of p130Cas association. Structurally these proteins contain a single SH2 domain upstream of their RasGEF domain, which is responsible for the ability of BCAR3 to enhance p130Cas over-expression-induced migration. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 136

>gnl|CDD|198195 cd09942, SH2_nSH2_p85_like, N-terminal Src homology 2 (nSH2) domain found in p85

 Score = 58.5 bits (142), Expect = 2e-12
 Identities = 36/112 (32%), Positives = 61/112 (54%), Gaps = 16/112 (14%)

Query: 4   PKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKI-Q 62
           P  L +  WY G ++R E    +R++ +G++LVR++ + + DY+L+L+       +KI  
Sbjct: 1   PHSLQEAEWYWGDISREEVNEKMRDTPDGTFLVRDASTMKGDYTLTLRKGGNNKLIKIFH 60

Query: 63  RDPDTGKFILGQFSAP--FDSVPEMIQHFAENRL----PILGAEHMCLLHPM 108
           RD   GK+    FS P  F+SV E+I ++  N L      L    + LL+P+
Sbjct: 61  RD---GKY---GFSDPLTFNSVVELINYYRNNSLAEYNRKL---DVKLLYPV 103

Phosphoinositide 3-kinases (PI3Ks) are essential for cell growth, migration, and survival. p110, the catalytic subunit, is composed of an adaptor-binding domain, a Ras-binding domain, a C2 domain, a helical domain, and a kinase domain. The regulatory unit is called p85 and is composed of an SH3 domain, a RhoGap domain, a N-terminal SH2 (nSH2) domain, an internal SH2 (iSH2) domain, and C-terminal (cSH2) domain. There are 2 inhibitory interactions between p110alpha and p85 of P13K: (1) p85 nSH2 domain with the C2, helical, and kinase domains of p110alpha and (2) p85 iSH2 domain with C2 domain of p110alpha. There are 3 inhibitory interactions between p110beta and p85 of P13K: (1) p85 nSH2 domain with the C2, helical, and kinase domains of p110beta, (2) p85 iSH2 domain with C2 domain of p110alpha, and (3) p85 cSH2 domain with the kinase domain of p110alpha. It is interesting to note that p110beta is oncogenic as a wild type protein while p110alpha lacks this ability. One explanation is the idea that the regulation of p110beta by p85 is unique because of the addition of inhibitory contacts from the cSH2 domain and the loss of contacts in the iSH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 110

>gnl|CDD|198217 cd10354, SH2_Cterm_RasGAP, C-terminal Src homology 2 (SH2) domain found in Ras GTPase-activating protein 1 (GAP)

 Score = 56.3 bits (136), Expect = 5e-12
 Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 4/79 (5%)

Query: 12 WYHGSVTRHEAENIL-RNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKF 70
          W+HG ++R EA N+L +    GS+LVR S++   DYSLS +   G  H KI    +    
Sbjct: 2  WFHGKISREEAYNMLVKVGGPGSFLVRESDNTPGDYSLSFRVNEGIKHFKIIPTGNNQFM 61

Query: 71 ILGQFSAPFDSVPEMIQHF 89
          + G++   F S+ ++I  +
Sbjct: 62 MGGRY---FSSLDDVIDRY 77

RasGAP is part of the GAP1 family of GTPase-activating proteins. The protein is located in the cytoplasm and stimulates the GTPase activity of normal RAS p21, but not its oncogenic counterpart. Acting as a suppressor of RAS function, the protein enhances the weak intrinsic GTPase activity of RAS proteins resulting in RAS inactivation, thereby allowing control of cellular proliferation and differentiation. Mutations leading to changes in the binding sites of either protein are associated with basal cell carcinomas. Alternative splicing results in two isoforms. The shorter isoform which lacks the N-terminal hydrophobic region, has the same activity, and is expressed in placental tissues. In general longer isoform contains 2 SH2 domains, a SH3 domain, a pleckstrin homology (PH) domain, and a calcium-dependent phospholipid-binding C2 domain. The C-terminus contains the catalytic domain of RasGap which catalyzes the activation of Ras by hydrolyzing GTP-bound active Ras into an inactive GDP-bound form of Ras. This model contains the C-terminal SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 77

>gnl|CDD|198233 cd10370, SH2_Src_Src42, Src homology 2 (SH2) domain found in the Src oncogene at 42A (Src42)

 Score = 56.7 bits (137), Expect = 6e-12
 Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 4/80 (5%)

Query: 12 WYHGSVTRHEAEN-ILRNSNE-GSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGK 69
          WY G + R EAE  +L   NE G++L+R+SES   DYSLS++      H +I R  D G 
Sbjct: 5  WYFGKIKRIEAEKKLLLPENEHGAFLIRDSESRHNDYSLSVRDGDTVKHYRI-RQLDEGG 63

Query: 70 FILGQFSAPFDSVPEMIQHF 89
          F + +    F ++ E+++H+
Sbjct: 64 FFIAR-RTTFRTLQELVEHY 82

Src42 is a member of the Src non-receptor type tyrosine kinase family of proteins. The integration of receptor tyrosine kinase-induced RAS and Src42 signals by Connector eNhancer of KSR (CNK) as a two-component input is essential for RAF activation in Drosophila. Src42 is present in a wide variety of organisms including: California sea hare, pea aphid, yellow fever mosquito, honey bee, Panamanian leafcutter ant, and sea urchin. Src42 has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. Like the other members of the Src family the SH2 domain in addition to binding the target, also plays an autoinhibitory role by binding to its C-terminal tail. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 96

>gnl|CDD|198218 cd10355, SH2_DAPP1_BAM32_like, Src homology 2 domain found in dual adaptor for phosphotyrosine and 3-phosphoinositides ( DAPP1)/B lymphocyte adaptor molecule of 32 kDa (Bam32)-like proteins

 Score = 55.9 bits (135), Expect = 1e-11
 Identities = 33/90 (36%), Positives = 53/90 (58%), Gaps = 7/90 (7%)

Query: 12  WYHGSVTRHEAENIL-RNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKF 70
           WYHG++TRH AE +L  N  +GSYL+RNS      +SLS+++     H  ++    + KF
Sbjct: 8   WYHGNLTRHAAEALLLSNGVDGSYLLRNSNEGTGLFSLSVRAKDSVKHFHVEYTGYSFKF 67

Query: 71  ILGQFSAPFDSVPEMIQHFAENRLPILGAE 100
              +FS    S+ + ++HFA    P++G+E
Sbjct: 68  GFNEFS----SLQDFVKHFANQ--PLIGSE 91

DAPP1/Bam32 contains a putative myristoylation site at its N-terminus, followed by a SH2 domain, and a pleckstrin homology (PH) domain at its C-terminus. DAPP1 could potentially be recruited to the cell membrane by any of these domains. Its putative myristoylation site could facilitate the interaction of DAPP1 with the lipid bilayer. Its SH2 domain may also interact with phosphotyrosine residues on membrane-associated proteins such as activated tyrosine kinase receptors. And finally its PH domain exhibits a high-affinity interaction with the PtdIns(3,4,5)P(3) PtdIns(3,4)P(2) second messengers produced at the cell membrane following the activation of PI 3-kinases. DAPP1 is thought to interact with both tyrosine phosphorylated proteins and 3-phosphoinositides and therefore may play a role in regulating the location and/or activity of such proteins(s) in response to agonists that elevate PtdIns(3,4,5)P(3) and PtdIns(3,4)P(2). This protein is likely to play an important role in triggering signal transduction pathways that lie downstream from receptor tyrosine kinases and PI 3-kinase. It is likely that DAPP1 functions as an adaptor to recruit other proteins to the plasma membrane in response to extracellular signals. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 92

>gnl|CDD|198203 cd10340, SH2_N-SH2_SHP_like, N-terminal Src homology 2 (N-SH2) domain found in SH2 domain Phosphatases (SHP) proteins

 Score = 55.5 bits (134), Expect = 2e-11
 Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 4/83 (4%)

Query: 11 NWYHGSVTRHEAENILRNSNE-GSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGK 69
           W+H  ++  EAEN+L+     GS+L R S+SN  D++LS++      H+KIQ   +TG 
Sbjct: 1  RWFHPVISGIEAENLLKTRGVDGSFLARPSKSNPGDFTLSVRRGDEVTHIKIQ---NTGD 57

Query: 70 FILGQFSAPFDSVPEMIQHFAEN 92
          +        F ++ E++Q++ E 
Sbjct: 58 YYDLYGGEKFATLSELVQYYMEQ 80

The SH2 domain phosphatases (SHP-1, SHP-2/Syp, Drosophila corkscrew (csw), and Caenorhabditis elegans Protein Tyrosine Phosphatase (Ptp-2)) are cytoplasmic signaling enzymes. They are both targeted and regulated by interactions of their SH2 domains with phosphotyrosine docking sites. These proteins contain two SH2 domains (N-SH2, C-SH2) followed by a tyrosine phosphatase (PTP) domain, and a C-terminal extension. Shp1 and Shp2 have two tyrosyl phosphorylation sites in their C-tails, which are phosphorylated differentially by receptor and nonreceptor PTKs. Csw retains the proximal tyrosine and Ptp-2 lacks both sites. Shp-binding proteins include receptors, scaffolding adapters, and inhibitory receptors. Some of these bind both Shp1 and Shp2 while others bind only one. Most proteins that bind a Shp SH2 domain contain one or more immuno-receptor tyrosine-based inhibitory motifs (ITIMs): [IVL]xpYxx[IVL]. Shp1 N-SH2 domain blocks the catalytic domain and keeps the enzyme in the inactive conformation, and is thus believed to regulate the phosphatase activity of SHP-1. Its C-SH2 domain is thought to be involved in searching for phosphotyrosine activators. The SHP2 N-SH2 domain is a conformational switch; it either binds and inhibits the phosphatase, or it binds phosphoproteins and activates the enzyme. The C-SH2 domain contributes binding energy and specificity, but it does not have a direct role in activation. Csw SH2 domain function is essential, but either SH2 domain can fulfill this requirement. The role of the csw SH2 domains during Sevenless receptor tyrosine kinase (SEV) signaling is to bind Daughter of Sevenless rather than activated SEV. Ptp-2 acts in oocytes downstream of sheath/oocyte gap junctions to promote major sperm protein (MSP)-induced MAP Kinase (MPK-1) phosphorylation. Ptp-2 functions in the oocyte cytoplasm, not at the cell surface to inhibit multiple RasGAPs, resulting in sustained Ras activation. It is thought that MSP triggers PTP-2/Ras activation and ROS production to stimulate MPK-1 activity essential for oocyte maturation and that secreted MSP domains and Cu/Zn superoxide dismutases function antagonistically to control ROS and MAPK signaling. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 99

>gnl|CDD|198230 cd10367, SH2_Src_Fgr, Src homology 2 (SH2) domain found in Gardner-Rasheed feline sarcoma viral (v-fgr) oncogene homolog, Fgr

 Score = 54.9 bits (132), Expect = 4e-11
 Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 9/87 (10%)

Query: 12 WYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLK---SARG--FMHMKIQRD 64
          WY G + R +AE  L +     G++L+R SE+ +  YSLS++     RG    H KI R 
Sbjct: 5  WYFGKIGRKDAERQLLSPGNPRGAFLIRESETTKGAYSLSIRDWDQNRGDHVKHYKI-RK 63

Query: 65 PDTGKFILGQFSAPFDSVPEMIQHFAE 91
           DTG + +    A FD+V E++QH+ E
Sbjct: 64 LDTGGYYITT-RAQFDTVQELVQHYME 89

Fgr is a member of the Src non-receptor type tyrosine kinase family of proteins. The protein contains N-terminal sites for myristoylation and palmitoylation, a PTK domain, and SH2 and SH3 domains which are involved in mediating protein-protein interactions with phosphotyrosine-containing and proline-rich motifs, respectively. Fgr is expressed in B-cells and myeloid cells, localizes to plasma membrane ruffles, and functions as a negative regulator of cell migration and adhesion triggered by the beta-2 integrin signal transduction pathway. Multiple alternatively spliced variants, encoding the same protein, have been identified Fgr has been shown to interact with Wiskott-Aldrich syndrome protein. Fgr has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|198211 cd10348, SH2_Cterm_shark_like, C-terminal Src homology 2 (SH2) domain found in SH2 domains, ANK, and kinase domain (shark) proteins

 Score = 53.6 bits (129), Expect = 7e-11
 Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 6/81 (7%)

Query: 12 WYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGK 69
          W HG++ R+EA  IL+     +GS+LVR S      Y L+L       H +IQ   D   
Sbjct: 2  WLHGALDRNEAVEILKQKADADGSFLVRYSRRRPGGYVLTLVYENHVYHFEIQNRDDKWF 61

Query: 70 FILGQFSAP-FDSVPEMIQHF 89
          +I      P F+S+  +I+H+
Sbjct: 62 YI---DDGPYFESLEHLIEHY 79

These non-receptor protein-tyrosine kinases contain two SH2 domains, five ankyrin (ANK)-like repeats, and a potential tyrosine phosphorylation site in its carboxyl-terminal tail which resembles the phosphorylation site in members of the src family. Like, mammalian non-receptor protein-tyrosine kinases, ZAP-70 and syk proteins, they do not have SH3 domains. However, the presence of ANK makes these unique among protein-tyrosine kinases. Both tyrosine kinases and ANK repeats have been shown to transduce developmental signals, and SH2 domains are known to participate intimately in tyrosine kinase signaling. These tyrosine kinases are believed to be involved in epithelial cell polarity. The members of this family include the shark (SH2 domains, ANK, and kinase domain) gene in Drosophila and yellow fever mosquitos, as well as the hydra protein HTK16. Drosophila Shark is proposed to transduce intracellularly the Crumbs, a protein necessary for proper organization of ectodermal epithelia, intercellular signal. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 86

>gnl|CDD|198285 cd10718, SH2_CIS, Src homology 2 (SH2) domain found in cytokine-inducible SH2-containing protein (CIS)

 Score = 53.6 bits (129), Expect = 8e-11
 Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 12/91 (13%)

Query: 7  LDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDY--SLSLKSARGFMHMKIQRD 64
          L +  WY GS+T  EA   L+ + EG++LVR  +S+ P Y  +LS+K+ RG  +++I+  
Sbjct: 1  LRESGWYWGSITASEAHQALQKAPEGTFLVR--DSSHPSYMLTLSVKTTRGPTNVRIEY- 57

Query: 65 PDTGKFILGQFSA------PFDSVPEMIQHF 89
             G F L   S        F  V  ++QH+
Sbjct: 58 -SDGSFRLDSSSLARPRLLSFPDVVSLVQHY 87

CIS family members are known to be cytokine-inducible negative regulators of cytokine signaling. The expression of the CIS gene can be induced by IL2, IL3, GM-CSF and EPO in hematopoietic cells. Proteasome-mediated degradation of this protein has been shown to be involved in the inactivation of the erythropoietin receptor. Suppressor of cytokine signalling (SOCS) was first recognized as a group of cytokine-inducible SH2 (CIS) domain proteins comprising eight family members in human (CIS and SOCS1-SOCS7). In addition to the SH2 domain, SOCS proteins have a variable N-terminal domain and a conserved SOCS box in the C-terminal domain. SOCS proteins bind to a substrate via their SH2 domain. The prototypical members, CIS and SOCS1-SOCS3, have been shown to regulate growth hormone signaling in vitro and in a classic negative feedback response compete for binding at phosphotyrosine sites in JAK kinase and receptor pathways to displace effector proteins and target bound receptors for proteasomal degradation. Loss of SOCS activity results in excessive cytokine signaling associated with a variety of hematopoietic, autoimmune, and inflammatory diseases and certain cancers. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 88

>gnl|CDD|198185 cd09931, SH2_C-SH2_SHP_like, C-terminal Src homology 2 (C-SH2) domain found in SH2 domain Phosphatases (SHP) proteins

 Score = 53.4 bits (129), Expect = 1e-10
 Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 5/98 (5%)

Query: 12  WYHGSVTRHEAENILRNSNE-GSYLVRNSESNRPDYSLSLKSARG-FMHMKIQRDPDTGK 69
           W+HG ++  EAE +L    + GS+LVR S+S   D+ LS+++      H+ I+       
Sbjct: 2   WFHGHLSGKEAEKLLLEKGKPGSFLVRESQSKPGDFVLSVRTDDDKVTHIMIRCQGGKYD 61

Query: 70  FILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHP 107
              G+    FDS+ ++++H+ +N +       + L  P
Sbjct: 62  VGGGE---EFDSLTDLVEHYKKNPMVETSGTVVHLKQP 96

The SH2 domain phosphatases (SHP-1, SHP-2/Syp, Drosophila corkscrew (csw), and Caenorhabditis elegans Protein Tyrosine Phosphatase (Ptp-2)) are cytoplasmic signaling enzymes. They are both targeted and regulated by interactions of their SH2 domains with phosphotyrosine docking sites. These proteins contain two SH2 domains (N-SH2, C-SH2) followed by a tyrosine phosphatase (PTP) domain, and a C-terminal extension. Shp1 and Shp2 have two tyrosyl phosphorylation sites in their C-tails, which are phosphorylated differentially by receptor and nonreceptor PTKs. Csw retains the proximal tyrosine and Ptp-2 lacks both sites. Shp-binding proteins include receptors, scaffolding adapters, and inhibitory receptors. Some of these bind both Shp1 and Shp2 while others bind only one. Most proteins that bind a Shp SH2 domain contain one or more immuno-receptor tyrosine-based inhibitory motifs (ITIMs): [SIVL]xpYxx[IVL]. Shp1 N-SH2 domain blocks the catalytic domain and keeps the enzyme in the inactive conformation, and is thus believed to regulate the phosphatase activity of SHP-1. Its C-SH2 domain is thought to be involved in searching for phosphotyrosine activators. The SHP2 N-SH2 domain is a conformational switch; it either binds and inhibits the phosphatase, or it binds phosphoproteins and activates the enzyme. The C-SH2 domain contributes binding energy and specificity, but it does not have a direct role in activation. Csw SH2 domain function is essential, but either SH2 domain can fulfill this requirement. The role of the csw SH2 domains during Sevenless receptor tyrosine kinase (SEV) signaling is to bind Daughter of Sevenless rather than activated SEV. Ptp-2 acts in oocytes downstream of sheath/oocyte gap junctions to promote major sperm protein (MSP)-induced MAP Kinase (MPK-1) phosphorylation. Ptp-2 functions in the oocyte cytoplasm, not at the cell surface to inhibit multiple RasGAPs, resulting in sustained Ras activation. It is thought that MSP triggers PTP-2/Ras activation and ROS production to stimulate MPK-1 activity essential for oocyte maturation and that secreted MSP domains and Cu/Zn superoxide dismutases function antagonistically to control ROS and MAPK signaling. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 99

>gnl|CDD|198250 cd10387, SH2_SOCS6, Src homology 2 (SH2) domain found in suppressor of cytokine signaling (SOCS) proteins

 Score = 53.3 bits (128), Expect = 1e-10
 Identities = 29/84 (34%), Positives = 44/84 (52%)

Query: 5  KPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRD 64
          K L ++ WY G +TR EAE  L N  +GS+LVR+S  +R   SLS +S    +H +I+  
Sbjct: 5  KKLAKQGWYWGPITRWEAEGKLANVPDGSFLVRDSSDDRYLLSLSFRSHGKTLHTRIEHS 64

Query: 65 PDTGKFILGQFSAPFDSVPEMIQH 88
               F          S+ ++I+H
Sbjct: 65 NGRFSFYEQPDVEGHTSIVDLIEH 88

SH2 domain found in SOCS proteins. SOCS was first recognized as a group of cytokine-inducible SH2 (CIS) domain proteins comprising eight family members in human (CIS and SOCS1-SOCS7). In addition to the SH2 domain, SOCS proteins have a variable N-terminal domain and a conserved SOCS box in the C-terminal domain. SOCS proteins bind to a substrate via their SH2 domain. The prototypical members, CIS and SOCS1-SOCS3, have been shown to regulate growth hormone signaling in vitro and in a classic negative feedback response compete for binding at phosphotyrosine sites in JAK kinase and receptor pathways to displace effector proteins and target bound receptors for proteasomal degradation. Loss of SOCS activity results in excessive cytokine signaling associated with a variety of hematopoietic, autoimmune, and inflammatory diseases and certain cancers. Members (SOCS4-SOCS7) were identified by their conserved SOCS box, an adapter motif of 3 helices that associates substrate binding domains, such as the SOCS SH2 domain, ankryin, and WD40 with ubiquitin ligase components. These show limited cytokine induction. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 100

>gnl|CDD|198179 cd09925, SH2_SHC, Src homology 2 (SH2) domain found in SH2 adaptor protein C (SHC)

 Score = 52.7 bits (127), Expect = 3e-10
 Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 13/106 (12%)

Query: 6   PLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDP 65
            L    WYHG ++R +AE++L+   +G +LVR S +    Y L+        H+ +  DP
Sbjct: 3   QLRGEPWYHGKMSRRDAESLLQ--TDGDFLVRESTTTPGQYVLTGMQNGQPKHL-LLVDP 59

Query: 66  DTGKFILGQFS---APFDSVPEMIQHFAENRLPILGAEHM-CLLHP 107
           +      G        F+S+  +I +   N LPI+       L  P
Sbjct: 60  E------GVVRTKDRVFESISHLINYHVTNGLPIISEGSELHLRRP 99

SHC is involved in a wide variety of pathways including regulating proliferation, angiogenesis, invasion and metastasis, and bone metabolism. An adapter protein, SHC has been implicated in Ras activation following the stimulation of a number of different receptors, including growth factors [insulin, epidermal growth factor (EGF), nerve growth factor, and platelet derived growth factor (PDGF)], cytokines [interleukins 2, 3, and 5], erythropoietin, and granulocyte/macrophage colony-stimulating factor, and antigens [T-cell and B-cell receptors]. SHC has been shown to bind to tyrosine-phosphorylated receptors, and receptor stimulation leads to tyrosine phosphorylation of SHC. Upon phosphorylation, SHC interacts with another adapter protein, Grb2, which binds to the Ras GTP/GDP exchange factor mSOS which leads to Ras activation. SHC is composed of an N-terminal domain that interacts with proteins containing phosphorylated tyrosines, a (glycine/proline)-rich collagen-homology domain that contains the phosphorylated binding site, and a C-terminal SH2 domain. SH2 has been shown to interact with the tyrosine-phosphorylated receptors of EGF and PDGF and with the tyrosine-phosphorylated C chain of the T-cell receptor, providing one of the mechanisms of T-cell-mediated Ras activation. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 104

>gnl|CDD|198215 cd10352, SH2_a2chimerin_b2chimerin, Src homology 2 (SH2) domain found in alpha2-chimerin and beta2-chimerin proteins

 Score = 52.0 bits (125), Expect = 4e-10
 Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 2/74 (2%)

Query: 13 YHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFIL 72
          YHG ++R EAE +L  +++GSYL+R S  +   Y+LSL+      + K+  D       +
Sbjct: 9  YHGLISREEAEQLLSGASDGSYLIRESSRDDGYYTLSLRFNGKVKNYKLYYDGKNHYHYV 68

Query: 73 GQFSAPFDSVPEMI 86
          G+    FD++ +++
Sbjct: 69 GEKR--FDTIHDLV 80

Chimerins are a family of phorbol ester- and diacylglycerol-responsive GTPase-activating proteins. Alpha1-chimerin (formerly known as n-chimerin) and alpha2-chimerin are alternatively spliced products of a single gene, as are beta1- and beta2-chimerin. alpha1- and beta1-chimerin have a relatively short N-terminal region that does not encode any recognizable domains, whereas alpha2- and beta2-chimerin both include a functional SH2 domain that can bind to phosphotyrosine motifs within receptors. All of the isoforms contain a GAP domain with specificity in vitro for Rac1 and a diacylglycerol (DAG)-binding C1 domain which allows them to translocate to membranes in response to DAG signaling and anchors them in close proximity to activated Rac. Other C1 domain-containing diacylglycerol receptors including: PKC, Munc-13 proteins, phorbol ester binding scaffolding proteins involved in Ca2+-stimulated exocytosis, and RasGRPs, diacylglycerol-activated guanine-nucleotide exchange factors (GEFs) for Ras and Rap1. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 91

>gnl|CDD|199831 cd10369, SH2_Src_Frk, Src homology 2 (SH2) domain found in the Fyn-related kinase (Frk)

 Score = 52.2 bits (125), Expect = 4e-10
 Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 4/83 (4%)

Query: 12 WYHGSVTRHEAENIL--RNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGK 69
          W+ G++ R +AE  L    +  G++L+R SES + ++SLS+       H +I+R  D G 
Sbjct: 5  WFFGAIKRADAEKQLLYSENQTGAFLIRESESQKGEFSLSVLDGGVVKHYRIRR-LDEGG 63

Query: 70 FILGQFSAPFDSVPEMIQHFAEN 92
          F L +    F ++ E + ++   
Sbjct: 64 FFLTRRKT-FSTLNEFVNYYTTT 85

Frk is a member of the Src non-receptor type tyrosine kinase family of proteins. The Frk subfamily is composed of Frk/Rak and Iyk/Bsk/Gst. It is expressed primarily epithelial cells. Frk is a nuclear protein and may function during G1 and S phase of the cell cycle and suppress growth. Unlike the other Src members it lacks a glycine at position 2 of SH4 which is important for addition of a myristic acid moiety that is involved in targeting Src PTKs to cellular membranes. FRK and SHB exert similar effects when overexpressed in rat phaeochromocytoma (PC12) and beta-cells, where both induce PC12 cell differentiation and beta-cell proliferation. Under conditions that cause beta-cell degeneration these proteins augment beta-cell apoptosis. The FRK-SHB responses involve FAK and insulin receptor substrates (IRS) -1 and -2. Frk has been demonstrated to interact with retinoblastoma protein. Frk regulates PTEN protein stability by phosphorylating PTEN, which in turn prevents PTEN degradation. Frk also plays a role in regulation of embryonal pancreatic beta cell formation. Frk has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. Like the other members of the Src family the SH2 domain in addition to binding the target, also plays an autoinhibitory role by binding to its activation loop. The tryosine involved is at the same site as the tyrosine involved in the autophosphorylation of Src. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 96

>gnl|CDD|198229 cd10366, SH2_Src_Yes, Src homology 2 (SH2) domain found in Yes

 Score = 51.9 bits (124), Expect = 5e-10
 Identities = 30/88 (34%), Positives = 52/88 (59%), Gaps = 9/88 (10%)

Query: 12 WYHGSVTRHEAENILRN--SNEGSYLVRNSESNRPDYSLSLK---SARG--FMHMKIQRD 64
          WY G + R +AE +L N  +  G +LVR SE+ +  YSLS++     RG    H KI++ 
Sbjct: 5  WYFGKMGRKDAERLLLNPGNQRGIFLVRESETTKGAYSLSIRDWDEVRGDNVKHYKIRKL 64

Query: 65 PDTGKFILGQFSAPFDSVPEMIQHFAEN 92
           + G +I  +  A FD++ ++++H+ E+
Sbjct: 65 DNGGYYITTR--AQFDTLQKLVKHYTEH 90

Yes is a member of the Src non-receptor type tyrosine kinase family of proteins. Yes is the cellular homolog of the Yamaguchi sarcoma virus oncogene. In humans it is encoded by the YES1 gene which maps to chromosome 18 and is in close proximity to thymidylate synthase. A corresponding Yes pseudogene has been found on chromosome 22. YES1 has been shown to interact with Janus kinase 2, CTNND1,RPL10, and Occludin. Yes1 has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|198281 cd10418, SH2_Src_Fyn_isoform_a_like, Src homology 2 (SH2) domain found in Fyn isoform a like proteins

 Score = 51.5 bits (123), Expect = 7e-10
 Identities = 28/89 (31%), Positives = 52/89 (58%), Gaps = 9/89 (10%)

Query: 10 RNWYHGSVTRHEAE-NILRNSN-EGSYLVRNSESNRPDYSLSLK---SARG--FMHMKIQ 62
            WY G + R +AE  +L   N  G++L+R SE+ +  YSLS++     +G    H KI+
Sbjct: 3  EEWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIR 62

Query: 63 RDPDTGKFILGQFSAPFDSVPEMIQHFAE 91
          +  + G +I  +  A F+++ +++QH++E
Sbjct: 63 KLDNGGYYITTR--AQFETLQQLVQHYSE 89

Fyn is a member of the Src non-receptor type tyrosine kinase family of proteins. This cd contains the SH2 domain found in Fyn isoform a type proteins. Fyn is involved in the control of cell growth and is required in the following pathways: T and B cell receptor signaling, integrin-mediated signaling, growth factor and cytokine receptor signaling, platelet activation, ion channel function, cell adhesion, axon guidance, fertilization, entry into mitosis, and differentiation of natural killer cells, oligodendrocytes and keratinocytes. The protein associates with the p85 subunit of phosphatidylinositol 3-kinase and interacts with the Fyn-binding protein. Alternatively spliced transcript variants encoding distinct isoforms exist. Fyn is primarily localized to the cytoplasmic leaflet of the plasma membrane. Tyrosine phosphorylation of target proteins by Fyn serves to either regulate target protein activity, and/or to generate a binding site on the target protein that recruits other signaling molecules. FYN has been shown to interact with a number of proteins including: BCAR1, Cbl, Janus kinase, nephrin, Sky, tyrosine kinase, Wiskott-Aldrich syndrome protein, and Zap-70. Fyn has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|198214 cd10351, SH2_SH2D4B, Src homology 2 domain found in the SH2 domain containing protein 4B (SH2D4B)

 Score = 51.0 bits (122), Expect = 1e-09
 Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 12 WYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFI 71
          W+HG ++R EAE +L N+ EGS+LVR SE     Y+LS +   GF H  +    D   F+
Sbjct: 9  WFHGIISREEAEALLMNATEGSFLVRVSEKIW-GYTLSYRLQSGFKHFLVDASGDFYSFL 67

SH2D4B contains a single SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 103

>gnl|CDD|199829 cd10341, SH2_N-SH2_PLC_gamma_like, N-terminal Src homology 2 (N-SH2) domain in Phospholipase C gamma

 Score = 50.8 bits (122), Expect = 1e-09
 Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 8/91 (8%)

Query: 11 NWYHGSVT--RHEAENILR---NSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDP 65
           W+HG +   R EAE +L       +G++LVR SE+   DY+LS        H +I+   
Sbjct: 5  PWFHGKLGDGRDEAEKLLLEYCEGGDGTFLVRESETFVGDYTLSFWRNGKVQHCRIRSRQ 64

Query: 66 DTG--KFILGQFSAPFDSVPEMIQHFAENRL 94
          + G  K+ L   +  FDS+ E+I ++ +N L
Sbjct: 65 ENGEKKYYLTD-NLVFDSLYELIDYYRQNPL 94

Phospholipase C gamma is a signaling molecule that is recruited to the C-terminal tail of the receptor upon autophosphorylation of a highly conserved tyrosine. PLCgamma is composed of a Pleckstrin homology (PH) domain followed by an elongation factor (EF) domain, 2 catalytic regions of PLC domains that flank 2 tandem SH2 domains (N-SH2, C-SH2), and ending with a SH3 domain and C2 domain. N-SH2 SH2 domain-mediated interactions represent a crucial step in transmembrane signaling by receptor tyrosine kinases. SH2 domains recognize phosphotyrosine (pY) in the context of particular sequence motifs in receptor phosphorylation sites. Both N-SH2 and C-SH2 have a very similar binding affinity to pY. But in growth factor stimulated cells these domains bind to different target proteins. N-SH2 binds to pY containing sites in the C-terminal tails of tyrosine kinases and other receptors. Recently it has been shown that this interaction is mediated by phosphorylation-independent interactions between a secondary binding site found exclusively on the N-SH2 domain and a region of the FGFR1 tyrosine kinase domain. This secondary site on the SH2 cooperates with the canonical pY site to regulate selectivity in mediating a specific cellular process. C-SH2 binds to an intramolecular site on PLCgamma itself which allows it to hydrolyze phosphatidylinositol-4,5-bisphosphate into diacylglycerol and inositol triphosphate. These then activate protein kinase C and release calcium. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 99

>gnl|CDD|198191 cd09938, SH2_N-SH2_Zap70_Syk_like, N-terminal Src homology 2 (SH2) domain found in Zeta-chain-associated protein kinase 70 (ZAP-70) and Spleen tyrosine kinase (Syk) proteins

 Score = 50.5 bits (121), Expect = 2e-09
 Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 4/83 (4%)

Query: 11 NWYHGSVTRHEAENILR--NSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTG 68
           +++GS+TR EAE  L+    ++G +L+R S  +   Y LS+   R F H  I+R  +  
Sbjct: 2  PFFYGSITREEAEEYLKLAGMSDGLFLLRQSLRSLGGYVLSVCHGRKFHHYTIERQLNGT 61

Query: 69 KFILGQFSAPFDSVPEMIQHFAE 91
            I G          E+ ++ + 
Sbjct: 62 YAIAG--GKAHCGPAELCEYHST 82

ZAP-70 and Syk comprise a family of hematopoietic cell specific protein tyrosine kinases (PTKs) that are required for antigen and antibody receptor function. ZAP-70 is expressed in T and natural killer (NK) cells and Syk is expressed in B cells, mast cells, polymorphonuclear leukocytes, platelets, macrophages, and immature T cells. They are required for the proper development of T and B cells, immune receptors, and activating NK cells. They consist of two N-terminal Src homology 2 (SH2) domains and a C-terminal kinase domain separated from the SH2 domains by a linker or hinge region. Phosphorylation of both tyrosine residues within the Immunoreceptor Tyrosine-based Activation Motifs (ITAM; consensus sequence Yxx[LI]x(7,8)Yxx[LI]) by the Src-family PTKs is required for efficient interaction of ZAP-70 and Syk with the receptor subunits and for receptor function. ZAP-70 forms two phosphotyrosine binding pockets, one of which is shared by both SH2 domains. In Syk the two SH2 domains do not form such a phosphotyrosine-binding site. The SH2 domains here are believed to function independently. In addition, the two SH2 domains of Syk display flexibility in their relative orientation, allowing Syk to accommodate a greater variety of spacing sequences between the ITAM phosphotyrosines and singly phosphorylated non-classical ITAM ligands. This model contains the N-terminus SH2 domains of both Syk and Zap70. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 104

>gnl|CDD|198188 cd09934, SH2_Tec_family, Src homology 2 (SH2) domain found in Tec-like proteins

 Score = 50.1 bits (120), Expect = 2e-09
 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 20/97 (20%)

Query: 7  LDQRNWYHGSVTRHEAENILR-NSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDP 65
          L++  WY G ++R  AE++L+    EG ++VRNS S +  Y++SL         K+   P
Sbjct: 3  LEKYEWYVGDMSRQRAESLLKQEDKEGCFVVRNS-STKGLYTVSL-------FTKVPGSP 54

Query: 66 ----------DTGKFILGQFSAPFDSVPEMIQHFAEN 92
                       +F L +    F+++PE+I +   N
Sbjct: 55 HVKHYHIKQNARSEFYLAEKHC-FETIPELINYHQHN 90

The Tec protein tyrosine kinase is the founding member of a family that includes Btk, Itk, Bmx, and Txk. The members have a PH domain, a zinc-binding motif, a SH3 domain, a SH2 domain, and a protein kinase catalytic domain. Btk is involved in B-cell receptor signaling with mutations in Btk responsible for X-linked agammaglobulinemia (XLA) in humans and X-linked immunodeficiency (xid) in mice. Itk is involved in T-cell receptor signaling. Tec is expressed in both T and B cells, and is thought to function in activated and effector T lymphocytes to induce the expression of genes regulated by NFAT transcription factors. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 104

>gnl|CDD|198246 cd10383, SH2_SOCS2, Src homology 2 (SH2) domain found in suppressor of cytokine signaling (SOCS) proteins

 Score = 49.5 bits (118), Expect = 5e-09
 Identities = 30/92 (32%), Positives = 55/92 (59%), Gaps = 10/92 (10%)

Query: 5  KPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQ-R 63
          + L Q  WY GS+T +EA+  L+++ EG++LVR+S  +    ++S+K++ G  +++I+ +
Sbjct: 2  RELSQTGWYWGSMTVNEAKEKLQDAPEGTFLVRDSSHSDYLLTISVKTSAGPTNLRIEYQ 61

Query: 64 DPDTGKFILGQFS------APFDSVPEMIQHF 89
          D   GKF L            FDSV  +I+++
Sbjct: 62 D---GKFRLDSIICVKSKLKQFDSVVHLIEYY 90

SH2 domain found in SOCS proteins. SOCS was first recognized as a group of cytokine-inducible SH2 (CIS) domain proteins comprising eight family members in human (CIS and SOCS1-SOCS7). In addition to the SH2 domain, SOCS proteins have a variable N-terminal domain and a conserved SOCS box in the C-terminal domain. SOCS proteins bind to a substrate via their SH2 domain. The prototypical members, CIS and SOCS1-SOCS3, have been shown to regulate growth hormone signaling in vitro and in a classic negative feedback response compete for binding at phosphotyrosine sites in JAK kinase and receptor pathways to displace effector proteins and target bound receptors for proteasomal degradation. Loss of SOCS activity results in excessive cytokine signaling associated with a variety of hematopoietic, autoimmune, and inflammatory diseases and certain cancers. Members (SOCS4-SOCS7) were identified by their conserved SOCS box, an adapter motif of 3 helices that associates substrate binding domains, such as the SOCS SH2 domain, ankryin, and WD40 with ubiquitin ligase components. These show limited cytokine induction. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 103

>gnl|CDD|198268 cd10405, SH2_Vav1, Src homology 2 (SH2) domain found in the Vav1 proteins

 Score = 49.2 bits (117), Expect = 5e-09
 Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 3/83 (3%)

Query: 12 WYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFI 71
          WY G + R  AE+IL N ++G+YLVR    +  ++++S+K      H+KI      G + 
Sbjct: 7  WYAGPMERAGAESILANRSDGTYLVRQRVKDAAEFAISIKYNVEVKHIKIM--TAEGLYR 64

Query: 72 LGQFSAPFDSVPEMIQHFAENRL 94
          + +  A F  + E+++ + +N L
Sbjct: 65 ITEKKA-FRGLTELVEFYQQNSL 86

Proto-oncogene vav is a member of the Dbl family of guanine nucleotide exchange factors (GEF) for the Rho family of GTP binding proteins. All vavs are activated by tyrosine phosphorylation leading to their activation. There are three Vav mammalian family members: Vav1 which is expressed in the hematopoietic system, and Vav2 and Vav3 are more ubiquitously expressed. Vav1 plays a role in T-cell and B-cell development and activation. It has been identified as the specific binding partner of Nef proteins from HIV-1, resulting in morphological changes, cytoskeletal rearrangements, and the JNK/SAPK signaling cascade, leading to increased levels of viral transcription and replication. Vav1 has been shown to interact with Ku70, PLCG1, Lymphocyte cytosolic protein 2, Janus kinase 2, SIAH2, S100B, Abl gene, ARHGDIB, SHB, PIK3R1, PRKCQ, Grb2, MAPK1, Syk, Linker of activated T cells, Cbl gene and EZH2. Vav proteins are involved in several processes that require cytoskeletal reorganization, such as the formation of the immunological synapse (IS), phagocytosis, platelet aggregation, spreading, and transformation. Vavs function as guanine nucleotide exchange factors (GEFs) for the Rho/Rac family of GTPases. Vav family members have several conserved motifs/domains including: a leucine-rich region, a leucine-zipper, a calponin homology (CH) domain, an acidic domain, a Dbl-homology (DH) domain, a pleckstrin homology (PH) domain, a cysteine-rich domain, 2 SH3 domains, a proline-rich region, and a SH2 domain. Vavs are the only known Rho GEFs that have both the DH/PH motifs and SH2/SH3 domains in the same protein. The leucine-rich helix-loop-helix (HLH) domain is thought to be involved in protein heterodimerization with other HLH proteins and it may function as a negative regulator by forming inactive heterodimers. The CH domain is usually involved in the association with filamentous actin, but in Vav it controls NFAT stimulation, Ca2+ mobilization, and its transforming activity. Acidic domains are involved in protein-protein interactions and contain regulatory tyrosines. The DH domain is a GDP-GTP exchange factor on Rho/Rac GTPases. The PH domain in involved in interactions with GTP-binding proteins, lipids and/or phosphorylated serine/threonine residues. The SH3 domain is involved in localization of proteins to specific sites within the cell interacting with protein with proline-rich sequences. The SH2 domain mediates a high affinity interaction with tyrosine phosphorylated proteins. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 103

>gnl|CDD|198210 cd10347, SH2_Nterm_shark_like, N-terminal Src homology 2 (SH2) domain found in SH2 domains, ANK, and kinase domain (shark) proteins

 Score = 48.5 bits (116), Expect = 5e-09
 Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 3/81 (3%)

Query: 11 NWYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTG 68
           WYHG ++R  AE +L      +G +LVR S S   DY LSL +    +H +I+R  +  
Sbjct: 2  RWYHGKISREVAEALLLREGGRDGLFLVRESTSAPGDYVLSLLAQGEVLHYQIRRHGE-D 60

Query: 69 KFILGQFSAPFDSVPEMIQHF 89
           F        F  +  +I+H+
Sbjct: 61 AFFSDDGPLIFHGLDTLIEHY 81

These non-receptor protein-tyrosine kinases contain two SH2 domains, five ankyrin (ANK)-like repeats, and a potential tyrosine phosphorylation site in the carboxyl-terminal tail which resembles the phosphorylation site in members of the src family. Like, mammalian non-receptor protein-tyrosine kinases, ZAP-70 and syk proteins, they do not have SH3 domains. However, the presence of ANK makes these unique among protein-tyrosine kinases. Both tyrosine kinases and ANK repeats have been shown to transduce developmental signals, and SH2 domains are known to participate intimately in tyrosine kinase signaling. These tyrosine kinases are believed to be involved in epithelial cell polarity. The members of this family include the shark (SH2 domains, ANK, and kinase domain) gene in Drosophila and yellow fever mosquitos, as well as the hydra protein HTK16. Drosophila Shark is proposed to transduce intracellularly the Crumbs, a protein necessary for proper organization of ectodermal epithelia, intercellular signal. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 81

>gnl|CDD|198251 cd10388, SH2_SOCS7, Src homology 2 (SH2) domain found in suppressor of cytokine signaling (SOCS) proteins

 Score = 48.1 bits (115), Expect = 1e-08
 Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 5  KPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRD 64
          + L    WY G ++  +AE +L N  +GS+LVR+S  +R  +SLS +S     H +I  +
Sbjct: 5  RELKDCGWYWGPMSWEDAEKVLSNKPDGSFLVRDSSDDRYIFSLSFRSQGSVHHTRI--E 62

Query: 65 PDTGKFILG 73
             G F LG
Sbjct: 63 QYQGTFSLG 71

SH2 domain found in SOCS proteins. SOCS was first recognized as a group of cytokine-inducible SH2 (CIS) domain proteins comprising eight family members in human (CIS and SOCS1-SOCS7). In addition to the SH2 domain, SOCS proteins have a variable N-terminal domain and a conserved SOCS box in the C-terminal domain. SOCS proteins bind to a substrate via their SH2 domain. The prototypical members, CIS and SOCS1-SOCS3, have been shown to regulate growth hormone signaling in vitro and in a classic negative feedback response compete for binding at phosphotyrosine sites in JAK kinase and receptor pathways to displace effector proteins and target bound receptors for proteasomal degradation. Loss of SOCS activity results in excessive cytokine signaling associated with a variety of hematopoietic, autoimmune, and inflammatory diseases and certain cancers. Members (SOCS4-SOCS7) were identified by their conserved SOCS box, an adapter motif of 3 helices that associates substrate binding domains, such as the SOCS SH2 domain, ankryin, and WD40 with ubiquitin ligase components. These show limited cytokine induction. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|198261 cd10398, SH2_Tec_Txk, Src homology 2 (SH2) domain found in Tec protein, Txk

 Score = 47.6 bits (113), Expect = 2e-08
 Identities = 31/93 (33%), Positives = 58/93 (62%), Gaps = 10/93 (10%)

Query: 7  LDQRNWYHGSVTRHEAENILRN-SNEGSYLVRNSESNRPDYSLSLKS-ARGFM-----HM 59
          L+   WYH ++TR++AE +LR  S EG+++VR+S  +   Y++S+ + AR        H 
Sbjct: 3  LEIYEWYHKNITRNQAERLLRQESKEGAFIVRDS-RHLGSYTISVFTRARRSTEASIKHY 61

Query: 60 KIQRDPDTGKFILGQFSAPFDSVPEMIQHFAEN 92
          +I+++ D+G++ + +    F S+PE+IQ+   N
Sbjct: 62 QIKKN-DSGQWYVAERHL-FQSIPELIQYHQHN 92

A member of the Tec protein tyrosine kinase Txk is expressed in thymus, spleen, lymph node, T lymphocytes, NK cells, mast cell lines, and myeloid cell line. Txk plays a role in TCR signal transduction, T cell development, and selection which is analogous to the function of Itk. Txk has been shown to interact with IFN-gamma. Unlike most of the Tec family members Txk lacks a PH domain. Instead Txk has a unique region containing a palmitoylated cysteine string which has a similar membrane tethering function as the PH domain. Txk also has a zinc-binding motif, a SH3 domain, a SH2 domain, and a protein kinase catalytic domain. The TH domain consists of a Zn2+-binding Btk motif and a proline-rich region. The Btk motif is found in Tec kinases, Ras GAP, and IGBP and crucial to the function of the PH domain. It is not present in Txk which is not surprising since it lacks a PH domain. The type 1 splice form of the Drosophila homolog also lacks both the PH domain and the Btk motif. The proline-rich regions are highly conserved for the most part with the exception of Bmx whose residues surrounding the PXXP motif are not conserved (TH-like) and Btk29A which is entirely unique with large numbers of glycine residues (TH-extended). Tec family members all lack a C-terminal tyrosine having an autoinhibitory function in its phosphorylated state. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 106

>gnl|CDD|198282 cd10419, SH2_Src_Fyn_isoform_b_like, Src homology 2 (SH2) domain found in Fyn isoform b like proteins

 Score = 47.4 bits (112), Expect = 3e-08
 Identities = 27/89 (30%), Positives = 52/89 (58%), Gaps = 9/89 (10%)

Query: 10 RNWYHGSVTRHEAENILRN--SNEGSYLVRNSESNRPDYSLSLK---SARG--FMHMKIQ 62
            WY G + R +AE  L +  +  G++L+R SE+ +  YSLS++     +G    H KI+
Sbjct: 3  EEWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIR 62

Query: 63 RDPDTGKFILGQFSAPFDSVPEMIQHFAE 91
          +  + G +I  +  A F+++ +++QH++E
Sbjct: 63 KLDNGGYYITTR--AQFETLQQLVQHYSE 89

Fyn is a member of the Src non-receptor type tyrosine kinase family of proteins. This cd contains the SH2 domain found in Fyn isoform b type proteins. Fyn is involved in the control of cell growth and is required in the following pathways: T and B cell receptor signaling, integrin-mediated signaling, growth factor and cytokine receptor signaling, platelet activation, ion channel function, cell adhesion, axon guidance, fertilization, entry into mitosis, and differentiation of natural killer cells, oligodendrocytes and keratinocytes. The protein associates with the p85 subunit of phosphatidylinositol 3-kinase and interacts with the Fyn-binding protein. Alternatively spliced transcript variants encoding distinct isoforms exist. Fyn is primarily localized to the cytoplasmic leaflet of the plasma membrane. Tyrosine phosphorylation of target proteins by Fyn serves to either regulate target protein activity, and/or to generate a binding site on the target protein that recruits other signaling molecules. FYN has been shown to interact with a number of proteins including: BCAR1, Cbl, Janus kinase, nephrin, Sky, tyrosine kinase, Wiskott-Aldrich syndrome protein, and Zap-70. Fyn has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|198247 cd10384, SH2_SOCS3, Src homology 2 (SH2) domain found in suppressor of cytokine signaling (SOCS) proteins

 Score = 47.0 bits (112), Expect = 3e-08
 Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 8/89 (8%)

Query: 7  LDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPD 66
          L +  +Y  +V+  EA  +L     G++L+R+S   R  ++LS+K+  G  +++IQ +  
Sbjct: 7  LQESGFYWSTVSGKEANLLLSAEPAGTFLIRDSSDQRHFFTLSVKTESGTKNLRIQCEG- 65

Query: 67 TGKFIL-----GQFSAP-FDSVPEMIQHF 89
           G F L          P FD V +++ H+
Sbjct: 66 -GSFSLQTDPRSTQPVPRFDCVLKLVHHY 93

SH2 domain found in SOCS proteins. SOCS was first recognized as a group of cytokine-inducible SH2 (CIS) domain proteins comprising eight family members in human (CIS and SOCS1-SOCS7). In addition to the SH2 domain, SOCS proteins have a variable N-terminal domain and a conserved SOCS box in the C-terminal domain. SOCS proteins bind to a substrate via their SH2 domain. The prototypical members, CIS and SOCS1-SOCS3, have been shown to regulate growth hormone signaling in vitro and in a classic negative feedback response compete for binding at phosphotyrosine sites in JAK kinase and receptor pathways to displace effector proteins and target bound receptors for proteasomal degradation. Loss of SOCS activity results in excessive cytokine signaling associated with a variety of hematopoietic, autoimmune, and inflammatory diseases and certain cancers. Members (SOCS4-SOCS7) were identified by their conserved SOCS box, an adapter motif of 3 helices that associates substrate binding domains, such as the SOCS SH2 domain, ankryin, and WD40 with ubiquitin ligase components. These show limited cytokine induction. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|198223 cd10360, SH2_Srm, Src homology 2 (SH2) domain found in Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristoylation sites (srm)

 Score = 46.5 bits (110), Expect = 4e-08
 Identities = 21/80 (26%), Positives = 43/80 (53%), Gaps = 4/80 (5%)

Query: 12 WYHGSVTRHEAENILRN--SNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGK 69
          WY   ++R +A+ +L +  +  G++L+R SES+   YSLS+++     H +I   P    
Sbjct: 2  WYFSGISRTQAQQLLLSPPNEPGAFLIRPSESSLGGYSLSVRAQAKVCHYRICMAPSGSL 61

Query: 70 FILGQFSAPFDSVPEMIQHF 89
          ++  Q    F  + E++ ++
Sbjct: 62 YL--QKGRLFPGLEELLAYY 79

Srm is a nonreceptor protein kinase that has two SH2 domains, a SH3 domain, and a kinase domain with a tyrosine residue for autophosphorylation. However it lacks an N-terminal glycine for myristoylation and a C-terminal tyrosine which suppresses kinase activity when phosphorylated. Srm is most similar to members of the Tec family who other members include: Tec, Btk/Emb, and Itk/Tsk/Emt. However Srm differs in its N-terminal unique domain it being much smaller than in the Tec family and is closer to Src. Srm is thought to be a new family of nonreceptor tyrosine kinases that may be redundant in function. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 79

>gnl|CDD|198228 cd10365, SH2_Src_Src, Src homology 2 (SH2) domain found in tyrosine kinase sarcoma (Src)

 Score = 47.0 bits (111), Expect = 5e-08
 Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 9/88 (10%)

Query: 12 WYHGSVTRHEAENILRN--SNEGSYLVRNSESNRPDYSLSL---KSARGF--MHMKIQRD 64
          WY G +TR E+E +L N  +  G++LVR SE+ +  Y LS+    +A+G    H KI R 
Sbjct: 5  WYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKI-RK 63

Query: 65 PDTGKFILGQFSAPFDSVPEMIQHFAEN 92
           D+G F +      F+S+ +++ +++++
Sbjct: 64 LDSGGFYITS-RTQFNSLQQLVAYYSKH 90

Src is a member of the Src non-receptor type tyrosine kinase family of proteins. Src is thought to play a role in the regulation of embryonic development and cell growth. Members here include v-Src and c-Src. v-Src lacks the C-terminal inhibitory phosphorylation site and is therefore constitutively active as opposed to normal cellular src (c-Src) which is only activated under certain circumstances where it is required (e.g. growth factor signaling). v-Src is an oncogene whereas c-Src is a proto-oncogene. c-Src consists of three domains, an N-terminal SH3 domain, a central SH2 domain and a tyrosine kinase domain. The SH2 and SH3 domains work together in the auto-inhibition of the kinase domain. The phosphorylation of an inhibitory tyrosine near the c-terminus of the protein produces a binding site for the SH2 domain which then facilitates binding of the SH3 domain to a polyproline site within the linker between the SH2 domain and the kinase domain. Binding of the SH3 domain inactivates the enzyme. This allows for multiple mechanisms for c-Src activation: dephosphorylation of the C-terminal tyrosine by a protein tyrosine phosphatase, binding of the SH2 domain by a competitive phospho-tyrosine residue, or competitive binding of a polyproline binding site to the SH3 domain. Unlike most other Src members Src lacks cysteine residues in the SH4 domain that undergo palmitylation. Serine and threonine phosphorylation sites have also been identified in the unique domains of Src and are believed to modulate protein-protein interactions or regulate catalytic activity. Alternatively spliced forms of Src, which contain 6- or 11-amino acid insertions in the SH3 domain, are expressed in CNS neurons. c-Src has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|198213 cd10350, SH2_SH2D4A, Src homology 2 domain found in the SH2 domain containing protein 4A (SH2D4A)

 Score = 46.5 bits (110), Expect = 7e-08
 Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 4/96 (4%)

Query: 12  WYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFI 71
           W+HG +T  +A  +L ++  GS+L+R SE  +  Y+LS  S  G  H  I    D+  F 
Sbjct: 9   WFHGILTLKKANELLLSTMPGSFLIRVSEKIK-GYALSYLSEEGCKHFLIDASADSYSF- 66

Query: 72  LGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHP 107
           LG       ++ +++++  E  +  LG E   LL+P
Sbjct: 67  LGVDQLQHATLADLVEYHKEEPITSLGKE--LLLYP 100

SH2D4A contains a single SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 103

>gnl|CDD|198259 cd10396, SH2_Tec_Itk, Src homology 2 (SH2) domain found in Tec protein, IL2-inducible T-cell kinase (Itk)

 Score = 46.7 bits (111), Expect = 7e-08
 Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 8/93 (8%)

Query: 7  LDQRNWYHGSVTRHEAENILRNSN-EGSYLVRNSESNRPDYSLSL------KSARGFMHM 59
          LDQ  WY+ ++ R +AE +LR+   EG ++VR+S S    Y++SL      +      H 
Sbjct: 3  LDQYEWYNKNINRSKAEKLLRDEGKEGGFMVRDS-SQPGLYTVSLYTKAGGEGNPCIRHY 61

Query: 60 KIQRDPDTGKFILGQFSAPFDSVPEMIQHFAEN 92
           I+   D+ K         F+S+PE+I++   N
Sbjct: 62 HIKETNDSPKKYYLAEKHVFNSIPELIEYHKHN 94

A member of the Tec protein tyrosine kinase Itk is expressed thymus, spleen, lymph node, T lymphocytes, NK and mast cells. It plays a role in T-cell proliferation and differentiation, analogous to Tec family kinases Txk. Itk has been shown to interact with Fyn, Wiskott-Aldrich syndrome protein, KHDRBS1, PLCG1, Lymphocyte cytosolic protein 2, Linker of activated T cells, Karyopherin alpha 2, Grb2, and Peptidylprolyl isomerase A. Most of the Tec family members have a PH domain (Txk and the short (type 1) splice variant of Drosophila Btk29A are exceptions), a Tec homology (TH) domain, a SH3 domain, a SH2 domain, and a protein kinase catalytic domain. The TH domain consists of a Zn2+-binding Btk motif and a proline-rich region. The Btk motif is found in Tec kinases, Ras GAP, and IGBP. It is crucial for the function of Tec PH domains and it's lack of presence in Txk is not surprising since it lacks a PH domain. The type 1 splice form of the Drosophila homolog also lacks both the PH domain and the Btk motif. The proline-rich regions are highly conserved for the most part with the exception of Bmx whose residues surrounding the PXXP motif are not conserved (TH-like) and Btk29A which is entirely unique with large numbers of glycine residues (TH-extended). Tec family members all lack a C-terminal tyrosine having an autoinhibitory function in its phosphorylated state. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 108

>gnl|CDD|198231 cd10368, SH2_Src_Fyn, Src homology 2 (SH2) domain found in Fyn

 Score = 46.2 bits (109), Expect = 7e-08
 Identities = 27/89 (30%), Positives = 52/89 (58%), Gaps = 9/89 (10%)

Query: 10 RNWYHGSVTRHEAENILRN--SNEGSYLVRNSESNRPDYSLSLK---SARG--FMHMKIQ 62
            WY G + R +AE  L +  +  G++L+R SE+ +  YSLS++     +G    H KI+
Sbjct: 3  EEWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIR 62

Query: 63 RDPDTGKFILGQFSAPFDSVPEMIQHFAE 91
          +  + G +I  +  A F+++ +++QH++E
Sbjct: 63 KLDNGGYYITTR--AQFETLQQLVQHYSE 89

Fyn is a member of the Src non-receptor type tyrosine kinase family of proteins. Fyn is involved in the control of cell growth and is required in the following pathways: T and B cell receptor signaling, integrin-mediated signaling, growth factor and cytokine receptor signaling, platelet activation, ion channel function, cell adhesion, axon guidance, fertilization, entry into mitosis, and differentiation of natural killer cells, oligodendrocytes and keratinocytes. The protein associates with the p85 subunit of phosphatidylinositol 3-kinase and interacts with the Fyn-binding protein. Alternatively spliced transcript variants encoding distinct isoforms exist. Fyn is primarily localized to the cytoplasmic leaflet of the plasma membrane. Tyrosine phosphorylation of target proteins by Fyn serves to either regulate target protein activity, and/or to generate a binding site on the target protein that recruits other signaling molecules. FYN has been shown to interact with a number of proteins including: BCAR1, Cbl, Janus kinase, nephrin, Sky, tyrosine kinase, Wiskott-Aldrich syndrome protein, and Zap-70. Fyn has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|199830 cd10349, SH2_SH2D2A_SH2D7, Src homology 2 domain found in the SH2 domain containing protein 2A and 7 (SH2D2A and SH2D7)

 Score = 45.6 bits (108), Expect = 7e-08
 Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 2/78 (2%)

Query: 12 WYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFI 71
          W+HG +TR EAE +L    +G YLVR SES    + LS +S     H  + +  D    +
Sbjct: 2  WFHGFITRREAERLLEPKPQGCYLVRFSES-AVTFVLSYRSRTCCRHFLLAQLRDGRHVV 60

Query: 72 LGQFSAPFDSVPEMIQHF 89
          LG+ SA    + +++ H+
Sbjct: 61 LGEDSA-HARLQDLLLHY 77

SH2D2A and SH7 both contain a single SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 77

>gnl|CDD|198264 cd10401, SH2_C-SH2_Syk_like, C-terminal Src homology 2 (SH2) domain found in Spleen tyrosine kinase (Syk) proteins

 Score = 46.0 bits (109), Expect = 9e-08
 Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 5/81 (6%)

Query: 12 WYHGSVTRHEAENILRNS--NEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGK 69
          W+HG ++R E+E IL       G +L+R  ++N   Y+L L      +H +I +D  TGK
Sbjct: 5  WFHGKISREESEQILLIGSKTNGKFLIRERDNNGS-YALCLLHDGKVLHYRIDKD-KTGK 62

Query: 70 FILGQFSAPFDSVPEMIQHFA 90
            +      FD++ ++++H++
Sbjct: 63 LSIPD-GKKFDTLWQLVEHYS 82

ZAP-70 and Syk comprise a family of hematopoietic cell specific protein tyrosine kinases (PTKs) that are required for antigen and antibody receptor function. ZAP-70 is expressed in T and natural killer (NK) cells and Syk is expressed in B cells, mast cells, polymorphonuclear leukocytes, platelets, macrophages, and immature T cells. They are required for the proper development of T and B cells, immune receptors, and activating NK cells. They consist of two N-terminal Src homology 2 (SH2) domains and a C-terminal kinase domain separated from the SH2 domains by a linker or hinge region. Phosphorylation of both tyrosine residues within the Immunoreceptor Tyrosine-based Activation Motifs (ITAM; consensus sequence Yxx[LI]x(7,8)Yxx[LI]) by the Src-family PTKs is required for efficient interaction of ZAP-70 and Syk with the receptor subunits and for receptor function. ZAP-70 forms two phosphotyrosine binding pockets, one of which is shared by both SH2 domains. In Syk the two SH2 domains do not form such a phosphotyrosine-binding site. The SH2 domains here are believed to function independently. In addition, the two SH2 domains of Syk display flexibility in their relative orientation, allowing Syk to accommodate a greater variety of spacing sequences between the ITAM phosphotyrosines and singly phosphorylated non-classical ITAM ligands. This model contains the C-terminus SH2 domains of Syk. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 99

>gnl|CDD|198197 cd09944, SH2_Grb7_family, Src homology 2 (SH2) domain found in the growth factor receptor bound, subclass 7 (Grb7) proteins

 Score = 45.5 bits (108), Expect = 2e-07
 Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 8/102 (7%)

Query: 12  WYHGSVTRHEAENILRN--SNEGSYLVRNSESNRPDYSLSLKSARGFMHMKI--QRDPDT 67
           W+HG ++R EA  ++R     +G +LVR S+SN   + LSLK  +   H +I    D   
Sbjct: 7   WFHGGISRDEAARLIRQQGLVDGVFLVRESQSNPGAFVLSLKHGQKIKHYQIIPIEDEGQ 66

Query: 68  GKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMI 109
             F L      F  + ++++ +  N     G+    L H   
Sbjct: 67  WYFTLDDGVTKFYDLLQLVEFYQLNA----GSLPTRLKHYCT 104

The Grb family binds to the epidermal growth factor receptor (EGFR, erbB1) via their SH2 domains. There are 3 members of the Grb7 family of proteins: Grb7, Grb10, and Grb14. They are composed of an N-terminal Proline-rich domain, a Ras Associating-like (RA) domain, a Pleckstrin Homology (PH) domain, a phosphotyrosine interaction region (PIR, BPS) and a C-terminal SH2 domain. The SH2 domains of Grb7, Grb10 and Grb14 preferentially bind to a different RTK. Grb7 binds strongly to the erbB2 receptor, unlike Grb10 and Grb14 which bind weakly to it. Grb14 binds to Fibroblast Growth Factor Receptor (FGFR). Grb10 has been shown to interact with many different proteins, including the insulin and IGF1 receptors, platelet-derived growth factor (PDGF) receptor-beta, Ret, Kit, Raf1 and MEK1, and Nedd4. Grb7 family proteins are phosphorylated on serine/threonine as well as tyrosine residues. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 108

>gnl|CDD|198184 cd09930, SH2_cSH2_p85_like, C-terminal Src homology 2 (cSH2) domain found in p85

 Score = 45.5 bits (108), Expect = 2e-07
 Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 13/98 (13%)

Query: 7   LDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPD 66
            D+R W  G + R +AE +LR   +G++L+R S S +  Y+ S+       H  I +  +
Sbjct: 3   HDERTWLVGDINRTQAEELLRGKPDGTFLIRES-STQGCYACSVVCNGEVKHCVIYKT-E 60

Query: 67  TGKFILGQFSAPFD---SVPEMIQHFAENRLPILGAEH 101
           TG    G F+ P++   S+ E++ H+A N L     +H
Sbjct: 61  TG---YG-FAEPYNLYESLKELVLHYAHNSL----EQH 90

Phosphoinositide 3-kinases (PI3Ks) are essential for cell growth, migration, and survival. p110, the catalytic subunit, is composed of an adaptor-binding domain, a Ras-binding domain, a C2 domain, a helical domain, and a kinase domain. The regulatory unit is called p85 and is composed of an SH3 domain, a RhoGap domain, a N-terminal SH2 (nSH2) domain, a inter SH2 (iSH2) domain, and C-terminal (cSH2) domain. There are 2 inhibitory interactions between p110alpha and p85 of P13K: 1) p85 nSH2 domain with the C2, helical, and kinase domains of p110alpha and 2) p85 iSH2 domain with C2 domain of p110alpha. There are 3 inhibitory interactions between p110beta and p85 of P13K: 1) p85 nSH2 domain with the C2, helical, and kinase domains of p110beta, 2) p85 iSH2 domain with C2 domain of p110alpha, and 3) p85 cSH2 domain with the kinase domain of p110alpha. It is interesting to note that p110beta is oncogenic as a wild type protein while p110alpha lacks this ability. One explanation is the idea that the regulation of p110beta by p85 is unique because of the addition of inhibitory contacts from the cSH2 domain and the loss of contacts in the iSH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 104

>gnl|CDD|198207 cd10344, SH2_SLAP, Src homology 2 domain found in Src-like adaptor proteins

 Score = 45.2 bits (107), Expect = 2e-07
 Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 9/88 (10%)

Query: 12 WYHGSVTRHEAENILR--NSNEGSYLVRNSESNRPDYSLSLKSARGFM-----HMKIQRD 64
          W    ++R +AE +L    +  GS+L+R SE+ R  YSLS++           H +I R 
Sbjct: 12 WLFEGLSREKAEELLMLPGNQVGSFLIRESETRRGCYSLSVRHRGSQSRDSVKHYRIFRL 71

Query: 65 PDTGKFILGQFSAPFDSVPEMIQHFAEN 92
           +   +I  + +  F  + +M+ H++E+
Sbjct: 72 DNGWFYISPRLT--FQCLEDMVNHYSES 97

SLAP belongs to the subfamily of adapter proteins that negatively regulate cellular signaling initiated by tyrosine kinases. It has a myristylated N-terminus, SH3 and SH2 domains with high homology to Src family tyrosine kinases, and a unique C-terminal tail, which is important for c-Cbl binding. SLAP negatively regulates platelet-derived growth factor (PDGF)-induced mitogenesis in fibroblasts and regulates F-actin assembly for dorsal ruffles formation. c-Cbl mediated SLAP inhibition towards actin remodeling. Moreover, SLAP enhanced PDGF-induced c-Cbl phosphorylation by SFK. In contrast, SLAP mitogenic inhibition was not mediated by c-Cbl, but it rather involved a competitive mechanism with SFK for PDGF-receptor (PDGFR) association and mitogenic signaling. Accordingly, phosphorylation of the Src mitogenic substrates Stat3 and Shc were reduced by SLAP. Thus, we concluded that SLAP regulates PDGFR signaling by two independent mechanisms: a competitive mechanism for PDGF-induced Src mitogenic signaling and a non-competitive mechanism for dorsal ruffles formation mediated by c-Cbl. SLAP is a hematopoietic adaptor containing Src homology (SH)3 and SH2 motifs and a unique carboxy terminus. Unlike c-Src, SLAP lacks a tyrosine kinase domain. Unlike c-Src, SLAP does not impact resorptive function of mature osteoclasts but induces their early apoptosis. SLAP negatively regulates differentiation of osteoclasts and proliferation of their precursors. Conversely, SLAP decreases osteoclast death by inhibiting activation of caspase 3. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 104

>gnl|CDD|198219 cd10356, SH2_ShkA_ShkC, Src homology 2 (SH2) domain found in SH2 domain-bearing protein kinases A and C (ShkA and ShkC)

 Score = 45.3 bits (107), Expect = 2e-07
 Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 5/76 (6%)

Query: 12 WYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFM-HMKIQRDPDTGKF 70
          W+HG ++  E+EN L    EG++LVR S S    Y++S  S  G + H +I R    GKF
Sbjct: 12 WFHGDISTSESENRLNGKPEGTFLVRFSTSEPGAYTISKVSKNGGISHQRIHR--PGGKF 69

Query: 71 ILGQFSAPFDSVPEMI 86
           +   ++ + SV E+I
Sbjct: 70 QVN--NSKYLSVKELI 83

SH2-bearing genes cloned from Dictyostelium include two transcription factors, STATa and STATc, and a signaling factor, SHK1 (shkA). A database search of the Dictyostelium discoideum genome revealed two additional putative STAT sequences, dd-STATb and dd-STATd, and four additional putative SHK genes, dd-SHK2 (shkB), dd-SHK3 (shkC), dd-SHK4 (shkD), and dd-SHK5 (shkE). This model contains members of shkA and shkC. All of the SHK members are most closely related to the protein kinases found in plants. However these kinases in plants are not conjugated to any SH2 or SH2-like sequences. Alignment data indicates that the SHK SH2 domains carry some features of the STAT SH2 domains in Dictyostelium. When STATc's linker domain was used for a BLAST search, the sequence between the protein kinase domain and the SH2 domain (the linker) of SHK was recovered, suggesting a close relationship among these molecules within this region. SHK's linker domain is predicted to contain an alpha-helix which is indeed homologous to that of STAT. Based on the phylogenetic alignment, SH2 domains can be grouped into two categories, STAT-type and Src-type. SHK family members are in between, but are closer to the STAT-type which indicates a close relationship between SHK and STAT families in their SH2 domains and further supports the notion that SHKs linker-SH2 domain evolved from STAT or STATL (STAT-like Linker-SH2) domain found in plants. In SHK, STAT, and SPT6, the linker-SH2 domains all reside exclusively in the C-terminal regions. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 113

>gnl|CDD|198199 cd09946, SH2_HSH2_like, Src homology 2 domain found in hematopoietic SH2 (HSH2) protein

 Score = 44.5 bits (105), Expect = 3e-07
 Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 1/63 (1%)

Query: 12 WYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFI 71
          W+HG+++R  AEN+L +   GS+L+R S S    Y+LS K+     H  ++   D    I
Sbjct: 9  WFHGAISREAAENMLESQPLGSFLIRVSHS-HVGYTLSYKAQSSCRHFMVKLLDDGTFMI 67

Query: 72 LGQ 74
           G+
Sbjct: 68 PGE 70

HSH2 is thought to function as an adapter protein involved in tyrosine kinase signaling. It may also be involved in regulating cytokine signaling and cytoskeletal reorganization in hematopoietic cells. HSH2 contains several putative protein-binding motifs, SH3-binding proline-rich regions, and phosphotyrosine sites, but lacks enzymatic motifs. HSH2 was found to interact with cytokine-regulated tyrosine kinase c-FES and an activated Cdc42-associated tyrosine kinase ACK1. HSH2 binds c-FES through both its C-terminal region and its N-terminal region including the SH2 domain and binds ACK1 via its N-terminal proline-rich region. Both kinases bound and tyrosine-phosphorylated HSH2 in mammalian cells. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 102

>gnl|CDD|198190 cd09937, SH2_csk_like, Src homology 2 (SH2) domain found in Carboxyl-Terminal Src Kinase (Csk)

 Score = 44.2 bits (105), Expect = 4e-07
 Identities = 24/85 (28%), Positives = 49/85 (57%), Gaps = 7/85 (8%)

Query: 11 NWYHGSVTRHEAENILRNSNEGSYLVRNSESNRP-DYSLSLKSARGFMHMKI-QRDPDTG 68
           W+HG ++R EAE +L+   +G +LVR S +N P DY+L +       H ++  R+   G
Sbjct: 4  PWFHGKISREEAERLLQPPEDGLFLVRES-TNYPGDYTLCVSFEGKVEHYRVIYRN---G 59

Query: 69 KFILGQFSAPFDSVPEMIQHFAENR 93
          K  + +    F+++ ++++H+ ++ 
Sbjct: 60 KLTIDE-EEYFENLIQLVEHYTKDA 83

Both the C-terminal Src kinase (CSK) and CSK-homologous kinase (CHK) are members of the CSK-family of protein tyrosine kinases. These proteins suppress activity of Src-family kinases (SFK) by selectively phosphorylating the conserved C-terminal tail regulatory tyrosine by a similar mechanism. CHK is also capable of inhibiting SFKs by a non-catalytic mechanism that involves binding of CHK to SFKs to form stable protein complexes. The unphosphorylated form of SFKs is inhibited by CSK and CHK by a two-step mechanism. The first step involves the formation of a complex of SFKs with CSK/CHK with the SFKs in the complex are inactive. The second step, involves the phosphorylation of the C-terminal tail tyrosine of SFKs, which then dissociates and adopt an inactive conformation. The structural basis of how the phosphorylated SFKs dissociate from CSK/CHK to adopt the inactive conformation is not known. The inactive conformation of SFKs is stabilized by two intramolecular inhibitory interactions: (a) the pYT:SH2 interaction in which the phosphorylated C-terminal tail tyrosine (YT) binds to the SH2 domain, and (b) the linker:SH3 interaction of which the SH2-kinase domain linker binds to the SH3 domain. SFKs are activated by multiple mechanisms including binding of the ligands to the SH2 and SH3 domains to displace the two inhibitory intramolecular interactions, autophosphorylation, and dephosphorylation of YT. By selective phosphorylation and the non-catalytic inhibitory mechanism CSK and CHK are able to inhibit the active forms of SFKs. CSK and CHK are regulated by phosphorylation and inter-domain interactions. They both contain SH3, SH2, and kinase domains separated by the SH3-SH2 connector and SH2 kinase linker, intervening segments separating the three domains. They lack a conserved tyrosine phosphorylation site in the kinase domain and the C-terminal tail regulatory tyrosine phosphorylation site. The CSK SH2 domain is crucial for stabilizing the kinase domain in the active conformation. A disulfide bond here regulates CSK kinase activity. The subcellular localization and activity of CSK are regulated by its SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 98

>gnl|CDD|198265 cd10402, SH2_C-SH2_Zap70, C-terminal Src homology 2 (SH2) domain found in Zeta-chain-associated protein kinase 70 (ZAP-70)

 Score = 43.4 bits (102), Expect = 9e-07
 Identities = 24/80 (30%), Positives = 46/80 (57%), Gaps = 5/80 (6%)

Query: 12 WYHGSVTRHEAENILRNSNE--GSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGK 69
          WYHGS+ R EAE  L +  +  G +L+R  + +   Y+LSL   +   H +I +D  +GK
Sbjct: 12 WYHGSIARDEAERRLYSGAQPDGKFLLRERKES-GTYALSLVYGKTVYHYRIDQD-KSGK 69

Query: 70 FILGQFSAPFDSVPEMIQHF 89
          + + +    FD++ +++++ 
Sbjct: 70 YSIPE-GTKFDTLWQLVEYL 88

ZAP-70 and Syk comprise a family of hematopoietic cell specific protein tyrosine kinases (PTKs) that are required for antigen and antibody receptor function. ZAP-70 is expressed in T and natural killer (NK) cells and Syk is expressed in B cells, mast cells, polymorphonuclear leukocytes, platelets, macrophages, and immature T cells. They are required for the proper development of T and B cells, immune receptors, and activating NK cells. They consist of two N-terminal Src homology 2 (SH2) domains and a C-terminal kinase domain separated from the SH2 domains by a linker or hinge region. Phosphorylation of both tyrosine residues within the Immunoreceptor Tyrosine-based Activation Motifs (ITAM; consensus sequence Yxx[LI]x(7,8)Yxx[LI]) by the Src-family PTKs is required for efficient interaction of ZAP-70 and Syk with the receptor subunits and for receptor function. ZAP-70 forms two phosphotyrosine binding pockets, one of which is shared by both SH2 domains. In Syk the two SH2 domains do not form such a phosphotyrosine-binding site. The SH2 domains here are believed to function independently. In addition, the two SH2 domains of Syk display flexibility in their relative orientation, allowing Syk to accommodate a greater variety of spacing sequences between the ITAM phosphotyrosines and singly phosphorylated non-classical ITAM ligands. This model contains the C-terminus SH2 domains of Zap70. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 105

>gnl|CDD|198206 cd10343, SH2_SHIP, Src homology 2 (SH2) domain found in SH2-containing inositol-5'-phosphatase (SHIP) and SLAM-associated protein (SAP)

 Score = 43.6 bits (103), Expect = 9e-07
 Identities = 19/40 (47%), Positives = 29/40 (72%), Gaps = 1/40 (2%)

Query: 12 WYHGSVTRHEAENIL-RNSNEGSYLVRNSESNRPDYSLSL 50
          WYHG++TR +AE +L +   +GS+LVR+SES    Y+L +
Sbjct: 5  WYHGNITRSKAEELLSKAGKDGSFLVRDSESVSGAYALCV 44

The SH2-containing inositol-5'-phosphatase, SHIP (also called SHIP1/SHIP1a), is a hematopoietic-restricted phosphatidylinositide phosphatase that translocates to the plasma membrane after extracellular stimulation and hydrolyzes the phosphatidylinositol-3-kinase (PI3K)-generated second messenger PI-3,4,5-P3 (PIP3) to PI-3,4-P2. As a result, SHIP dampens down PIP3 mediated signaling and represses the proliferation, differentiation, survival, activation, and migration of hematopoietic cells. PIP3 recruits lipid-binding pleckstrin homology(PH) domain-containing proteins to the inner wall of the plasma membrane and activates them. PH domain-containing downstream effectors include the survival/proliferation enhancing serine/threonine kinase, Akt (protein kinase B), the tyrosine kinase, Btk, the regulator of protein translation, S6K, and the Rac and cdc42 guanine nucleotide exchange factor, Vav. SHIP is believed to act as a tumor suppressor during leukemogenesis and lymphomagenesis, and may play a role in activating the immune system to combat cancer. SHIP contains an N-terminal SH2 domain, a centrally located phosphatase domain that specifically hydrolyzes the 5'-phosphate from PIP3, PI-4,5-P2 and inositol-1,3,4,5- tetrakisphosphate (IP4), a C2 domain, that is an allosteric activating site when bound by SHIP's enzymatic product, PI-3,4-P2; 2 NPXY motifs that bind proteins with a phosphotyrosine binding (Shc, Dok 1, Dok 2) or an SH2 (p85a, SHIP2) domain; and a proline-rich domain consisting of four PxxP motifs that bind a subset of SH3-containing proteins including Grb2, Src, Lyn, Hck, Abl, PLCg1, and PIAS1. The SH2 domain of SHIP binds to the tyrosine phosphorylated forms of Shc, SHP-2, Doks, Gabs, CD150, platelet-endothelial cell adhesion molecule, Cas, c-Cbl, immunoreceptor tyrosine-based inhibitory motifs (ITIMs), and immunoreceptor tyrosine-based activation motifs (ITAMs). The X-linked lymphoproliferative syndrome (XLP) gene encodes SAP (also called SH2D1A/DSHP) a protein that consists of a 5 residue N-terminus, a single SH2 domain, and a short 25 residue C-terminal tail. XLP is characterized by an extreme sensitivity to Epstein-Barr virus. Both T and natural killer (NK) cell dysfunctions have been seen in XLP patients. SAP binds the cytoplasmic tail of Signaling lymphocytic activation molecule (SLAM), 2B4, Ly-9, and CD84. SAP is believed to function as a signaling inhibitor, by blocking or regulating binding of other signaling proteins. SAP and the SAP-like protein EAT-2 recognize the sequence motif TIpYXX(V/I), which is found in the cytoplasmic domains of a restricted number of T, B, and NK cell surface receptors and are proposed to be natural inhibitors or regulators of the physiological role of a small family of receptors on the surface of these cells. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 103

>gnl|CDD|198180 cd09926, SH2_CRK_like, Src homology 2 domain found in cancer-related signaling adaptor protein CRK

 Score = 43.6 bits (103), Expect = 9e-07
 Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 6/80 (7%)

Query: 8  DQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKI----QR 63
          D+ +WY G ++R EA+ +L+    G +LVR+S +   DY LS+       H  I    Q 
Sbjct: 5  DRSSWYFGPMSRQEAQELLQGQRHGVFLVRDSSTIPGDYVLSVSENSRVSHYIINSLGQP 64

Query: 64 DPDTGKFILGQFSAPFDSVP 83
           P+  ++ +G     FD +P
Sbjct: 65 APNQSRYRIGDQE--FDDLP 82

SH2 domain in the CRK proteins. CRKI (SH2-SH3) and CRKII (SH2-SH3-SH3) are splicing isoforms of the oncoprotein CRK. CRKs regulate transcription and cytoskeletal reorganization for cell growth and motility by linking tyrosine kinases to small G proteins. The SH2 domain of CRK associates with tyrosine-phosphorylated receptors or components of focal adhesions, such as p130Cas and paxillin. CRK transmits signals to small G proteins through effectors that bind its SH3 domain, such as C3G, the guanine-nucleotide exchange factor (GEF) for Rap1 and R-Ras, and DOCK180, the GEF for Rac6. The binding of p130Cas to the CRK-C3G complex activates Rap1, leading to regulation of cell adhesion, and activates R-Ras, leading to JNK-mediated activation of cell proliferation, whereas the binding of CRK DOCK180 induces Rac1-mediated activation of cellular migration. The activity of the different splicing isoforms varies greatly with CRKI displaying substantial transforming activity, CRKII less so, and phosphorylated CRKII with no biological activity whatsoever. CRKII has a linker region with a phosphorylated Tyr and an additional C-terminal SH3 domain. The phosphorylated Tyr creates a binding site for its SH2 domain which disrupts the association between CRK and its SH2 target proteins. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 106

>gnl|CDD|198227 cd10364, SH2_Src_Lyn, Src homology 2 (SH2) domain found in Lyn

 Score = 43.4 bits (102), Expect = 1e-06
 Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 9/85 (10%)

Query: 12 WYHGSVTRHEAENIL--RNSNEGSYLVRNSESNRPDYSLSLK--SARG---FMHMKIQRD 64
          W+   +TR +AE  L    ++ G++L+R SE+ +  YSLS++    +      H KI+  
Sbjct: 5  WFFKDITRKDAERQLLAPGNSAGAFLIRESETLKGSYSLSVRDYDPQHGDVIKHYKIRSL 64

Query: 65 PDTGKFILGQFSAPFDSVPEMIQHF 89
           + G +I  + +  F  + +MI+H+
Sbjct: 65 DNGGYYISPRIT--FPCISDMIKHY 87

Lyn is a member of the Src non-receptor type tyrosine kinase family of proteins and is expressed in the hematopoietic cells, in neural tissues, liver, and adipose tissue. There are two alternatively spliced forms of Lyn. Lyn plays an inhibitory role in myeloid lineage proliferation. Following engagement of the B cell receptors, Lyn undergoes rapid phosphorylation and activation, triggering a cascade of signaling events mediated by Lyn phosphorylation of tyrosine residues within the immunoreceptor tyrosine-based activation motifs (ITAM) of the receptor proteins, and subsequent recruitment and activation of other kinases including Syk, phospholipase C2 (PLC2) and phosphatidyl inositol-3 kinase. These kinases play critical roles in proliferation, Ca2+ mobilization and cell differentiation. Lyn plays an essential role in the transmission of inhibitory signals through phosphorylation of tyrosine residues within the immunoreceptor tyrosine-based inhibitory motifs (ITIM) in regulatory proteins such as CD22, PIR-B and FC RIIb1. Their ITIM phosphorylation subsequently leads to recruitment and activation of phosphatases such as SHIP-1 and SHP-1 which further down modulate signaling pathways, attenuate cell activation and can mediate tolerance. Lyn also plays a role in the insulin signaling pathway. Activated Lyn phosphorylates insulin receptor substrate 1 (IRS1) leading to an increase in translocation of Glut-4 to the cell membrane and increased glucose utilization. It is the primary Src family member involved in signaling downstream of the B cell receptor. Lyn plays an unusual, 2-fold role in B cell receptor signaling; it is essential for initiation of signaling but is also later involved in negative regulation of the signal. Lyn has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|198245 cd10382, SH2_SOCS1, Src homology 2 (SH2) domain found in suppressor of cytokine signaling (SOCS) proteins

 Score = 43.1 bits (102), Expect = 1e-06
 Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 2/83 (2%)

Query: 7  LDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPD 66
          LD   +Y G ++  EA   L+    G++L+R+S      ++LS+K A G + ++I     
Sbjct: 7  LDASGFYWGPLSVEEAHAKLKREPVGTFLIRDSRQKNCFFALSVKMASGPVSIRI--LFK 64

Query: 67 TGKFILGQFSAPFDSVPEMIQHF 89
           GKF L      FD + ++++H+
Sbjct: 65 AGKFSLDGSKESFDCLFKLLEHY 87

SH2 domain found in SOCS proteins. SOCS was first recognized as a group of cytokine-inducible SH2 (CIS) domain proteins comprising eight family members in human (CIS and SOCS1-SOCS7). In addition to the SH2 domain, SOCS proteins have a variable N-terminal domain and a conserved SOCS box in the C-terminal domain. SOCS proteins bind to a substrate via their SH2 domain. The prototypical members, CIS and SOCS1-SOCS3, have been shown to regulate growth hormone signaling in vitro and in a classic negative feedback response compete for binding at phosphotyrosine sites in JAK kinase and receptor pathways to displace effector proteins and target bound receptors for proteasomal degradation. Loss of SOCS activity results in excessive cytokine signaling associated with a variety of hematopoietic, autoimmune, and inflammatory diseases and certain cancers. Members (SOCS4-SOCS7) were identified by their conserved SOCS box, an adapter motif of 3 helices that associates substrate binding domains, such as the SOCS SH2 domain, ankryin, and WD40 with ubiquitin ligase components. These show limited cytokine induction. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 98

>gnl|CDD|198279 cd10416, SH2_SH2D2A, Src homology 2 domain found in the SH2 domain containing protein 2A (SH2D2A)

 Score = 43.1 bits (101), Expect = 1e-06
 Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 2/87 (2%)

Query: 12 WYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFI 71
          W+HG +TR EAE +L    +G YLVR SES    + L+ +S     H  + +  D    +
Sbjct: 9  WFHGFITRREAERLLEPKPQGCYLVRFSES-AVTFVLTYRSRTCCRHFLLAQLRDGRHVV 67

Query: 72 LGQFSAPFDSVPEMIQHFAENRLPILG 98
          LG+ SA    + +++ H+  + L   G
Sbjct: 68 LGEDSA-HARLQDLLLHYTAHPLSPYG 93

SH2D2A contains a single SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 102

>gnl|CDD|198226 cd10363, SH2_Src_HCK, Src homology 2 (SH2) domain found in HCK

 Score = 43.0 bits (101), Expect = 2e-06
 Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 9/85 (10%)

Query: 12 WYHGSVTRHEAENILRNSNE--GSYLVRNSESNRPDYSLSLKSARG-----FMHMKIQRD 64
          W+   ++R +AE  L       GS+++R+SE+ +  YSLS++           H KI R 
Sbjct: 5  WFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPQHGDTVKHYKI-RT 63

Query: 65 PDTGKFILGQFSAPFDSVPEMIQHF 89
           D G F +   S  F ++ E++ H+
Sbjct: 64 LDNGGFYISPRST-FSTLQELVDHY 87

HCK is a member of the Src non-receptor type tyrosine kinase family of proteins and is expressed in hemopoietic cells. HCK is proposed to couple the Fc receptor to the activation of the respiratory burst. It may also play a role in neutrophil migration and in the degranulation of neutrophils. It has two different translational starts that have different subcellular localization. HCK has been shown to interact with BCR gene, ELMO1 Cbl gene, RAS p21 protein activator 1, RASA3, Granulocyte colony-stimulating factor receptor, ADAM15 and RAPGEF1. Like the other members of the Src family the SH2 domain in addition to binding the target, also plays an autoinhibitory role by binding to its C-terminal tail. In general SH2 domains are involved in signal transduction. HCK has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 104

>gnl|CDD|198216 cd10353, SH2_Nterm_RasGAP, N-terminal Src homology 2 (SH2) domain found in Ras GTPase-activating protein 1 (GAP)

 Score = 42.9 bits (101), Expect = 2e-06
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 9  QRNWYHGSVTRHEAENILRNSNE-GSYLVRNSESNRPDYSLSLKSARGFMHMKI 61
             WYHG + R  AE  LR + + GSYL+R S+     + LS  S  G  H +I
Sbjct: 18 TNQWYHGRLDRTIAEERLRQAGKLGSYLIRESDRRPGSFVLSFLSRTGVNHFRI 71

RasGAP is part of the GAP1 family of GTPase-activating proteins. The protein is located in the cytoplasm and stimulates the GTPase activity of normal RAS p21, but not its oncogenic counterpart. Acting as a suppressor of RAS function, the protein enhances the weak intrinsic GTPase activity of RAS proteins resulting in RAS inactivation, thereby allowing control of cellular proliferation and differentiation. Mutations leading to changes in the binding sites of either protein are associated with basal cell carcinomas. Alternative splicing results in two isoforms. The shorter isoform which lacks the N-terminal hydrophobic region, has the same activity, and is expressed in placental tissues. In general the longer isoform contains 2 SH2 domains, a SH3 domain, a pleckstrin homology (PH) domain, and a calcium-dependent phospholipid-binding C2 domain. The C-terminus contains the catalytic domain of RasGap which catalyzes the activation of Ras by hydrolyzing GTP-bound active Ras into an inactive GDP-bound form of Ras. This model contains the N-terminal SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 103

>gnl|CDD|198220 cd10357, SH2_ShkD_ShkE, Src homology 2 (SH2) domain found in SH2 domain-bearing protein kinases D and E (ShkD and ShkE)

 Score = 42.1 bits (99), Expect = 2e-06
 Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 4/58 (6%)

Query: 10 RNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRP---DYSLSLKSARGFMHMKIQRD 64
          ++W+HG ++R EAE  LR   EG++L+R S S  P    +++S K     +H +I R 
Sbjct: 10 KSWFHGDISRDEAEKRLRGRPEGTFLIRLS-STDPKKTPFTISKKKKSKPVHKRISRI 66

SH2-bearing genes cloned from Dictyostelium include two transcription factors, STATa and STATc, and a signaling factor, SHK1 (shkA). A database search of the Dictyostelium discoideum genome revealed two additional putative STAT sequences, dd-STATb and dd-STATd, and four additional putative SHK genes, dd-SHK2 (shkB), dd-SHK3 (shkC), dd-SHK4 (shkD), and dd-SHK5 (shkE). This model contains members of shkD and shkE. All of the SHK members are most closely related to the protein kinases found in plants. However these kinases in plants are not conjugated to any SH2 or SH2-like sequences. Alignment data indicates that the SHK SH2 domains carry some features of the STAT SH2 domains in Dictyostelium. When STATc's linker domain was used for a BLAST search, the sequence between the protein kinase domain and the SH2 domain (the linker) of SHK was recovered, suggesting a close relationship among these molecules within this region. SHK's linker domain is predicted to contain an alpha-helix which is indeed homologous to that of STAT. Based on the phylogenetic alignment, SH2 domains can be grouped into two categories, STAT-type and Src-type. SHK family members are in between, but are closer to the STAT-type which indicates a close relationship between SHK and STAT families in their SH2 domains and further supports the notion that SHKs linker-SH2 domain evolved from STAT or STATL (STAT-like Linker-SH2) domain found in plants. In SHK, STAT, and SPT6, the linker-SH2 domains all reside exclusively in the C-terminal regions. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 87

>gnl|CDD|198273 cd10410, SH2_SH2B1, Src homology 2 (SH2) domain found in SH2B adapter proteins (SH2B1, SH2B2, SH2B3)

 Score = 41.9 bits (98), Expect = 3e-06
 Identities = 25/98 (25%), Positives = 49/98 (50%), Gaps = 12/98 (12%)

Query: 5  KPLDQRNWYHGSVTRHEAENILRN---SNEGSYLVRNSESNRPDYSLSLKSARGFMHMKI 61
          +PL    W+HG ++R +A  ++      + G +LVR SE+ R +Y L+        H+++
Sbjct: 3  QPLSGYPWFHGMLSRLKAAQLVLEGGTGSHGVFLVRQSETRRGEYVLTFNFQGKAKHLRL 62

Query: 62 QRDPDTGKFILGQFSAP---FDSVPEMIQHFAENRLPI 96
            + +      GQ       F S+ +M++HF  + +P+
Sbjct: 63 SLNEE------GQCRVQHLWFQSIFDMLEHFRVHPIPL 94

SH2B1 (SH2-B, PSM), like other members of the SH2B adapter protein family, contains a pleckstrin homology domain, at least one dimerization domain, and a C-terminal SH2 domain which binds to phosphorylated tyrosines in a variety of tyrosine kinases. SH2B1 and SH2B2 function in signaling pathways found downstream of growth hormone receptor and receptor tyrosine kinases, including the insulin, insulin-like growth factor-I (IGF-I), platelet-derived growth factor (PDGF), nerve growth factor, hepatocyte growth factor, and fibroblast growth factor receptors. SH2B2beta, a new isoform of SH2B2, is an endogenous inhibitor of SH2B1 and/or SH2B2 (SH2B2alpha), negatively regulating insulin signaling and/or JAK2-mediated cellular responses. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 97

>gnl|CDD|199832 cd10417, SH2_SH2D7, Src homology 2 domain found in the SH2 domain containing protein 7 (SH2D7)

 Score = 41.8 bits (98), Expect = 5e-06
 Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 2/80 (2%)

Query: 12 WYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFI 71
          W+HG +TR + E +LR+   GS+L+R S+     Y LS + +    H  I +  +    I
Sbjct: 9  WFHGFITRKQTEQLLRDKALGSFLIRLSDR-ATGYILSYRGSDRCRHFVINQLRNRRYLI 67

Query: 72 LGQFSAPFDSVPEMIQHFAE 91
           G  S+   ++ E+++H+ E
Sbjct: 68 SGDTSS-HSTLAELVRHYQE 86

SH2D7 contains a single SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 102

>gnl|CDD|198234 cd10371, SH2_Src_Blk, Src homology 2 (SH2) domain found in B lymphoid kinase (Blk)

 Score = 41.5 bits (97), Expect = 6e-06
 Identities = 28/86 (32%), Positives = 51/86 (59%), Gaps = 8/86 (9%)

Query: 12 WYHGSVTRHEAE-NILRNSNE-GSYLVRNSESNRPDYSLSLK--SARG--FMHMKIQRDP 65
          W+  +++R +AE  +L   N+ GS+L+R SESN+  +SLS+K  + +G    H KI R  
Sbjct: 5  WFFRTISRKDAERQLLAPMNKAGSFLIRESESNKGAFSLSVKDVTTQGEVVKHYKI-RSL 63

Query: 66 DTGKFILGQFSAPFDSVPEMIQHFAE 91
          D G + +      F ++  ++QH+++
Sbjct: 64 DNGGYYISPRIT-FPTLQALVQHYSK 88

Blk is a member of the Src non-receptor type tyrosine kinase family of proteins. Blk is expressed in the B-cells. Unlike most other Src members Blk lacks cysteine residues in the SH4 domain that undergo palmitylation. Blk is required for the development of IL-17-producing gamma-delta T cells. Furthermore, Blk is expressed in lymphoid precursors and, in this capacity, plays a role in regulating thymus cellularity during ontogeny. Blk has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 100

>gnl|CDD|198209 cd10346, SH2_SH2B_family, Src homology 2 (SH2) domain found in SH2B adapter protein family

 Score = 40.9 bits (96), Expect = 9e-06
 Identities = 25/99 (25%), Positives = 49/99 (49%), Gaps = 12/99 (12%)

Query: 4  PKPLDQRNWYHGSVTRHEAEN-ILRN--SNEGSYLVRNSESNRPDYSLSLKSARGFMHMK 60
             L +  W+HG+++R +A   +L +     G +LVR SE+ R ++ L+        H++
Sbjct: 2  TAELSEYPWFHGTLSRSDAAQLVLHSGADGHGVFLVRQSETRRGEFVLTFNFQGRAKHLR 61

Query: 61 IQRDPDTGKFILGQFSAP---FDSVPEMIQHFAENRLPI 96
          +  +        GQ       F S+ +M++HF +N +P+
Sbjct: 62 LTLNEK------GQCRVQHLWFPSIFDMLEHFRQNPIPL 94

The SH2B adapter protein family has 3 members: SH2B1 (SH2-B, PSM), SH2B2 (APS), and SH2B3 (Lnk). SH2B family members contain a pleckstrin homology domain, at least one dimerization domain, and a C-terminal SH2 domain which binds to phosphorylated tyrosines in a variety of tyrosine kinases. SH2B1 and SH2B2 function in signaling pathways found downstream of growth hormone receptor and receptor tyrosine kinases, including the insulin, insulin-like growth factor-I (IGF-I), platelet-derived growth factor (PDGF), nerve growth factor, hepatocyte growth factor, and fibroblast growth factor receptors. SH2B2beta, a new isoform of SH2B2, is an endogenous inhibitor of SH2B1 and/or SH2B2 (SH2B2alpha), negatively regulating insulin signaling and/or JAK2-mediated cellular responses. SH2B3 negatively regulates lymphopoiesis and early hematopoiesis. The lnk-deficiency results in enhanced production of B cells, and expansion as well as enhanced function of hematopoietic stem cells (HSCs), demonstrating negative regulatory functions of Sh2b3/Lnk in cytokine signaling. Sh2b3/Lnk also functions in responses controlled by cell adhesion and in crosstalk between integrin- and cytokine-mediated signaling. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 97

>gnl|CDD|198260 cd10397, SH2_Tec_Btk, Src homology 2 (SH2) domain found in Tec protein, Bruton's tyrosine kinase (Btk)

 Score = 40.6 bits (95), Expect = 1e-05
 Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 10/94 (10%)

Query: 6  PLDQRNWYHGSVTRHEAENILRNSN-EGSYLVRNSESNRPDYSLSLKSARG------FMH 58
           L+   WY  ++TR +AE +L+    EG ++VR+S S    Y++S+ +           H
Sbjct: 2  SLEMYEWYSKNMTRSQAEQLLKQEGKEGGFIVRDS-SKAGKYTVSVFAKSAGDPQGVIRH 60

Query: 59 MKIQRDPDTGKFILGQFSAPFDSVPEMIQHFAEN 92
            +   P   ++ L +    F ++PE+I +   N
Sbjct: 61 YVVCSTP-QSQYYLAEKHL-FSTIPELINYHQHN 92

A member of the Tec protein tyrosine kinase Btk is expressed in bone marrow, spleen, all hematopoietic cells except T lymphocytes and plasma cells where it plays a crucial role in B cell maturation and mast cell activation. Btk has been shown to interact with GNAQ, PLCG2, protein kinase D1, B-cell linker, SH3BP5, caveolin 1, ARID3A, and GTF2I. Most of the Tec family members have a PH domain (Txk and the short (type 1) splice variant of Drosophila Btk29A are exceptions), a Tec homology (TH) domain, a SH3 domain, a SH2 domain, and a protein kinase catalytic domain. Btk is implicated in the primary immunodeficiency disease X-linked agammaglobulinemia (Bruton's agammaglobulinemia). The TH domain consists of a Zn2+-binding Btk motif and a proline-rich region. The Btk motif is found in Tec kinases, Ras GAP, and IGBP. It is crucial for the function of Tec PH domains and it's lack of presence in Txk is not surprising since it lacks a PH domain. The type 1 splice form of the Drosophila homolog also lacks both the PH domain and the Btk motif. The proline-rich regions are highly conserved for the most part with the exception of Bmx whose residues surrounding the PXXP motif are not conserved (TH-like) and Btk29A which is entirely unique with large numbers of glycine residues (TH-extended). Tec family members all lack a C-terminal tyrosine having an autoinhibitory function in its phosphorylated state. Two tyrosine phosphorylation (pY) sites have been identified in Btk: one located in the activation loop of the catalytic domain which regulates the transition between open (active) and closed (inactive) states and the other in its SH3 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 106

>gnl|CDD|198208 cd10345, SH2_C-SH2_Zap70_Syk_like, C-terminal Src homology 2 (SH2) domain found in Zeta-chain-associated protein kinase 70 (ZAP-70) and Spleen tyrosine kinase (Syk) proteins

 Score = 39.7 bits (92), Expect = 2e-05
 Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 5/80 (6%)

Query: 12 WYHGSVTRHEAENILRN--SNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGK 69
          W+HG ++R E+E I+       G +L+R +  N   Y+L L      +H +I +D  TGK
Sbjct: 2  WFHGKISREESEQIVLIGSKTNGKFLIR-ARDNNGSYALCLLHEGKVLHYRIDKD-KTGK 59

Query: 70 FILGQFSAPFDSVPEMIQHF 89
            + +    FD++ ++++H+
Sbjct: 60 LSIPE-GKKFDTLWQLVEHY 78

ZAP-70 and Syk comprise a family of hematopoietic cell specific protein tyrosine kinases (PTKs) that are required for antigen and antibody receptor function. ZAP-70 is expressed in T and natural killer (NK) cells and Syk is expressed in B cells, mast cells, polymorphonuclear leukocytes, platelets, macrophages, and immature T cells. They are required for the proper development of T and B cells, immune receptors, and activating NK cells. They consist of two N-terminal Src homology 2 (SH2) domains and a C-terminal kinase domain separated from the SH2 domains by a linker or hinge region. Phosphorylation of both tyrosine residues within the Immunoreceptor Tyrosine-based Activation Motifs (ITAM; consensus sequence Yxx[LI]x(7,8)Yxx[LI]) by the Src-family PTKs is required for efficient interaction of ZAP-70 and Syk with the receptor subunits and for receptor function. ZAP-70 forms two phosphotyrosine binding pockets, one of which is shared by both SH2 domains. In Syk the two SH2 domains do not form such a phosphotyrosine-binding site. The SH2 domains here are believed to function independently. In addition, the two SH2 domains of Syk display flexibility in their relative orientation, allowing Syk to accommodate a greater variety of spacing sequences between the ITAM phosphotyrosines and singly phosphorylated non-classical ITAM ligands. This model contains the C-terminus SH2 domains of both Syk and Zap70. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 95

>gnl|CDD|198262 cd10399, SH2_Tec_Bmx, Src homology 2 (SH2) domain found in Tec protein, Bmx

 Score = 39.6 bits (92), Expect = 3e-05
 Identities = 28/95 (29%), Positives = 53/95 (55%), Gaps = 10/95 (10%)

Query: 5  KPLDQRNWYHGSVTRHEAENILRNS-NEGSYLVRNSESNRPDYSLSL-----KSARGFM- 57
          + LD  +W+ G+++R ++E +LR    EG+++VRNS S    Y++SL        +G + 
Sbjct: 1  ENLDAYDWFAGNISRSQSEQLLRQKGKEGAFMVRNS-SQVGMYTVSLFSKAVNDKKGTVK 59

Query: 58 HMKIQRDPDTGKFILGQFSAPFDSVPEMIQHFAEN 92
          H  +  + +  K  L + +  FDS+P++I +   N
Sbjct: 60 HYHVHTNAEN-KLYLAE-NYCFDSIPKLIHYHQHN 92

A member of the Tec protein tyrosine kinase Bmx is expressed in the endothelium of large arteries, fetal endocardium, adult endocardium of the left ventricle, bone marrow, lung, testis, granulocytes, myeloid cell lines, and prostate cell lines. Bmx is involved in the regulation of Rho and serum response factor (SRF). Bmx has been shown to interact with PAK1, PTK2, PTPN21, and RUFY1. Most of the Tec family members have a PH domain (Txk and the short (type 1) splice variant of Drosophila Btk29A are exceptions), a Tec homology (TH) domain, a SH3 domain, a SH2 domain, and a protein kinase catalytic domain. The TH domain consists of a Zn2+-binding Btk motif and a proline-rich region. The Btk motif is found in Tec kinases, Ras GAP, and IGBP. It is crucial for the function of Tec PH domains. It is not present in Txk and the type 1 splice form of the Drosophila homolog. The proline-rich regions are highly conserved for the most part with the exception of Bmx whose residues surrounding the PXXP motif are not conserved (TH-like) and Btk29A which is entirely unique with large numbers of glycine residues (TH-extended). Tec family members all lack a C-terminal tyrosine having an autoinhibitory function in its phosphorylated state. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 106

>gnl|CDD|198269 cd10406, SH2_Vav2, Src homology 2 (SH2) domain found in the Vav2 proteins

 Score = 39.3 bits (91), Expect = 3e-05
 Identities = 19/84 (22%), Positives = 48/84 (57%), Gaps = 5/84 (5%)

Query: 12 WYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMK-IQRDPDTGKF 70
          W+ G++ R + +N+L++   G+YL+R   +    +++S+K      H+K +++D     +
Sbjct: 7  WFAGNMERQQTDNLLKSHASGTYLIRERPAEAERFAISIKFNDEVKHIKVVEKD----NW 62

Query: 71 ILGQFSAPFDSVPEMIQHFAENRL 94
          I    +  F+S+ E+++++  + L
Sbjct: 63 IHITEAKKFESLLELVEYYQCHSL 86

Proto-oncogene vav is a member of the Dbl family of guanine nucleotide exchange factors (GEF) for the Rho family of GTP binding proteins. All vavs are activated by tyrosine phosphorylation leading to their activation. There are three Vav mammalian family members: Vav1 which is expressed in the hematopoietic system, and Vav2 and Vav3 are more ubiquitously expressed. Vav2 is a GEF for RhoA, RhoB and RhoG and may activate Rac1 and Cdc42. Vav2 has been shown to interact with CD19 and Grb2. Alternatively spliced transcript variants encoding different isoforms have been found for Vav2. Vav proteins are involved in several processes that require cytoskeletal reorganization, such as the formation of the immunological synapse (IS), phagocytosis, platelet aggregation, spreading, and transformation. Vavs function as guanine nucleotide exchange factors (GEFs) for the Rho/Rac family of GTPases. Vav family members have several conserved motifs/domains including: a leucine-rich region, a leucine-zipper, a calponin homology (CH) domain, an acidic domain, a Dbl-homology (DH) domain, a pleckstrin homology (PH) domain, a cysteine-rich domain, 2 SH3 domains, a proline-rich region, and a SH2 domain. Vavs are the only known Rho GEFs that have both the DH/PH motifs and SH2/SH3 domains in the same protein. The leucine-rich helix-loop-helix (HLH) domain is thought to be involved in protein heterodimerization with other HLH proteins and it may function as a negative regulator by forming inactive heterodimers. The CH domain is usually involved in the association with filamentous actin, but in Vav it controls NFAT stimulation, Ca2+ mobilization, and its transforming activity. Acidic domains are involved in protein-protein interactions and contain regulatory tyrosines. The DH domain is a GDP-GTP exchange factor on Rho/Rac GTPases. The PH domain in involved in interactions with GTP-binding proteins, lipids and/or phosphorylated serine/threonine residues. The SH3 domain is involved in localization of proteins to specific sites within the cell interacting with protein with proline-rich sequences. The SH2 domain mediates a high affinity interaction with tyrosine phosphorylated proteins. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 103

>gnl|CDD|198278 cd10415, SH2_Grb10, Src homology 2 (SH2) domain found in the growth factor receptor bound, subclass 10 (Grb10) proteins

 Score = 39.2 bits (91), Expect = 5e-05
 Identities = 21/88 (23%), Positives = 47/88 (53%), Gaps = 4/88 (4%)

Query: 10 RNWYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDT 67
          ++W+HG ++R E+  I++     +G +L+R+S+SN   + L+L   +   + +I    D 
Sbjct: 5  QHWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPCEDD 64

Query: 68 GK--FILGQFSAPFDSVPEMIQHFAENR 93
          G+  F L   +  F  + +++  +  N+
Sbjct: 65 GQTFFSLDDGNTKFSDLIQLVDFYQLNK 92

The Grb family binds to the epidermal growth factor receptor (EGFR, erbB1) via their SH2 domains. Grb10 is part of the Grb7 family of proteins which also includes Grb7, and Grb14. They are composed of an N-terminal Proline-rich domain, a Ras Associating-like (RA) domain, a Pleckstrin Homology (PH) domain, a phosphotyrosine interaction region (PIR, BPS) and a C-terminal SH2 domain. The SH2 domains of Grb7, Grb10 and Grb14 preferentially bind to a different RTK. Grb10 has been shown to interact with many different proteins, including the insulin and IGF1 receptors, platelet-derived growth factor (PDGF) receptor-beta, Ret, Kit, Raf1 and MEK1, and Nedd4. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 108

>gnl|CDD|198225 cd10362, SH2_Src_Lck, Src homology 2 (SH2) domain in lymphocyte cell kinase (Lck)

 Score = 38.7 bits (90), Expect = 7e-05
 Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 9/86 (10%)

Query: 12 WYHGSVTRHEAE--NILRNSNEGSYLVRNSESNRPDYSLSLK-----SARGFMHMKIQRD 64
          W+  +++R++AE   +   +  GS+L+R SE+    +SLS++           H KI R+
Sbjct: 5  WFFKNLSRNDAERQLLAPGNTHGSFLIRESETTAGSFSLSVRDFDQNQGEVVKHYKI-RN 63

Query: 65 PDTGKFILGQFSAPFDSVPEMIQHFA 90
           D G F +      F  + E+++H+ 
Sbjct: 64 LDNGGFYISP-RITFPGLHELVRHYT 88

Lck is a member of the Src non-receptor type tyrosine kinase family of proteins. It is expressed in the brain, T-cells, and NK cells. The unique domain of Lck mediates its interaction with two T-cell surface molecules, CD4 and CD8. It associates with their cytoplasmic tails on CD4 T helper cells and CD8 cytotoxic T cells to assist signaling from the T cell receptor (TCR) complex. When the T cell receptor is engaged by the specific antigen presented by MHC, Lck phosphorylase the intracellular chains of the CD3 and zeta-chains of the TCR complex, allowing ZAP-70 to bind them. Lck then phosphorylates and activates ZAP-70, which in turn phosphorylates Linker of Activated T cells (LAT), a transmembrane protein that serves as a docking site for proteins including: Shc-Grb2-SOS, PI3K, and phospholipase C (PLC). The tyrosine phosphorylation cascade culminates in the intracellular mobilization of a calcium ions and activation of important signaling cascades within the lymphocyte, including the Ras-MEK-ERK pathway, which goes on to activate certain transcription factors such as NFAT, NF-kappaB, and AP-1. These transcription factors regulate the production cytokines such as Interleukin-2 that promote long-term proliferation and differentiation of the activated lymphocytes. The N-terminal tail of Lck is myristoylated and palmitoylated and it tethers the protein to the plasma membrane of the cell. Lck also contains a SH3 domain, a SH2 domain, and a C-terminal tyrosine kinase domain. Lck has 2 phosphorylation sites, the first an autophosphorylation site that is linked to activation of the protein and the second which is phosphorylated by Csk, which inhibits it. Lck is also inhibited by SHP-1 dephosphorylation and by Cbl ubiquitin ligase, which is part of the ubiquitin-mediated pathway. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|198181 cd09927, SH2_Tensin_like, Src homology 2 domain found in Tensin-like proteins

 Score = 38.6 bits (90), Expect = 7e-05
 Identities = 14/43 (32%), Positives = 28/43 (65%)

Query: 12 WYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSAR 54
          WY  +++R +A  +L++   G++LVR+S + +  Y L++K A 
Sbjct: 5  WYKPNISRDQAIALLKDKPPGTFLVRDSTTYKGAYGLAVKVAT 47

SH2 domain found in Tensin-like proteins. The Tensins are a family of intracellular proteins that interact with receptor tyrosine kinases (RTKs), integrins, and actin. They are thought act as signaling bridges between the extracellular space and the cytoskeleton. There are four homologues: Tensin1, Tensin2 (TENC1, C1-TEN), Tensin3 and Tensin4 (cten), all of which contain a C-terminal tandem SH2-PTB domain pairing, as well as actin-binding regions that may localize them to focal adhesions. The isoforms of Tensin2 and Tensin3 contain N-terminal C1 domains, which are atypical and not expected to bind to phorbol esters. Tensins 1-3 contain a phosphatase (PTPase) and C2 domain pairing which resembles PTEN (phosphatase and tensin homologue deleted on chromosome 10) protein. PTEN is a lipid phosphatase that dephosphorylates phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3) to yield phosphatidylinositol 4,5-bisphosphate (PtdIns(4,5)P2). As PtdIns(3,4,5)P3 is the product of phosphatidylinositol 3-kinase (PI3K) activity, PTEN is therefore a key negative regulator of the PI3K pathway. Because of their PTEN-like domains, the Tensins may also possess phosphoinositide-binding or phosphatase capabilities. However, only Tensin2 and Tensin3 have the potential to be phosphatases since only their PTPase domains contain a cysteine residue that is essential for catalytic activity. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 116

>gnl|CDD|198221 cd10358, SH2_PTK6_Brk, Src homology 2 domain found in protein-tyrosine kinase-6 (PTK6) which is also known as breast tumor kinase (Brk)

 Score = 38.2 bits (88), Expect = 9e-05
 Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 4/85 (4%)

Query: 12 WYHGSVTRHEAENILR--NSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGK 69
          W+ G ++R EA   L+   +  G++L+R SE    DY LS++  +   H KI R    G+
Sbjct: 4  WFFGCISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRR-AGGR 62

Query: 70 FILGQFSAPFDSVPEMIQHFAENRL 94
            L + +  F S+PE++ +     L
Sbjct: 63 LHLNE-AVSFLSLPELVNYHRAQSL 86

Human protein-tyrosine kinase-6 (PTK6, also known as breast tumor kinase (Brk)) is a member of the non-receptor protein-tyrosine kinase family and is expressed in two-thirds of all breast tumors. PTK6 (9). PTK6 contains a SH3 domain, a SH2 domain, and catalytic domains. For the case of the non-receptor protein-tyrosine kinases, the SH2 domain is typically involved in negative regulation of kinase activity by binding to a phosphorylated tyrosine residue near to the C terminus. The C-terminal sequence of PTK6 (PTSpYENPT where pY is phosphotyrosine) is thought to be a self-ligand for the SH2 domain. The structure of the SH2 domain resembles other SH2 domains except for a centrally located four-stranded antiparallel beta-sheet (strands betaA, betaB, betaC, and betaD). There are also differences in the loop length which might be responsible for PTK6 ligand specificity. There are two possible means of regulation of PTK6: autoinhibitory with the phosphorylation of Tyr playing a role in its negative regulation and autophosphorylation at this site, though it has been shown that PTK6 might phosphorylate signal transduction-associated proteins Sam68 and signal transducing adaptor family member 2 (STAP/BKS) in vivo. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 100

>gnl|CDD|198270 cd10407, SH2_Vav3, Src homology 2 (SH2) domain found in the Vav3 proteins

 Score = 37.7 bits (87), Expect = 2e-04
 Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 5/84 (5%)

Query: 12 WYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKI-QRDPDTGKF 70
          WY G++ R +AE  L N    +YLVR+      +Y++S+K      H+KI  RD   G F
Sbjct: 7  WYAGAMERLQAETELINRVNSTYLVRHRTKESGEYAISIKYNNEVKHIKILTRD---GFF 63

Query: 71 ILGQFSAPFDSVPEMIQHFAENRL 94
           + + +  F S+ E+++++  + L
Sbjct: 64 HIAE-NRKFKSLMELVEYYKHHSL 86

Proto-oncogene vav is a member of the Dbl family of guanine nucleotide exchange factors (GEF) for the Rho family of GTP binding proteins. All vavs are activated by tyrosine phosphorylation leading to their activation. There are three Vav mammalian family members: Vav1 which is expressed in the hematopoietic system, and Vav2 and Vav3 are more ubiquitously expressed. Vav3 preferentially activates RhoA, RhoG and, to a lesser extent, Rac1. Alternatively spliced transcript variants encoding different isoforms have been described for this gene. VAV3 has been shown to interact with Grb2. Vav proteins are involved in several processes that require cytoskeletal reorganization, such as the formation of the immunological synapse (IS), phagocytosis, platelet aggregation, spreading, and transformation. Vavs function as guanine nucleotide exchange factors (GEFs) for the Rho/Rac family of GTPases. Vav family members have several conserved motifs/domains including: a leucine-rich region, a leucine-zipper, a calponin homology (CH) domain, an acidic domain, a Dbl-homology (DH) domain, a pleckstrin homology (PH) domain, a cysteine-rich domain, 2 SH3 domains, a proline-rich region, and a SH2 domain. Vavs are the only known Rho GEFs that have both the DH/PH motifs and SH2/SH3 domains in the same protein. The leucine-rich helix-loop-helix (HLH) domain is thought to be involved in protein heterodimerization with other HLH proteins and it may function as a negative regulator by forming inactive heterodimers. The CH domain is usually involved in the association with filamentous actin, but in Vav it controls NFAT stimulation, Ca2+ mobilization, and its transforming activity. Acidic domains are involved in protein-protein interactions and contain regulatory tyrosines. The DH domain is a GDP-GTP exchange factor on Rho/Rac GTPases. The PH domain in involved in interactions with GTP-binding proteins, lipids and/or phosphorylated serine/threonine residues. The SH3 domain is involved in localization of proteins to specific sites within the cell interacting with protein with proline-rich sequences. The SH2 domain mediates a high affinity interaction with tyrosine phosphorylated proteins. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 103

>gnl|CDD|198275 cd10412, SH2_SH2B3, Src homology 2 (SH2) domain found in SH2B adapter proteins (SH2B1, SH2B2, SH2B3)

 Score = 36.8 bits (85), Expect = 3e-04
 Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 6/88 (6%)

Query: 12 WYHGSVTRHEAENILRN---SNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTG 68
          W+HG ++R +A  +++       G +LVR SE+ R +Y L+        H+++    + G
Sbjct: 10 WFHGPISRVKAAQLVQLQGPDAHGVFLVRQSETRRGEYVLTFNFQGRAKHLRLSLT-ERG 68

Query: 69 KFILGQFSAPFDSVPEMIQHFAENRLPI 96
          +  +      F SV +M+ HF  + +P+
Sbjct: 69 QCRVQHLH--FPSVVDMLHHFQRSPIPL 94

SH2B3 (Lnk), like other members of the SH2B adapter protein family, contains a pleckstrin homology domain, at least one dimerization domain, and a C-terminal SH2 domain which binds to phosphorylated tyrosines in a variety of tyrosine kinases. SH2B3 negatively regulates lymphopoiesis and early hematopoiesis. The lnk-deficiency results in enhanced production of B cells, and expansion as well as enhanced function of hematopoietic stem cells (HSCs), demonstrating negative regulatory functions of Sh2b3/Lnk in cytokine signaling. Sh2b3/Lnk also functions in responses controlled by cell adhesion and in crosstalk between integrin- and cytokine-mediated signaling. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 97

>gnl|CDD|198263 cd10400, SH2_SAP1a, Src homology 2 (SH2) domain found in SLAM-associated protein (SAP) 1a

 Score = 36.7 bits (85), Expect = 4e-04
 Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)

Query: 13 YHGSVTRHEAENILRNSN-EGSYLVRNSES 41
          YHG ++R   E +L  +  +GSYL+R+SES
Sbjct: 6  YHGKISRETGEKLLLAAGLDGSYLLRDSES 35

The X-linked lymphoproliferative syndrome (XLP) gene encodes SAP (also called SH2D1A/DSHP) a protein that consists of a 5 residue N-terminus, a single SH2 domain, and a short 25 residue C-terminal tail. XLP is characterized by an extreme sensitivity to Epstein-Barr virus. Both T and natural killer (NK) cell dysfunctions have been seen in XLP patients. SAP binds the cytoplasmic tail of Signaling lymphocytic activation molecule (SLAM), 2B4, Ly-9, and CD84. SAP is believed to function as a signaling inhibitor, by blocking or regulating binding of other signaling proteins. SAP and the SAP-like protein EAT-2 recognize the sequence motif TIpYXX[VI], which is found in the cytoplasmic domains of a restricted number of T, B, and NK cell surface receptors and are proposed to be natural inhibitors or regulators of the physiological role of a small family of receptors on the surface of these cells. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 103

>gnl|CDD|198277 cd10414, SH2_Grb14, Src homology 2 (SH2) domain found in the growth factor receptor bound, subclass 14 (Grb14) proteins

 Score = 36.4 bits (84), Expect = 4e-04
 Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 4/86 (4%)

Query: 12 WYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGK 69
          W+H  ++R EA+ ++      +G +LVR+S+SN   + LS+   +   H +I    D G+
Sbjct: 7  WFHHKISRDEAQRLIIQQGLVDGVFLVRDSQSNPRTFVLSMSHGQKIKHFQIIPVEDDGE 66

Query: 70 --FILGQFSAPFDSVPEMIQHFAENR 93
              L      F  + ++++ +  N+
Sbjct: 67 LFHTLDDGHTRFTDLIQLVEFYQLNK 92

The Grb family binds to the epidermal growth factor receptor (EGFR, erbB1) via their SH2 domains. Grb14 is part of the Grb7 family of proteins which also includes Grb7, and Grb14. They are composed of an N-terminal Proline-rich domain, a Ras Associating-like (RA) domain, a Pleckstrin Homology (PH) domain, a phosphotyrosine interaction region (PIR, BPS) and a C-terminal SH2 domain. The SH2 domains of Grb7, Grb10 and Grb14 preferentially bind to a different RTK. Grb14 binds to Fibroblast Growth Factor Receptor (FGFR) and weakly to the erbB2 receptor. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 108

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	113
cd00173	94	SH2 Src homology 2 domains; Signal transduction, i	99.95
smart00252	84	SH2 Src homology 2 domains. Src homology 2 domains	99.95
PF00017	77	SH2: SH2 domain; InterPro: IPR000980 The Src homol	99.94
KOG4226|consensus	379		99.9
KOG4637|consensus	464		99.89
KOG0790|consensus	600		99.87
KOG4278|consensus	1157		99.85
KOG1264|consensus	1267		99.84
KOG4792|consensus	293		99.83
KOG2996|consensus	865		99.77
KOG1264|consensus	1267		99.76
KOG0197|consensus	468		99.74
KOG0194|consensus	474		99.73
KOG4637|consensus	464		99.68
KOG0790|consensus	600		99.64
KOG1930|consensus	483		99.55
KOG3601|consensus	222		99.49
KOG3697|consensus	345		99.07
KOG3751|consensus	622		98.94
PF14633	220	SH2_2: SH2 domain; PDB: 3GXX_A 3GXW_B 3PJP_B 2XP1_	98.79
KOG4566|consensus	258		98.23
KOG1856|consensus	1299		97.88
PF14633	220	SH2_2: SH2 domain; PDB: 3GXX_A 3GXW_B 3PJP_B 2XP1_	96.98
PF02762	86	Cbl_N3: CBL proto-oncogene N-terminus, SH2-like do	96.05
KOG1856|consensus	1299		95.23
KOG3667|consensus	682		90.81
smart00557	93	IG_FLMN Filamin-type immunoglobulin domains. These	87.41
KOG1785|consensus	563		82.36

>cd00173 SH2 Src homology 2 domains; Signal transduction, involved in recognition of phosphorylated tyrosine (pTyr)

Probab=99.95  E-value=1.8e-27  Score=140.41  Aligned_cols=94  Identities=38%  Similarity=0.731  Sum_probs=82.1

Q ss_pred             CceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCHHHHHHHHh
Q psy12508         11 NWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSVPEMIQHFA   90 (113)
Q Consensus        11 ~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl~~lv~~y~   90 (113)
                      |||||.|+|++|+++|++.++|+||||.|.+.++.|+||++..++++|++|...+ ++.+... ....|+||.|||+||+
T Consensus         1 ~w~~g~i~r~~Ae~~L~~~~~G~FLiR~s~~~~~~~~Lsv~~~~~v~H~~I~~~~-~~~~~~~-~~~~f~sl~eLv~~y~   78 (94)
T cd00173           1 PWYHGPISREEAEELLKKKPDGTFLVRDSESSPGDYVLSVRVKGKVKHYRIERTD-DGYYLLG-EGRSFPSLPELIEHYQ   78 (94)
T ss_pred             CccccCCCHHHHHHHHhcCCCceEEEEecCCCCCCEEEEEEECCEEEEEEEEECC-CCeEEec-CCCccCCHHHHHHHHh
Confidence            7999999999999999988999999999998889999999999999999999887 4444443 3579999999999999


Q ss_pred             hCCcccCCCcceEecCcc
Q psy12508         91 ENRLPILGAEHMCLLHPM  108 (113)
Q Consensus        91 ~~~~~~~~~~~~~L~~pv  108 (113)
                      .+++  .+...+.|+.|+
T Consensus        79 ~~~~--~~~~~~~L~~p~   94 (94)
T cd00173          79 KNPL--SDGLGVKLRYPV   94 (94)
T ss_pred             hCcc--CCCcccEeCCcC
Confidence            9987  344577888875

SH2 domains typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.

>smart00252 SH2 Src homology 2 domains

Probab=99.95  E-value=4.3e-27  Score=136.39  Aligned_cols=83  Identities=41%  Similarity=0.793  Sum_probs=76.5

Q ss_pred             CCceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCHHHHHHHH
Q psy12508         10 RNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSVPEMIQHF   89 (113)
Q Consensus        10 ~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl~~lv~~y   89 (113)
                      +|||||.|+|++|+++|.+.++|+||||.|.+.++.|+||++..+.++|++|...+ +|.|.+.+ ...|+||.|||+||
T Consensus         1 ~~w~~g~i~r~~Ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~~~h~~I~~~~-~~~~~l~~-~~~F~sl~eLI~~y   78 (84)
T smart00252        1 QPWYHGFISREEAEKLLKNEGDGDFLVRDSESEPGDYVLSVRVKGKVKHYRIRRNE-DGKFYLDG-GRKFPSLVELVEHY   78 (84)
T ss_pred             CCeecccCCHHHHHHHHhcCCCcEEEEEcCCCCCCCEEEEEEECCEEEEEEEEECC-CCcEEECC-CCccCCHHHHHHHH
Confidence            58999999999999999887799999999998789999999999999999999876 57899987 68999999999999


Q ss_pred             hhCCc
Q psy12508         90 AENRL   94 (113)
Q Consensus        90 ~~~~~   94 (113)
                      +.+++
T Consensus        79 ~~~~~   83 (84)
T smart00252       79 QKNSL   83 (84)
T ss_pred             hhCCC
Confidence            98865

Src homology 2 domains bind phosphotyrosine-containing polypeptides via 2 surface pockets. Specificity is provided via interaction with residues that are distinct from the phosphotyrosine. Only a single occurrence of a SH2 domain has been found in S. cerevisiae.

>PF00017 SH2: SH2 domain; InterPro: IPR000980 The Src homology 2 (SH2) domain is a protein domain of about 100 amino-acid residues first identified as a conserved sequence region between the oncoproteins Src and Fps []

Probab=99.94  E-value=6.3e-26  Score=129.51  Aligned_cols=76  Identities=33%  Similarity=0.720  Sum_probs=70.2

Q ss_pred             ceeecCCHHHHHHHhcC-CCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCHHHHHHHH
Q psy12508         12 WYHGSVTRHEAENILRN-SNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSVPEMIQHF   89 (113)
Q Consensus        12 w~~g~i~r~~ae~lL~~-~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl~~lv~~y   89 (113)
                      ||||.|+|++|+++|+. .++|+||||.|.+.++.|+||++..++++|++|.+.+ ++.|.+.+ ...|+||.+||+||
T Consensus         1 W~~g~isr~~Ae~~L~~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~-~~~~~~~~-~~~F~sl~~LV~~y   77 (77)
T PF00017_consen    1 WFHGFISRQEAERLLMQGKPDGTFLVRPSSSKPGKYVLSVRFDGKVKHFRINRTE-NGGYFLSD-GKKFPSLSDLVEHY   77 (77)
T ss_dssp             TBEESSHHHHHHHHHHTTSSTTEEEEEEESSSTTSEEEEEEETTEEEEEEEEEET-TSEEESST-SSEBSSHHHHHHHH
T ss_pred             CcCCCCCHHHHHHHHHhcCCCCeEEEEeccccccccccccccccccEEEEEEecC-CceEEccC-CCcCCCHHHHHHhC
Confidence            99999999999999998 8999999999998889999999999999999999987 55577766 46799999999998

Similar sequences were later found in many other intracellular signal-transducing proteins []. SH2 domains function as regulatory modules of intracellular signalling cascades by interacting with high affinity to phosphotyrosine-containing target peptides in a sequence-specific, SH2 domains recognise between 3-6 residues C-terminal to the phosphorylated tyrosine in a fashion that differs from one SH2 domain to another, and strictly phosphorylation-dependent manner [, , , ]. They are found in a wide variety of protein contexts e.g., in association with catalytic domains of phospholipase Cy (PLCy) and the non-receptor protein tyrosine kinases; within structural proteins such as fodrin and tensin; and in a group of small adaptor molecules, i.e Crk and Nck. The domains are frequently found as repeats in a single protein sequence and will then often bind both mono- and di-phosphorylated substrates. The structure of the SH2 domain belongs to the alpha+beta class, its overall shape forming a compact flattened hemisphere. The core structural elements comprise a central hydrophobic anti-parallel beta-sheet, flanked by 2 short alpha-helices. The loop between strands 2 and 3 provides many of the binding interactions with the phosphate group of its phosphopeptide ligand, and is hence designated the phosphate binding loop, the phosphorylated ligand binds perpendicular to the beta-sheet and typically interacts with the phosphate binding loop and a hydrophobic binding pocket that interacts with a pY+3 side chain. The N- and C-termini of the domain are close together in space and on the opposite face from the phosphopeptide binding surface and it has been speculated that this has facilitated their integration into surface-exposed regions of host proteins [].; GO: 0005515 protein binding; PDB: 1M27_A 1KA6_A 1D4W_B 1D4T_A 1D1Z_B 1KA7_A 1UUR_A 1UUS_A 1BLJ_A 1BLK_A ....

>KOG4226|consensus

Probab=99.90  E-value=3e-23  Score=140.24  Aligned_cols=101  Identities=33%  Similarity=0.607  Sum_probs=91.2

Q ss_pred             CCCCCCceeecCCHHHHHHHhcC-CCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCHHH
Q psy12508          6 PLDQRNWYHGSVTRHEAENILRN-SNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSVPE   84 (113)
Q Consensus         6 ~l~~~~w~~g~i~r~~ae~lL~~-~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl~~   84 (113)
                      .++.+|||.|.|+|.+||.+|.. +.+|+||||+|++++|+|++|++..++-+||++...+  +.|+++.  +.|.++.+
T Consensus       277 ~~ag~~WYyG~itR~qae~~Ln~hG~eGdFLiRDSEsnpgD~SvSlka~grNKHFkVq~~d--~~ycIGq--RkF~tmd~  352 (379)
T KOG4226|consen  277 RFAGRPWYYGNITRHQAECALNEHGHEGDFLIRDSESNPGDFSVSLKASGRNKHFKVQLVD--NVYCIGQ--RKFHTMDE  352 (379)
T ss_pred             cccCCcceeccccHHHHHHHHhccCccCceEEecCCCCCcceeEEeeccCCCcceEEEEec--ceEEecc--ceeccHHH
Confidence            47889999999999999999954 7999999999999999999999999999999999875  8999997  89999999


Q ss_pred             HHHHHhhCCcccCC-CcceEecCcccc
Q psy12508         85 MIQHFAENRLPILG-AEHMCLLHPMIE  110 (113)
Q Consensus        85 lv~~y~~~~~~~~~-~~~~~L~~pv~~  110 (113)
                      ||+||++.++.... ++.+.|.+|+++
T Consensus       353 Lv~HY~kaPIfts~qgEKLyLvr~Lpk  379 (379)
T KOG4226|consen  353 LVEHYKKAPIFTSEQGEKLYLVRALPK  379 (379)
T ss_pred             HHHhhhcCCceecCCCceEEEeccCCC
Confidence            99999999986654 466888888764

>KOG4637|consensus

Probab=99.89  E-value=2e-23  Score=145.53  Aligned_cols=104  Identities=30%  Similarity=0.587  Sum_probs=94.4

Q ss_pred             CCCCCCCCceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCHH
Q psy12508          4 PKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSVP   83 (113)
Q Consensus         4 ~~~l~~~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl~   83 (113)
                      ++++...+||||.|+|+++...|.+.++|+||||+..+.+|.|+|+++..+.++-++|.+.+  |+|.+.+ +-.|+|+.
T Consensus        17 ~~~L~~a~WYWgdisReev~~~L~d~PDGsFlVRdAstm~GdYTLtl~k~g~~KLikI~h~D--gKyGF~d-~ltf~SVV   93 (464)
T KOG4637|consen   17 EDELQDAEWYWGDISREEVNKKLRDQPDGSFLVRDASTMQGDYTLTLRKGGNNKLIKIVHRD--GKYGFSD-PLTFNSVV   93 (464)
T ss_pred             chhhhhccccccccCHHHHHHHhcCCCCCcEEeeccccCCCceEEEEecCCccceeeeEEec--CccCCCC-chhhHHHH
Confidence            45688999999999999999999999999999999988889999999999999999999876  8888876 57999999


Q ss_pred             HHHHHHhhCCcccCCCc-ceEecCcccc
Q psy12508         84 EMIQHFAENRLPILGAE-HMCLLHPMIE  110 (113)
Q Consensus        84 ~lv~~y~~~~~~~~~~~-~~~L~~pv~~  110 (113)
                      +||+||...++...+.. .+.|.+||.+
T Consensus        94 elIn~yr~~SL~~yN~~LDvrLlyPVs~  121 (464)
T KOG4637|consen   94 ELINHYRNESLAQYNPKLDVRLLYPVSR  121 (464)
T ss_pred             HHHHHHhhhHHHhhCcccceeeechHHH
Confidence            99999999999877653 7999999976

>KOG0790|consensus

Probab=99.87  E-value=4.4e-22  Score=142.02  Aligned_cols=102  Identities=28%  Similarity=0.575  Sum_probs=90.8

Q ss_pred             CCCCCCceeecCCHHHHHHHhcC-CCCceEEEEecCCCCCcEEEEEEeCC---------eeEEEEEEecCCCCcEEECcC
Q psy12508          6 PLDQRNWYHGSVTRHEAENILRN-SNEGSYLVRNSESNRPDYSLSLKSAR---------GFMHMKIQRDPDTGKFILGQF   75 (113)
Q Consensus         6 ~l~~~~w~~g~i~r~~ae~lL~~-~~~G~FLvR~s~~~~~~~~Lsv~~~~---------~v~h~~I~~~~~~~~~~~~~~   75 (113)
                      +-..+.||||.++..+||.||.. +.+|+||||.|.+.||+|+|||+..+         +|.|..|.+.+  ++|.+++ 
T Consensus       106 dptserWfHG~LsgkeAekLl~ekgk~gsfLvReSqs~PGdfVlSvrTdd~~~~~~~~~kVtHvmI~~q~--~kydVGg-  182 (600)
T KOG0790|consen  106 DPTSERWFHGHLSGKEAEKLLQEKGKHGSFLVRESQSHPGDFVLSVRTDDKKESNDSKLKVTHVMIRCQE--GKYDVGG-  182 (600)
T ss_pred             CchhhhhhccCCCchhHHHHHHhcCCCccEEEeccccCCCceEEEEEcCCcccCCCCccceEEEEEEecc--cccccCC-
Confidence            34456799999999999999954 79999999999999999999999754         79999999986  9999987 


Q ss_pred             CCCCCCHHHHHHHHhhCCcccCCCcceEecCcccc
Q psy12508         76 SAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIE  110 (113)
Q Consensus        76 ~~~F~sl~~lv~~y~~~~~~~~~~~~~~L~~pv~~  110 (113)
                      +..|.|+.+||+||+++++...++.-+.|..|.+.
T Consensus       183 ge~F~sltdLidhykknpmvEt~gtvv~LrqP~na  217 (600)
T KOG0790|consen  183 GERFDSLTDLVEHYKKNPMVETLGTVVYLRQPLNA  217 (600)
T ss_pred             ccccchHHHHHHHhccCchhhhcceeEEeeccccc
Confidence            68999999999999999998777777899999863

>KOG4278|consensus

Probab=99.85  E-value=4.2e-21  Score=142.72  Aligned_cols=103  Identities=33%  Similarity=0.541  Sum_probs=91.2

Q ss_pred             CCCCCCCCCCceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCC
Q psy12508          2 ANPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDS   81 (113)
Q Consensus         2 ~~~~~l~~~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~s   81 (113)
                      ++..+|+.+.||||.++|..||.+|..+-+|.||||.|++.+|+|+||++..+.|.||+|.... +|+.++.. ...|.+
T Consensus       144 tPvNSLeKhsWYHGpvSRsaaEy~LsSgInGSFLVRESEsSpgQ~sISlRyeGRVyHYRINt~~-dgK~yvt~-EsrF~T  221 (1157)
T KOG4278|consen  144 TPVNSLEKHSWYHGPVSRSAAEYILSSGINGSFLVRESESSPGQYSISLRYEGRVYHYRINTDN-DGKMYVTQ-ESRFRT  221 (1157)
T ss_pred             ccccchhhcccccCccccchhhhhhhcCcccceEEeeccCCCcceeEEEEecceEEEEEeeccC-CccEEEee-hhhhhH
Confidence            4567899999999999999999999989999999999999999999999999999999999887 67766665 479999


Q ss_pred             HHHHHHHHhhCCcccCCCcceEecCcccc
Q psy12508         82 VPEMIQHFAENRLPILGAEHMCLLHPMIE  110 (113)
Q Consensus        82 l~~lv~~y~~~~~~~~~~~~~~L~~pv~~  110 (113)
                      |.|||.||+.....    ..+.|.+|-++
T Consensus       222 LaELVHHHStvADG----LittLhYPApK  246 (1157)
T KOG4278|consen  222 LAELVHHHSTVADG----LITTLHYPAPK  246 (1157)
T ss_pred             HHHHHhhccccccc----eeEeeeccCcc
Confidence            99999999988764    44578888765

>KOG1264|consensus

Probab=99.84  E-value=4.5e-21  Score=144.40  Aligned_cols=101  Identities=32%  Similarity=0.681  Sum_probs=87.3

Q ss_pred             CCCCCCCCCceeecCCHHHHHHHhcC-CCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCC
Q psy12508          3 NPKPLDQRNWYHGSVTRHEAENILRN-SNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDS   81 (113)
Q Consensus         3 ~~~~l~~~~w~~g~i~r~~ae~lL~~-~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~s   81 (113)
                      ++.+.+++||||...+|++||++|.. ..+|+|||| +...++.|+||++..++++||+|.+.+  ..|.++.  ..|+|
T Consensus       641 qp~~He~k~W~~as~treqAE~mL~rvp~DGaFLiR-~~~~~nsy~iSfr~~gkikHcRi~rdG--r~fvl~t--~~Fes  715 (1267)
T KOG1264|consen  641 QPNPHESKPWYHASLTREQAEDMLMRVPRDGAFLIR-KREGSNSYAISFRARGKIKHCRINRDG--RHFVLGT--SAFES  715 (1267)
T ss_pred             CCCcccCCccccccccHHHHHHHHhhCccCcceEEE-eccCCceEEEEEEEcCcEeEEEEccCc--eEEEecc--HHHHH
Confidence            56789999999999999999999987 678999999 444468999999999999999999853  4566665  67999


Q ss_pred             HHHHHHHHhhCCcccCCCcceEecCcccccC
Q psy12508         82 VPEMIQHFAENRLPILGAEHMCLLHPMIEQL  112 (113)
Q Consensus        82 l~~lv~~y~~~~~~~~~~~~~~L~~pv~~~~  112 (113)
                      |.+||+||.++++.    .++.|.+||+.+.
T Consensus       716 Lv~lv~yY~k~~ly----R~mkLr~PVnee~  742 (1267)
T KOG1264|consen  716 LVELVSYYEKHPLY----RKMKLRYPVNEEL  742 (1267)
T ss_pred             HHHHHHHHhcChhh----hcccccCcCCHHH
Confidence            99999999999885    5778999998764

>KOG4792|consensus

Probab=99.83  E-value=2.8e-20  Score=122.93  Aligned_cols=102  Identities=27%  Similarity=0.568  Sum_probs=86.2

Q ss_pred             CCCCCCCCCceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCC------CCcEEECcCC
Q psy12508          3 NPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPD------TGKFILGQFS   76 (113)
Q Consensus         3 ~~~~l~~~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~------~~~~~~~~~~   76 (113)
                      .=++.+...||+|.|+|+||..+|...+.|.||||+|.+.+|+|+|||+.+.+|.||.|.....      ...+.+++  
T Consensus         4 ~FD~~er~swYfg~mSRqeA~~lL~~~r~G~FLvRDSst~pGdYvLsV~E~srVshYiIn~~~p~~~~~~~~~~rIgd--   81 (293)
T KOG4792|consen    4 NFDSSERSSWYFGPMSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSPPSPAQPPPSRLRIGD--   81 (293)
T ss_pred             ccChhhccceecCcccHHHHHHHhcCcceeeEEEecCCCCCCceEEEEecCcceeeeeecCCCCCccCCCcceeeecc--
Confidence            3467788899999999999999999888999999999999999999999999999999987321      12578876  


Q ss_pred             CCCCCHHHHHHHHhhCCcccCCCcceEecCccccc
Q psy12508         77 APFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQ  111 (113)
Q Consensus        77 ~~F~sl~~lv~~y~~~~~~~~~~~~~~L~~pv~~~  111 (113)
                      +.|++|+.|++||+-+-+.     .+.|..|.+|.
T Consensus        82 Q~Fd~lPaLL~fykihyLd-----tttLi~p~~r~  111 (293)
T KOG4792|consen   82 QEFDSLPALLEFYKIHYLD-----TTTLIEPAKRS  111 (293)
T ss_pred             ccccchHHHHhheeEeeec-----ccccccccccc
Confidence            8999999999999988773     44576776654

>KOG2996|consensus

Probab=99.77  E-value=3.5e-19  Score=130.60  Aligned_cols=102  Identities=26%  Similarity=0.495  Sum_probs=89.1

Q ss_pred             CCCCCCCceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCHHH
Q psy12508          5 KPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSVPE   84 (113)
Q Consensus         5 ~~l~~~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl~~   84 (113)
                      .++..+|||.|.|.|..||..|+..++|+||||.+....+.|+||++.++.|+|++|...+  |++.+.. ...|.|+.|
T Consensus       680 ~d~s~~~WyaG~MERaqaes~Lk~~~ngT~LVR~r~kea~e~AISikynnevKHikI~~~d--g~~~i~E-~k~F~sl~E  756 (865)
T KOG2996|consen  680 TDYSEFPWYAGEMERAQAESTLKNRPNGTYLVRYRTKEAKEFAISIKYNNEVKHIKIETND--GKVHITE-DKKFNSLVE  756 (865)
T ss_pred             cchhhhhhhcchHhhhhhhhHhhcCCCceEEEEecccchhheeEEEEeccccceEEEEecC--CeEEech-hhhhhhHHH
Confidence            4677889999999999999999999999999999988888999999999999999999875  9999987 589999999


Q ss_pred             HHHHHhhCCcccCC-CcceEecCccc
Q psy12508         85 MIQHFAENRLPILG-AEHMCLLHPMI  109 (113)
Q Consensus        85 lv~~y~~~~~~~~~-~~~~~L~~pv~  109 (113)
                      ||+||+.+++...- ...+.|+.|..
T Consensus       757 LVeyYq~~sLke~Fk~LDTtLk~Pyk  782 (865)
T KOG2996|consen  757 LVEYYQSHSLKEIFKALDTTLKFPYK  782 (865)
T ss_pred             HHHHHHhccHHHHHHHhhhhhcCCCc
Confidence            99999999985321 23467777765

>KOG1264|consensus

Probab=99.76  E-value=2.3e-18  Score=130.01  Aligned_cols=102  Identities=35%  Similarity=0.604  Sum_probs=86.5

Q ss_pred             CCCCceeecCC-HHHHHHHhcC------CCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCC--cEEECcCCCC
Q psy12508          8 DQRNWYHGSVT-RHEAENILRN------SNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTG--KFILGQFSAP   78 (113)
Q Consensus         8 ~~~~w~~g~i~-r~~ae~lL~~------~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~--~~~~~~~~~~   78 (113)
                      -.+.||||.+- |.+|+.+|+.      +++|+||||+|....|+|+||+...++|.|++|+...++|  +|++.+ ...
T Consensus       532 ~~E~WFHgkle~R~eAekll~eycke~G~~dGtFlVReS~tFvgDytLSfwr~grv~HcRIrsk~e~gt~Kyyl~d-N~v  610 (1267)
T KOG1264|consen  532 FGEKWFHGKLEGRTEAEKLLQEYCKETGGKDGTFLVRESETFVGDYTLSFWRSGRVQHCRIRSKMEGGTLKYYLTD-NLV  610 (1267)
T ss_pred             cchhhhhcccccchHHHHHHHHHHHHhCCCCccEEEeeccccccceeeeeeECCceeeEEEEeeecCCceeEEEec-chh
Confidence            35689999998 9999999863      3799999999999999999999999999999998755334  677766 379


Q ss_pred             CCCHHHHHHHHhhCCcccCCCc-ceEecCcccccC
Q psy12508         79 FDSVPEMIQHFAENRLPILGAE-HMCLLHPMIEQL  112 (113)
Q Consensus        79 F~sl~~lv~~y~~~~~~~~~~~-~~~L~~pv~~~~  112 (113)
                      |.||.+||.||.++.+-  +++ .+.|+-||+.+.
T Consensus       611 fdslY~LI~~Y~~~~Lr--~aeF~m~LtePvPqp~  643 (1267)
T KOG1264|consen  611 FDSLYALIQHYRETHLR--CAEFEMRLTEPVPQPN  643 (1267)
T ss_pred             HHHHHHHHHHHHhcccc--ccceEEEecCCCCCCC
Confidence            99999999999999764  334 689999998753

>KOG0197|consensus

Probab=99.74  E-value=1e-17  Score=121.48  Aligned_cols=100  Identities=29%  Similarity=0.519  Sum_probs=82.4

Q ss_pred             CCCCCCCCceeecCCHHHHHHHhcC--CCCceEEEEecCCCCCcEEEEEEeCC------eeEEEEEEecCCCCcEE--EC
Q psy12508          4 PKPLDQRNWYHGSVTRHEAENILRN--SNEGSYLVRNSESNRPDYSLSLKSAR------GFMHMKIQRDPDTGKFI--LG   73 (113)
Q Consensus         4 ~~~l~~~~w~~g~i~r~~ae~lL~~--~~~G~FLvR~s~~~~~~~~Lsv~~~~------~v~h~~I~~~~~~~~~~--~~   73 (113)
                      ..+++.+|||+|.|+|.+||+.|..  +..|+||||+|++.+|.|+|||+...      .|+|++|...+ +|.+.  +.
T Consensus        75 ~~~l~~~~Wf~~~isR~~ae~~ll~p~~~~G~flvR~se~~~g~yslsv~~~~~~~~~~~v~hyri~~~~-~~~~~~~~~  153 (468)
T KOG0197|consen   75 FIKLSDEPWFFGKISREEAERQLLAPENKEGAFLVRESESDKGDYSLSVREGDSGGLGAKVKHYRIRQLD-GGGLYPYID  153 (468)
T ss_pred             ccccccCCchhccccHHHHHHhhcCCCCCccceeeecccCCcCCeeEEEEeccccCCccceeeeeeeEcC-CCCeecCCC
Confidence            3789999999999999999975544  56699999999999999999999765      79999999987 45455  55


Q ss_pred             cCCCCCCCHHHHHHHHhhCCcccCCCcceEecCccc
Q psy12508         74 QFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMI  109 (113)
Q Consensus        74 ~~~~~F~sl~~lv~~y~~~~~~~~~~~~~~L~~pv~  109 (113)
                      . ...|+++.+||+||+.+...+..    .|..|+.
T Consensus       154 ~-~~~F~~l~~lv~~~~~~~~gl~~----~l~~p~~  184 (468)
T KOG0197|consen  154 E-RELFSSLQQLVNYYSKNADGLCT----RLRDPCS  184 (468)
T ss_pred             H-HHhhhhHHHHHhhhhccCcchhh----cccCchh
Confidence            5 47899999999999999886443    4555554

>KOG0194|consensus

Probab=99.73  E-value=3.3e-17  Score=119.69  Aligned_cols=101  Identities=30%  Similarity=0.563  Sum_probs=84.1

Q ss_pred             CCCCCCceeecCCHHHHHHHhcCCCCceEEEEecCCCCC---cE-EEEEEeC--CeeEEEEEEecCCCCcEEECcCCCCC
Q psy12508          6 PLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRP---DY-SLSLKSA--RGFMHMKIQRDPDTGKFILGQFSAPF   79 (113)
Q Consensus         6 ~l~~~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~---~~-~Lsv~~~--~~v~h~~I~~~~~~~~~~~~~~~~~F   79 (113)
                      .+..++||||.+.|++++.+|+  .+|+||||.|...++   .+ +||+.+.  ..++||.|...+  +.++... ...|
T Consensus        45 ~~~~~~~yHG~l~red~~~lL~--~~GDfLvR~s~~~~~~~~~~~vlSv~~~~~~~~~h~vi~~~~--~~~~~~~-~~~F  119 (474)
T KOG0194|consen   45 DLRELPYYHGLLPREDAEKLLK--NDGDFLVRASEPKEGEKREFVVLSVKWSVFKKIKHYVIKRNG--NLFFFEG-LRKF  119 (474)
T ss_pred             HhhcCccccccccHhHHHHHhC--CCCceEEEeecccCCcceeEEEEEEEeecCCceeEEEEEEcC--CeeEEec-cccC
Confidence            4556899999999999999999  699999999987654   34 8999985  778999999986  4444444 4899


Q ss_pred             CCHHHHHHHHhhCCcccCCCcceEecCcccccC
Q psy12508         80 DSVPEMIQHFAENRLPILGAEHMCLLHPMIEQL  112 (113)
Q Consensus        80 ~sl~~lv~~y~~~~~~~~~~~~~~L~~pv~~~~  112 (113)
                      +++.+||.||..+..++.+. .+.|+.||+++.
T Consensus       120 ~si~~li~~~~~~~~~~~~~-~~~L~~PI~r~~  151 (474)
T KOG0194|consen  120 PTISELVNYYKFSKLEITGK-NFFLKRPIPRQK  151 (474)
T ss_pred             CcHHHHHHHHHhcccceecc-ceeecccccccc
Confidence            99999999999999987763 458999999875

>KOG4637|consensus

Probab=99.68  E-value=6e-17  Score=113.44  Aligned_cols=99  Identities=25%  Similarity=0.432  Sum_probs=82.6

Q ss_pred             CCceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCHHHHHHHH
Q psy12508         10 RNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSVPEMIQHF   89 (113)
Q Consensus        10 ~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl~~lv~~y   89 (113)
                      .-|+.+.+.|..||.+|+..++|+||||.|.. .|+|++||...+.|+||.|..+. .| |.+......+.||.+||.||
T Consensus       332 ~~w~~~~a~r~kAe~llrg~~dGtFLIR~ss~-~g~yalSV~~~~~V~HClIy~ta-tG-~GFa~pyn~y~tlk~lV~hY  408 (464)
T KOG4637|consen  332 KTWRVRDANRDKAEELLRGKPDGTFLIRESSK-GGCYALSVVHDGEVKHCLIYQTA-TG-FGFAEPYNLYSTLKELVLHY  408 (464)
T ss_pred             hHhHHhhhhHHHHHHHhcCCCCCeEEEeeccC-CCceEEEEEECCceeeeEEeecc-cc-ccccchhHHHHHHHHHHHHH
Confidence            36999999999999999999999999999644 58999999999999999999987 44 44444456799999999999


Q ss_pred             hhCCcccCC-CcceEecCccccc
Q psy12508         90 AENRLPILG-AEHMCLLHPMIEQ  111 (113)
Q Consensus        90 ~~~~~~~~~-~~~~~L~~pv~~~  111 (113)
                      +..++...+ +..+.|..||--+
T Consensus       409 ~h~SLe~HnDal~ttLr~Pv~~~  431 (464)
T KOG4637|consen  409 QHTSLEQHNDALTTTLRYPVFAQ  431 (464)
T ss_pred             hhhhHHhhccccccccccceecc
Confidence            999885443 3468888887544

>KOG0790|consensus

Probab=99.64  E-value=6.3e-16  Score=110.84  Aligned_cols=98  Identities=31%  Similarity=0.519  Sum_probs=85.7

Q ss_pred             CCCceeecCCHHHHHHHhcC-CCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCHHHHHH
Q psy12508          9 QRNWYHGSVTRHEAENILRN-SNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSVPEMIQ   87 (113)
Q Consensus         9 ~~~w~~g~i~r~~ae~lL~~-~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl~~lv~   87 (113)
                      ...|||..++..+||.||+. +.+|+||.|.|.++++.|+|+++.++++.|++|...+  +.|.+.+ +..|.+++|||+
T Consensus         3 s~~wfh~~~~g~~ae~Ll~~~g~dgsfl~r~s~sNp~~fsl~~r~~~~v~hikiq~~~--~~~~l~~-gekfat~~ELvq   79 (600)
T KOG0790|consen    3 SRRWFHPDLSGVEAETLLKERGVDGSFLARPSESNPGDFSLSVRRGDKVTHIKIQNSG--DFYDLYG-GEKFATLAELVQ   79 (600)
T ss_pred             chhhcCCCccchhHHHHHHHhccccchhhccccCCCcceeEEEEeCCceEEEEEeecC--ccccccC-CccccchHHHHH
Confidence            46799999999999999986 7999999999999999999999999999999998765  5677776 689999999999


Q ss_pred             HHhhCCcccC--CCcceEecCccc
Q psy12508         88 HFAENRLPIL--GAEHMCLLHPMI  109 (113)
Q Consensus        88 ~y~~~~~~~~--~~~~~~L~~pv~  109 (113)
                      ||+.+...+.  ++.-+.|++|++
T Consensus        80 yyme~~~~lkekng~~ielK~pl~  103 (600)
T KOG0790|consen   80 YYMEHHGQLKEKNGDVIELKYPLN  103 (600)
T ss_pred             HHHhhhHHHHhcCCCEEEecCCCc
Confidence            9999885554  334588999875

>KOG1930|consensus

Probab=99.55  E-value=6.8e-15  Score=104.50  Aligned_cols=89  Identities=27%  Similarity=0.480  Sum_probs=74.1

Q ss_pred             CCCceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEe----------C-----CeeEEEEEEecCCCC-cEEE
Q psy12508          9 QRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKS----------A-----RGFMHMKIQRDPDTG-KFIL   72 (113)
Q Consensus         9 ~~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~----------~-----~~v~h~~I~~~~~~~-~~~~   72 (113)
                      ..=||..+|+|++|..||++.++|+||||+|.+.+|.|-|.++.          +     .-|+||.|+... .| +..-
T Consensus       211 SKyWYKP~isREQAIalLrdkePGtFvvRDS~SfrGayGLAlKVstPPPs~~~~~g~~~neLVRHFLIE~sp-kGVkLKG  289 (483)
T KOG1930|consen  211 SKYWYKPNISREQAIALLRDKEPGTFVVRDSHSFRGAYGLALKVSTPPPSVQPGDGSDSNELVRHFLIEPSP-KGVKLKG  289 (483)
T ss_pred             cccccCCCCCHHHHHHHhhcCCCCeEEEecCCcCCCccceEEEeccCCCcccCCCCCchhhhhhhheeccCC-CceeccC
Confidence            44699999999999999999999999999999999999999984          1     238999999876 33 2322


Q ss_pred             CcCCCCCCCHHHHHHHHhhCCcccCC
Q psy12508         73 GQFSAPFDSVPEMIQHFAENRLPILG   98 (113)
Q Consensus        73 ~~~~~~F~sl~~lv~~y~~~~~~~~~   98 (113)
                      ..+...|.||..||--|+-.++.|.+
T Consensus       290 C~nEP~FGSLSALV~QHSIt~LALPc  315 (483)
T KOG1930|consen  290 CDNEPVFGSLSALVYQHSITALALPC  315 (483)
T ss_pred             CCCCCccchhHHHHhhccchhhhcce
Confidence            33458999999999999998887766

>KOG3601|consensus

Probab=99.49  E-value=2.7e-15  Score=98.28  Aligned_cols=87  Identities=28%  Similarity=0.511  Sum_probs=78.9

Q ss_pred             CCCCCCceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCHHHH
Q psy12508          6 PLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSVPEM   85 (113)
Q Consensus         6 ~l~~~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl~~l   85 (113)
                      ....++||+|.++|..||++|....+|+||+|.+.+.+|.|.++++....|+|+++.+.. .++|++..  ..|+++.++
T Consensus        54 ~~~~~~wve~~i~r~~ae~~l~~~~~G~fl~r~s~sSPg~fsgsvr~~d~vqhfkvvrpa-~~k~~lw~--skfnslnpl  130 (222)
T KOG3601|consen   54 RMKPHEWVEGLIPRPLAEDLLSKKRDGDFLIRLSESSPGDFSGSVRFPDGVQHFKVVRPA-FGKYFLWS--SKFNSLNPL  130 (222)
T ss_pred             ccccccceecccccchhhhhhhccCcchhhhhhhhcCcccccccccCCCCceeccccccC-ccccccch--hhccCCCCC
Confidence            445789999999999999999888999999999999999999999999999999999876 68899886  699999999


Q ss_pred             HHHHhhCCcc
Q psy12508         86 IQHFAENRLP   95 (113)
Q Consensus        86 v~~y~~~~~~   95 (113)
                      ++||..+...
T Consensus       131 v~Y~rt~s~~  140 (222)
T KOG3601|consen  131 VSYHRTASQS  140 (222)
T ss_pred             cccCcccccc
Confidence            9999877653

>KOG3697|consensus

Probab=99.07  E-value=2.4e-10  Score=78.32  Aligned_cols=99  Identities=18%  Similarity=0.276  Sum_probs=81.1

Q ss_pred             CCCCCceeecCCHHHHHHHhcCCCCceEEEEecC----------------------------------------------
Q psy12508          7 LDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSE----------------------------------------------   40 (113)
Q Consensus         7 l~~~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~----------------------------------------------   40 (113)
                      ....|||+|.++++.++..|+  ++|.|++|.+.                                              
T Consensus       198 p~k~pp~~g~l~~~~~q~~l~--~~a~~~a~~~~~~p~~~~ls~l~~~n~ppp~~p~~kl~~~~~~~n~~~~~~rd~~~~  275 (345)
T KOG3697|consen  198 PSKMPPPGGFLDTRLKQRPLA--PDAAQFAGKEQTYPQGRHLSDLRQGNSPPPSTPEGKLHVAPTYVNTQQIPRRDLFDE  275 (345)
T ss_pred             cccCCCCCCccchhhhhccCC--cccchhhhhccCCcccccccchhhcCCCCCCCCCccCCCCcccccccccchhhhccc
Confidence            446799999999999999998  88999988643                                              


Q ss_pred             -CCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCHHHHHHHHhhCCcccCCCc-ceEecCccccc
Q psy12508         41 -SNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAE-HMCLLHPMIEQ  111 (113)
Q Consensus        41 -~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl~~lv~~y~~~~~~~~~~~-~~~L~~pv~~~  111 (113)
                       ..+|+|+|+-...+.-+|..+.--  +|.....  ...|+|+.-||.||+.+.+++..+. .+.|.+||.|+
T Consensus       276 ~~~~gqyvltgl~~~~~khlllvdp--egvvrtk--d~~fdsishli~yh~~~~lpiis~~sel~l~~pv~r~  344 (345)
T KOG3697|consen  276 TTTPGQYVLTGLQSGQPKHLLLVDP--EGVVRTK--DRRFDSISHLINYHMDNHLPIISAGSELCLQQPVERK  344 (345)
T ss_pred             cCCCccEEEecccCCCcceEEEECC--ccceecc--cchhhHHHHHHHHhhhccCceecCcchhhhhCccccc
Confidence             346788888888888999887643  3655554  4899999999999999999987544 58999999875

>KOG3751|consensus

Probab=98.94  E-value=3.5e-10  Score=82.90  Aligned_cols=92  Identities=25%  Similarity=0.497  Sum_probs=76.2

Q ss_pred             CCCCCceeecCCHHHHHHHhcCC--CCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCc--EEECcCCCCCCCH
Q psy12508          7 LDQRNWYHGSVTRHEAENILRNS--NEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGK--FILGQFSAPFDSV   82 (113)
Q Consensus         7 l~~~~w~~g~i~r~~ae~lL~~~--~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~--~~~~~~~~~F~sl   82 (113)
                      ...+.||||.|+|+++.+++++.  -+|.|++|.|.++|..|++++....+++||+|...+++|.  +.+......|.++
T Consensus       516 h~sq~~~~~kis~~es~~~ikq~glv~~~~l~r~sqsnP~~~~~~~~~~~~v~~~~~~P~~~~~~~~~t~~~g~t~~sd~  595 (622)
T KOG3751|consen  516 HRSQTWFHGKISRDESQRLIKQQGLVDGLFLVRDSQSNPKIFVLSLCHPQKVKHFQILPVEDDGCTFFTLDDGPTKFSDL  595 (622)
T ss_pred             cccccCcccccCchhhhhHHHhcccceeeeeecccccCcchhhhhccCCccccceEEecCCCCCceeeccCCCCcccccc
Confidence            45679999999999999988863  7799999999999999999999999999999998765553  3334334789999


Q ss_pred             HHHHHHHhhCCcccCC
Q psy12508         83 PEMIQHFAENRLPILG   98 (113)
Q Consensus        83 ~~lv~~y~~~~~~~~~   98 (113)
                      ..|+++|+-++-++.+
T Consensus       596 ~ql~~~~ql~k~~l~~  611 (622)
T KOG3751|consen  596 IQLVEFYQLNKGVLPC  611 (622)
T ss_pred             ccccchhhcCCCcchH
Confidence            9999999887655443

>PF14633 SH2_2: SH2 domain; PDB: 3GXX_A 3GXW_B 3PJP_B 2XP1_A

Probab=98.79  E-value=5.1e-08  Score=65.48  Aligned_cols=79  Identities=14%  Similarity=0.373  Sum_probs=60.0

Q ss_pred             CCCceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEe-CCeeEEEEEEecCCCC------cEEECcCCCCCCC
Q psy12508          9 QRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKS-ARGFMHMKIQRDPDTG------KFILGQFSAPFDS   81 (113)
Q Consensus         9 ~~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~-~~~v~h~~I~~~~~~~------~~~~~~~~~~F~s   81 (113)
                      .+|-|+ +++-.+|++.|.+.+.|.+|||+|.......+++++. .+..+|+.|.-.+..+      .+.+++  ..|.+
T Consensus        37 ~HP~F~-n~~~~qAe~~L~~~~~Ge~iIRPSSkG~dhL~vTwKv~d~vyqHidV~E~~K~n~~slG~~L~i~~--~~yeD  113 (220)
T PF14633_consen   37 KHPLFK-NFNYKQAEEYLADQDVGEVIIRPSSKGPDHLTVTWKVADGVYQHIDVKEEDKENEFSLGKTLKIGG--EEYED  113 (220)
T ss_dssp             CSTTEE-SS-HHHHHHHHCCS-TT-EEEEE-TTTTTEEEEEEEEETTEEEEEEEEEECSSSTTS-SSEEEETT--EEESS
T ss_pred             cCCCcc-CCCHHHHHHHHhcCCCCCEEEeeCCCCCCeEEEEEEEcCCcEEEEEEEECCCcCccccCcEEEECC--eEECC
Confidence            458888 9999999999998888999999999877788999996 4557899997654222      355554  79999


Q ss_pred             HHHHHHHHh
Q psy12508         82 VPEMIQHFA   90 (113)
Q Consensus        82 l~~lv~~y~   90 (113)
                      |.|||.-|.
T Consensus       114 LDEii~r~V  122 (220)
T PF14633_consen  114 LDEIIARHV  122 (220)
T ss_dssp             HHHHHHHCH
T ss_pred             HHHHHHHHH
Confidence            999998874

>KOG4566|consensus

Probab=98.23  E-value=3.6e-06  Score=57.75  Aligned_cols=87  Identities=30%  Similarity=0.462  Sum_probs=67.4

Q ss_pred             CCCCCCceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECc-----CC-CCC
Q psy12508          6 PLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQ-----FS-APF   79 (113)
Q Consensus         6 ~l~~~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~-----~~-~~F   79 (113)
                      .+...+||||.+++++|+..|...+.|+|+||+|...+--+.|+++...+-+..+|...+  +.+....     .. ..|
T Consensus        48 ~~~~~g~~w~~~~~~~~~~~l~~~p~~~~l~Rdss~~~~~~~I~vk~~~g~~~~r~~~~~--~sfr~ds~~~~~~pl~~~  125 (258)
T KOG4566|consen   48 LLDSSGHYWGLETANEAELCLGQEPRGTFLVRDSSHRPYLFTISVKTHSGPKNLRIQYQD--SSFRLDSSHRHTPPLISF  125 (258)
T ss_pred             ccccCCcccccccchhHHHhhcCCCccceeeecCcCccccceeEeeeccCCCCccccccc--cceecccccccCCCcccC
Confidence            345668999999999999888888999999999998777789999987776666776553  4444311     12 479


Q ss_pred             CCHHHHHHHHhhCCc
Q psy12508         80 DSVPEMIQHFAENRL   94 (113)
Q Consensus        80 ~sl~~lv~~y~~~~~   94 (113)
                      +.+..++.+|+....
T Consensus       126 e~~~~~~~~y~~~~~  140 (258)
T KOG4566|consen  126 EDVEVLIHHYRQSRK  140 (258)
T ss_pred             hhHHHHHHhhhhhhh
Confidence            999999999965443

>KOG1856|consensus

Probab=97.88  E-value=3.2e-05  Score=61.85  Aligned_cols=83  Identities=18%  Similarity=0.367  Sum_probs=64.4

Q ss_pred             CCCCceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEeC-CeeEEEEEEecCCCCcEEECc----CCCCCCCH
Q psy12508          8 DQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSA-RGFMHMKIQRDPDTGKFILGQ----FSAPFDSV   82 (113)
Q Consensus         8 ~~~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~-~~v~h~~I~~~~~~~~~~~~~----~~~~F~sl   82 (113)
                      -.+|.|+ +++-++|+.+|.+...|.++||+|.......+++.+.. +..+|+.|.-.+..+.|.++.    .+..|..|
T Consensus      1106 I~HP~F~-n~n~eQAe~yL~~~d~ge~iiRpSSrgddhLvvtwKVsD~iYqhidV~E~eKEn~fslg~~l~i~~e~feDL 1184 (1299)
T KOG1856|consen 1106 IAHPLFK-NLNAEQAEAYLSDMDQGELIIRPSSRGDDHLVVTWKVSDGIYQHIDVQELEKENYFSLGKTLWIGGEEFEDL 1184 (1299)
T ss_pred             hcCcccc-CCCHHHHHHHHHhcccccEEeccccCCCCceEEEEEecCchhhhhhhhhhhccccccccceEEECCcccccH
Confidence            3578998 99999999999988899999999998777888888865 456788886543233333332    23799999


Q ss_pred             HHHHHHHhh
Q psy12508         83 PEMIQHFAE   91 (113)
Q Consensus        83 ~~lv~~y~~   91 (113)
                      .|+|.-|.+
T Consensus      1185 DEiI~r~vq 1193 (1299)
T KOG1856|consen 1185 DEIIARYVQ 1193 (1299)
T ss_pred             HHHHHHHHH
Confidence            999987754

>PF14633 SH2_2: SH2 domain; PDB: 3GXX_A 3GXW_B 3PJP_B 2XP1_A

Probab=96.98  E-value=0.0027  Score=42.94  Aligned_cols=79  Identities=22%  Similarity=0.329  Sum_probs=52.9

Q ss_pred             CCCceeecCCHHHHHHHhcC----CC-CceEEEEecCCCCCcEEEEEEeCCeeEEEE--EEecCCCCcEEECcCCCCCCC
Q psy12508          9 QRNWYHGSVTRHEAENILRN----SN-EGSYLVRNSESNRPDYSLSLKSARGFMHMK--IQRDPDTGKFILGQFSAPFDS   81 (113)
Q Consensus         9 ~~~w~~g~i~r~~ae~lL~~----~~-~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~--I~~~~~~~~~~~~~~~~~F~s   81 (113)
                      .++.|.. -+++++++.|..    .+ --.|.+..+...||.|.|+...+...+|..  |...+ +| |.+.+  ..|++
T Consensus       134 ~h~kf~~-g~~~e~e~~L~~~k~~nP~~i~Y~f~~~~~~PG~F~L~y~~~~~~~~~~~~v~V~p-~G-f~~r~--~~f~~  208 (220)
T PF14633_consen  134 NHRKFKD-GTKEEVEEWLKEEKKANPKRIPYAFCISKEHPGYFILSYKPNKNPRHEYWPVKVTP-DG-FRFRK--QVFPS  208 (220)
T ss_dssp             CSTTEES-S-CCCCHHHHHCHHHHSTTS-EEEEEE-TTSTTEEEEEEESSTTS-EEEEEEEE-S-SS-EEETT--EEESS
T ss_pred             hCccccC-CCHHHHHHHHHHHHHhCCCCceEEEEECCCCCCEEEEEEEcCCCCceEEeeEEEec-Cc-EEEec--ccCCC
Confidence            4556653 467777887864    22 256888888888999999999765544433  66665 34 55654  79999


Q ss_pred             HHHHHHHHhhC
Q psy12508         82 VPEMIQHFAEN   92 (113)
Q Consensus        82 l~~lv~~y~~~   92 (113)
                      |.+|+.+++.+
T Consensus       209 ~~~L~~~FK~~  219 (220)
T PF14633_consen  209 LDRLINWFKKH  219 (220)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhhc
Confidence            99999998764

>PF02762 Cbl_N3: CBL proto-oncogene N-terminus, SH2-like domain; InterPro: IPR014742 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface

Probab=96.05  E-value=0.05  Score=30.71  Aligned_cols=45  Identities=20%  Similarity=0.294  Sum_probs=36.2

Q ss_pred             CCceeecCCHHHHHHHhcC--CCCceEEEEecCCCCCcEEEEEEeCC
Q psy12508         10 RNWYHGSVTRHEAENILRN--SNEGSYLVRNSESNRPDYSLSLKSAR   54 (113)
Q Consensus        10 ~~w~~g~i~r~~ae~lL~~--~~~G~FLvR~s~~~~~~~~Lsv~~~~   54 (113)
                      +|-|...++=+|+...|+.  ..+|+|+.|-|....|++++-....+
T Consensus         2 HpgY~AFlTYdevk~~L~~~~~kpGsYiFRlSCTrLGQWAIGyV~~d   48 (86)
T PF02762_consen    2 HPGYMAFLTYDEVKARLQHYRDKPGSYIFRLSCTRLGQWAIGYVTQD   48 (86)
T ss_dssp             -TTBETT--HHHHHHHHGGGTTSTTEEEEEEESSSTTSEEEEEEETT
T ss_pred             CCceeEEEeHHHHHHHHHHHhCCcccEEEeeccccccceeEEEEcCC
Confidence            4667888999999999975  58899999999999999999887653

The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the SH2-like domain.; PDB: 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B 3BUW_B ....

>KOG1856|consensus

Probab=95.23  E-value=0.075  Score=43.54  Aligned_cols=83  Identities=20%  Similarity=0.383  Sum_probs=61.2

Q ss_pred             CCCCCceeecCCHHHHHHHhcC--CCCce---EEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCC
Q psy12508          7 LDQRNWYHGSVTRHEAENILRN--SNEGS---YLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDS   81 (113)
Q Consensus         7 l~~~~w~~g~i~r~~ae~lL~~--~~~G~---FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~s   81 (113)
                      +..+.+|. .=++.+.|++|..  ..++.   |...-|...||.|.|+.+...+++|=-|...+ .| |.+.+  +.|+|
T Consensus      1202 m~nhkyf~-~Gt~~~~ek~L~~~k~~np~~~~Y~F~~s~~~PG~F~L~y~~~~k~~heyv~v~p-~g-~~~rg--~~f~t 1276 (1299)
T KOG1856|consen 1202 MTNHKYFF-TGTKKEVEKLLRDYKKVNPKKSVYFFCASHEHPGKFCLSYKPSSKPRHEYVKVVP-EG-FRFRG--QNFGT 1276 (1299)
T ss_pred             HHhhhHhh-cCCHHHHHHHHHHHhccCCCeeeEEEEecccCCceEEEEeccCCCccceeEEEcc-cc-eEEec--ccchh
Confidence            34456666 3358889998874  34444   44456667799999999999888888877776 45 44444  79999


Q ss_pred             HHHHHHHHhhCCc
Q psy12508         82 VPEMIQHFAENRL   94 (113)
Q Consensus        82 l~~lv~~y~~~~~   94 (113)
                      |.+|+.+++.+-.
T Consensus      1277 ld~L~~~FK~h~~ 1289 (1299)
T KOG1856|consen 1277 LDELCRWFKRHYK 1289 (1299)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988754

>KOG3667|consensus

Probab=90.81  E-value=0.64  Score=36.35  Aligned_cols=52  Identities=17%  Similarity=0.304  Sum_probs=39.8

Q ss_pred             CceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEeCCe-eEEEEEE
Q psy12508         11 NWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARG-FMHMKIQ   62 (113)
Q Consensus        11 ~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~-v~h~~I~   62 (113)
                      -...|.+++..+..+|...++|+|++|.|++..|..+++-....+ ..|+.|.
T Consensus       564 g~Imgfinkq~~~~ll~~~~~GtflLrfs~S~~GgiT~~~v~~~~~~~~~~i~  616 (682)
T KOG3667|consen  564 GVIMGFINKQQERALLMTKPDGTFLLRFSASEEGGITIAWVEDQKQNLIMMIM  616 (682)
T ss_pred             ceeeeecchhhhhhhhhcCCCCCceeeeeccccCceeEEecccccccceeEec
Confidence            445789999999999988899999999999887776655553322 3567776

>smart00557 IG_FLMN Filamin-type immunoglobulin domains

Probab=87.41  E-value=1.2  Score=25.77  Aligned_cols=29  Identities=21%  Similarity=0.511  Sum_probs=23.4

Q ss_pred             cCCCCceEEEEecCCCCCcEEEEEEeCCe
Q psy12508         27 RNSNEGSYLVRNSESNRPDYSLSLKSARG   55 (113)
Q Consensus        27 ~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~   55 (113)
                      .+..+|+|.+.-.+...|.|.|+++.++.
T Consensus        51 ~d~~dGty~v~y~P~~~G~~~i~V~~~g~   79 (93)
T smart00557       51 KDNGDGTYTVSYTPTEPGDYTVTVKFGGE   79 (93)
T ss_pred             EeCCCCEEEEEEEeCCCEeEEEEEEECCE
Confidence            45678999999888888889998887653

These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).

>KOG1785|consensus

Probab=82.36  E-value=3.1  Score=30.92  Aligned_cols=45  Identities=22%  Similarity=0.307  Sum_probs=37.8

Q ss_pred             CCceeecCCHHHHHHHhcC--CCCceEEEEecCCCCCcEEEEEEeCC
Q psy12508         10 RNWYHGSVTRHEAENILRN--SNEGSYLVRNSESNRPDYSLSLKSAR   54 (113)
Q Consensus        10 ~~w~~g~i~r~~ae~lL~~--~~~G~FLvR~s~~~~~~~~Lsv~~~~   54 (113)
                      +|=|...++=+|+...|+.  ..+|+|+.|.|....|+++|-....+
T Consensus       256 HPGYmAFLTYDEVk~RLqk~~~KpGSYIFRlSCTRlGQWAIGYVt~d  302 (563)
T KOG1785|consen  256 HPGYMAFLTYDEVKARLQKYIKKPGSYIFRLSCTRLGQWAIGYVTAD  302 (563)
T ss_pred             CCceeEEeeHHHHHHHHHHHhcCCCceEEeeccCcccceeEEEEcCC
Confidence            4667788898998888865  58999999999999999999888643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	113
1z3k_A	98	Structural Insight Into The Binding Diversity Betwe		2e-11
2cia_A	102	Human Nck2 Sh2-Domain In Complex With A Decaphospho		8e-11
2ci8_A	99	Sh2 Domain Of Human Nck1 Adaptor Protein - Uncomple		3e-10
2ci9_A	102	Nck1 Sh2-Domain In Complex With A Dodecaphosphopept		4e-10
2kk6_A	116	Solution Structure Of Sh2 Domain Of Proto-Oncogene		1e-08
2eob_A	124	Solution Structure Of The Second Sh2 Domain From Ra		3e-08
3tl0_A	109	Structure Of Shp2 N-Sh2 Domain In Complex With Rlnp		3e-08
1aya_A	101	Crystal Structures Of Peptide Complexes Of The Amin		4e-08
1opk_A	495	Structural Basis For The Auto-Inhibition Of C-Abl T		7e-08
1opl_A	537	Structural Basis For The Auto-Inhibition Of C-Abl T		7e-08
2fo0_A	495	Organization Of The Sh3-Sh2 Unit In Active And Inac		7e-08
3k2m_A	112	Crystal Structure Of Monobody Ha4ABL1 SH2 DOMAIN CO		7e-08
3t04_A	123	Crystal Structure Of Monobody 7c12ABL1 SH2 DOMAIN C		8e-08
2ecd_A	119	Solution Structure Of The Human Abl2 Sh2 Domain Len		8e-08
2abl_A	163	Sh3-Sh2 Domain Fragment Of Human Bcr-Abl Tyrosine K		9e-08
2shp_A	525	Tyrosine Phosphatase Shp-2 Length = 525		9e-08
1ab2_A	109	Three-Dimensional Solution Structure Of The Src Hom		1e-07
1r1p_A	100	Structural Basis For Differential Recognition Of Ty		1e-07
1ghu_A	107	Nmr Solution Structure Of Growth Factor Receptor-Bo		2e-07
1fhs_A	112	The Three-Dimensional Solution Structure Of The Src		2e-07
3ove_A	117	Crystal Structure Of The Grb2 Sh2 Domain In Complex		2e-07
3imd_A	117	Crystal Structure Of The Grb2 Sh2 Domain In Complex		2e-07
3n84_A	112	Crystal Structure Of The Grb2 Sh2 Domain In Complex		2e-07
1bmb_A	123	Grb2-Sh2 Domain In Complex With KpfyVnvef (Pkf270-9		2e-07
1jyq_A	96	Xray Structure Of Grb2 Sh2 Domain Complexed With A		2e-07
2h46_E	116	Native Domain-Swapped Dimer Crystal Structure Of Th		2e-07
1a1a_A	107	C-Src (Sh2 Domain With C188a Mutation) Complexed Wi		2e-07
1fu5_A	111	Nmr Structure Of The N-Sh2 Domain Of The P85 Subuni		2e-07
2aoa_A	99	Crystal Structures Of A High-affinity Macrocyclic P		2e-07
1bm2_A	117	Grb2-Sh2 Domain In Complex With Cyclo-[n-Alpha-Acet		2e-07
1gri_A	217	Grb2 Length = 217		2e-07
1tze_E	98	Signal Transduction Adaptor Growth Factor, Grb2 Sh2		2e-07
1fyr_A	114	Dimer Formation Through Domain Swapping In The Crys		2e-07
1oo3_A	111	P395s Mutant Of The P85 Regulatory Subunit Of The N		2e-07
1x0n_A	104	Nmr Structure Of Growth Factor Receptor Binding Pro		2e-07
1zfp_E	98	Growth Factor Receptor Binding Protein Sh2 Domain C		2e-07
1cj1_A	96	Growth Factor Receptor Binding Protein Sh2 Domain (		2e-07
3mxc_A	101	Structures Of Grb2-Sh2 Domain And Aicd Peptide Comp		2e-07
2iug_A	120	Crystal Structure Of The Pi3-Kinase P85 N-Terminal		4e-07
1o41_A	108	Crystal Structure Of Sh2 In Complex With Ru78300. L		4e-07
1shd_A	107	Peptide Inhibitors Of Src Sh3-Sh2-Phosphoprotein In		4e-07
2rd0_B	279	Structure Of A Human P110alpha/p85alpha Complex Len		5e-07
2vif_A	141	Crystal Structure Of Socs6 Sh2 Domain In Complex Wi		5e-07
1o4c_A	108	Crystal Structure Of Sh2 In Complex With Phosphate.		5e-07
2c9w_A	169	Crystal Structure Of Socs-2 In Complex With Elongin		7e-07
1kc2_A	103	Structure Of The Triple (Lys(Beta)d3ala, Asp(Beta)c		1e-06
2pna_A	104	Structure Of An Sh2 Domain Of The P85 Alpha Subunit		1e-06
3hhm_B	373	Crystal Structure Of P110alpha H1047r Mutant In Com		1e-06
4ey0_A	246	Structure Of Tandem Sh2 Domains From Plcgamma1 Leng		1e-06
3gqi_B	226	Crystal Structure Of Activated Receptor Tyrosine Ki		1e-06
4fbn_A	246	Insights Into Structural Integration Of The Plcgamm		1e-06
1y57_A	452	Structure Of Unphosphorylated C-Src In Complex With		2e-06
1ksw_A	452	Structure Of Human C-Src Tyrosine Kinase (Thr338gly		2e-06
1fmk_A	452	Crystal Structure Of Human Tyrosine-Protein Kinase		2e-06
1bkl_A	113	Self-Associated Apo Src Sh2 Domain Length = 113		2e-06
3uf4_A	164	Crystal Structure Of A Sh3 And Sh2 Domains Of Fyn P		2e-06
2fci_A	105	Structural Basis For The Requirement Of Two Phospho		2e-06
1nzl_A	103	Crystal Structure Of Src Sh2 Domain Bound To Doubly		2e-06
1is0_A	106	Crystal Structure Of A Complex Of The Src Sh2 Domai		2e-06
1sha_A	104	Crystal Structure Of The Phosphotyrosine Recognitio		2e-06
1p13_A	102	Crystal Structure Of The Src Sh2 Domain Complexed W		2e-06
1skj_A	113	Cocrystal Structure Of Urea-Substituted Phosphopept		2e-06
2h8h_A	535	Src Kinase In Complex With A Quinazoline Inhibitor		3e-06
1f1w_A	104	Src Sh2 Thref1trp Mutant Complexed With The Phospho		3e-06
1bkm_A	113	Cocrystal Structure Of D-Amino Acid Substituted Pho		3e-06
1tce_A	107	Solution Nmr Structure Of The Shc Sh2 Domain Comple		3e-06
1aot_F	106	Nmr Structure Of The Fyn Sh2 Domain Complexed With		4e-06
2dm0_A	125	Solution Structure Of The Sh2 Domain Of Human Tyros		4e-06
4f59_A	112	Triple Mutant Src Sh2 Domain Length = 112		4e-06
2ptk_A	453	Chicken Src Tyrosine Kinase Length = 453		4e-06
1g83_A	165	Crystal Structure Of Fyn Sh3-Sh2 Length = 165		5e-06
2dly_A	121	Solution Structure Of The Sh2 Domain Of Murine Fyn-		6e-06
2gsb_A	119	Solution Structure Of The Second Sh2 Domain Of Huma		7e-06
1csy_A	112	Syk Tyrosine Kinase C-Terminal Sh2 Domain Complexed		1e-05
1a81_A	254	Crystal Structure Of The Tandem Sh2 Domain Of The S		1e-05
2cs0_A	119	Solution Structure Of The Sh2 Domain Of Human Hsh2d		1e-05
4fl3_A	635	Structural And Biophysical Characterization Of The		1e-05
4fl2_A	636	Structural And Biophysical Characterization Of The		1e-05
1mil_A	104	Transforming Protein Length = 104		1e-05
2lqw_A	303	Solution Structure Of Phosphorylated Crkl Length =		2e-05
2lqn_A	303	Solution Structure Of Crkl Length = 303		2e-05
2eo3_A	111	Solution Structure Of The Sh2 Domain From Human Crk		2e-05
2crh_A	138	Solution Structure Of The Sh2 Domain Of Human Proto		2e-05
1blj_A	114	Nmr Ensemble Of Blk Sh2 Domain, 20 Structures Lengt		2e-05
2lct_A	107	Solution Structure Of The Vav1 Sh2 Domain Complexed		3e-05
2b3o_A	532	Crystal Structure Of Human Tyrosine Phosphatase Shp		4e-05
3ps5_A	595	Crystal Structure Of The Full-Length Human Protein		5e-05
1rja_A	100	Solution Structure And Backbone Dynamics Of The Non		5e-05
1jwo_A	97	Crystal Structure Analysis Of The Sh2 Domain Of The		6e-05
1x6c_A	118	Solution Structures Of The Sh2 Domain Of Human Prot		7e-05
3eaz_A	106	Crystal Structure Of Sh2 Domain Of Human Csk (Carbo		8e-05
2dx0_A	138	Crystal Structure Of The N-Terminal Sh2 Domain Of M		1e-04
1bfi_A	112	Solution Structure Of The C-Terminal Sh2 Domain Of		1e-04
2ekx_A	110	Solution Structure Of The Human Bmx Sh2 Domain Leng		1e-04
1qad_A	111	Crystal Structure Of The C-Terminal Sh2 Domain Of T		1e-04
1h9o_A	112	Phosphatidylinositol 3-Kinase, P85-Alpha Subunit: C		1e-04
1ad5_A	438	Src Family Kinase Hck-Amp-Pnp Complex Length = 438		2e-04
1k9a_A	450	Crystal Structure Analysis Of Full-Length Carboxyl-		2e-04
3eac_A	106	Crystal Structure Of Sh2 Domain Of Human Csk (Carbo		2e-04
3nhn_A	193	Crystal Structure Of The Src-Family Kinase Hck Sh3-		2e-04
2y3a_B	302	Crystal Structure Of P110beta In Complex With Icsh2		2e-04
2lnw_A	122	Identification And Structural Basis For A Novel Int		2e-04
2oq1_A	254	Tandem Sh2 Domains Of Zap-70 With 19-Mer Zeta1 Pept		2e-04
1m61_A	259	Crystal Structure Of The Apo Sh2 Domains Of Zap-70		2e-04
2ozo_A	613	Autoinhibited Intact Human Zap-70 Length = 613		2e-04
2dlz_A	118	Solution Structure Of The Sh2 Domain Of Human Prote		3e-04
3us4_A	98	Crystal Structure Of A Sh2 Domain Of A Megakaryocyt		3e-04
1qcf_A	454	Crystal Structure Of Hck In Complex With A Src Fami		3e-04
2hmh_A	152	Crystal Structure Of Socs3 In Complex With Gp130(Pt		3e-04
3m7f_A	108	Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX		3e-04
2bbu_A	164	Solution Structure Of Mouse Socs3 In Complex With A		4e-04
1nrv_A	105	Crystal Structure Of The Sh2 Domain Of Grb10 Length		4e-04
1wqu_A	114	Solution Structure Of The Human Fes Sh2 Domain Leng		5e-04
3hck_A	107	Nmr Ensemble Of The Uncomplexed Human Hck Sh2 Domai		6e-04
2ysx_A	119	Solution Structure Of The Human Ship Sh2 Domain Len		6e-04
2hdv_A	111	Crystal Structure Of The Src Homology-2 Domain Of T		6e-04
3cd3_A	377	Crystal Structure Of Phosphorylated Human Feline Sa		6e-04
3bkb_A	377	Crystal Structure Of Human Feline Sarcoma Viral Onc		6e-04
2aug_A	126	Crystal Structure Of The Grb14 Sh2 Domain Length =		9e-04

>pdb|1Z3K|A Chain A, Structural Insight Into The Binding Diversity Between The Tyr-Phosphorylated Human Ephrinbs And Nck2 Sh2 Domain Length = 98

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 58/93 (62%), Gaps = 7/93 (7%)
Query: 10  RNWYHGSVTRHEAENILRNSN-EGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTG 68
           R WY+G+VTRH+AE  L     EG +L+R+SES+  D+S+SLK++    H K+Q   +  
Sbjct: 1   REWYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQLVDNV- 59
Query: 69  KFILGQFSAPFDSVPEMIQHFAENRLPILGAEH 101
            + +GQ    F ++ E+++H+   + PI  +EH
Sbjct: 60  -YCIGQ--RRFHTMDELVEHY--KKAPIFTSEH 87

>pdb|2CIA|A Chain A, Human Nck2 Sh2-Domain In Complex With A Decaphosphopeptide From Translocated Intimin Receptor (Tir) Of Epec Length = 102

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 57/91 (62%), Gaps = 7/91 (7%)
Query: 12  WYHGSVTRHEAENILRNSN-EGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKF 70
           WY+G+VTRH+AE  L     EG +L+R+SES+  D+S+SLK++    H K+Q   +   +
Sbjct: 7   WYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQLVDNV--Y 64
Query: 71  ILGQFSAPFDSVPEMIQHFAENRLPILGAEH 101
            +GQ    F ++ E+++H+   + PI  +EH
Sbjct: 65  CIGQ--RRFHTMDELVEHY--KKAPIFTSEH 91

>pdb|2CI8|A Chain A, Sh2 Domain Of Human Nck1 Adaptor Protein - Uncomplexed Length = 99

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 54/90 (60%), Gaps = 7/90 (7%)
Query: 12  WYHGSVTRHEAENIL-RNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKF 70
           WY+G VTRH+AE  L    +EG +L+R+SES+  D+S+SLK+     H K+Q       +
Sbjct: 3   WYYGKVTRHQAEMALNERGHEGDFLIRDSESSPNDFSVSLKAQGKNKHFKVQLKETV--Y 60
Query: 71  ILGQFSAPFDSVPEMIQHFAENRLPILGAE 100
            +GQ    F ++ E+++H+   + PI  +E
Sbjct: 61  CIGQ--RKFSTMEELVEHY--KKAPIFTSE 86

>pdb|2CI9|A Chain A, Nck1 Sh2-Domain In Complex With A Dodecaphosphopeptide From Epec Protein Tir Length = 102

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 54/90 (60%), Gaps = 7/90 (7%)
Query: 12  WYHGSVTRHEAENIL-RNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKF 70
           WY+G VTRH+AE  L    +EG +L+R+SES+  D+S+SLK+     H K+Q       +
Sbjct: 7   WYYGKVTRHQAEMALNERGHEGDFLIRDSESSPNDFSVSLKAQGKNKHFKVQLKETV--Y 64
Query: 71  ILGQFSAPFDSVPEMIQHFAENRLPILGAE 100
            +GQ    F ++ E+++H+   + PI  +E
Sbjct: 65  CIGQ--RKFSTMEELVEHY--KKAPIFTSE 90

>pdb|2KK6|A Chain A, Solution Structure Of Sh2 Domain Of Proto-Oncogene Tyrosine- Protein Kinase Fer From Homo Sapiens, Northeast Structural Genomics Consortium (Nesg) Target Hr3461d Length = 116

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 54/104 (51%), Gaps = 6/104 (5%)
Query: 5   KPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRD 64
           KPL +++WYHG++ R EA+ +L+   +G +LVR S     +Y LS+ S     H  IQ  
Sbjct: 12  KPLAEQDWYHGAIPRIEAQELLK--KQGDFLVRESHGKPGEYVLSVYSDGQRRHFIIQYV 69
Query: 65  PDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPM 108
            +  +F        F ++P++I H    +  I     + LL+P+
Sbjct: 70  DNMYRF----EGTGFSNIPQLIDHHYTTKQVITKKSGVVLLNPI 109

>pdb|2EOB|A Chain A, Solution Structure Of The Second Sh2 Domain From Rat Plc Gamma-2 Length = 124

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 66/115 (57%), Gaps = 11/115 (9%)
Query: 1   MANPKPLDQRNWYHGSVTRHEAENIL-RNSNEGSYLVRNSESNRPDYSLSLKSARGFMHM 59
           + NP P + + WY+  ++R EAE++L R   +G++L+R  E     Y+++ ++     H 
Sbjct: 10  VPNPNPHESKPWYYDRLSRGEAEDMLMRIPRDGAFLIRKREGT-DSYAITFRARGKVKHC 68
Query: 60  KIQRDPDTGK-FILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQLL 113
           +I RD   G+ F+LG  SA F+S+ E++ ++ ++ L       M L +P+  +LL
Sbjct: 69  RINRD---GRHFVLGT-SAYFESLVELVSYYEKHAL----YRKMRLRYPVTPELL 115

>pdb|3TL0|A Chain A, Structure Of Shp2 N-Sh2 Domain In Complex With Rlnpyaqlwhr Peptide Length = 109

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Query: 7  LDQRNWYHGSVTRHEAENILRNSN-EGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDP 65
          +  R W+H ++T  EAEN+L     +GS+L R S+SN  D++LS++      H+KIQ   
Sbjct: 4  MTSRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKIQNTG 63
Query: 66 DTGKFILGQFSAPFDSVPEMIQHFAE 91
          D      G+    F ++ E++Q++ E
Sbjct: 64 DYYDLYGGE---KFATLAELVQYYME 86

>pdb|1AYA|A Chain A, Crystal Structures Of Peptide Complexes Of The Amino- Terminal Sh2 Domain Of The Syp Tyrosine Phosphatase Length = 101

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 48/83 (57%), Gaps = 4/83 (4%)
Query: 10 RNWYHGSVTRHEAENILRNSN-EGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTG 68
          R W+H ++T  EAEN+L     +GS+L R S+SN  D++LS++      H+KIQ   D  
Sbjct: 2  RRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKIQNTGDYY 61
Query: 69 KFILGQFSAPFDSVPEMIQHFAE 91
              G+    F ++ E++Q++ E
Sbjct: 62 DLYGGE---KFATLAELVQYYME 81

>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 495

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 7   LDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPD 66
           L++ +WYHG V+R+ AE +L +   GS+LVR SES+    S+SL+      H +I    D
Sbjct: 102 LEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASD 161
Query: 67  TGKFILGQFSAPFDSVPEMIQH 88
            GK  +   S  F+++ E++ H
Sbjct: 162 -GKLYVSSESR-FNTLAELVHH 181

>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 537

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 7   LDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPD 66
           L++ +WYHG V+R+ AE +L +   GS+LVR SES+    S+SL+      H +I    D
Sbjct: 141 LEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASD 200
Query: 67  TGKFILGQFSAPFDSVPEMIQH 88
            GK  +   S  F+++ E++ H
Sbjct: 201 -GKLYVSSESR-FNTLAELVHH 220

>pdb|3K2M|A Chain A, Crystal Structure Of Monobody Ha4ABL1 SH2 DOMAIN COMPLEX Length = 112

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 7  LDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPD 66
          L++ +WYHG V+R+ AE +L +   GS+LVR SES+    S+SL+      H +I    D
Sbjct: 2  LEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASD 61
Query: 67 TGKFILGQFSAPFDSVPEMIQH 88
           GK  +   S  F+++ E++ H
Sbjct: 62 -GKLYVSSESR-FNTLAELVHH 81

>pdb|3T04|A Chain A, Crystal Structure Of Monobody 7c12ABL1 SH2 DOMAIN COMPLEX Length = 123

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 7  LDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPD 66
          L++ +WYHG V+R+ AE +L +   GS+LVR SES+    S+SL+      H +I    D
Sbjct: 13 LEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASD 72
Query: 67 TGKFILGQFSAPFDSVPEMIQH 88
           GK  +   S  F+++ E++ H
Sbjct: 73 -GKLYVSSESR-FNTLAELVHH 92

>pdb|2ECD|A Chain A, Solution Structure Of The Human Abl2 Sh2 Domain Length = 119

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 7  LDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPD 66
          L++ +WYHG V+R  AE +L +   GS+LVR SES+    S+SL+      H +I    D
Sbjct: 13 LEKHSWYHGPVSRSAAEYLLSSLINGSFLVRESESSPGQLSISLRYEGRVYHYRINTTAD 72
Query: 67 TGKFILGQFSAPFDSVPEMIQH 88
             ++  +  + F ++ E++ H
Sbjct: 73 GKVYVTAE--SRFSTLAELVHH 92

>pdb|2ABL|A Chain A, Sh3-Sh2 Domain Fragment Of Human Bcr-Abl Tyrosine Kinase Length = 163

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 7   LDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPD 66
           L++ +WYHG V+R+ AE +L +   GS+LVR SES+    S+SL+      H +I    D
Sbjct: 67  LEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASD 126
Query: 67  TGKFILGQFSAPFDSVPEMIQH 88
            GK  +   S  F+++ E++ H
Sbjct: 127 -GKLYVSSESR-FNTLAELVHH 146

>pdb|2SHP|A Chain A, Tyrosine Phosphatase Shp-2 Length = 525

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 4/87 (4%)
Query: 7  LDQRNWYHGSVTRHEAENILRNSN-EGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDP 65
          +  R W+H ++T  EAEN+L     +GS+L R S+SN  D +LS++      H+KIQ   
Sbjct: 1  MKSRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDLTLSVRRNGAVTHIKIQNTG 60
Query: 66 DTGKFILGQFSAPFDSVPEMIQHFAEN 92
          D      G+    F ++ E++Q++ E+
Sbjct: 61 DYYDLYGGE---KFATLAELVQYYMEH 84

>pdb|1AB2|A Chain A, Three-Dimensional Solution Structure Of The Src Homology 2 Domain Of C-Abl Length = 109

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 7  LDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPD 66
          L++ +WYHG V+R+ AE +L +   GS+LVR SES+    S+SL+      H +I    D
Sbjct: 6  LEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASD 65
Query: 67 TGKFILGQFSAPFDSVPEMIQH 88
           GK  +   S  F+++ E++ H
Sbjct: 66 -GKLYVSSESR-FNTLAELVHH 85

>pdb|1R1P|A Chain A, Structural Basis For Differential Recognition Of Tyrosine Phosphorylated Sites In The Linker For Activation Of T Cells (lat) By The Adaptor Protein Gads Length = 100

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
Query: 12 WYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFI 71
          W+H  ++RH+AEN+L   + G +++R S+S+  D+S+S++      H K+ RD     F+
Sbjct: 11 WFHEGLSRHQAENLLMGKDIGFFIIRASQSSPGDFSISVRHEDDVQHFKVMRDTKGNYFL 70
Query: 72 LGQFSAPFDSVPEMIQHF 89
             ++  F S+ +++ ++
Sbjct: 71 ---WTEKFPSLNKLVDYY 85

>pdb|1GHU|A Chain A, Nmr Solution Structure Of Growth Factor Receptor-Bound Protein 2 (Grb2) Sh2 Domain, 24 Structures Length = 107

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 48/79 (60%), Gaps = 4/79 (5%)
Query: 11 NWYHGSVTRHEAENIL-RNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGK 69
          +W+ G + R +AE +L +  ++G++L+R SES   D+SLS+K      H K+ RD   GK
Sbjct: 2  SWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRD-GAGK 60
Query: 70 FILGQFSAPFDSVPEMIQH 88
          + L  +   F+S+ E++ +
Sbjct: 61 YFL--WVVKFNSLNELVDY 77

>pdb|1FHS|A Chain A, The Three-Dimensional Solution Structure Of The Src Homology Domain-2 Of The Growth Factor Receptor Bound Protein-2, Nmr, 18 Structures Length = 112

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 4/78 (5%)
Query: 12 WYHGSVTRHEAENIL-RNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKF 70
          W+ G + R +AE +L +  ++G++L+R SES   D+SLS+K      H K+ RD   GK+
Sbjct: 9  WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRD-GAGKY 67
Query: 71 ILGQFSAPFDSVPEMIQH 88
           L  +   F+S+ E++ +
Sbjct: 68 FL--WVVKFNSLNELVDY 83

>pdb|3OVE|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A Pyxn- Derived Tripeptide Length = 117

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 4/78 (5%)
Query: 12 WYHGSVTRHEAENIL-RNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKF 70
          W+ G + R +AE +L +  ++G++L+R SES   D+SLS+K      H K+ RD   GK+
Sbjct: 8  WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRD-GAGKY 66
Query: 71 ILGQFSAPFDSVPEMIQH 88
           L  +   F+S+ E++ +
Sbjct: 67 FL--WVVKFNSLNELVDY 82

>pdb|3IMD|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A Flexible Ac-Py-Q-N-Nh2 Tripeptide Mimic Length = 117

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 4/78 (5%)
Query: 12 WYHGSVTRHEAENIL-RNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKF 70
          W+ G + R +AE +L +  ++G++L+R SES   D+SLS+K      H K+ RD   GK+
Sbjct: 8  WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRD-GAGKY 66
Query: 71 ILGQFSAPFDSVPEMIQH 88
           L  +   F+S+ E++ +
Sbjct: 67 FL--WVVKFNSLNELVDY 82

>pdb|3N84|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A 23-Membered Macrocyclic Ligand Having The Sequence Pyvnvp Length = 112

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 4/78 (5%)
Query: 12 WYHGSVTRHEAENIL-RNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKF 70
          W+ G + R +AE +L +  ++G++L+R SES   D+SLS+K      H K+ RD   GK+
Sbjct: 9  WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRD-GAGKY 67
Query: 71 ILGQFSAPFDSVPEMIQH 88
           L  +   F+S+ E++ +
Sbjct: 68 FL--WVVKFNSLNELVDY 83

>pdb|1BMB|A Chain A, Grb2-Sh2 Domain In Complex With KpfyVnvef (Pkf270-974) Length = 123

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 4/78 (5%)
Query: 12 WYHGSVTRHEAENIL-RNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKF 70
          W+ G + R +AE +L +  ++G++L+R SES   D+SLS+K      H K+ RD   GK+
Sbjct: 15 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRD-GAGKY 73
Query: 71 ILGQFSAPFDSVPEMIQH 88
           L  +   F+S+ E++ +
Sbjct: 74 FL--WVVKFNSLNELVDY 89

>pdb|1JYQ|A Chain A, Xray Structure Of Grb2 Sh2 Domain Complexed With A Highly Affine Phospho Peptide Length = 96

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 4/78 (5%)
Query: 12 WYHGSVTRHEAENIL-RNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKF 70
          W+ G + R +AE +L +  ++G++L+R SES   D+SLS+K      H K+ RD   GK+
Sbjct: 5  WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDG-AGKY 63
Query: 71 ILGQFSAPFDSVPEMIQH 88
           L  +   F+S+ E++ +
Sbjct: 64 FL--WVVKFNSLNELVDY 79

>pdb|2H46|E Chain E, Native Domain-Swapped Dimer Crystal Structure Of The Grb2 Sh2 Domain Length = 116

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 4/78 (5%)
Query: 12 WYHGSVTRHEAENIL-RNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKF 70
          W+ G + R +AE +L +  ++G++L+R SES   D+SLS+K      H K+ RD   GK+
Sbjct: 8  WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRD-GAGKY 66
Query: 71 ILGQFSAPFDSVPEMIQH 88
           L  +   F+S+ E++ +
Sbjct: 67 FL--WVVKFNSLNELVDY 82

>pdb|1A1A|A Chain A, C-Src (Sh2 Domain With C188a Mutation) Complexed With Ace-Formyl Phosphotyr-Glu-(N,N-Dipentyl Amine) Length = 107

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 52/87 (59%), Gaps = 9/87 (10%)
Query: 12 WYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLK---SARGF--MHMKIQRD 64
          WY G +TR E+E +L N+    G++LVR SE+ +  YSLS+    +A+G    H KI R 
Sbjct: 9  WYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYSLSVSDFDNAKGLNVKHYKI-RK 67
Query: 65 PDTGKFILGQFSAPFDSVPEMIQHFAE 91
           D+G F +      F+S+ +++ ++++
Sbjct: 68 LDSGGFYITS-RTQFNSLQQLVAYYSK 93

>pdb|1FU5|A Chain A, Nmr Structure Of The N-Sh2 Domain Of The P85 Subunit Of Pi3- Kinase Complexed To A Doubly Phosphorylated Peptide Derived From Polyomavirus Middle T Antigen Length = 111

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 1   MANPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESN-RPDYSLSLKSARGFMHM 59
           M N   L    WY G ++R E    LR++ +G++LVR++ +    DY+L+L+       +
Sbjct: 2   MNNNMSLQDAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKSI 61
Query: 60  KI-QRDPDTGKFILGQFSAP--FDSVPEMIQHFAENRLPILGAE-HMCLLHPM 108
           KI  RD   G      FS P  F+SV E+I H+    L     +  + LL+P+
Sbjct: 62  KIFHRDGKYG------FSDPLTFNSVVELINHYRNESLAQYNPKLDVKLLYPV 108

>pdb|2AOA|A Chain A, Crystal Structures Of A High-affinity Macrocyclic Peptide Mimetic In Complex With The Grb2 Sh2 Domain Length = 99

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 4/78 (5%)
Query: 12 WYHGSVTRHEAENIL-RNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKF 70
          W+ G + R +AE +L +  ++G++L+R SES   D+SLS+K      H K+ RD   GK+
Sbjct: 6  WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRD-GAGKY 64
Query: 71 ILGQFSAPFDSVPEMIQH 88
           L  +   F+S+ E++ +
Sbjct: 65 FL--WVVKFNSLNELVDY 80

>pdb|1BM2|A Chain A, Grb2-Sh2 Domain In Complex With Cyclo-[n-Alpha-Acetyl-L-Thi Alysyl-O-Phosphotyrosyl-Valyl-Asparagyl-Valyl-Prolyl] (Pkf273-791) Length = 117

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 4/78 (5%)
Query: 12 WYHGSVTRHEAENIL-RNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKF 70
          W+ G + R +AE +L +  ++G++L+R SES   D+SLS+K      H K+ RD   GK+
Sbjct: 14 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRD-GAGKY 72
Query: 71 ILGQFSAPFDSVPEMIQH 88
           L  +   F+S+ E++ +
Sbjct: 73 FL--WVVKFNSLNELVDY 88

>pdb|1GRI|A Chain A, Grb2 Length = 217

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 4/78 (5%)
Query: 12  WYHGSVTRHEAENIL-RNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKF 70
           W+ G + R +AE +L +  ++G++L+R SES   D+SLS+K      H K+ RD   GK+
Sbjct: 60  WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRD-GAGKY 118
Query: 71  ILGQFSAPFDSVPEMIQH 88
            L  +   F+S+ E++ +
Sbjct: 119 FL--WVVKFNSLNELVDY 134

>pdb|1TZE|E Chain E, Signal Transduction Adaptor Growth Factor, Grb2 Sh2 Domain Complexed With Phosphotyrosyl Heptapeptide Lys-Pro-Phe-Ptyr-Val-Asn-Val-Nh2 (Kfppyvnc-Nh2) Length = 98

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 4/78 (5%)
Query: 12 WYHGSVTRHEAENIL-RNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKF 70
          W+ G + R +AE +L +  ++G++L+R SES   D+SLS+K      H K+ RD   GK+
Sbjct: 6  WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRD-GAGKY 64
Query: 71 ILGQFSAPFDSVPEMIQH 88
           L  +   F+S+ E++ +
Sbjct: 65 FL--WVVKFNSLNELVDY 80

>pdb|1FYR|A Chain A, Dimer Formation Through Domain Swapping In The Crystal Structure Of The Grb2-Sh2 Ac-Pyvnv Complex Length = 114

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 4/78 (5%)
Query: 12 WYHGSVTRHEAENIL-RNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKF 70
          W+ G + R +AE +L +  ++G++L+R SES   D+SLS+K      H K+ RD   GK+
Sbjct: 13 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRD-GAGKY 71
Query: 71 ILGQFSAPFDSVPEMIQH 88
           L  +   F+S+ E++ +
Sbjct: 72 FL--WVVKFNSLNELVDY 87

>pdb|1OO3|A Chain A, P395s Mutant Of The P85 Regulatory Subunit Of The N- Terminal Src Homology 2 Domain Of Pi3-Kinase Length = 111

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 57/111 (51%), Gaps = 7/111 (6%)
Query: 1   MANPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESN-RPDYSLSLKSARGFMHM 59
           M N   L    WY G ++R E    LR++ +G++LVR++ +    DY+L+L+       +
Sbjct: 2   MNNNMSLQDAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKSI 61
Query: 60  KI-QRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAE-HMCLLHPM 108
           KI  RD   GK+     S  F+SV E+I H+    L     +  + LL+P+
Sbjct: 62  KIFHRD---GKYGFSD-SLTFNSVVELINHYRNESLAQYNPKLDVKLLYPV 108

>pdb|1X0N|A Chain A, Nmr Structure Of Growth Factor Receptor Binding Protein Sh2 Domain Complexed With The Inhibitor Length = 104

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 4/78 (5%)
Query: 12 WYHGSVTRHEAENIL-RNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKF 70
          W+ G + R +AE +L +  ++G++L+R SES   D+SLS+K      H K+ RD   GK+
Sbjct: 5  WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRD-GAGKY 63
Query: 71 ILGQFSAPFDSVPEMIQH 88
           L  +   F+S+ E++ +
Sbjct: 64 FL--WVVKFNSLNELVDY 79

>pdb|1ZFP|E Chain E, Growth Factor Receptor Binding Protein Sh2 Domain Complexed With A Phosphotyrosyl Pentapeptide Length = 98

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 4/78 (5%)
Query: 12 WYHGSVTRHEAENIL-RNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKF 70
          W+ G + R +AE +L +  ++G++L+R SES   D+SLS+K      H K+ RD   GK+
Sbjct: 5  WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRD-GAGKY 63
Query: 71 ILGQFSAPFDSVPEMIQH 88
           L  +   F+S+ E++ +
Sbjct: 64 FL--WVVKFNSLNELVDY 79

>pdb|1CJ1|A Chain A, Growth Factor Receptor Binding Protein Sh2 Domain (Human) Complexed With A Phosphotyrosyl Derivative Length = 96

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 4/78 (5%)
Query: 12 WYHGSVTRHEAENIL-RNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKF 70
          W+ G + R +AE +L +  ++G++L+R SES   D+SLS+K      H K+ RD   GK+
Sbjct: 4  WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRD-GAGKY 62
Query: 71 ILGQFSAPFDSVPEMIQH 88
           L  +   F+S+ E++ +
Sbjct: 63 FL--WVVKFNSLNELVDY 78

>pdb|3MXC|A Chain A, Structures Of Grb2-Sh2 Domain And Aicd Peptide Complexes Reveal A Conformational Switch And Their Functional Implications. Length = 101

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 4/78 (5%)
Query: 12 WYHGSVTRHEAENIL-RNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKF 70
          W+ G + R +AE +L +  ++G++L+R SES   D+SLS+K      H K+ RD   GK+
Sbjct: 9  WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRD-GAGKY 67
Query: 71 ILGQFSAPFDSVPEMIQH 88
           L  +   F+S+ E++ +
Sbjct: 68 FL--WVVKFNSLNELVDY 83

>pdb|2IUG|A Chain A, Crystal Structure Of The Pi3-Kinase P85 N-Terminal Sh2 Domain Length = 120

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 11/113 (9%)
Query: 1   MANPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESN-RPDYSLSLKSARGFMHM 59
           M N   L    WY G ++R E    LR++ +G++LVR++ +    DY+L+L+       +
Sbjct: 2   MNNNMSLQNAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLI 61
Query: 60  KI-QRDPDTGKFILGQFSAP--FDSVPEMIQHFAENRLPILGAE-HMCLLHPM 108
           KI  RD   G      FS P  F SV E+I H+    L     +  + LL+P+
Sbjct: 62  KIFHRDGKYG------FSDPLTFSSVVELINHYRNESLAQYNPKLDVKLLYPV 108

>pdb|1O41|A Chain A, Crystal Structure Of Sh2 In Complex With Ru78300. Length = 108

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 51/87 (58%), Gaps = 9/87 (10%)
Query: 12 WYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLK---SARGF--MHMKIQRD 64
          WY G +TR E+E +L N+    G++LVR SE+ +  Y LS+    +A+G    H KI R 
Sbjct: 7  WYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKI-RK 65
Query: 65 PDTGKFILGQFSAPFDSVPEMIQHFAE 91
           D+G F +      F+S+ +++ ++++
Sbjct: 66 LDSGGFYITS-RTQFNSLQQLVAYYSK 91

>pdb|1SHD|A Chain A, Peptide Inhibitors Of Src Sh3-Sh2-Phosphoprotein Interactions Length = 107

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 51/87 (58%), Gaps = 9/87 (10%)
Query: 12 WYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLK---SARGF--MHMKIQRD 64
          WY G +TR E+E +L N+    G++LVR SE+ +  Y LS+    +A+G    H KI R 
Sbjct: 9  WYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKI-RK 67
Query: 65 PDTGKFILGQFSAPFDSVPEMIQHFAE 91
           D+G F +      F+S+ +++ ++++
Sbjct: 68 LDSGGFYITS-RTQFNSLQQLVAYYSK 93

>pdb|2RD0|B Chain B, Structure Of A Human P110alpha/p85alpha Complex Length = 279

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 11/113 (9%)
Query: 1   MANPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESN-RPDYSLSLKSARGFMHM 59
           M N   L    WY G ++R E    LR++ +G++LVR++ +    DY+L+L+       +
Sbjct: 1   MNNNMSLQDAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLI 60
Query: 60  KI-QRDPDTGKFILGQFSAP--FDSVPEMIQHFAENRLPILGAE-HMCLLHPM 108
           KI  RD   G      FS P  F SV E+I H+    L     +  + LL+P+
Sbjct: 61  KIFHRDGKYG------FSDPLTFSSVVELINHYRNESLAQYNPKLDVKLLYPV 107

>pdb|2VIF|A Chain A, Crystal Structure Of Socs6 Sh2 Domain In Complex With A C-Kit Phosphopeptide Length = 141

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 36/58 (62%)
Query: 5  KPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQ 62
          K L ++ WY G +TR EAE  L N  +GS+LVR+S  +R   SLS +S    +H +I+
Sbjct: 19 KKLAKQGWYWGPITRWEAEGKLANVPDGSFLVRDSSDDRYLLSLSFRSHGKTLHTRIE 76

>pdb|1O4C|A Chain A, Crystal Structure Of Sh2 In Complex With Phosphate. Length = 108

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 51/87 (58%), Gaps = 9/87 (10%)
Query: 12 WYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLK---SARGF--MHMKIQRD 64
          WY G +TR E+E +L N+    G++LVR SE+ +  Y LS+    +A+G    H KI R 
Sbjct: 7  WYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYXLSVSDFDNAKGLNVKHYKI-RK 65
Query: 65 PDTGKFILGQFSAPFDSVPEMIQHFAE 91
           D+G F +      F+S+ +++ ++++
Sbjct: 66 LDSGGFYITS-RTQFNSLQQLVAYYSK 91

>pdb|2C9W|A Chain A, Crystal Structure Of Socs-2 In Complex With Elongin-B And Elongin-C At 1.9a Resolution Length = 169

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 52/93 (55%), Gaps = 8/93 (8%)
Query: 5   KPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRD 64
           + L Q  WY GS+T +EA+  L+ + EG++L+R+S  +    ++S+K++ G  +++I+  
Sbjct: 12  RELGQTGWYWGSMTVNEAKEKLKEAPEGTFLIRDSSHSDYLLTISVKTSAGPTNLRIEYQ 71
Query: 65  PDTGKFILGQFSA------PFDSVPEMIQHFAE 91
              GKF L            FDSV  +I ++ +
Sbjct: 72  D--GKFRLDSIICVKSKLKQFDSVVHLIDYYVQ 102

>pdb|1KC2|A Chain A, Structure Of The Triple (Lys(Beta)d3ala, Asp(Beta)c8ala, Aspcd2ala) Mutant Of The Src Sh2 Domain Bound To The Pqpyeeipi Peptide Length = 103

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 9/87 (10%)
Query: 12 WYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLKS---ARGF--MHMKIQRD 64
          WY G +TR E+E +L N     G++LVR SE+ +  Y LS+ +   A+G    H KI R 
Sbjct: 4  WYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSAFANAKGLNVAHYKI-RK 62
Query: 65 PDTGKFILGQFSAPFDSVPEMIQHFAE 91
           D+G F +      F S+ +++ ++++
Sbjct: 63 LDSGGFYITS-RTQFSSLQQLVAYYSK 88

>pdb|2PNA|A Chain A, Structure Of An Sh2 Domain Of The P85 Alpha Subunit Of Phosphatidylinositol-3-Oh Kinase Length = 104

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 11/107 (10%)
Query: 7   LDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESN-RPDYSLSLKSARGFMHMKI-QRD 64
           L    WY G ++R E    LR++ +G++LVR++ +    DY+L+L+       +KI  RD
Sbjct: 1   LQDAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHRD 60
Query: 65  PDTGKFILGQFSAP--FDSVPEMIQHFAENRLPILGAE-HMCLLHPM 108
              G      FS P  F+SV E+I H+    L     +  + LL+P+
Sbjct: 61  GKYG------FSDPLTFNSVVELINHYRNESLAQYNPKLDVKLLYPV 101

>pdb|3HHM|B Chain B, Crystal Structure Of P110alpha H1047r Mutant In Complex With Nish2 Of P85alpha And The Drug Wortmannin Length = 373

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/98 (33%), Positives = 49/98 (50%), Gaps = 10/98 (10%)
Query: 1  MANPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESN-RPDYSLSLKSARGFMHM 59
          M N   L    WY G ++R E    LR++ +G++LVR++ +    DY+L+L+       +
Sbjct: 1  MNNNMSLQNAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLI 60
Query: 60 KI-QRDPDTGKFILGQFSAP--FDSVPEMIQHFAENRL 94
          KI  RD   G      FS P  F SV E+I H+    L
Sbjct: 61 KIFHRDGKYG------FSDPLTFSSVVELINHYRNESL 92

>pdb|4EY0|A Chain A, Structure Of Tandem Sh2 Domains From Plcgamma1 Length = 246

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 65/108 (60%), Gaps = 12/108 (11%)
Query: 8   DQRNWYHGSVTRHEAENIL-RNSNEGSYLVRNSESNRPD-YSLSLKSARGFMHMKIQRDP 65
           + + WYH S+TR +AE++L R   +G++LVR  + N P+ Y++S ++     H ++Q++ 
Sbjct: 120 ESKEWYHASLTRAQAEHMLMRVPRDGAFLVR--KRNEPNSYAISFRAEGKIKHCRVQQEG 177
Query: 66  DTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQLL 113
            T   +LG  ++ FDS+ ++I ++ ++ L       M L +P+ E+ L
Sbjct: 178 QT--VMLG--NSEFDSLVDLISYYEKHPL----YRKMKLRYPINEEAL 217

>pdb|3GQI|B Chain B, Crystal Structure Of Activated Receptor Tyrosine Kinase In Complex With Substrates Length = 226

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 65/108 (60%), Gaps = 12/108 (11%)
Query: 8   DQRNWYHGSVTRHEAENIL-RNSNEGSYLVRNSESNRPD-YSLSLKSARGFMHMKIQRDP 65
           + + WYH S+TR +AE++L R   +G++LVR  + N P+ Y++S ++     H ++Q++ 
Sbjct: 120 ESKEWYHASLTRAQAEHMLMRVPRDGAFLVR--KRNEPNSYAISFRAEGKIKHCRVQQEG 177
Query: 66  DTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQLL 113
            T   +LG  ++ FDS+ ++I ++ ++ L       M L +P+ E+ L
Sbjct: 178 QT--VMLG--NSEFDSLVDLISYYEKHPL----YRKMKLRYPINEEAL 217

>pdb|4FBN|A Chain A, Insights Into Structural Integration Of The Plcgamma Regulatory Region And Mechanism Of Autoinhibition And Activation Based On Key Roles Of Sh2 Domains Length = 246

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 65/108 (60%), Gaps = 12/108 (11%)
Query: 8   DQRNWYHGSVTRHEAENIL-RNSNEGSYLVRNSESNRPD-YSLSLKSARGFMHMKIQRDP 65
           + + WYH S+TR +AE++L R   +G++LVR  + N P+ Y++S ++     H ++Q++ 
Sbjct: 120 ESKEWYHASLTRAQAEHMLMRVPRDGAFLVR--KRNEPNSYAISFRAEGKIKHCRVQQEG 177
Query: 66  DTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQLL 113
            T   +LG  ++ FDS+ ++I ++ ++ L       M L +P+ E+ L
Sbjct: 178 QT--VMLG--NSEFDSLVDLISYYEKHPL----YRKMKLRYPINEEAL 217

>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An Inhibitor Length = 452

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/99 (30%), Positives = 55/99 (55%), Gaps = 9/99 (9%)
Query: 1   MANPKPLDQRNWYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLK---SARG 55
           +A    +    WY G +TR E+E +L N+    G++LVR SE+ +  Y LS+    +A+G
Sbjct: 56  VAPSDSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKG 115
Query: 56  F--MHMKIQRDPDTGKFILGQFSAPFDSVPEMIQHFAEN 92
               H KI R  D+G F +      F+S+ +++ +++++
Sbjct: 116 LNVKHYKI-RKLDSGGFYITS-RTQFNSLQQLVAYYSKH 152

>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly Mutant) In Complex With N6-Benzyl Adp Length = 452

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/99 (30%), Positives = 55/99 (55%), Gaps = 9/99 (9%)
Query: 1   MANPKPLDQRNWYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLK---SARG 55
           +A    +    WY G +TR E+E +L N+    G++LVR SE+ +  Y LS+    +A+G
Sbjct: 56  VAPSDSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKG 115
Query: 56  F--MHMKIQRDPDTGKFILGQFSAPFDSVPEMIQHFAEN 92
               H KI R  D+G F +      F+S+ +++ +++++
Sbjct: 116 LNVKHYKI-RKLDSGGFYITS-RTQFNSLQQLVAYYSKH 152

>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src Length = 452

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/99 (30%), Positives = 55/99 (55%), Gaps = 9/99 (9%)
Query: 1   MANPKPLDQRNWYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLK---SARG 55
           +A    +    WY G +TR E+E +L N+    G++LVR SE+ +  Y LS+    +A+G
Sbjct: 56  VAPSDSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKG 115
Query: 56  F--MHMKIQRDPDTGKFILGQFSAPFDSVPEMIQHFAEN 92
               H KI R  D+G F +      F+S+ +++ +++++
Sbjct: 116 LNVKHYKI-RKLDSGGFYITS-RTQFNSLQQLVAYYSKH 152

>pdb|1BKL|A Chain A, Self-Associated Apo Src Sh2 Domain Length = 113

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 9/87 (10%)
Query: 12 WYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLK---SARGF--MHMKIQRD 64
          WY G +TR E+E++L N     G++LVR SE+ +  Y LS+    +A+G    H KI R 
Sbjct: 6  WYFGKITRRESESLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKI-RK 64
Query: 65 PDTGKFILGQFSAPFDSVPEMIQHFAE 91
           D+G F +      F S+ +++ ++++
Sbjct: 65 LDSGGFYITS-RTQFSSLQQLVAYYSK 90

>pdb|3UF4|A Chain A, Crystal Structure Of A Sh3 And Sh2 Domains Of Fyn Protein (Proto- Concogene Tyrosine-Protein Kinase Fyn) From Mus Musculus At 1.98 A Resolution Length = 164

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 56/100 (56%), Gaps = 15/100 (15%)
Query: 12  WYHGSVTRHEAE-NILRNSN-EGSYLVRNSESNRPDYSLSLK---SARG--FMHMKIQRD 64
           WY G + R +AE  +L   N  G++L+R SE+ +  YSLS++     +G    H KI++ 
Sbjct: 69  WYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDXKGDHVKHYKIRKL 128
Query: 65  PDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCL 104
            + G +I  +  A F+++ +++QH++E       A+ +C 
Sbjct: 129 DNGGYYITTR--AQFETLQQLVQHYSEK------ADGLCF 160

>pdb|2FCI|A Chain A, Structural Basis For The Requirement Of Two Phosphotyrosines In Signaling Mediated By Syk Tyrosine Kinase Length = 105

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 66/112 (58%), Gaps = 12/112 (10%)
Query: 2   ANPKPLDQRNWYHGSVTRHEAENIL-RNSNEGSYLVRNSESNRPD-YSLSLKSARGFMHM 59
            +P   + + WYH S+TR +AE++L R   +G++LVR  + N P+ Y++S ++     H 
Sbjct: 1   GSPGIHESKEWYHASLTRAQAEHMLMRVPRDGAFLVR--KRNEPNSYAISFRAEGKIKHC 58
Query: 60  KIQRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQ 111
           ++Q++  T   +LG  ++ FDS+ ++I ++ ++ L       M L +P+ E+
Sbjct: 59  RVQQEGQT--VMLG--NSEFDSLVDLISYYEKHPL----YRKMKLRYPINEE 102

>pdb|1NZL|A Chain A, Crystal Structure Of Src Sh2 Domain Bound To Doubly Phosphorylated Peptide Pqpyepyipi Length = 103

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 9/87 (10%)
Query: 12 WYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLK---SARGF--MHMKIQRD 64
          WY G +TR E+E +L N     G++LVR SE+ +  Y LS+    +A+G    H KI R 
Sbjct: 4  WYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKI-RK 62
Query: 65 PDTGKFILGQFSAPFDSVPEMIQHFAE 91
           D+G F +      F S+ +++ ++++
Sbjct: 63 LDSGGFYITS-RTQFSSLQQLVAYYSK 88

>pdb|1IS0|A Chain A, Crystal Structure Of A Complex Of The Src Sh2 Domain With Conformationally Constrained Peptide Inhibitor Length = 106

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 9/87 (10%)
Query: 12 WYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLK---SARGF--MHMKIQRD 64
          WY G +TR E+E +L N     G++LVR SE+ +  Y LS+    +A+G    H KI R 
Sbjct: 5  WYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKI-RK 63
Query: 65 PDTGKFILGQFSAPFDSVPEMIQHFAE 91
           D+G F +      F S+ +++ ++++
Sbjct: 64 LDSGGFYITS-RTQFSSLQQLVAYYSK 89

>pdb|1SHA|A Chain A, Crystal Structure Of The Phosphotyrosine Recognition Domain Sh2 Of V-Src Complexed With Tyrosine-Phosphorylated Peptides Length = 104

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 9/87 (10%)
Query: 12 WYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLK---SARGF--MHMKIQRD 64
          WY G +TR E+E +L N     G++LVR SE+ +  Y LS+    +A+G    H KI R 
Sbjct: 5  WYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKI-RK 63
Query: 65 PDTGKFILGQFSAPFDSVPEMIQHFAE 91
           D+G F +      F S+ +++ ++++
Sbjct: 64 LDSGGFYITS-RTQFSSLQQLVAYYSK 89

>pdb|1P13|A Chain A, Crystal Structure Of The Src Sh2 Domain Complexed With Peptide (Sdpyanfk) Length = 102

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 9/87 (10%)
Query: 12 WYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLK---SARGF--MHMKIQRD 64
          WY G +TR E+E +L N     G++LVR SE+ +  Y LS+    +A+G    H KI R 
Sbjct: 4  WYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKI-RK 62
Query: 65 PDTGKFILGQFSAPFDSVPEMIQHFAE 91
           D+G F +      F S+ +++ ++++
Sbjct: 63 LDSGGFYITS-RTQFSSLQQLVAYYSK 88

>pdb|1SKJ|A Chain A, Cocrystal Structure Of Urea-Substituted Phosphopeptide Complex Length = 113

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 9/87 (10%)
Query: 12 WYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLK---SARGF--MHMKIQRD 64
          WY G +TR E+E +L N     G++LVR SE+ +  Y LS+    +A+G    H KI R 
Sbjct: 6  WYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKI-RK 64
Query: 65 PDTGKFILGQFSAPFDSVPEMIQHFAE 91
           D+G F +      F S+ +++ ++++
Sbjct: 65 LDSGGFYITS-RTQFSSLQQLVAYYSK 90

>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor Length = 535

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/99 (30%), Positives = 55/99 (55%), Gaps = 9/99 (9%)
Query: 1   MANPKPLDQRNWYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLK---SARG 55
           +A    +    WY G +TR E+E +L N+    G++LVR SE+ +  Y LS+    +A+G
Sbjct: 139 VAPSDSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKG 198
Query: 56  F--MHMKIQRDPDTGKFILGQFSAPFDSVPEMIQHFAEN 92
               H KI R  D+G F +      F+S+ +++ +++++
Sbjct: 199 LNVKHYKI-RKLDSGGFYITS-RTQFNSLQQLVAYYSKH 235

>pdb|1F1W|A Chain A, Src Sh2 Thref1trp Mutant Complexed With The Phosphopeptide S(Ptr)vnvqn Length = 104

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 9/87 (10%)
Query: 12 WYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLK---SARGF--MHMKIQRD 64
          WY G +TR E+E +L N     G++LVR SE+ +  Y LS+    +A+G    H KI R 
Sbjct: 5  WYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKI-RK 63
Query: 65 PDTGKFILGQFSAPFDSVPEMIQHFAE 91
           D+G F +      F S+ +++ ++++
Sbjct: 64 LDSGGFYIWS-RTQFSSLQQLVAYYSK 89

>pdb|1BKM|A Chain A, Cocrystal Structure Of D-Amino Acid Substituted Phosphopeptide Complex Length = 113

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 9/87 (10%)
Query: 12 WYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLK---SARGF--MHMKIQRD 64
          WY G +TR E+E +L N     G++LVR SE+ +  Y LS+    +A+G    H KI R 
Sbjct: 6  WYFGKITRRESEALLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKI-RK 64
Query: 65 PDTGKFILGQFSAPFDSVPEMIQHFAE 91
           D+G F +      F S+ +++ ++++
Sbjct: 65 LDSGGFYITS-RTQFSSLQQLVAYYSK 90

>pdb|1TCE|A Chain A, Solution Nmr Structure Of The Shc Sh2 Domain Complexed With A Tyrosine-Phosphorylated Peptide From The T-Cell Receptor, Minimized Average Structure Length = 107

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 55/103 (53%), Gaps = 7/103 (6%)
Query: 12  WYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFI 71
           W+HG ++R EAE +L+ +  G +LVR S +    Y L+   +    H+ +  DP+    +
Sbjct: 9   WFHGKLSRREAEALLQLN--GDFLVRESTTTPGQYVLTGSQSGQPKHLLLV-DPEG---V 62
Query: 72  LGQFSAPFDSVPEMIQHFAENRLPILGA-EHMCLLHPMIEQLL 113
           +      F+SV  +I +  +N LPI+ A   +CL  P+  +LL
Sbjct: 63  VRTKDHRFESVSHLISYHMDNHLPIISAGSELCLQQPVERKLL 105

>pdb|1AOT|F Chain F, Nmr Structure Of The Fyn Sh2 Domain Complexed With A Phosphotyrosyl Peptide, Minimized Average Structure Length = 106

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 52/87 (59%), Gaps = 9/87 (10%)
Query: 12 WYHGSVTRHEAE-NILRNSN-EGSYLVRNSESNRPDYSLSLK---SARG--FMHMKIQRD 64
          WY G + R +AE  +L   N  G++L+R SE+ +  YSLS++     +G    H KI++ 
Sbjct: 7  WYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIRKL 66
Query: 65 PDTGKFILGQFSAPFDSVPEMIQHFAE 91
           + G +I  +  A F+++ +++QH++E
Sbjct: 67 DNGGYYITTR--AQFETLQQLVQHYSE 91

>pdb|2DM0|A Chain A, Solution Structure Of The Sh2 Domain Of Human Tyrosine- Protein Kinase Txk Length = 125

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 59/98 (60%), Gaps = 10/98 (10%)
Query: 7   LDQRNWYHGSVTRHEAENILRN-SNEGSYLVRNSESNRPDYSLSL------KSARGFMHM 59
           L+   WYH ++TR++AE++LR  S EG+++VR+S  +   Y++S+       +     H 
Sbjct: 13  LEIYEWYHRNITRNQAEHLLRQESKEGAFIVRDSR-HLGSYTISVFMGARRSTEAAIKHY 71
Query: 60  KIQRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPIL 97
           +I+++ D+G++ + +  A F S+PE+I +   N   ++
Sbjct: 72  QIKKN-DSGQWYVAERHA-FQSIPELIWYHQHNAAGLM 107

>pdb|4F59|A Chain A, Triple Mutant Src Sh2 Domain Length = 112

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 51/86 (59%), Gaps = 7/86 (8%)
Query: 12 WYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLK---SARGF-MHMKIQRDP 65
          WY G +TR E+E +L N+    G++LVR SE+ +  Y+LS+    +A+G  +   + R  
Sbjct: 11 WYFGKITRRESERLLLNAENPRGTFLVRESETVKGAYALSVSDFDNAKGLNVKHYLIRKL 70
Query: 66 DTGKFILGQFSAPFDSVPEMIQHFAE 91
          D+G F +      F+S+ +++ ++++
Sbjct: 71 DSGGFYITS-RTQFNSLQQLVAYYSK 95

>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase Length = 453

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 9/99 (9%)
Query: 1   MANPKPLDQRNWYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLK---SARG 55
           +A    +    WY G +TR E+E +L N     G++LVR SE+ +  Y LS+    +A+G
Sbjct: 57  VAPSDSIQAEEWYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKG 116
Query: 56  F--MHMKIQRDPDTGKFILGQFSAPFDSVPEMIQHFAEN 92
               H KI R  D+G F +      F S+ +++ +++++
Sbjct: 117 LNVKHYKI-RKLDSGGFYITS-RTQFSSLQQLVAYYSKH 153

>pdb|1G83|A Chain A, Crystal Structure Of Fyn Sh3-Sh2 Length = 165

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 52/87 (59%), Gaps = 9/87 (10%)
Query: 12  WYHGSVTRHEAE-NILRNSN-EGSYLVRNSESNRPDYSLSLK---SARG--FMHMKIQRD 64
           WY G + R +AE  +L   N  G++L+R SE+ +  YSLS++     +G    H KI++ 
Sbjct: 68  WYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIRKL 127
Query: 65  PDTGKFILGQFSAPFDSVPEMIQHFAE 91
            + G +I  +  A F+++ +++QH++E
Sbjct: 128 DNGGYYITTR--AQFETLQQLVQHYSE 152

>pdb|2DLY|A Chain A, Solution Structure Of The Sh2 Domain Of Murine Fyn-Related Kinase Length = 121

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 4/91 (4%)
Query: 2  ANPKPLDQRNWYHGSVTRHEAEN-ILRNSNE-GSYLVRNSESNRPDYSLSLKSARGFMHM 59
          A  + L    W+ G++ R +AE  +L + N+ G++L+R SES + D+SLS+       H 
Sbjct: 8  AEDRSLQAEPWFFGAIKRADAEKQLLYSENQTGAFLIRESESQKGDFSLSVLDEGVVKHY 67
Query: 60 KIQRDPDTGKFILGQFSAPFDSVPEMIQHFA 90
          +I+R  D G F L +    F ++ E + ++ 
Sbjct: 68 RIRR-LDEGGFFLTR-RKVFSTLNEFVNYYT 96

>pdb|2GSB|A Chain A, Solution Structure Of The Second Sh2 Domain Of Human Ras Gtpase-Activating Protein 1 Length = 119

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 50/90 (55%), Gaps = 4/90 (4%)
Query: 6  PLDQRNWYHGSVTRHEAENILRNSNE-GSYLVRNSESNRPDYSLSLKSARGFMHMKIQRD 64
          P + + W+HG +++ EA N+L    +  S+LVR S++   DYSL  ++       KI   
Sbjct: 12 PHEGKIWFHGKISKQEAYNLLMTVGQVCSFLVRPSDNTPGDYSLYFRTNENIQRFKICPT 71
Query: 65 PDTGKFILGQFSAPFDSVPEMIQHFAENRL 94
          P+    + G++   ++S+ ++I H+ + ++
Sbjct: 72 PNNQFMMGGRY---YNSIGDIIDHYRKEQI 98

>pdb|1CSY|A Chain A, Syk Tyrosine Kinase C-Terminal Sh2 Domain Complexed With A Phosphopeptidefrom The Gamma Chain Of The High Affinity Immunoglobin G Receptor, Nmr Length = 112

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 47/81 (58%), Gaps = 5/81 (6%)
Query: 12 WYHGSVTRHEAENI--LRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGK 69
          W+HG ++R E+E I  + +   G +L+R  ++N   Y+L L      +H +I +D  TGK
Sbjct: 15 WFHGKISREESEQIVLIGSKTNGKFLIRARDNN-GSYALCLLHEGKVLHYRIDKDK-TGK 72
Query: 70 FILGQFSAPFDSVPEMIQHFA 90
            + +    FD++ ++++H++
Sbjct: 73 LSIPE-GKKFDTLWQLVEHYS 92

>pdb|1A81|A Chain A, Crystal Structure Of The Tandem Sh2 Domain Of The Syk Kinase Bound To A Dually Tyrosine-Phosphorylated Itam Length = 254

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 12  WYHGSVTRHEAENI--LRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGK 69
           W+HG ++R E+E I  + +   G +L+R +  N   Y+L L      +H +I +D  TGK
Sbjct: 160 WFHGKISREESEQIVLIGSKTNGKFLIR-ARDNNGSYALCLLHEGKVLHYRIDKD-KTGK 217
Query: 70  FILGQFSAPFDSVPEMIQHFA 90
             + +    FD++ ++++H++
Sbjct: 218 LSIPE-GKKFDTLWQLVEHYS 237

>pdb|2CS0|A Chain A, Solution Structure Of The Sh2 Domain Of Human Hsh2d Protein Length = 119

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 11 NWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKF 70
           W+HG+++R +AEN+L +   GS+L+R S S+   Y+LS K+     H  ++   D G F
Sbjct: 17 EWFHGAISREDAENLLESQPLGSFLIRVSHSHV-GYTLSYKAQSSCCHFMVKL-LDDGTF 74
Query: 71 IL 72
          ++
Sbjct: 75 MI 76

>pdb|4FL3|A Chain A, Structural And Biophysical Characterization Of The Syk Activation Switch Length = 635

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 12  WYHGSVTRHEAENI--LRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGK 69
           W+HG ++R E+E I  + +   G +L+R +  N   Y+L L      +H +I +D  TGK
Sbjct: 168 WFHGKISREESEQIVLIGSKTNGKFLIR-ARDNNGSYALCLLHEGKVLHYRIDKD-KTGK 225
Query: 70  FILGQFSAPFDSVPEMIQHFA 90
             + +    FD++ ++++H++
Sbjct: 226 LSIPE-GKKFDTLWQLVEHYS 245

>pdb|4FL2|A Chain A, Structural And Biophysical Characterization Of The Syk Activation Switch Length = 636

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 12  WYHGSVTRHEAENI--LRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGK 69
           W+HG ++R E+E I  + +   G +L+R +  N   Y+L L      +H +I +D  TGK
Sbjct: 169 WFHGKISREESEQIVLIGSKTNGKFLIR-ARDNNGSYALCLLHEGKVLHYRIDKD-KTGK 226
Query: 70  FILGQFSAPFDSVPEMIQHFA 90
             + +    FD++ ++++H++
Sbjct: 227 LSIPE-GKKFDTLWQLVEHYS 246

>pdb|1MIL|A Chain A, Transforming Protein Length = 104

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 54/102 (52%), Gaps = 7/102 (6%)
Query: 12  WYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFI 71
           W+HG ++R EAE +L+ +  G +LVR S +    Y L+   +    H+ +  DP+    +
Sbjct: 9   WFHGKLSRREAEALLQLN--GDFLVRESTTTPGQYVLTGLQSGQPKHLLLV-DPEG---V 62
Query: 72  LGQFSAPFDSVPEMIQHFAENRLPILGA-EHMCLLHPMIEQL 112
           +      F+SV  +I +  +N LPI+ A   +CL  P+  +L
Sbjct: 63  VRTKDHRFESVSHLISYHMDNHLPIISAGSELCLQQPVERKL 104

>pdb|2LQW|A Chain A, Solution Structure Of Phosphorylated Crkl Length = 303

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 8  DQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDT 67
          D+  WY G V+R EA+  L+    G +LVR+S +   DY LS+       H  I   P+ 
Sbjct: 10 DRSAWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNR 69
Query: 68 GKFILGQFSAPFDSVPEMIQHF 89
           +F +G     FD +P +++ +
Sbjct: 70 -RFKIGDQE--FDHLPALLEFY 88

>pdb|2LQN|A Chain A, Solution Structure Of Crkl Length = 303

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 8  DQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDT 67
          D+  WY G V+R EA+  L+    G +LVR+S +   DY LS+       H  I   P+ 
Sbjct: 10 DRSAWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNR 69
Query: 68 GKFILGQFSAPFDSVPEMIQHF 89
           +F +G     FD +P +++ +
Sbjct: 70 -RFKIGDQE--FDHLPALLEFY 88

>pdb|2EO3|A Chain A, Solution Structure Of The Sh2 Domain From Human Crk-Like Protein Length = 111

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 8  DQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDT 67
          D+  WY G V+R EA+  L+    G +LVR+S +   DY LS+       H  I   P+ 
Sbjct: 17 DRSAWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNR 76
Query: 68 GKFILGQFSAPFDSVPEMIQHF 89
           +F +G     FD +P +++ +
Sbjct: 77 -RFKIGD--QEFDHLPALLEFY 95

>pdb|2CRH|A Chain A, Solution Structure Of The Sh2 Domain Of Human Proto- Oncogene Protein Vav1 Length = 138

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 4   PKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQR 63
           P+ L    WY G + R  AE+IL N ++G++LVR    +  ++++S+K      H+KI  
Sbjct: 20  PQDLSVHLWYAGPMERAGAESILANRSDGTFLVRQRVKDAAEFAISIKYNVEVKHIKIM- 78
Query: 64  DPDTGKFILGQFSAPFDSVPEMIQHFAENRL 94
               G + + +  A F  + E+++ + +N L
Sbjct: 79  -TAEGLYRITEKKA-FRGLTELVEFYQQNSL 107

>pdb|1BLJ|A Chain A, Nmr Ensemble Of Blk Sh2 Domain, 20 Structures Length = 114

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 56/98 (57%), Gaps = 8/98 (8%)
Query: 1  MANPKPLDQRNWYHGSVTRHEAENILRN--SNEGSYLVRNSESNRPDYSLSLK--SARG- 55
          +A  + L+   W+  +++R +AE  L    +  GS+L+R SESN+  +SLS+K  + +G 
Sbjct: 3  VAPVETLEVEKWFFRTISRKDAERQLLAPMNKAGSFLIRESESNKGAFSLSVKDITTQGE 62
Query: 56 -FMHMKIQRDPDTGKFILGQFSAPFDSVPEMIQHFAEN 92
             H KI+   + G +I  + + P  ++  ++QH+++ 
Sbjct: 63 VVKHYKIRSLDNGGYYISPRITFP--TLQALVQHYSKK 98

>pdb|2LCT|A Chain A, Solution Structure Of The Vav1 Sh2 Domain Complexed With A Syk-Derived Doubly Phosphorylated Peptide Length = 107

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 12 WYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFI 71
          WY G + R  AE+IL N ++G++LVR    +  ++++S+K      H+KI      G + 
Sbjct: 11 WYAGPMERAGAESILANRSDGTFLVRQRVKDAAEFAISIKYNVEVKHIKIM--TAEGLYR 68
Query: 72 LGQFSAPFDSVPEMIQHFAENRLP 95
          + +  A F  + E+++ + +N L 
Sbjct: 69 ITEKKA-FRGLTELVEFYQQNSLK 91

>pdb|2B3O|A Chain A, Crystal Structure Of Human Tyrosine Phosphatase Shp-1 Length = 532

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 12 WYHGSVTRHEAENILRNSN-EGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKF 70
          W+H  ++  +AE +L+     GS+L R S  N+ D+SLS++      H++IQ   D    
Sbjct: 4  WFHRDLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHIRIQNSGDFYDL 63
Query: 71 ILGQFSAPFDSVPEMIQHFAENR 93
            G+    F ++ E+++++ + +
Sbjct: 64 YGGE---KFATLTELVEYYTQQQ 83

>pdb|3PS5|A Chain A, Crystal Structure Of The Full-Length Human Protein Tyrosine Phosphatase Shp-1 Length = 595

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 12 WYHGSVTRHEAENILRNSN-EGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKF 70
          W+H  ++  +AE +L+     GS+L R S  N+ D+SLS++      H++IQ   D    
Sbjct: 4  WFHRDLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHIRIQNSGDFYDL 63
Query: 71 ILGQFSAPFDSVPEMIQHFAENR 93
            G+    F ++ E+++++ + +
Sbjct: 64 YGGE---KFATLTELVEYYTQQQ 83

>pdb|1RJA|A Chain A, Solution Structure And Backbone Dynamics Of The Nonreceptor Tyrosine Kinase Ptk6BRK SH2 DOMAIN Length = 100

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 12 WYHGSVTRHEAENILR--NSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGK 69
          W+ G ++R EA   L+   +  G++L+R SE    DY LS++  +   H KI R    G+
Sbjct: 4  WFFGCISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAG-GR 62
Query: 70 FILGQFSAPFDSVPEMIQH 88
            L + +  F S+PE++ +
Sbjct: 63 LHLNE-AVSFLSLPELVNY 80

>pdb|1JWO|A Chain A, Crystal Structure Analysis Of The Sh2 Domain Of The Csk Homologous Kinase Chk Length = 97

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Query: 12 WYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKI-QRDPDTGKF 70
          W+HG ++  EA   L+   +G +LVR S  +  DY L +   R  +H ++  RD   G  
Sbjct: 6  WFHGKISGQEAVQQLQPPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHRD---GHL 62
Query: 71 ILGQFSAPFDSVPEMIQHFAENRLPI 96
           + + +  F ++ +M++H+++++  I
Sbjct: 63 TIDE-AVFFCNLMDMVEHYSKDKGAI 87

>pdb|1X6C|A Chain A, Solution Structures Of The Sh2 Domain Of Human Protein- Tyrosine Phosphatase Shp-1 Length = 118

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 50/94 (53%), Gaps = 13/94 (13%)
Query: 11 NWYHGSVTRHEAENILRNSNE-GSYLVRNSESNRPDYSLSL-----KSARG----FMHMK 60
           WYHG ++  +AE +L+   E  ++LVR S S   D+ LS+     K+  G      H+K
Sbjct: 7  GWYHGHMSGGQAETLLQAKGEPWTFLVRESLSQPGDFVLSVLSDQPKAGPGSPLRVTHIK 66
Query: 61 IQRDPDTGKFILGQFSAPFDSVPEMIQHFAENRL 94
          +    + G++ +G     FDS+ ++++HF +  +
Sbjct: 67 VMC--EGGRYTVGGLET-FDSLTDLVEHFKKTGI 97

>pdb|3EAZ|A Chain A, Crystal Structure Of Sh2 Domain Of Human Csk (Carboxyl- Terminal Src Kinase), C122s Mutant Length = 106

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 12 WYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFI 71
          W+HG +TR +AE +L     G +LVR S +   DY+L + S     H +I       K  
Sbjct: 10 WFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSSDGKVEHYRIMY--HASKLS 67
Query: 72 LGQFSAPFDSVPEMIQHFAEN 92
          + +    F+++ ++++H+  +
Sbjct: 68 IDE-EVYFENLMQLVEHYTSD 87

>pdb|2DX0|A Chain A, Crystal Structure Of The N-Terminal Sh2 Domain Of Mouse Phospholipase C-Gamma 2 Length = 138

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 10/92 (10%)
Query: 12  WYHGSV-TRHEAENILR------NSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRD 64
           W+H  V +R  AE +L+       + +G++LVR SE+   DY+LS   +    H +I+  
Sbjct: 24  WFHKKVESRTSAEKLLQEYCAETGAKDGTFLVRESETFPNDYTLSFWRSGRVQHCRIRST 83
Query: 65  PDTG--KFILGQFSAPFDSVPEMIQHFAENRL 94
            + G  K+ L   +  F+S+  +IQH+ E  L
Sbjct: 84  MENGVMKYYLTD-NLTFNSIYALIQHYREAHL 114

>pdb|1BFI|A Chain A, Solution Structure Of The C-Terminal Sh2 Domain Of The P85alpha Regulatory Subunit Of Phosphoinositide 3-Kinase, Nmr, 30 Structures Length = 112

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Query: 8  DQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDT 67
          D++ W  GS  R++AEN+LR   +G++LVR S S +  Y+ S+       H  I +   T
Sbjct: 8  DEKTWNVGSSNRNKAENLLRGKRDGTFLVRES-SKQGCYACSVVVDGEVKHCVINKTA-T 65
Query: 68 GKFILGQFSAPFD---SVPEMIQHFAENRL 94
          G      F+ P++   S+ E++ H+    L
Sbjct: 66 GY----GFAEPYNLYSSLKELVLHYQHTSL 91

>pdb|2EKX|A Chain A, Solution Structure Of The Human Bmx Sh2 Domain Length = 110

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 54/98 (55%), Gaps = 10/98 (10%)
Query: 7   LDQRNWYHGSVTRHEAENILR-NSNEGSYLVRNSESNRPDYSLSLKS-----ARGFM-HM 59
           LD  +W+ G+++R ++E +LR    EG+++VRNS S    Y++SL S      +G + H 
Sbjct: 8   LDDYDWFAGNISRSQSEQLLRQKGKEGAFMVRNS-SQVGMYTVSLFSKAVNDKKGTVKHY 66
Query: 60  KIQRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPIL 97
            +  + +   ++   +   FDS+P++I +   N   ++
Sbjct: 67  HVHTNAENKLYLAENYC--FDSIPKLIHYHQHNSAGMI 102

>pdb|1QAD|A Chain A, Crystal Structure Of The C-Terminal Sh2 Domain Of The P85 Alpha Regulatory Subunit Of Phosphoinositide 3-Kinase: An Sh2 Domain Mimicking Its Own Substrate Length = 111

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Query: 8  DQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDT 67
          D++ W  GS  R++AEN+LR   +G++LVR S S +  Y+ S+       H  I +   T
Sbjct: 7  DEKTWNVGSSNRNKAENLLRGKRDGTFLVRES-SKQGCYACSVVVDGEVKHCVINKTA-T 64
Query: 68 GKFILGQFSAPFD---SVPEMIQHFAENRL 94
          G      F+ P++   S+ E++ H+    L
Sbjct: 65 GY----GFAEPYNLYSSLKELVLHYQHTSL 90

>pdb|1H9O|A Chain A, Phosphatidylinositol 3-Kinase, P85-Alpha Subunit: C-Terminal Sh2 Domain Complexed With A Tyr751 Phosphopeptide From The Pdgf Receptor, Crystal Structure At 1.79 A Length = 112

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Query: 8  DQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDT 67
          D++ W  GS  R++AEN+LR   +G++LVR S S +  Y+ S+       H  I +   T
Sbjct: 8  DEKTWNVGSSNRNKAENLLRGKRDGTFLVRES-SKQGCYACSVVVDGEVKHCVINKTA-T 65
Query: 68 GKFILGQFSAPFD---SVPEMIQHFAENRL 94
          G      F+ P++   S+ E++ H+    L
Sbjct: 66 GY----GFAEPYNLYSSLKELVLHYQHTSL 91

>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex Length = 438

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 1   MANPKPLDQRNWYHGSVTRHEAENILRNSNE--GSYLVRNSESNRPDYSLSLKS-----A 53
           +A    L+   W+   ++R +AE  L       GS+++R+SE+ +  YSLS++       
Sbjct: 55  VARVDSLETEEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQG 114
Query: 54  RGFMHMKIQRDPDTGKFILGQFSAPFDSVPEMIQHFAEN 92
               H KI R  D G F +   S  F ++ E++ H+ + 
Sbjct: 115 DTVKHYKI-RTLDNGGFYISPRST-FSTLQELVDHYKKG 151

>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length Carboxyl-Terminal Src Kinase At 2.5 A Resolution Length = 450

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 12  WYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFI 71
           W+HG +TR +AE +L     G +LVR S +   DY+L +       H +I       K  
Sbjct: 82  WFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSCEGKVEHYRIMY--HASKLS 139
Query: 72  LGQFSAPFDSVPEMIQHFAEN 92
           + +    F+++ ++++H+  +
Sbjct: 140 IDE-EVYFENLMQLVEHYTTD 159

>pdb|3EAC|A Chain A, Crystal Structure Of Sh2 Domain Of Human Csk (Carboxyl- Terminal Src Kinase), Oxidized Form Length = 106

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 12 WYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFI 71
          W+HG +TR +AE +L     G +LVR S +   DY+L +       H +I       K  
Sbjct: 10 WFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSCDGKVEHYRIMY--HASKLS 67
Query: 72 LGQFSAPFDSVPEMIQHFAEN 92
          + +    F+++ ++++H+  +
Sbjct: 68 IDE-EVYFENLMQLVEHYTSD 87

>pdb|3NHN|A Chain A, Crystal Structure Of The Src-Family Kinase Hck Sh3-Sh2-Linker Regulatory Region Length = 193

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 1   MANPKPLDQRNWYHGSVTRHEAENILRNSNE--GSYLVRNSESNRPDYSLSLKS-----A 53
           +A    L+   W+   ++R +AE  L       GS+++R+SE+ +  YSLS++       
Sbjct: 62  VARVDSLETEEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQG 121
Query: 54  RGFMHMKIQRDPDTGKFILGQFSAPFDSVPEMIQHFAEN 92
               H KI R  D G F +   S  F ++ E++ H+ + 
Sbjct: 122 DTVKHYKI-RTLDNGGFYISPRST-FSTLQELVDHYKKG 158

>pdb|2Y3A|B Chain B, Crystal Structure Of P110beta In Complex With Icsh2 Of P85beta And The Drug Gdc-0941 Length = 302

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 9/85 (10%)
Query: 8   DQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDT 67
           ++R WY G + R +AE +L    +G++L+R S S R  Y+ S+       H  I R   T
Sbjct: 192 EERTWYVGKINRTQAEEMLSGKRDGTFLIRES-SQRGCYACSVVVDGDTKHCVIYRTA-T 249
Query: 68  GKFILGQFSAPFD---SVPEMIQHF 89
           G    G F+ P++   S+ E++ H+
Sbjct: 250 G---FG-FAEPYNLYGSLKELVLHY 270

>pdb|2LNW|A Chain A, Identification And Structural Basis For A Novel Interaction Between Vav2 And Arap3 Length = 122

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/78 (23%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 12 WYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFI 71
          W+ G++ R + +N+L++   G+YL+R   +    +++S+K      H+K+    +   +I
Sbjct: 24 WFAGNMERQQTDNLLKSHASGTYLIRERPAEAERFAISIKFNDEVKHIKV---VEKDNWI 80
Query: 72 LGQFSAPFDSVPEMIQHF 89
              +  FDS+ E+++++
Sbjct: 81 HITEAKKFDSLLELVEYY 98

>pdb|2OQ1|A Chain A, Tandem Sh2 Domains Of Zap-70 With 19-Mer Zeta1 Peptide Length = 254

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 12  WYHGSVTRHEAENILRNS--NEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGK 69
           WYH S+TR EAE  L +    +G +L+R     +  Y+LSL   +   H  I +D   GK
Sbjct: 161 WYHSSLTREEAERKLYSGAQTDGKFLLR-PRKEQGTYALSLIYGKTVYHYLISQD-KAGK 218
Query: 70  FILGQFSAPFDSVPEMIQHF 89
           + + +    FD++ +++++ 
Sbjct: 219 YCIPE-GTKFDTLWQLVEYL 237

>pdb|1M61|A Chain A, Crystal Structure Of The Apo Sh2 Domains Of Zap-70 Length = 259

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 12  WYHGSVTRHEAENILRNS--NEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGK 69
           WYH S+TR EAE  L +    +G +L+R     +  Y+LSL   +   H  I +D   GK
Sbjct: 166 WYHSSLTREEAERKLYSGAQTDGKFLLR-PRKEQGTYALSLIYGKTVYHYLISQD-KAGK 223
Query: 70  FILGQFSAPFDSVPEMIQHF 89
           + + +    FD++ +++++ 
Sbjct: 224 YCIPE-GTKFDTLWQLVEYL 242

>pdb|2OZO|A Chain A, Autoinhibited Intact Human Zap-70 Length = 613

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 12  WYHGSVTRHEAENILRNS--NEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGK 69
           WYH S+TR EAE  L +    +G +L+R     +  Y+LSL   +   H  I +D   GK
Sbjct: 163 WYHSSLTREEAERKLYSGAQTDGKFLLR-PRKEQGTYALSLIYGKTVYHYLISQD-KAGK 220
Query: 70  FILGQFSAPFDSVPEMIQHF 89
           + + +    FD++ +++++ 
Sbjct: 221 YCIPE-GTKFDTLWQLVEYL 239

>pdb|2DLZ|A Chain A, Solution Structure Of The Sh2 Domain Of Human Protein Vav-2 Length = 118

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/78 (23%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 12 WYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFI 71
          W+ G++ R + +N+L++   G+YL+R   +    +++S+K      H+K+    +   +I
Sbjct: 18 WFAGNMERQQTDNLLKSHASGTYLIRERPAEAERFAISIKFNDEVKHIKV---VEKDNWI 74
Query: 72 LGQFSAPFDSVPEMIQHF 89
              +  FDS+ E+++++
Sbjct: 75 HITEAKKFDSLLELVEYY 92

>pdb|3US4|A Chain A, Crystal Structure Of A Sh2 Domain Of A Megakaryocyte-Associated Tyrosine Kinase (Matk) From Homo Sapiens At 1.50 A Resolution Length = 98

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 12 WYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKI-QRDPDTGKF 70
          W+HG ++  EA   L+   +G +LVR S  +  DY L +   R  +H ++  RD   G  
Sbjct: 7  WFHGKISGQEAVQQLQPPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHRD---GHL 63
Query: 71 ILGQFSAPFDSVPEMIQHFAENRLPI 96
           + + +  F ++ + ++H+++++  I
Sbjct: 64 TIDE-AVFFCNLXDXVEHYSKDKGAI 88

>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family- Selective Tyrosine Kinase Inhibitor Length = 454

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 9/98 (9%)
Query: 1   MANPKPLDQRNWYHGSVTRHEAENILRNSNE--GSYLVRNSESNRPDYSLSL-----KSA 53
           +A    L+   W+   ++R +AE  L       GS+++R+SE+ +  YSLS+     +  
Sbjct: 61  VARVDSLETEEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQG 120
Query: 54  RGFMHMKIQRDPDTGKFILGQFSAPFDSVPEMIQHFAE 91
               H KI R  D G F +   S  F ++ E++ H+ +
Sbjct: 121 DTVKHYKI-RTLDNGGFYISPRST-FSTLQELVDHYKK 156

>pdb|2HMH|A Chain A, Crystal Structure Of Socs3 In Complex With Gp130(Ptyr757) Phosphopeptide Length = 152

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 8/91 (8%)
Query: 5   KPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRD 64
           + L +  +Y  +VT  EA  +L     G++L+R+S   R  ++LS+K+  G  +++IQ  
Sbjct: 29  RKLQESGFYWSAVTGGEANLLLSAEPAGTFLIRDSSDQRHFFTLSVKTQSGTKNLRIQX- 87
Query: 65  PDTGKFIL------GQFSAPFDSVPEMIQHF 89
            + G F L       Q    FD V +++ H+
Sbjct: 88  -EGGSFSLQSDPRSTQPVPRFDXVLKLVHHY 117

>pdb|3M7F|A Chain A, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX Length = 108

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/101 (24%), Positives = 53/101 (52%), Gaps = 7/101 (6%)
Query: 10  RNWYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDT 67
           ++W+HG ++R E+  I++     +G +L+R+S+SN   + L+L   +   + +I    D 
Sbjct: 5   QHWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPCEDD 64
Query: 68  GK--FILGQFSAPFDSVPEMIQHFAENR--LPILGAEHMCL 104
           G+  F L   +  F  + +++  +  N+  LP    +H C+
Sbjct: 65  GQTFFSLDDGNTKFSDLIQLVDFYQLNKGVLPC-KLKHHCI 104

>pdb|2BBU|A Chain A, Solution Structure Of Mouse Socs3 In Complex With A Phosphopeptide From The Gp130 Receptor Length = 164

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 8/89 (8%)
Query: 7   LDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPD 66
           L +  +Y  +VT  EA  +L     G++L+R+S   R  ++LS+K+  G  +++IQ   +
Sbjct: 20  LQESGFYWSAVTGGEANLLLSAEPAGTFLIRDSSDQRHFFTLSVKTQSGTKNLRIQC--E 77
Query: 67  TGKFIL------GQFSAPFDSVPEMIQHF 89
            G F L       Q    FD V +++ H+
Sbjct: 78  GGSFSLQSDPRSTQPVPRFDCVLKLVHHY 106

>pdb|1NRV|A Chain A, Crystal Structure Of The Sh2 Domain Of Grb10 Length = 105

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/101 (24%), Positives = 53/101 (52%), Gaps = 7/101 (6%)
Query: 10  RNWYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDT 67
           ++W+HG ++R E+  I++     +G +L+R+S+SN   + L+L   +   + +I    D 
Sbjct: 5   QHWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPCEDD 64
Query: 68  GK--FILGQFSAPFDSVPEMIQHFAENR--LPILGAEHMCL 104
           G+  F L   +  F  + +++  +  N+  LP    +H C+
Sbjct: 65  GQTFFSLDDGNTKFSDLIQLVDFYQLNKGVLPC-KLKHHCI 104

>pdb|1WQU|A Chain A, Solution Structure Of The Human Fes Sh2 Domain Length = 114

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 7/100 (7%)
Query: 5   KPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRD 64
           KPL ++ WYHG++ R E   +L +S  G +LVR S+  + +Y LS+       H  IQ  
Sbjct: 11  KPLHEQLWYHGAIPRAEVAELLVHS--GDFLVRESQGKQ-EYVLSVLWDGLPRHFIIQSL 67
Query: 65  PDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCL 104
            +  +         F S+P +I H    + P+     + L
Sbjct: 68  DNLYRL----EGEGFPSIPLLIDHLLSTQQPLTKKSGVVL 103

>pdb|3HCK|A Chain A, Nmr Ensemble Of The Uncomplexed Human Hck Sh2 Domain, 20 Structures Length = 107

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Query: 7  LDQRNWYHGSVTRHEAENILRNSNE--GSYLVRNSESNRPDYSLSLKS-----ARGFMHM 59
          ++   W+   ++R +AE  L       GS+++R+SE+ +  YSLS++           H 
Sbjct: 1  METEEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHY 60
Query: 60 KIQRDPDTGKFILGQFSAPFDSVPEMIQHFAEN 92
          KI R  D G F +   S  F ++ E++ H+ + 
Sbjct: 61 KI-RTLDNGGFYISPRST-FSTLQELVDHYKKG 91

>pdb|2YSX|A Chain A, Solution Structure Of The Human Ship Sh2 Domain Length = 119

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 12 WYHGSVTRHEAENIL-RNSNEGSYLVRNSESNRPDYSLSL 50
          W HG++TR +AE +L R   +GS+LVR SES    Y+L +
Sbjct: 12 WNHGNITRSKAEELLSRTGKDGSFLVRASESISRAYALCV 51

>pdb|2HDV|A Chain A, Crystal Structure Of The Src Homology-2 Domain Of The Adapter Protein Sh2-B Length = 111

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 12/101 (11%)
Query: 2  ANPKPLDQRNWYHGSVTRHEAENILRNSNEGS---YLVRNSESNRPDYSLSLKSARGFMH 58
           + +PL    W+HG ++R +A  ++     GS   +LVR SE+ R +  L+        H
Sbjct: 1  GSDQPLSGYPWFHGMLSRLKAAQLVLEGGTGSHGVFLVRQSETRRGECVLTFNFQGKAKH 60
Query: 59 MKIQRDPDTGKFILGQFSAP---FDSVPEMIQHFAENRLPI 96
          +++  +        GQ       F S+ +M++HF  + +P+
Sbjct: 61 LRLSLNAA------GQCRVQHLHFQSIFDMLEHFRVHPIPL 95

>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma Viral Oncogene Homologue (V-Fes) In Complex With Staurosporine And A Consensus Peptide Length = 377

Iteration: 1
 Score = 38.9 bits (89), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 7/92 (7%)
Query: 5  KPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRD 64
          KPL ++ WYHG++ R E   +L +S  G +LVR S+  + +Y LS+       H  IQ  
Sbjct: 8  KPLHEQLWYHGAIPRAEVAELLVHS--GDFLVRESQGKQ-EYVLSVLWDGLPRHFIIQ-S 63
Query: 65 PDTGKFILGQFSAPFDSVPEMIQHFAENRLPI 96
           D    + G+    F S+P +I H    + P+
Sbjct: 64 LDNLYRLEGE---GFPSIPLLIDHLLSTQQPL 92

>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene Homologue (V- Fes) Length = 377

Iteration: 1
 Score = 38.9 bits (89), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 7/92 (7%)
Query: 5  KPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRD 64
          KPL ++ WYHG++ R E   +L +S  G +LVR S+  + +Y LS+       H  IQ  
Sbjct: 8  KPLHEQLWYHGAIPRAEVAELLVHS--GDFLVRESQGKQ-EYVLSVLWDGLPRHFIIQ-S 63
Query: 65 PDTGKFILGQFSAPFDSVPEMIQHFAENRLPI 96
           D    + G+    F S+P +I H    + P+
Sbjct: 64 LDNLYRLEGE---GFPSIPLLIDHLLSTQQPL 92

>pdb|2AUG|A Chain A, Crystal Structure Of The Grb14 Sh2 Domain Length = 126

Iteration: 1
 Score = 38.5 bits (88), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 12  WYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGK 69
           W+H  ++R EA+ ++      +G +LVR+S+SN   + LS+   +   H +I    D G+
Sbjct: 28  WFHHKISRDEAQRLIIQQGLVDGVFLVRDSQSNPKTFVLSMSHGQKIKHFQIIPVEDDGE 87
Query: 70  FI--LGQFSAPFDSVPEMIQHFAENR 93
               L      F  + ++++ +  N+
Sbjct: 88  MFHTLDDGHTRFTDLIQLVEFYQLNK 113

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	113
2iug_A	120	Phosphatidylinositol 3-kinase regulatory alpha sub	3e-35
2hdv_A	111	SH2-B PH domain containing signaling mediator 1 ga	2e-34
2vif_A	141	Suppressor of cytokine signalling 6; growth regula	7e-34
2ecd_A	119	Tyrosine-protein kinase ABL2; SH2 domain, phosphot	1e-33
2kk6_A	116	Proto-oncogene tyrosine-protein kinase FER; method	2e-33
2eob_A	124	1-phosphatidylinositol-4,5-bisphosphate phosphodie	3e-33
2eo3_A	111	CRK-like protein; phosphorylation, repeat, SH2 dom	1e-32
2gsb_A	119	RAS GTPase-activating protein 1; GAP, RAS P21 prot	1e-32
2cia_A	102	Cytoplasmic protein NCK2; SH2-domain, SH3 domain,	2e-32
3tkz_A	109	Tyrosine-protein phosphatase non-receptor type 11;	2e-32
3k2m_A	112	Proto-oncogene tyrosine-protein kinase ABL1; engin	3e-32
1mil_A	104	SHC adaptor protein; SH2 domain, phosphorylation,	6e-32
2cs0_A	119	Hematopoietic SH2 domain containing; ALX, FLJ14886	1e-31
1wqu_A	114	C-FES, proto-oncogene tyrosine-protein kinase FES/	1e-31
2c9w_A	169	Suppressor of cytokine signaling 2; growth regulat	1e-31
3ov1_A	117	Growth factor receptor-bound protein 2; GRB2 SH2 d	2e-31
2dlz_A	118	Protein VAV-2; RHO family guanine nucleotide excha	3e-31
1r1p_A	100	GRB2-related adaptor protein 2; SH2, GADS, phospho	4e-31
1jyr_A	96	Growth factor receptor-bound protein 2; receptor b	4e-30
3hhm_B	373	NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidil	4e-29
3hhm_B	373	NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidil	1e-16
2eo6_A	141	B-cell linker protein; SH2, cytoplasmic adapter pr	1e-28
2bbu_A	164	Suppressor of cytokine signaling 3; SH2 domain, ex	2e-28
2crh_A	138	VAV proto-oncogene; oncoprotein, structural genomi	3e-28
2izv_A	187	Suppressor of cytokine signaling 4; signal transdu	1e-27
2hmh_A	152	Suppressor of cytokine signaling 3; SOCS3, GP130,	1e-27
1h9o_A	112	Phosphatidylinositol 3-kinase; transferase/recepto	7e-27
2dly_A	121	FYN-related kinase; BRK family kinase, structural	7e-27
1d4t_A	104	T cell signal transduction molecule SAP; SH2 domai	8e-27
1ju5_A	109	CRK; CRK, SH2, SH3, adaptor protein, phosphopeptid	2e-26
3us4_A	98	Megakaryocyte-associated tyrosine-protein kinase;	2e-26
1ka6_A	128	SH2 domain protein 1A; SH2 domain, protein-peptide	3e-26
1rja_A	100	Tyrosine-protein kinase 6; human protein tyrosine	4e-26
2ekx_A	110	Cytoplasmic tyrosine-protein kinase BMX; SH2 domai	2e-25
3eaz_A	106	Tyrosine-protein kinase CSK; SH2, disulfide, oxidi	6e-25
2ysx_A	119	Signaling inositol polyphosphate phosphatase SHIP	7e-25
2dm0_A	125	Tyrosine-protein kinase TXK; TEC family kinase, st	7e-25
1nrv_A	105	Growth factor receptor-bound protein 10; dimer, si	1e-24
1i3z_A	103	EWS/FLI1 activated transcript 2; SH2 domain phosph	2e-24
1blj_A	114	P55 BLK protein tyrosine kinase; signal transducti	2e-24
2y3a_B	302	Phosphatidylinositol 3-kinase regulatory subunit;	5e-24
2oq1_A	254	Tyrosine-protein kinase ZAP-70; tandem SH2 domains	6e-24
2oq1_A	254	Tyrosine-protein kinase ZAP-70; tandem SH2 domains	4e-21
1lkk_A	105	Human P56 tyrosine kinase; complex (tyrosine kinas	8e-23
1aot_F	106	FYN protein-tyrosine kinase; SH2 domain, signal tr	1e-22
3pqz_A	117	Growth factor receptor-bound protein 7; SH2, binds	2e-22
2ge9_A	125	Tyrosine-protein kinase BTK; SH2 domain, structure	2e-22
2aug_A	126	Growth factor receptor-bound protein 14; phosphory	8e-22
2dx0_A	138	Phospholipase C, gamma 2; phosphoric diester hydro	6e-21
3s9k_A	118	Tyrosine-protein kinase ITK/TSK; proline isomeriza	2e-20
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	4e-20
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	2e-14
3gqi_B	226	Phospholipase C-gamma-1; phosphorylated kinase, PY	4e-20
3gqi_B	226	Phospholipase C-gamma-1; phosphorylated kinase, PY	1e-15
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	5e-20
2kno_A	131	Tensin-like C1 domain-containing phosphatase; SH2	5e-20
1a81_A	254	SYK kinase; complex (transferase-peptide), SYK, ki	1e-19
1a81_A	254	SYK kinase; complex (transferase-peptide), SYK, ki	3e-18
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	2e-19
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	5e-19
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	2e-18
3maz_A	125	Signal-transducing adaptor protein 1; modular doma	5e-18
2dvj_A	230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	7e-18
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	8e-17
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	1e-16
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	1e-16
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	2e-15
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	4e-15
2shp_A	525	SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin	1e-13
2shp_A	525	SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin	8e-07
2b3o_A	532	Tyrosine-protein phosphatase, non-receptor type 6;	2e-13
3ps5_A	595	Tyrosine-protein phosphatase non-receptor type 6;	4e-13
4d8k_A	175	Tyrosine-protein kinase LCK; protein kinases, SH2	2e-12
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	4e-12
2el8_A	118	Signal-transducing adaptor protein 2; SH2 domain,	2e-11
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	5e-11
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	8e-08
2cr4_A	126	3BP-2, SH3 domain-binding protein 2; structural ge	3e-07
1uur_A	473	Stata protein, STAT protein; transcription activat	6e-06
3or8_A	197	Transcription elongation factor SPT6; SH2, CTD bin	3e-05

>2iug_A Phosphatidylinositol 3-kinase regulatory alpha subunit; transferase, polymorphism, UBL conjugation, phosphorylation, SH2, PI3K, SH2 domain; 1.89A {Homo sapiens} PDB: 2iuh_A* 2iui_A* 1fu5_A* 1fu6_A 1oo3_A 1oo4_A* 2pna_A 2pnb_A Length = 120

 Score =  116 bits (292), Expect = 3e-35
 Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 5/109 (4%)

Query: 1   MANPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRP-DYSLSLKSARGFMHM 59
           M N   L    WY G ++R E    LR++ +G++LVR++ +    DY+L+L+       +
Sbjct: 2   MNNNMSLQNAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLI 61

Query: 60  KIQRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAE-HMCLLHP 107
           KI      GK+        F SV E+I H+    L     +  + LL+P
Sbjct: 62  KIFH--RDGKYGFSD-PLTFSSVVELINHYRNESLAQYNPKLDVKLLYP 107

>2hdv_A SH2-B PH domain containing signaling mediator 1 gamma isoform; adapter protein, signaling protein; 2.00A {Mus musculus} PDB: 2hdx_A* 1rpy_A 1rqq_C* Length = 111

 Score =  113 bits (286), Expect = 2e-34
 Identities = 25/111 (22%), Positives = 54/111 (48%), Gaps = 8/111 (7%)

Query: 2   ANPKPLDQRNWYHGSVTRHEAENILR---NSNEGSYLVRNSESNRPDYSLSLKSARGFMH 58
            + +PL    W+HG ++R +A  ++      + G +LVR SE+ R +  L+        H
Sbjct: 1   GSDQPLSGYPWFHGMLSRLKAAQLVLEGGTGSHGVFLVRQSETRRGECVLTFNFQGKAKH 60

Query: 59  MKIQRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPIL--GAEHMCLLHP 107
           +++  +   G+  +      F S+ +M++HF  + +P+   G+  + L+  
Sbjct: 61  LRLSLNAA-GQCRVQH--LHFQSIFDMLEHFRVHPIPLESGGSSDVVLVSY 108

>2vif_A Suppressor of cytokine signalling 6; growth regulation, signal transduction inhibitor, KIT regula phosphotyrosine, signaling protein; HET: PTR; 1.45A {Homo sapiens} Length = 141

 Score =  113 bits (284), Expect = 7e-34
 Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 11/117 (9%)

Query: 2   ANPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKI 61
              K L ++ WY G +TR EAE  L N  +GS+LVR+S  +R   SLS +S    +H +I
Sbjct: 16  EELKKLAKQGWYWGPITRWEAEGKLANVPDGSFLVRDSSDDRYLLSLSFRSHGKTLHTRI 75

Query: 62  QRDPDTGKFILGQFSAPFDSVPEMIQHFAEN-----------RLPILGAEHMCLLHP 107
           +       F          S+ ++I+H   +           RLP      + L +P
Sbjct: 76  EHSNGRFSFYEQPDVEGHTSIVDLIEHSIGDSENGAFCYSRSRLPGSATYPVRLTNP 132

>2ecd_A Tyrosine-protein kinase ABL2; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score =  112 bits (282), Expect = 1e-33
 Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 6/102 (5%)

Query: 6   PLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDP 65
            L++ +WYHG V+R  AE +L +   GS+LVR SES+    S+SL+      H +I    
Sbjct: 12  SLEKHSWYHGPVSRSAAEYLLSSLINGSFLVRESESSPGQLSISLRYEGRVYHYRINTTA 71

Query: 66  DTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHP 107
           D GK  +    + F ++ E++ H +             L +P
Sbjct: 72  D-GKVYVTA-ESRFSTLAELVHHHSTVA----DGLVTTLHYP 107

>2kk6_A Proto-oncogene tyrosine-protein kinase FER; methods development, SH2, NESG, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; NMR {Homo sapiens} Length = 116

 Score =  111 bits (280), Expect = 2e-33
 Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 6/106 (5%)

Query: 2   ANPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKI 61
           ++ KPL +++WYHG++ R EA+ +L+   +G +LVR S     +Y LS+ S     H  I
Sbjct: 9   SHMKPLAEQDWYHGAIPRIEAQELLKK--QGDFLVRESHGKPGEYVLSVYSDGQRRHFII 66

Query: 62  QRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHP 107
           Q       +        F ++P++I H    +  I     + LL+P
Sbjct: 67  QYVD--NMYRFEG--TGFSNIPQLIDHHYTTKQVITKKSGVVLLNP 108

>2eob_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 2; SH2, phosphoinositide phospholipase C, PLC-gamma-2, phospholipase C-gamma-2; NMR {Rattus norvegicus} Length = 124

 Score =  111 bits (279), Expect = 3e-33
 Identities = 33/114 (28%), Positives = 63/114 (55%), Gaps = 9/114 (7%)

Query: 1   MANPKPLDQRNWYHGSVTRHEAENILRNSN-EGSYLVRNSESNRPDYSLSLKSARGFMHM 59
           + NP P + + WY+  ++R EAE++L     +G++L+R  E     Y+++ ++     H 
Sbjct: 10  VPNPNPHESKPWYYDRLSRGEAEDMLMRIPRDGAFLIRKREG-TDSYAITFRARGKVKHC 68

Query: 60  KIQRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQLL 113
           +I RD     F+LG  SA F+S+ E++ ++ ++ L       M L +P+  +LL
Sbjct: 69  RINRDG--RHFVLGT-SAYFESLVELVSYYEKHAL----YRKMRLRYPVTPELL 115

>2eo3_A CRK-like protein; phosphorylation, repeat, SH2 domain, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 111

 Score =  109 bits (274), Expect = 1e-32
 Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 8/106 (7%)

Query: 2   ANPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKI 61
           A     D+  WY G V+R EA+  L+    G +LVR+S +   DY LS+       H  I
Sbjct: 11  ARFDSSDRSAWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYII 70

Query: 62  QRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHP 107
              P+  +F +G     FD +P +++ +  + L         L+ P
Sbjct: 71  NSLPN-RRFKIGDQE--FDHLPALLEFYKIHYLDT-----TTLIEP 108

>2gsb_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score =  109 bits (275), Expect = 1e-32
 Identities = 29/110 (26%), Positives = 56/110 (50%), Gaps = 8/110 (7%)

Query: 3   NPKPLDQRNWYHGSVTRHEAENILRNSNE-GSYLVRNSESNRPDYSLSLKSARGFMHMKI 61
              P + + W+HG +++ EA N+L    +  S+LVR S++   DYSL  ++       KI
Sbjct: 9   EEDPHEGKIWFHGKISKQEAYNLLMTVGQVCSFLVRPSDNTPGDYSLYFRTNENIQRFKI 68

Query: 62  QRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQ 111
              P+  +F++G     ++S+ ++I H+ + ++     E   L  P+  Q
Sbjct: 69  CPTPN-NQFMMGG--RYYNSIGDIIDHYRKEQI----VEGYYLKEPVPMQ 111

>2cia_A Cytoplasmic protein NCK2; SH2-domain, SH3 domain, phosphorylation, binding specificity; HET: PTR MPD; 1.45A {Homo sapiens} PDB: 1z3k_A 2ci9_A* 2ci8_A* Length = 102

 Score =  108 bits (272), Expect = 2e-32
 Identities = 37/103 (35%), Positives = 60/103 (58%), Gaps = 8/103 (7%)

Query: 6   PLDQRNWYHGSVTRHEAENILRNSN-EGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRD 64
           PL    WY+G+VTRH+AE  L     EG +L+R+SES+  D+S+SLK++    H K+Q  
Sbjct: 2   PLGSE-WYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQL- 59

Query: 65  PDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHP 107
                + +GQ    F ++ E+++H+ +   PI  +EH   L+ 
Sbjct: 60  -VDNVYCIGQ--RRFHTMDELVEHYKKA--PIFTSEHGEKLYL 97

>3tkz_A Tyrosine-protein phosphatase non-receptor type 11; SH2 domain, protein protein interactions, PTR residues, HYDR peptide complex; HET: PTR; 1.80A {Homo sapiens} PDB: 3tl0_A* 1aya_A* 1ayb_A* 1ayc_A* 1ayd_A Length = 109

 Score =  108 bits (272), Expect = 2e-32
 Identities = 32/104 (30%), Positives = 56/104 (53%), Gaps = 6/104 (5%)

Query: 7   LDQRNWYHGSVTRHEAENILRNSN-EGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDP 65
           +  R W+H ++T  EAEN+L     +GS+L R S+SN  D++LS++      H+KIQ   
Sbjct: 4   MTSRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKIQNTG 63

Query: 66  DTGKFILGQFSAPFDSVPEMIQHFAENR--LPILGAEHMCLLHP 107
           D    + G     F ++ E++Q++ E+   L     + + L +P
Sbjct: 64  D-YYDLYGG--EKFATLAELVQYYMEHHGQLKEKNGDVIELKYP 104

>3k2m_A Proto-oncogene tyrosine-protein kinase ABL1; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_A 3t04_A 1ab2_A Length = 112

 Score =  108 bits (272), Expect = 3e-32
 Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 6/101 (5%)

Query: 7   LDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPD 66
           L++ +WYHG V+R+ AE +L +   GS+LVR SES+    S+SL+      H +I    D
Sbjct: 2   LEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASD 61

Query: 67  TGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHP 107
            GK  +    + F+++ E++ H +             L +P
Sbjct: 62  -GKLYVSS-ESRFNTLAELVHHHSTVA----DGLITTLHYP 96

>1mil_A SHC adaptor protein; SH2 domain, phosphorylation, collagen, growth regulation, transforming protein, alternative initiation; 2.70A {Homo sapiens} SCOP: d.93.1.1 PDB: 1tce_A* Length = 104

 Score =  107 bits (269), Expect = 6e-32
 Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 7/108 (6%)

Query: 6   PLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDP 65
            L    W+HG ++R EAE +L+    G +LVR S +    Y L+   +    H+ +    
Sbjct: 3   QLRGEPWFHGKLSRREAEALLQL--NGDFLVRESTTTPGQYVLTGLQSGQPKHLLLVD-- 58

Query: 66  DTGKFILGQFSAPFDSVPEMIQHFAENRLPIL-GAEHMCLLHPMIEQL 112
             G          F+SV  +I +  +N LPI+     +CL  P+  +L
Sbjct: 59  PEGVVRTKDHR--FESVSHLISYHMDNHLPIISAGSELCLQQPVERKL 104

>2cs0_A Hematopoietic SH2 domain containing; ALX, FLJ14886, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.93.1.1 Length = 119

 Score =  107 bits (268), Expect = 1e-31
 Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 5/110 (4%)

Query: 2   ANPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKI 61
                     W+HG+++R +AEN+L +   GS+L+R S S+   Y+LS K+     H  +
Sbjct: 8   GQLAQDGVPEWFHGAISREDAENLLESQPLGSFLIRVSHSH-VGYTLSYKAQSSCCHFMV 66

Query: 62  QRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQ 111
           +   D G F++        S+  ++    +   PI     + L  P  ++
Sbjct: 67  KLLDD-GTFMIPGEKVAHTSLDALVTFHQQK--PIEPRREL-LTQPCRQK 112

>1wqu_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; SH2 domain, feline sarcoma oncogene, structural genomics; NMR {Homo sapiens} PDB: 2dcr_A Length = 114

 Score =  107 bits (268), Expect = 1e-31
 Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 7/104 (6%)

Query: 4   PKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQR 63
            KPL ++ WYHG++ R E   +L +   G +LVR S+  + +Y LS+       H  IQ 
Sbjct: 10  QKPLHEQLWYHGAIPRAEVAELLVH--SGDFLVRESQG-KQEYVLSVLWDGLPRHFIIQS 66

Query: 64  DPDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHP 107
                 + L      F S+P +I H    + P+     + L   
Sbjct: 67  L--DNLYRLEGEG--FPSIPLLIDHLLSTQQPLTKKSGVVLHRA 106

>2c9w_A Suppressor of cytokine signaling 2; growth regulation, SH2 domain, signal transduction inhibitor nuclear protein; 1.9A {Homo sapiens} SCOP: a.271.1.1 d.93.1.1 Length = 169

 Score =  108 bits (271), Expect = 1e-31
 Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 16/117 (13%)

Query: 5   KPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRD 64
           + L Q  WY GS+T +EA+  L+ + EG++L+R+S  +    ++S+K++ G  +++I+  
Sbjct: 12  RELGQTGWYWGSMTVNEAKEKLKEAPEGTFLIRDSSHSDYLLTISVKTSAGPTNLRIEYQ 71

Query: 65  PDTGKFILGQFSA------PFDSVPEMIQHFAEN--------RLPILGAEHMCLLHP 107
              GKF L            FDSV  +I ++ +           P  G  H+ L  P
Sbjct: 72  D--GKFRLDSIICVKSKLKQFDSVVHLIDYYVQMCKDKRTGPEAPRNGTVHLYLTKP 126

>3ov1_A Growth factor receptor-bound protein 2; GRB2 SH2 domain, phosphotyrosine binding, signaling protein, signaling protein-antagonist complex; HET: PTR; 1.60A {Homo sapiens} PDB: 3imj_A* 3in7_A* 3imd_A* 3kfj_A* 3n8m_A* 3in8_A* 3s8l_A* 3s8n_A* 3s8o_A* 2huy_A* 2h5k_A* 2huw_A* 2h46_E* 3c7i_A* 3n84_A* 1fhs_A 1bm2_A* 1bmb_A* 3ove_A* 1fyr_A* ... Length = 117

 Score =  106 bits (267), Expect = 2e-31
 Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 4/103 (3%)

Query: 6   PLDQRNWYHGSVTRHEAENILRNSNE-GSYLVRNSESNRPDYSLSLKSARGFMHMKIQRD 64
            +    W+ G + R +AE +L      G++L+R SES   D+SLS+K      H K+ RD
Sbjct: 2   EMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRD 61

Query: 65  PDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHP 107
              GK+ L      F+S+ E++ +     +       +  +  
Sbjct: 62  GA-GKYFLWV--VKFNSLNELVDYHRSTSVSRNQQIFLRDIEQ 101

>2dlz_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score =  105 bits (265), Expect = 3e-31
 Identities = 22/107 (20%), Positives = 50/107 (46%), Gaps = 4/107 (3%)

Query: 2   ANPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKI 61
           +         W+ G++ R + +N+L++   G+YL+R   +    +++S+K      H+K+
Sbjct: 8   SREIDYTAYPWFAGNMERQQTDNLLKSHASGTYLIRERPAEAERFAISIKFNDEVKHIKV 67

Query: 62  QRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAE-HMCLLHP 107
               D    I    +  FDS+ E+++++  + L     +    L +P
Sbjct: 68  VEK-DNWIHITE--AKKFDSLLELVEYYQCHSLKESFKQLDTTLKYP 111

>1r1p_A GRB2-related adaptor protein 2; SH2, GADS, phosphopeptide, peptide binding protein; HET: PTR; 1.80A {Mus musculus} SCOP: d.93.1.1 PDB: 1r1q_A* 1r1s_A* Length = 100

 Score =  104 bits (263), Expect = 4e-31
 Identities = 25/103 (24%), Positives = 53/103 (51%), Gaps = 5/103 (4%)

Query: 2   ANPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKI 61
            +   ++   W+H  ++RH+AEN+L   + G +++R S+S+  D+S+S++      H K+
Sbjct: 1   GSFIDIEFPEWFHEGLSRHQAENLLMGKDIGFFIIRASQSSPGDFSISVRHEDDVQHFKV 60

Query: 62  QRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCL 104
            RD   G + L      F S+ +++ ++      I   + + L
Sbjct: 61  MRDTK-GNYFLWTEK--FPSLNKLVDYYRTT--SISKQKQVFL 98

>1jyr_A Growth factor receptor-bound protein 2; receptor binding, regulatory, inhibitor, signaling protein-I complex; HET: PTR; 1.55A {Homo sapiens} SCOP: d.93.1.1 PDB: 1jyq_A* 1jyu_A 1qg1_E* 1x0n_A* 2aob_A* 2aoa_A* 3n7y_A* 1tze_E* 1zfp_E* 3mxc_A* 3mxy_A* 1cj1_A* Length = 96

 Score =  102 bits (256), Expect = 4e-30
 Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 6/94 (6%)

Query: 12  WYHGSVTRHEAENILRNSNE-GSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKF 70
           W+ G + R +AE +L      G++L+R SES   D+SLS+K      H K+ RD   GK+
Sbjct: 5   WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGA-GKY 63

Query: 71  ILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCL 104
            L      F+S+ E++ +       +   + + L
Sbjct: 64  FLWV--VKFNSLNELVDYHRST--SVSRNQQIFL 93

>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A Length = 373

 Score =  106 bits (266), Expect = 4e-29
 Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 5/109 (4%)

Query: 1   MANPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRP-DYSLSLKSARGFMHM 59
           M N   L    WY G ++R E    LR++ +G++LVR++ +    DY+L+L+       +
Sbjct: 1   MNNNMSLQNAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLI 60

Query: 60  KIQRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEH-MCLLHP 107
           KI      GK+        F SV E+I H+    L     +  + LL+P
Sbjct: 61  KIFHRD--GKYGFSD-PLTFSSVVELINHYRNESLAQYNPKLDVKLLYP 106

>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A Length = 373

 Score = 72.9 bits (178), Expect = 1e-16
 Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 3/85 (3%)

Query: 1   MANPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMK 60
             +    D++ W  GS  R++AEN+LR   +G++LVR S S +  Y+ S+       H  
Sbjct: 292 DEDLPHHDEKTWNVGSSNRNKAENLLRGKRDGTFLVRES-SKQGCYACSVVVDGEVKHCV 350

Query: 61  IQRDPDTGKFILGQFSAPFDSVPEM 85
           I +      F   +    + S+ E+
Sbjct: 351 INKTATGYGFA--EPYNLYSSLKEL 373

>2eo6_A B-cell linker protein; SH2, cytoplasmic adapter protein, B-cell adapter containing SH2 domain protein; NMR {Mus musculus} Length = 141

 Score =  100 bits (250), Expect = 1e-28
 Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 11/117 (9%)

Query: 2   ANPKPLDQRNWYHGSVTRHEAENILRNSN-EGSYLVRNSESNRPD--YSLSLKSARGFMH 58
                L  + WY G+  R  AE  L  SN +GS+L+R S  +     Y+L     +   +
Sbjct: 15  DQEAELLGKPWYAGACDRKSAEEALHRSNKDGSFLIRKSSGHDSKQPYTLVAFFNKRVYN 74

Query: 59  MKIQRDPDTGKFILGQFSAP---FDSVPEMIQHFAENRLPILGAEH-----MCLLHP 107
           + ++    T ++ LG+       F SV E++     N L ++ +++       L + 
Sbjct: 75  IPVRFIEATKQYALGKKKNGEEYFGSVVEIVNSHQHNPLVLIDSQNNTKDSTRLKYA 131

>2bbu_A Suppressor of cytokine signaling 3; SH2 domain, extended SH2 subdomain, PEST motif, protein complex, cytokine regulator; HET: PTR; NMR {Mus musculus} Length = 164

 Score =  100 bits (249), Expect = 2e-28
 Identities = 25/109 (22%), Positives = 49/109 (44%), Gaps = 6/109 (5%)

Query: 3   NPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQ 62
             + L +  +Y  +VT  EA  +L     G++L+R+S   R  ++LS+K+  G  +++IQ
Sbjct: 16  AVRKLQESGFYWSAVTGGEANLLLSAEPAGTFLIRDSSDQRHFFTLSVKTQSGTKNLRIQ 75

Query: 63  RDPDTGKF----ILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHP 107
            +  +          Q    FD V +++ H+     P   +  +    P
Sbjct: 76  CEGGSFSLQSDPRSTQPVPRFDCVLKLVHHYMPP--PGTPSFSLPPTEP 122

>2crh_A VAV proto-oncogene; oncoprotein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2ror_A* 2lct_A* Length = 138

 Score = 99.0 bits (247), Expect = 3e-28
 Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 4/107 (3%)

Query: 2   ANPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKI 61
             P+ L    WY G + R  AE+IL N ++G++LVR    +  ++++S+K      H+KI
Sbjct: 18  GPPQDLSVHLWYAGPMERAGAESILANRSDGTFLVRQRVKDAAEFAISIKYNVEVKHIKI 77

Query: 62  QRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAE-HMCLLHP 107
                 G + + +    F  + E+++ + +N L          L  P
Sbjct: 78  MTAE--GLYRITE-KKAFRGLTELVEFYQQNSLKDCFKSLDTTLQFP 121

>2izv_A Suppressor of cytokine signaling 4; signal transduction inhibitor, growth regulation, signal transduction, SH2 domain, nuclear protein; 2.55A {Homo sapiens} SCOP: a.271.1.1 d.93.1.1 Length = 187

 Score = 98.8 bits (246), Expect = 1e-27
 Identities = 18/110 (16%), Positives = 43/110 (39%), Gaps = 7/110 (6%)

Query: 1   MANPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMK 60
           + +   ++    Y G + ++ AE +L    EG++L+R+S      +S+S +     +H +
Sbjct: 25  VPDLLQINNNPCYWGVMDKYAAEALLEGKPEGTFLLRDSAQEDYLFSVSFRRYSRSLHAR 84

Query: 61  IQRDPDTGKFILGQFSA---PFDSVPEMIQHFAENRLPILGAEHMCLLHP 107
           I++      F              +  +++H+ +            L  P
Sbjct: 85  IEQWN--HNFSFDAHDPCVFHSPDITGLLEHYKDP--SACMFFEPLLSTP 130

>2hmh_A Suppressor of cytokine signaling 3; SOCS3, GP130, PTyr, peptide complex, cytokine regulator; HET: PTR; 2.00A {Mus musculus} Length = 152

 Score = 97.7 bits (243), Expect = 1e-27
 Identities = 28/118 (23%), Positives = 55/118 (46%), Gaps = 9/118 (7%)

Query: 2   ANPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKI 61
              + L +  +Y  +VT  EA  +L     G++L+R+S   R  ++LS+K+  G  +++I
Sbjct: 26  NAVRKLQESGFYWSAVTGGEANLLLSAEPAGTFLIRDSSDQRHFFTLSVKTQSGTKNLRI 85

Query: 62  QRDPDTGKFILG------QFSAPFDSVPEMIQHFAENRL-PILGAEHMCLLHPMIEQL 112
           Q +   G F L       Q    FD V +++ H+   +  P    +    ++   E++
Sbjct: 86  QXEG--GSFSLQSDPRSTQPVPRFDXVLKLVHHYMPPQALPGSTPKRAYYIYSGGEKI 141

>1h9o_A Phosphatidylinositol 3-kinase; transferase/receptor, complex (phosphotransferase/receptor), phosphotransferase, SH2 domain; HET: PTR; 1.79A {Homo sapiens} SCOP: d.93.1.1 PDB: 1pic_A* 1bfi_A 1bfj_A 1qad_A Length = 112

 Score = 94.7 bits (236), Expect = 7e-27
 Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 5/111 (4%)

Query: 3   NPKP-LDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKI 61
           +P P  D++ W  GS  R++AEN+LR   +G++LVR S S +  Y+ S+       H  I
Sbjct: 2   SPIPHHDEKTWNVGSSNRNKAENLLRGKRDGTFLVRES-SKQGCYACSVVVDGEVKHCVI 60

Query: 62  QRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAE-HMCLLHPMIEQ 111
            +      F        + S+ E++ H+    L       ++ L +P+  Q
Sbjct: 61  NKTATGYGFAEP--YNLYSSLKELVLHYQHTSLVQHNDSLNVTLAYPVYAQ 109

>2dly_A FYN-related kinase; BRK family kinase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 121

 Score = 95.0 bits (237), Expect = 7e-27
 Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 8/108 (7%)

Query: 2   ANPKPLDQRNWYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLKSARGFMHM 59
           A  + L    W+ G++ R +AE  L  S    G++L+R SES + D+SLS+       H 
Sbjct: 8   AEDRSLQAEPWFFGAIKRADAEKQLLYSENQTGAFLIRESESQKGDFSLSVLDEGVVKHY 67

Query: 60  KIQRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHP 107
           +I+R  D G F L +    F ++ E + ++      +     + L  P
Sbjct: 68  RIRRL-DEGGFFLTR-RKVFSTLNEFVNYYTTTSDGL----CVKLEKP 109

>1d4t_A T cell signal transduction molecule SAP; SH2 domain, tyrosine kinase, signal transduction, peptide recognition, signaling protein; 1.10A {Homo sapiens} SCOP: d.93.1.1 PDB: 1d1z_A 1d4w_A* 1m27_A* Length = 104

 Score = 94.3 bits (235), Expect = 8e-27
 Identities = 23/105 (21%), Positives = 41/105 (39%), Gaps = 8/105 (7%)

Query: 7   LDQRNWYHGSVTRHEAENILRNSN-EGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDP 65
           +D    YHG ++R   E +L  +  +GSYL+R+SES    Y L +         ++ +  
Sbjct: 1   MDAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTE 60

Query: 66  DTGKFILGQFSAP---FDSVPEMIQHFAENRLPILGAEHMCLLHP 107
                           F  +  +I  F +    I+    + L +P
Sbjct: 61  TGSWSAETAPGVHKRYFRKIKNLISAFQKPDQGIV----IPLQYP 101

>1ju5_A CRK; CRK, SH2, SH3, adaptor protein, phosphopeptide, protein binding/transferase complex; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 Length = 109

 Score = 93.4 bits (232), Expect = 2e-26
 Identities = 26/111 (23%), Positives = 43/111 (38%), Gaps = 19/111 (17%)

Query: 11  NWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKF 70
           +WY G ++R EA  +L+    G +LVR+S ++  DY LS+       H  I         
Sbjct: 1   SWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPV 60

Query: 71  ILGQFSAP--------------FDSVPEMIQHFAENRLPILGAEHMCLLHP 107
                  P              FDS+P +++ +  + L         L+ P
Sbjct: 61  PPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDT-----TTLIEP 106

>3us4_A Megakaryocyte-associated tyrosine-protein kinase; SH2 domain, signaling protein, structural genomics, joint CE structural genomics, JCSG; 1.50A {Homo sapiens} PDB: 1jwo_A Length = 98

 Score = 93.0 bits (232), Expect = 2e-26
 Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 7/101 (6%)

Query: 7   LDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPD 66
           L    W+HG ++  EA   L+   +G +LVR S  +  DY L +   R  +H ++    D
Sbjct: 2   LSLMPWFHGKISGQEAVQQLQPPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHR-D 60

Query: 67  TGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHP 107
               I    +  F ++ +M++H+++++  I       L+ P
Sbjct: 61  GHLTIDE--AVFFCNLMDMVEHYSKDKGAI----CTKLVRP 95

>1ka6_A SH2 domain protein 1A; SH2 domain, protein-peptide complex, immune system; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1ka7_A Length = 128

 Score = 93.6 bits (233), Expect = 3e-26
 Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 8/109 (7%)

Query: 7   LDQRNWYHGSVTRHEAENILRNSN-EGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDP 65
           +D    YHG ++R   E +L  +  +GSYL+R+SES    Y L +         ++ +  
Sbjct: 1   MDAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTE 60

Query: 66  DTGKFILGQFSAP---FDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQ 111
                           F  +  +I  F +    I+    + L +P+ ++
Sbjct: 61  TGSWSAETAPGVHKRYFRKIKNLISAFQKPDQGIV----IPLQYPVEKK 105

>1rja_A Tyrosine-protein kinase 6; human protein tyrosine kinase-6 (PTK6/BRK), SRC homology 2(S domain, solution structure, backbone dynamics, transferase; NMR {Homo sapiens} SCOP: d.93.1.1 Length = 100

 Score = 92.2 bits (230), Expect = 4e-26
 Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 8/98 (8%)

Query: 12  WYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGK 69
           W+ G ++R EA   L+      G++L+R SE    DY LS++  +   H KI R    G+
Sbjct: 4   WFFGCISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAG-GR 62

Query: 70  FILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHP 107
             L + +  F S+PE++ +     L    +  + L  P
Sbjct: 63  LHLNE-AVSFLSLPELVNYHRAQSL----SHGLRLAAP 95

>2ekx_A Cytoplasmic tyrosine-protein kinase BMX; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction; NMR {Homo sapiens} Length = 110

 Score = 90.8 bits (226), Expect = 2e-25
 Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 14/113 (12%)

Query: 2   ANPKPLDQRNWYHGSVTRHEAENILRNSN-EGSYLVRNSESNRPDYSLSLKSARGFM--- 57
           +    LD  +W+ G+++R ++E +LR    EG+++VRNS      Y++SL S        
Sbjct: 3   SGSSGLDDYDWFAGNISRSQSEQLLRQKGKEGAFMVRNSSQVG-MYTVSLFSKAVNDKKG 61

Query: 58  ---HMKIQRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHP 107
              H  +  + +  K  L + +  FDS+P++I +   N   ++      L HP
Sbjct: 62  TVKHYHVHTNAE-NKLYLAE-NYCFDSIPKLIHYHQHNSAGMI----TRLRHP 108

>3eaz_A Tyrosine-protein kinase CSK; SH2, disulfide, oxidized reduced, ATP-binding, cell membrane, cytoplasm, membrane, nucleotide-binding, phosphoprotein; 1.31A {Homo sapiens} PDB: 3eac_A Length = 106

 Score = 89.6 bits (223), Expect = 6e-25
 Identities = 24/100 (24%), Positives = 48/100 (48%), Gaps = 7/100 (7%)

Query: 12  WYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFI 71
           W+HG +TR +AE +L     G +LVR S +   DY+L + S     H +I       K  
Sbjct: 10  WFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSSDGKVEHYRIMYHA--SKLS 67

Query: 72  LGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQ 111
           + +    F+++ ++++H+  +   +       L+ P + +
Sbjct: 68  IDE-EVYFENLMQLVEHYTSDADGLC----TRLIKPKVME 102

>2ysx_A Signaling inositol polyphosphate phosphatase SHIP II; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction; NMR {Homo sapiens} Length = 119

 Score = 90.0 bits (224), Expect = 7e-25
 Identities = 24/104 (23%), Positives = 48/104 (46%), Gaps = 8/104 (7%)

Query: 12  WYHGSVTRHEAENILRNSN-EGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKF 70
           W HG++TR +AE +L  +  +GS+LVR SES    Y+L +         +I  + D    
Sbjct: 12  WNHGNITRSKAEELLSRTGKDGSFLVRASESISRAYALCVLYRNCVYTYRILPNEDDKFT 71

Query: 71  ILGQFSAP---FDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQ 111
           +          F  + ++I+ + +  + ++      L +P+  +
Sbjct: 72  VQASEGVSMRFFTKLDQLIEFYKKENMGLV----THLQYPVPLE 111

>2dm0_A Tyrosine-protein kinase TXK; TEC family kinase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 125

 Score = 90.0 bits (224), Expect = 7e-25
 Identities = 28/112 (25%), Positives = 57/112 (50%), Gaps = 14/112 (12%)

Query: 3   NPKPLDQRNWYHGSVTRHEAENILRNSN-EGSYLVRNSESNRPDYSLSLKSA------RG 55
               L+   WYH ++TR++AE++LR  + EG+++VR+S      Y++S+           
Sbjct: 9   KITNLEIYEWYHRNITRNQAEHLLRQESKEGAFIVRDSRH-LGSYTISVFMGARRSTEAA 67

Query: 56  FMHMKIQRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHP 107
             H +I+++   G++ + +    F S+PE+I +   N   ++      L +P
Sbjct: 68  IKHYQIKKNDS-GQWYVAE-RHAFQSIPELIWYHQHNAAGLM----TRLRYP 113

>1nrv_A Growth factor receptor-bound protein 10; dimer, signaling protein; 1.65A {Homo sapiens} SCOP: d.93.1.1 PDB: 3m7f_A Length = 105

 Score = 88.9 bits (221), Expect = 1e-24
 Identities = 23/100 (23%), Positives = 47/100 (47%), Gaps = 8/100 (8%)

Query: 12  WYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTG- 68
           W+HG ++R E+  I++     +G +L+R+S+SN   + L+L   +   + +I    D G 
Sbjct: 7   WFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPCEDDGQ 66

Query: 69  -KFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHP 107
             F L   +  F  + +++  +  N+  +       L H 
Sbjct: 67  TFFSLDDGNTKFSDLIQLVDFYQLNKGVLP----CKLKHH 102

>1i3z_A EWS/FLI1 activated transcript 2; SH2 domain phosphotyrosine signal transduction lymphocyte, signaling protein; HET: PTR; 2.15A {Mus musculus} SCOP: d.93.1.1 Length = 103

 Score = 88.1 bits (219), Expect = 2e-24
 Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 4/85 (4%)

Query: 12 WYHGSVTRHEAENILRNSN-EGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKF 70
          +YHG +T+ E E +L     +G++L+R+SES      L +   +     +I R+      
Sbjct: 5  YYHGCLTKRECEALLLKGGVDGNFLIRDSESVPGALCLCVSFKKLVYSYRIFREKHGYYR 64

Query: 71 ILGQFSAP---FDSVPEMIQHFAEN 92
          I      P   F ++ E++  + + 
Sbjct: 65 IETDAHTPRTIFPNLQELVSKYGKP 89

>1blj_A P55 BLK protein tyrosine kinase; signal transduction, transferase, phosphotransferase, phosphorylation; NMR {Mus musculus} SCOP: d.93.1.1 PDB: 1blk_A Length = 114

 Score = 88.2 bits (219), Expect = 2e-24
 Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 8/97 (8%)

Query: 2  ANPKPLDQRNWYHGSVTRHEAENILRNS--NEGSYLVRNSESNRPDYSLSLKSA----RG 55
          A  + L+   W+  +++R +AE  L       GS+L+R SESN+  +SLS+K        
Sbjct: 4  APVETLEVEKWFFRTISRKDAERQLLAPMNKAGSFLIRESESNKGAFSLSVKDITTQGEV 63

Query: 56 FMHMKIQRDPDTGKFILGQFSAPFDSVPEMIQHFAEN 92
            H KI+   + G + +      F ++  ++QH+++ 
Sbjct: 64 VKHYKIRSLDN-GGYYISP-RITFPTLQALVQHYSKK 98

>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus} Length = 302

 Score = 92.0 bits (228), Expect = 5e-24
 Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 4/107 (3%)

Query: 2   ANPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKI 61
                 ++R WY G + R +AE +L    +G++L+R S S R  Y+ S+       H  I
Sbjct: 186 DALPHHEERTWYVGKINRTQAEEMLSGKRDGTFLIRES-SQRGCYACSVVVDGDTKHCVI 244

Query: 62  QRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMC-LLHP 107
            R   TG      ++  + S+ E++ H+    L          L HP
Sbjct: 245 YRT-ATGFGFAEPYN-LYGSLKELVLHYQHASLVQHNDALTVTLAHP 289

>2oq1_A Tyrosine-protein kinase ZAP-70; tandem SH2 domains, ZAP-70, tyrosine kinase, transferase; HET: PTR; 1.90A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1m61_A Length = 254

 Score = 91.1 bits (226), Expect = 6e-24
 Identities = 22/108 (20%), Positives = 44/108 (40%), Gaps = 4/108 (3%)

Query: 6   PLDQRNWYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLKSARGFMHMKIQR 63
           P     +++GS++R EAE  L+ +   +G +L+R    +   Y LSL     F H  I+R
Sbjct: 2   PAAHLPFFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIER 61

Query: 64  DPDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQ 111
             + G + +           E+ + ++ +   +          P   +
Sbjct: 62  QLN-GTYAIAG-GKAHCGPAELCEFYSRDPDGLPCNLRKPCNRPSGLE 107

>2oq1_A Tyrosine-protein kinase ZAP-70; tandem SH2 domains, ZAP-70, tyrosine kinase, transferase; HET: PTR; 1.90A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1m61_A Length = 254

 Score = 83.4 bits (206), Expect = 4e-21
 Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 5/84 (5%)

Query: 12  WYHGSVTRHEAENILRNS--NEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGK 69
           WYH S+TR EAE  L +    +G +L+R  +     Y+LSL   +   H  I +D   GK
Sbjct: 161 WYHSSLTREEAERKLYSGAQTDGKFLLRPRKEQG-TYALSLIYGKTVYHYLISQDKA-GK 218

Query: 70  FILGQFSAPFDSVPEMIQHFAENR 93
           + + +    FD++ +++++     
Sbjct: 219 YCIPE-GTKFDTLWQLVEYLKLKA 241

>1lkk_A Human P56 tyrosine kinase; complex (tyrosine kinase/peptide); HET: PTR; 1.00A {Homo sapiens} SCOP: d.93.1.1 PDB: 1lcj_A* 1bhf_A* 1bhh_A 1lkl_A* 1bhh_B 1fbz_A* 1ijr_A* 1cwd_L* 1cwe_A* Length = 105

 Score = 84.3 bits (209), Expect = 8e-23
 Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 9/93 (9%)

Query: 7  LDQRNWYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLKSARG-----FMHM 59
          L+   W+  +++R +AE  L       GS+L+R SES    +SLS++           H 
Sbjct: 1  LEPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHY 60

Query: 60 KIQRDPDTGKFILGQFSAPFDSVPEMIQHFAEN 92
          KI+   + G +I  +    F  + E+++H+   
Sbjct: 61 KIRNLDNGGFYISPR--ITFPGLHELVRHYTNA 91

>1aot_F FYN protein-tyrosine kinase; SH2 domain, signal transduction, peptide complex, complex (proto-oncogene/early protein); HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1aou_F* Length = 106

 Score = 83.5 bits (207), Expect = 1e-22
 Identities = 28/108 (25%), Positives = 54/108 (50%), Gaps = 13/108 (12%)

Query: 7   LDQRNWYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLKSARGF-----MHM 59
           +    WY G + R +AE  L +     G++L+R SE+ +  YSLS++           H 
Sbjct: 2   IQAEEWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHY 61

Query: 60  KIQRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHP 107
           KI++  + G +I  +  A F+++ +++QH++E    +       L+ P
Sbjct: 62  KIRKLDNGGYYITTR--AQFETLQQLVQHYSERAAGLS----SRLVVP 103

>3pqz_A Growth factor receptor-bound protein 7; SH2, binds phosphotyrosine, tyrosine kinases, cytoplasmic, P binding; 2.41A {Homo sapiens} PDB: 1mw4_A* 2l4k_A* 2qms_A Length = 117

 Score = 83.5 bits (207), Expect = 2e-22
 Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 12/102 (11%)

Query: 12  WYHGSVTRHEAENIL--RNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGK 69
           W+HG ++R E++ ++  +   +G +LVR S+ N   + LSL   +   H  I    + G+
Sbjct: 16  WFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLILPSEEEGR 75

Query: 70  --FILGQFSAPFDSVPEMIQHFAENR--LPILGAEHMCLLHP 107
             F +      F  + ++++    NR  LP        L H 
Sbjct: 76  LYFSMDDGQTRFTDLLQLVEFHQLNRGILPC------LLRHC 111

>2ge9_A Tyrosine-protein kinase BTK; SH2 domain, structure, transferase; NMR {Homo sapiens} Length = 125

 Score = 83.5 bits (207), Expect = 2e-22
 Identities = 25/111 (22%), Positives = 49/111 (44%), Gaps = 14/111 (12%)

Query: 4   PKPLDQRNWYHGSVTRHEAENILRNSN-EGSYLVRNSESNRPDYSLSLKSARGFM----- 57
              ++   WY   +TR +AE +L+    EG ++VR+S S    Y++S+ +          
Sbjct: 5   EDSIEMYEWYSKHMTRSQAEQLLKQEGKEGGFIVRDS-SKAGKYTVSVFAKSTGDPQGVI 63

Query: 58  -HMKIQRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHP 107
            H  +   P   ++ L +    F ++PE+I +   N   ++      L +P
Sbjct: 64  RHYVVCSTPQ-SQYYLAE-KHLFSTIPELINYHQHNSAGLI----SRLKYP 108

>2aug_A Growth factor receptor-bound protein 14; phosphorylation, SH2 domain, signaling protein; 2.30A {Homo sapiens} Length = 126

 Score = 82.4 bits (204), Expect = 8e-22
 Identities = 22/110 (20%), Positives = 48/110 (43%), Gaps = 8/110 (7%)

Query: 2   ANPKPLDQRNWYHGSVTRHEAENIL--RNSNEGSYLVRNSESNRPDYSLSLKSARGFMHM 59
            +      + W+H  ++R EA+ ++  +   +G +LVR+S+SN   + LS+   +   H 
Sbjct: 18  GSHMIHRSQPWFHHKISRDEAQRLIIQQGLVDGVFLVRDSQSNPKTFVLSMSHGQKIKHF 77

Query: 60  KIQRDPDTGKFILGQFS--APFDSVPEMIQHFAENRLPILGAEHMCLLHP 107
           +I    D G+           F  + ++++ +  N+  +       L H 
Sbjct: 78  QIIPVEDDGEMFHTLDDGHTRFTDLIQLVEFYQLNKGVLP----CKLKHY 123

>2dx0_A Phospholipase C, gamma 2; phosphoric diester hydrolase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.50A {Mus musculus} Length = 138

 Score = 80.3 bits (198), Expect = 6e-21
 Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 11/115 (9%)

Query: 2   ANPKPLDQRNWYHGSV-TRHEAENILR------NSNEGSYLVRNSESNRPDYSLSLKSAR 54
              +      W+H  V +R  AE +L+       + +G++LVR SE+   DY+LS   + 
Sbjct: 14  PPTELHFGEKWFHKKVESRTSAEKLLQEYCAETGAKDGTFLVRESETFPNDYTLSFWRSG 73

Query: 55  GFMHMKIQRDPDTG--KFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHP 107
              H +I+   + G  K+ L   +  F+S+  +IQH+ E  L     E + L  P
Sbjct: 74  RVQHCRIRSTMENGVMKYYLTD-NLTFNSIYALIQHYREAHLRCAEFE-LRLTDP 126

>3s9k_A Tyrosine-protein kinase ITK/TSK; proline isomerization, CIS proline, domain swapped dimer, SH transferase; HET: CIT; 2.35A {Mus musculus} PDB: 2etz_A* 2eu0_A* 1lui_A 1luk_A 1lum_A 1lun_A 2k79_B 2k7a_B Length = 118

 Score = 78.6 bits (194), Expect = 2e-20
 Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 12/117 (10%)

Query: 2   ANPKPLDQRNWYHGSVTRHEAENILRNSN-EGSYLVRNSESNRPDYSLSLKSARGFM--- 57
            +P  L+   WY+ S++R +AE +L ++  EG+++VR+S +    Y++S+ +        
Sbjct: 1   GSPNNLETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDSRTPG-TYTVSVFTKAIISENP 59

Query: 58  ---HMKIQRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQ 111
              H  I+   D+ K         FDS+P +IQ+   N   ++      L +P+   
Sbjct: 60  CIKHYHIKETNDSPKRYYVAEKYVFDSIPLLIQYHQYNGGGLV----TRLRYPVCGS 112

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 83.1 bits (205), Expect = 4e-20
 Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 4/91 (4%)

Query: 4  PKPLDQRNWYHGSVTRHEAENILRNS--NEGSYLVRNSESNRPDYSLSLKSARGFMHMKI 61
          P P     +++GS++R EAE  L+ +   +G +L+R    +   Y LSL     F H  I
Sbjct: 2  PDPAAHLPFFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPI 61

Query: 62 QRDPDTGKFILGQFSAPFDSVPEMIQHFAEN 92
          +R  +    I G          E+ + ++ +
Sbjct: 62 ERQLNGTYAIAG--GKAHCGPAELCEFYSRD 90

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 66.5 bits (162), Expect = 2e-14
 Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 5/94 (5%)

Query: 1   MANPKPLDQRNWYHGSVTRHEAENILRNS--NEGSYLVRNSESNRPDYSLSLKSARGFMH 58
           +      ++  WYH S+TR EAE  L +    +G +L+R  +     Y+LSL   +   H
Sbjct: 152 LIATTAHERMPWYHSSLTREEAERKLYSGAQTDGKFLLRPRKEQ-GTYALSLIYGKTVYH 210

Query: 59  MKIQRDPDTGKFILGQFSAPFDSVPEMIQHFAEN 92
             I +D      I       FD++ +++++    
Sbjct: 211 YLISQDKAGKYCI--PEGTKFDTLWQLVEYLKLK 242

>3gqi_B Phospholipase C-gamma-1; phosphorylated kinase, PY-recognition, tandem SH2 domains, A analog, ATP-binding, craniosynostosis, disease mutation; HET: PTR DVT ACP; 2.50A {Rattus norvegicus} PDB: 2fci_A* 2pld_A* 2ple_A* Length = 226

 Score = 80.3 bits (198), Expect = 4e-20
 Identities = 29/114 (25%), Positives = 60/114 (52%), Gaps = 10/114 (8%)

Query: 1   MANPKPLDQRNWYHGSVTRHEAENILRNSN-EGSYLVRNSESNRPDYSLSLKSARGFMHM 59
           +      + + WYH S+TR +AE++L     +G++LVR   +    Y++S ++     H 
Sbjct: 113 VPQTNAHESKEWYHASLTRAQAEHMLMRVPRDGAFLVRKR-NEPNSYAISFRAEGKIKHC 171

Query: 60  KIQRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQLL 113
           ++Q+  +    +LG   + FDS+ ++I ++ ++ L       M L +P+ E+ L
Sbjct: 172 RVQQ--EGQTVMLGN--SEFDSLVDLISYYEKHPL----YRKMKLRYPINEEAL 217

>3gqi_B Phospholipase C-gamma-1; phosphorylated kinase, PY-recognition, tandem SH2 domains, A analog, ATP-binding, craniosynostosis, disease mutation; HET: PTR DVT ACP; 2.50A {Rattus norvegicus} PDB: 2fci_A* 2pld_A* 2ple_A* Length = 226

 Score = 68.8 bits (168), Expect = 1e-15
 Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 12/95 (12%)

Query: 12  WYHGSVT-----RHEAENILR------NSNEGSYLVRNSESNRPDYSLSLKSARGFMHMK 60
           W+HG +      RH AE +L        + +GS+LVR SE+   DY+LS        H +
Sbjct: 6   WFHGKLGAGRDGRHIAERLLTEYCIETGAPDGSFLVRESETFVGDYTLSFWRNGKVQHCR 65

Query: 61  IQRDPDTGKFILGQFS-APFDSVPEMIQHFAENRL 94
           I    D G           FDS+ ++I H+ +  L
Sbjct: 66  IHSRQDAGTPKFFLTDNLVFDSLYDLITHYQQVPL 100

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 82.5 bits (204), Expect = 5e-20
 Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 2/95 (2%)

Query: 2   ANPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKI 61
                L++ +WYHG V+R+ AE +L +   GS+LVR SES+    S+SL+      H +I
Sbjct: 97  TPVNSLEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRI 156

Query: 62  QRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPI 96
               D   ++     + F+++ E++ H +     +
Sbjct: 157 NTASDGKLYV--SSESRFNTLAELVHHHSTVADGL 189

>2kno_A Tensin-like C1 domain-containing phosphatase; SH2 domain, TENC1, solution structure, cell junctio membrane, hydrolase, membrane, metal-binding; NMR {Homo sapiens} PDB: 2l6k_A Length = 131

 Score = 78.0 bits (192), Expect = 5e-20
 Identities = 21/98 (21%), Positives = 41/98 (41%), Gaps = 15/98 (15%)

Query: 12  WYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFM-------------- 57
           WY   ++R +A  +L++ + G++L+R+S S +  Y L+LK A                  
Sbjct: 22  WYKPHLSRDQAIALLKDKDPGAFLIRDSHSFQGAYGLALKVATPPPSAQPWKGDPVEQLV 81

Query: 58  -HMKIQRDPDTGKFILGQFSAPFDSVPEMIQHFAENRL 94
            H  I+  P   K         F S+  ++   + + +
Sbjct: 82  RHFLIETGPKGVKIKGCPSEPYFGSLSALVSQHSISPI 119

>1a81_A SYK kinase; complex (transferase-peptide), SYK, kinase, SH2 domain; HET: PTR; 3.00A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1csy_A* 1csz_A* Length = 254

 Score = 80.0 bits (197), Expect = 1e-19
 Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 4/83 (4%)

Query: 12 WYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGK 69
          ++ G++TR EAE+ L      +G YL+R S +    ++LS+   R   H  I+R+ +   
Sbjct: 7  FFFGNITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRKAHHYTIERELNGTY 66

Query: 70 FILGQFSAPFDSVPEMIQHFAEN 92
           I G       S  ++  + ++ 
Sbjct: 67 AIAGG--RTHASPADLCHYHSQE 87

>1a81_A SYK kinase; complex (transferase-peptide), SYK, kinase, SH2 domain; HET: PTR; 3.00A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1csy_A* 1csz_A* Length = 254

 Score = 75.7 bits (186), Expect = 3e-18
 Identities = 24/98 (24%), Positives = 48/98 (48%), Gaps = 9/98 (9%)

Query: 12  WYHGSVTRHEAENIL--RNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGK 69
           W+HG ++R E+E I+   +   G +L+R  ++N   Y+L L      +H +I +D   GK
Sbjct: 160 WFHGKISREESEQIVLIGSKTNGKFLIRARDNN-GSYALCLLHEGKVLHYRIDKDKT-GK 217

Query: 70  FILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHP 107
             + +    FD++ ++++H++             L  P
Sbjct: 218 LSIPE-GKKFDTLWQLVEHYSYKA----DGLLRVLTVP 250

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 80.8 bits (200), Expect = 2e-19
 Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 7/104 (6%)

Query: 4   PKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQR 63
            KPL ++ WYHG++ R E   +L   + G +LVR S+  + +Y LS+       H  IQ 
Sbjct: 7   QKPLHEQLWYHGAIPRAEVAELLV--HSGDFLVRESQGKQ-EYVLSVLWDGLPRHFIIQS 63

Query: 64  DPDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHP 107
                 + L      F S+P +I H    + P+     + L   
Sbjct: 64  LD--NLYRLEGEG--FPSIPLLIDHLLSTQQPLTKKSGVVLHRA 103

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A* Length = 303

 Score = 78.9 bits (193), Expect = 5e-19
 Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 3/108 (2%)

Query: 1   MANPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMK 60
            A     D+  WY G V+R EA+  L+    G +LVR+S +   DY LS+       H  
Sbjct: 3   SARFDSSDRSAWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYI 62

Query: 61  IQRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPM 108
           I   P+    I  Q    FD +P +++ +  + L           +P 
Sbjct: 63  INSLPNRRFKIGDQ---EFDHLPALLEFYKIHYLDTTTLIEPAPRYPS 107

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 77.8 bits (192), Expect = 2e-18
 Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 3/93 (3%)

Query: 4   PKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQR 63
              L    W+HG +TR +AE +L     G +LVR S +   DY+L +       H +I  
Sbjct: 74  GTKLSLMPWFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSCEGKVEHYRIMY 133

Query: 64  DPDTGKFILGQFSAPFDSVPEMIQHFAENRLPI 96
                K  + +    F+++ ++++H+  +   +
Sbjct: 134 HA--SKLSIDE-EVYFENLMQLVEHYTTDADGL 163

>3maz_A Signal-transducing adaptor protein 1; modular domain, phosphotyrosine, specificity, cytoplasm, phosphoprotein, SH2 domain, signaling protein; HET: PTR; 1.90A {Homo sapiens} Length = 125

 Score = 72.5 bits (178), Expect = 5e-18
 Identities = 17/91 (18%), Positives = 39/91 (42%), Gaps = 6/91 (6%)

Query: 6  PLDQRNWYHGSVTRHEAENIL-RNSNEGSYLVRNSESNRPDYSLSLKSARG---FMHMKI 61
           L+       +V+R EA  +L +N + G+ ++R   S+  +YS++++         H K+
Sbjct: 11 VLNPMPACFYTVSRKEATEMLQKNPSLGNMILRPG-SDSRNYSITIRQEIDIPRIKHYKV 69

Query: 62 QRDPDTGKFILGQFSAPFDSVPEMIQHFAEN 92
                   I  +      ++  +I +F + 
Sbjct: 70 MSV-GQNYTIELEKPVTLPNLFSVIDYFVKE 99

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A Length = 230

 Score = 74.5 bits (182), Expect = 7e-18
 Identities = 25/124 (20%), Positives = 43/124 (34%), Gaps = 14/124 (11%)

Query: 2   ANPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKI 61
            N    ++ +WY G ++R EA  +L+    G +LVR+S ++  DY LS+       H  I
Sbjct: 5   GNFDSEERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYII 64

Query: 62  QRDPDTGKFILGQFSAP--------------FDSVPEMIQHFAENRLPILGAEHMCLLHP 107
                           P              FDS+P +++ +  + L             
Sbjct: 65  NSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVSRSR 124

Query: 108 MIEQ 111
               
Sbjct: 125 QGSG 128

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 73.6 bits (181), Expect = 8e-17
 Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 9/103 (8%)

Query: 1   MANPKPLDQRNWYHGSVTRHEAENILRNS--NEGSYLVRNSESNRPDYSLSLKSARGFM- 57
           +A    L+   W+   ++R +AE  L       GS+++R+SE+ +  YSLS++       
Sbjct: 61  VARVDSLETEEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQG 120

Query: 58  ----HMKIQRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPI 96
               H KI+   + G +I     + F ++ E++ H+ +    +
Sbjct: 121 DTVKHYKIRTLDNGGFYISP--RSTFSTLQELVDHYKKGNDGL 161

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 72.9 bits (179), Expect = 1e-16
 Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 9/103 (8%)

Query: 1   MANPKPLDQRNWYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLKSARGFM- 57
           +A    +    WY G +TR E+E +L N+    G++LVR SE+ +  Y LS+        
Sbjct: 56  VAPSDSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKG 115

Query: 58  ----HMKIQRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPI 96
               H KI++    G +I       F+S+ +++ +++++   +
Sbjct: 116 LNVKHYKIRKLDSGGFYITS--RTQFNSLQQLVAYYSKHADGL 156

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 72.6 bits (178), Expect = 1e-16
 Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 9/103 (8%)

Query: 1   MANPKPLDQRNWYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLKSARGFM- 57
           +A    +    WY G +TR E+E +L N+    G++LVR SE+ +  Y LS+        
Sbjct: 139 VAPSDSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKG 198

Query: 58  ----HMKIQRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPI 96
               H KI++    G +I       F+S+ +++ +++++   +
Sbjct: 199 LNVKHYKIRKLDSGGFYITS--RTQFNSLQQLVAYYSKHADGL 239

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A Length = 304

 Score = 68.8 bits (167), Expect = 2e-15
 Identities = 25/124 (20%), Positives = 43/124 (34%), Gaps = 14/124 (11%)

Query: 2   ANPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKI 61
            N    ++ +WY G ++R EA  +L+    G +LVR+S ++  DY LS+       H  I
Sbjct: 3   GNFDSEERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYII 62

Query: 62  QRDPDTGKFILGQFSAP--------------FDSVPEMIQHFAENRLPILGAEHMCLLHP 107
                           P              FDS+P +++ +  + L             
Sbjct: 63  NSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVSRSR 122

Query: 108 MIEQ 111
               
Sbjct: 123 QGSG 126

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A Length = 217

 Score = 67.0 bits (163), Expect = 4e-15
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 4/92 (4%)

Query: 2   ANPKPLDQRNWYHGSVTRHEAENILRNSNE-GSYLVRNSESNRPDYSLSLKSARGFMHMK 60
            N   +    W+ G + R +AE +L      G++L+R SES   D+SLS+K      H K
Sbjct: 50  KNYIEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFK 109

Query: 61  IQRDPDTGKFILGQFSAPFDSVPEMIQHFAEN 92
           + RD   GK+ L      F+S+ E++ +    
Sbjct: 110 VLRDGA-GKYFLWVVK--FNSLNELVDYHRST 138

>2shp_A SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin signaling, SH2 protein; HET: CAT; 2.00A {Homo sapiens} SCOP: c.45.1.2 d.93.1.1 d.93.1.1 Length = 525

 Score = 64.1 bits (156), Expect = 1e-13
 Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 4/85 (4%)

Query: 10 RNWYHGSVTRHEAENILR-NSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTG 68
          R W+H ++T  EAEN+L     +GS+L R S+SN  D +LS++      H+KIQ   D  
Sbjct: 4  RRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDLTLSVRRNGAVTHIKIQNTGDYY 63

Query: 69 KFILGQFSAPFDSVPEMIQHFAENR 93
              G+    F ++ E++Q++ E+ 
Sbjct: 64 DLYGGE---KFATLAELVQYYMEHH 85

>2shp_A SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin signaling, SH2 protein; HET: CAT; 2.00A {Homo sapiens} SCOP: c.45.1.2 d.93.1.1 d.93.1.1 Length = 525

 Score = 44.8 bits (106), Expect = 8e-07
 Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 13/101 (12%)

Query: 4   PKPLDQRNWYHGSVTRHEAENILRNSNE-GSYLVRNSESNRPDYSLSLKSARGFMHMKIQ 62
             P  +R W+HG ++  EAE +L    + GS+LVR S+S+  D+ LS++   G    +  
Sbjct: 105 ADPTSER-WFHGHLSGKEAEKLLTEKGKHGSFLVRESQSHPGDFVLSVR--TGDDKGESN 161

Query: 63  RDPDTGKFILGQFSAP---------FDSVPEMIQHFAENRL 94
                   ++ +             FDS+ ++++H+ +N +
Sbjct: 162 DGKSKVTHVMIRCQELKYDVGGGERFDSLTDLVEHYKKNPM 202

>2b3o_A Tyrosine-protein phosphatase, non-receptor type 6; protein tyrosine phosphatase, SHP-1, signaling, hydrolase; 2.80A {Homo sapiens} PDB: 1x6c_A 2rmx_A* 2yu7_A* Length = 532

 Score = 64.1 bits (156), Expect = 2e-13
 Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 4/83 (4%)

Query: 12 WYHGSVTRHEAENILRNS-NEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKF 70
          W+H  ++  +AE +L+     GS+L R S  N+ D+SLS++      H++IQ   D    
Sbjct: 4  WFHRDLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHIRIQNSGDFYDL 63

Query: 71 ILGQFSAPFDSVPEMIQHFAENR 93
            G+    F ++ E+++++ + +
Sbjct: 64 YGGE---KFATLTELVEYYTQQQ 83

>3ps5_A Tyrosine-protein phosphatase non-receptor type 6; SH2, PTP, hydrolase, signaling protein; 3.10A {Homo sapiens} Length = 595

 Score = 63.0 bits (153), Expect = 4e-13
 Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 4/83 (4%)

Query: 12 WYHGSVTRHEAENILRNS-NEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKF 70
          W+H  ++  +AE +L+     GS+L R S  N+ D+SLS++      H++IQ   D    
Sbjct: 4  WFHRDLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHIRIQNSGDFYDL 63

Query: 71 ILGQFSAPFDSVPEMIQHFAENR 93
            G+    F ++ E+++++ + +
Sbjct: 64 YGGE---KFATLTELVEYYTQQQ 83

>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3 domain, structural genomics center for structural genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A* 1x27_A* Length = 175

 Score = 59.7 bits (144), Expect = 2e-12
 Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 9/99 (9%)

Query: 1   MANPKPLDQRNWYHGSVTRHEAENIL--RNSNEGSYLVRNSESNRPDYSLSLK-----SA 53
           +A    L+   W+  +++R +AE  L    +  GS+L+R SES    +SLS++       
Sbjct: 65  VAKANSLEPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQG 124

Query: 54  RGFMHMKIQRDPDTGKFILGQFSAPFDSVPEMIQHFAEN 92
               H KI+   + G +I  +    F  + E+++H+   
Sbjct: 125 EVVKHYKIRNLDNGGFYISPR--ITFPGLHELVRHYTNA 161

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans} Length = 174

 Score = 58.6 bits (141), Expect = 4e-12
 Identities = 21/104 (20%), Positives = 45/104 (43%), Gaps = 10/104 (9%)

Query: 1   MANPKPLDQRNWYHGSVTRHEAENIL--RNSNEGSYLVRNSESNRPDYSLSLKS------ 52
                P + R++Y   ++R EA  +L     + G++L+R+S S   +YSL+++       
Sbjct: 3   TNGFDPFEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRDS-SRPGEYSLTVREADEGNA 61

Query: 53  ARGFMHMKIQRDPDTGKFI-LGQFSAPFDSVPEMIQHFAENRLP 95
              ++  + +   D      +   +  F  +P ++ HF    L 
Sbjct: 62  VCHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLT 105

>2el8_A Signal-transducing adaptor protein 2; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction, structural genomics; NMR {Homo sapiens} Length = 118

 Score = 55.2 bits (132), Expect = 2e-11
 Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 6/86 (6%)

Query: 12  WYHGSVTRHEAENIL-RNSNEGSYLVRNSESNRPDYSLSLK----SARGFMHMKIQRDPD 66
                V+R EA+ +L R    G+ L+R S       S++ +          H K++R+  
Sbjct: 23  SCFLKVSRLEAQLLLERYPECGNLLLRPSGDGADGVSVTTRQMHNGTHVVRHYKVKREGP 82

Query: 67  TGKFILGQFSAPFDSVPEMIQHFAEN 92
               I  +      S+  ++ +F  +
Sbjct: 83  -KYVIDVEQPFSCTSLDAVVNYFVSH 107

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans} Length = 308

 Score = 56.8 bits (136), Expect = 5e-11
 Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 10/99 (10%)

Query: 6   PLDQRNWYHGSVTRHEAENIL--RNSNEGSYLVRNSESNRPDYSLSLKSAR---GFMHMK 60
           P + R++Y   ++R EA  +L     + G++L+R+S S   +YSL+++ A       H  
Sbjct: 37  PFEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRDS-SRPGEYSLTVREADEGNAVCHYL 95

Query: 61  IQRDPDTGKFIL-GQFSA---PFDSVPEMIQHFAENRLP 95
           I+R                   F  +P ++ HF    L 
Sbjct: 96  IERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLT 134

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A Length = 463

 Score = 48.0 bits (114), Expect = 8e-08
 Identities = 21/74 (28%), Positives = 42/74 (56%), Gaps = 6/74 (8%)

Query: 13  YHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFIL 72
           +HG ++R  A+ +L  + EGSYL+R S+     Y+L+L+      + ++  D   GK  +
Sbjct: 54  FHGMISREAADQLLIVA-EGSYLIRESQRQPGTYTLALRFGSQTRNFRLYYD---GKHFV 109

Query: 73  GQFSAPFDSVPEMI 86
           G+    F+S+ +++
Sbjct: 110 GEKR--FESIHDLV 121

>2cr4_A 3BP-2, SH3 domain-binding protein 2; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126

 Score = 44.7 bits (105), Expect = 3e-07
 Identities = 24/112 (21%), Positives = 44/112 (39%), Gaps = 17/112 (15%)

Query: 4   PKPLDQRNWYHGSVTRHEAENILRNSNE------GSYLVRNSESNRPDYSLSLKSARGFM 57
           P P      +  +    E E + + ++       G Y +RNS +      +        +
Sbjct: 14  PLPNS---VFVNTTESCEVERLFKATSPRGEPQDGLYCIRNSSTKSGKVLVVWDETSNKV 70

Query: 58  -HMKI-QRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHP 107
            + +I ++D    KF L      F SV  M++H+  + LP    + + L HP
Sbjct: 71  RNYRIFEKD---SKFYLEG-EVLFVSVGSMVEHYHTHVLP--SHQSLLLRHP 116

>1uur_A Stata protein, STAT protein; transcription activator, SH2, signal transduction, transducer, transcription factor; HET: PTR; 2.7A {Dictyostelium discoideum} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 1uus_A* Length = 473

 Score = 42.3 bits (98), Expect = 6e-06
 Identities = 15/95 (15%), Positives = 33/95 (34%), Gaps = 1/95 (1%)

Query: 2   ANPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKI 61
            +   L Q    +G + R E  + L+N + G++++R SE N   + ++         +K 
Sbjct: 343 RHISTLWQEGIIYGYMGRQEVNDALQNQDPGTFIIRFSERNPGQFGIAYIGVEMPARIKH 402

Query: 62  QR-DPDTGKFILGQFSAPFDSVPEMIQHFAENRLP 95
               P+        F        + +      +  
Sbjct: 403 YLVQPNDTAAAKKTFPDFLSEHSQFVNLLQWTKDT 437

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	113
2kk6_A	116	Proto-oncogene tyrosine-protein kinase FER; method	100.0
3us4_A	98	Megakaryocyte-associated tyrosine-protein kinase;	100.0
2dlz_A	118	Protein VAV-2; RHO family guanine nucleotide excha	100.0
1mil_A	104	SHC adaptor protein; SH2 domain, phosphorylation,	100.0
2iug_A	120	Phosphatidylinositol 3-kinase regulatory alpha sub	99.98
3tkz_A	109	Tyrosine-protein phosphatase non-receptor type 11;	99.98
2eo3_A	111	CRK-like protein; phosphorylation, repeat, SH2 dom	99.98
2lnw_A	122	VAV-2, guanine nucleotide exchange factor VAV2; si	99.98
1d4t_A	104	T cell signal transduction molecule SAP; SH2 domai	99.98
3eaz_A	106	Tyrosine-protein kinase CSK; SH2, disulfide, oxidi	99.98
2hdv_A	111	SH2-B PH domain containing signaling mediator 1 ga	99.98
2ecd_A	119	Tyrosine-protein kinase ABL2; SH2 domain, phosphot	99.98
3k2m_A	112	Proto-oncogene tyrosine-protein kinase ABL1; engin	99.97
1h9o_A	112	Phosphatidylinositol 3-kinase; transferase/recepto	99.97
1rja_A	100	Tyrosine-protein kinase 6; human protein tyrosine	99.97
2gsb_A	119	RAS GTPase-activating protein 1; GAP, RAS P21 prot	99.97
1blj_A	114	P55 BLK protein tyrosine kinase; signal transducti	99.97
2cs0_A	119	Hematopoietic SH2 domain containing; ALX, FLJ14886	99.97
2ysx_A	119	Signaling inositol polyphosphate phosphatase SHIP	99.97
2cia_A	102	Cytoplasmic protein NCK2; SH2-domain, SH3 domain,	99.97
1wqu_A	114	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.97
2dly_A	121	FYN-related kinase; BRK family kinase, structural	99.97
1lkk_A	105	Human P56 tyrosine kinase; complex (tyrosine kinas	99.97
1i3z_A	103	EWS/FLI1 activated transcript 2; SH2 domain phosph	99.97
2eob_A	124	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.97
2ekx_A	110	Cytoplasmic tyrosine-protein kinase BMX; SH2 domai	99.97
3pqz_A	117	Growth factor receptor-bound protein 7; SH2, binds	99.97
1nrv_A	105	Growth factor receptor-bound protein 10; dimer, si	99.97
3ov1_A	117	Growth factor receptor-bound protein 2; GRB2 SH2 d	99.97
2crh_A	138	VAV proto-oncogene; oncoprotein, structural genomi	99.97
3s9k_A	118	Tyrosine-protein kinase ITK/TSK; proline isomeriza	99.97
1ka6_A	128	SH2 domain protein 1A; SH2 domain, protein-peptide	99.97
2ge9_A	125	Tyrosine-protein kinase BTK; SH2 domain, structure	99.97
1jyr_A	96	Growth factor receptor-bound protein 2; receptor b	99.97
1r1p_A	100	GRB2-related adaptor protein 2; SH2, GADS, phospho	99.97
2aug_A	126	Growth factor receptor-bound protein 14; phosphory	99.97
2eo6_A	141	B-cell linker protein; SH2, cytoplasmic adapter pr	99.97
2dx0_A	138	Phospholipase C, gamma 2; phosphoric diester hydro	99.97
1ju5_A	109	CRK; CRK, SH2, SH3, adaptor protein, phosphopeptid	99.97
1aot_F	106	FYN protein-tyrosine kinase; SH2 domain, signal tr	99.97
2vif_A	141	Suppressor of cytokine signalling 6; growth regula	99.97
2dm0_A	125	Tyrosine-protein kinase TXK; TEC family kinase, st	99.97
2c9w_A	169	Suppressor of cytokine signaling 2; growth regulat	99.96
2hmh_A	152	Suppressor of cytokine signaling 3; SOCS3, GP130,	99.96
2kno_A	131	Tensin-like C1 domain-containing phosphatase; SH2	99.96
2izv_A	187	Suppressor of cytokine signaling 4; signal transdu	99.95
2oq1_A	254	Tyrosine-protein kinase ZAP-70; tandem SH2 domains	99.95
2el8_A	118	Signal-transducing adaptor protein 2; SH2 domain,	99.95
3hhm_B	373	NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidil	99.95
3maz_A	125	Signal-transducing adaptor protein 1; modular doma	99.95
4d8k_A	175	Tyrosine-protein kinase LCK; protein kinases, SH2	99.95
2bbu_A	164	Suppressor of cytokine signaling 3; SH2 domain, ex	99.95
2oq1_A	254	Tyrosine-protein kinase ZAP-70; tandem SH2 domains	99.95
1a81_A	254	SYK kinase; complex (transferase-peptide), SYK, ki	99.95
1a81_A	254	SYK kinase; complex (transferase-peptide), SYK, ki	99.95
2y3a_B	302	Phosphatidylinositol 3-kinase regulatory subunit;	99.95
2dvj_A	230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	99.95
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	99.94
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	99.9
4fbn_A	246	1-phosphatidylinositol 4,5-bisphosphate phosphodi	99.94
4fbn_A	246	1-phosphatidylinositol 4,5-bisphosphate phosphodi	99.94
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	99.94
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	99.94
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	99.93
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	99.92
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	99.92
2shp_A	525	SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin	99.92
3ps5_A	595	Tyrosine-protein phosphatase non-receptor type 6;	99.91
2b3o_A	532	Tyrosine-protein phosphatase, non-receptor type 6;	99.91
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	99.91
3ps5_A	595	Tyrosine-protein phosphatase non-receptor type 6;	99.9
2cr4_A	126	3BP-2, SH3 domain-binding protein 2; structural ge	99.9
2shp_A	525	SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin	99.89
2b3o_A	532	Tyrosine-protein phosphatase, non-receptor type 6;	99.88
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.87
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	99.86
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.84
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.84
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	99.84
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.82
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	99.82
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	99.81
3hhm_B	373	NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidil	99.81
2xp1_A	178	SPT6; transcription, IWS1, histone chaperone, mRNA	99.57
3or8_A	197	Transcription elongation factor SPT6; SH2, CTD bin	99.09
1uur_A	473	Stata protein, STAT protein; transcription activat	98.93
2xp1_A	178	SPT6; transcription, IWS1, histone chaperone, mRNA	98.72
1y1u_A	585	Signal transducer and activator of transcription;	98.31
1yvl_A	683	Signal transducer and activator of transcription 1	98.22
1bf5_A	575	Signal transducer and activator of transcription 1	98.01
3or8_A	197	Transcription elongation factor SPT6; SH2, CTD bin	97.94
3bux_B	329	E3 ubiquitin-protein ligase CBL; TKB, signal trans	97.89
3psi_A	1219	Transcription elongation factor SPT6; nucleus; 3.3	97.88
1bg1_A	596	Protein (transcription factor STAT3B); protein-DNA	97.85
3op0_A	323	Signal transduction protein CBL-C; structural geno	97.81
3psi_A	1219	Transcription elongation factor SPT6; nucleus; 3.3	92.37
2di8_A	111	Filamin-B; beta-sandwich, immunoglobulin-like fold	91.45
3rgh_A	100	Filamin-A; cell adhesion, cytoskeleton-complex, di	91.41
2bp3_A	97	Filamin A; structural protein, cytoskeleton/comple	91.17
2eea_A	115	Filamin-B; beta-sandwich, immunoglobulin-like fold	91.04
2k9u_A	119	Gamma filamin; cytoskeletal complex, alternative s	90.96
2w0p_A	94	Filamin-A; alternative splicing, cytoskeleton/comp	90.96
2dia_A	113	Filamin-B; beta-sandwich, immunoglobulin-like fold	90.83
1v05_A	96	Filamin C; actin-binding protein, immunoglobulin;	90.37
2ds4_A	113	Tripartite motif protein 45; beta-sandwich, immuno	89.99
2dic_A	105	Filamin-B; beta-sandwich, immunoglobulin-like fold	89.78
2di7_A	124	BK158_1; beta-sandwich, immunoglobulin-like fold,	89.36
2dj4_A	108	Filamin-B; beta-sandwich, immunoglobulin-like fold	89.2
2dmb_A	124	Filamin-B; beta-sandwich, immunoglobulin-like fold	88.8
2d7o_A	111	Filamin-C; beta-sandwich, immunoglobulin-like fold	88.6
2di9_A	131	Filamin-B; beta-sandwich, immunoglobulin-like fold	88.11
2e9j_A	119	Filamin-B; beta-sandwich, immunoglobulin-like fold	88.08
2ee6_A	105	Filamin-B; beta-sandwich, immunoglobulin-like fold	87.85
3cnk_A	89	Filamin-A; FLNA24, X-RAY crystalography, homodimer	87.72
2d7m_A	115	Filamin-C; beta-sandwich, immunoglobulin-like fold	87.47
2d7n_A	93	Filamin-C; beta-sandwich, immunoglobulin-like fold	86.19
2dib_A	128	Filamin-B; beta-sandwich, immunoglobulin-like fold	85.74
2ee9_A	95	Filamin-B; beta-sandwich, immunoglobulin-like fold	84.93
2dlg_A	102	Filamin-B; beta-sandwich, immunoglobulin-like fold	84.82
2d7p_A	112	Filamin-C; beta-sandwich, immunoglobulin-like fold	83.02
3reb_B	90	Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain	81.55
2eec_A	125	Filamin-B; beta-sandwich, immunoglobulin-like fold	81.43

>2kk6_A Proto-oncogene tyrosine-protein kinase FER; methods development, SH2, NESG, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; NMR {Homo sapiens}

Probab=100.00  E-value=2.1e-32  Score=166.57  Aligned_cols=102  Identities=30%  Similarity=0.577  Sum_probs=93.2

Q ss_pred             CCCCCCCCceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCHH
Q psy12508          4 PKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSVP   83 (113)
Q Consensus         4 ~~~l~~~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl~   83 (113)
                      ...+..++||||.|+|++||++|+  ++|+||||.|++.+|.|+|||+.++.++||+|...+  |.|.+.+  ..|+||.
T Consensus        11 ~~~~~~~~WyhG~isR~eAe~lL~--~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~--g~y~~~~--~~F~sl~   84 (116)
T 2kk6_A           11 MKPLAEQDWYHGAIPRIEAQELLK--KQGDFLVRESHGKPGEYVLSVYSDGQRRHFIIQYVD--NMYRFEG--TGFSNIP   84 (116)
T ss_dssp             CCCTTTCTTEEESCCHHHHHHTCC--STTCEEEEECTTCTTCEEEEEEETTEEEEEEEEEET--TEEESSS--CEESCHH
T ss_pred             ccccccCCCccCCCCHHHHHHHhc--cCCcEEEEECCCCCCcEEEEEEECCeEEEEEEEecC--CEEEECC--CEeCCHH
Confidence            467889999999999999999998  799999999999889999999999999999999754  7888864  7999999


Q ss_pred             HHHHHHhhCCcccCCCcceEecCccccc
Q psy12508         84 EMIQHFAENRLPILGAEHMCLLHPMIEQ  111 (113)
Q Consensus        84 ~lv~~y~~~~~~~~~~~~~~L~~pv~~~  111 (113)
                      +||+||+.+++++....++.|+.||+++
T Consensus        85 eLV~~y~~~~~~i~~~~~~~L~~Pv~r~  112 (116)
T 2kk6_A           85 QLIDHHYTTKQVITKKSGVVLLNPIPKD  112 (116)
T ss_dssp             HHHHHHHHTTCCSCTTTTCCCCSCCCCC
T ss_pred             HHHHHHhhCCCCccCCCCCeECcccCCC
Confidence            9999999999988766788999999987

>3us4_A Megakaryocyte-associated tyrosine-protein kinase; SH2 domain, signaling protein, structural genomics, joint CE structural genomics, JCSG; 1.50A {Homo sapiens} SCOP: d.93.1.1 PDB: 1jwo_A

Probab=100.00  E-value=2.6e-32  Score=161.74  Aligned_cols=98  Identities=23%  Similarity=0.501  Sum_probs=88.0

Q ss_pred             CCCCCCceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCHHHH
Q psy12508          6 PLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSVPEM   85 (113)
Q Consensus         6 ~l~~~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl~~l   85 (113)
                      +++.+|||||.|+|++||++|+..++|+||||.|.+.+|.|+||++.++.++||+|...+  |.|.+.+ ...|+||.+|
T Consensus         1 ~L~~~~Wyhg~isr~~Ae~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~--~~~~~~~-~~~F~sl~~L   77 (98)
T 3us4_A            1 GLSLMPWFHGKISGQEAVQQLQPPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHRD--GHLTIDE-AVFFCNLMDM   77 (98)
T ss_dssp             -CTTCTTBCCSCCHHHHHHHTCSCCTTCEEEEECSSSTTCEEEEEEETTEEEEEEEEEET--TEEESSS-SSEESSHHHH
T ss_pred             CCccCcccCCCCCHHHHHHHccCCCCcEEEEEeCCCCCCcEEEEEEECCceEEEEEEEeC--CEEEECC-CCccCCHHHH
Confidence            478899999999999999999888999999999998899999999999999999999864  7888876 5799999999


Q ss_pred             HHHHhhCCcccCCCcceEecCcccc
Q psy12508         86 IQHFAENRLPILGAEHMCLLHPMIE  110 (113)
Q Consensus        86 v~~y~~~~~~~~~~~~~~L~~pv~~  110 (113)
                      |+||+.++..    ..+.|+.||++
T Consensus        78 v~~y~~~~~~----l~~~L~~P~pk   98 (98)
T 3us4_A           78 VEHYSKDKGA----ICTKLVRPKRK   98 (98)
T ss_dssp             HHHHHHCCTT----SSSCCCSBCCC
T ss_pred             HHHhhhCCCC----CeEcCCccCCC
Confidence            9999999864    45589999875

>2dlz_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=100.00  E-value=2.3e-32  Score=166.93  Aligned_cols=107  Identities=19%  Similarity=0.364  Sum_probs=95.1

Q ss_pred             CCCCCCCCCceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCH
Q psy12508          3 NPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSV   82 (113)
Q Consensus         3 ~~~~l~~~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl   82 (113)
                      +..+++.++||||.|+|++||++|++.++|+||||.|.+.++.|+|||+.++.++||+|...+  |.|.+.+ ...|+||
T Consensus         9 ~~~~l~~~~WyhG~isR~~Ae~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~--g~~~l~~-~~~F~sl   85 (118)
T 2dlz_A            9 REIDYTAYPWFAGNMERQQTDNLLKSHASGTYLIRERPAEAERFAISIKFNDEVKHIKVVEKD--NWIHITE-AKKFDSL   85 (118)
T ss_dssp             CCCCGGGSTTEEESCCHHHHHHHHHHSCTTBEEEECCSCSSCCEEEEEECSSSEEEEEEEEET--TEEESTT-SCCBSSH
T ss_pred             CccccccCCceecCCCHHHHHHHhcCCCCCEEEEEeCCCCCCCEEEEEEECCcEEEEEEEEcC--CEEEEeC-CcccCCH
Confidence            356788999999999999999999877899999999998889999999999999999999864  8899886 4799999


Q ss_pred             HHHHHHHhhCCcccCC-CcceEecCcccccC
Q psy12508         83 PEMIQHFAENRLPILG-AEHMCLLHPMIEQL  112 (113)
Q Consensus        83 ~~lv~~y~~~~~~~~~-~~~~~L~~pv~~~~  112 (113)
                      .+||+||+.+++...+ +..+.|+.||+++.
T Consensus        86 ~~LV~~y~~~~l~~~~~gl~~~L~~Pv~~p~  116 (118)
T 2dlz_A           86 LELVEYYQCHSLKESFKQLDTTLKYPYSGPS  116 (118)
T ss_dssp             HHHHHHHTTSCTTTTCTTCCCCCCBCCSCCC
T ss_pred             HHHHHHHhhCcccccCCCcccEeCCcCCCCC
Confidence            9999999999886653 34589999999875

>1mil_A SHC adaptor protein; SH2 domain, phosphorylation, collagen, growth regulation, transforming protein, alternative initiation; 2.70A {Homo sapiens} SCOP: d.93.1.1 PDB: 1tce_A*

Probab=100.00  E-value=9.4e-33  Score=165.28  Aligned_cols=103  Identities=30%  Similarity=0.571  Sum_probs=91.5

Q ss_pred             CCCCCCCCceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCHH
Q psy12508          4 PKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSVP   83 (113)
Q Consensus         4 ~~~l~~~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl~   83 (113)
                      +++++.++||||.|+|++||++|+  ++|+||||.|.+.+|.|+||++.++.++||+|.. . +|.|.+.+  ..|+||.
T Consensus         1 ~~~l~~~~Wyhg~isR~~Ae~lL~--~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~-~-~g~~~~~~--~~F~sl~   74 (104)
T 1mil_A            1 GSQLRGEPWFHGKLSRREAEALLQ--LNGDFLVRESTTTPGQYVLTGLQSGQPKHLLLVD-P-EGVVRTKD--HRFESVS   74 (104)
T ss_dssp             CCSTTTCTTBCSSCCHHHHHTTCC--STTEEEEEECCSSCSSEEEEEEETTEEEEEEEBC-T-TSSEECSS--CEESSHH
T ss_pred             CCccccCCcCCCCCCHHHHHHHhc--cCCcEEEEeCCCCCCCEEEEEEECCEEEEEEEEe-C-CCEEEECC--ceeCCHH
Confidence            357899999999999999999998  7999999999988899999999999999999974 3 58888865  7999999


Q ss_pred             HHHHHHhhCCcccCC-CcceEecCcccccC
Q psy12508         84 EMIQHFAENRLPILG-AEHMCLLHPMIEQL  112 (113)
Q Consensus        84 ~lv~~y~~~~~~~~~-~~~~~L~~pv~~~~  112 (113)
                      +||+||+.+++++.. +..+.|+.||++++
T Consensus        75 ~LI~~y~~~~~p~~~~g~~~~L~~Pv~r~~  104 (104)
T 1mil_A           75 HLISYHMDNHLPIISAGSELCLQQPVERKL  104 (104)
T ss_dssp             HHHHHHHHHTCCEEETTEEECCCEECCCCC
T ss_pred             HHHHHHhhCCCccccCCceEEeCccCCCCC
Confidence            999999999987653 35688999999874

>2iug_A Phosphatidylinositol 3-kinase regulatory alpha subunit; transferase, polymorphism, UBL conjugation, phosphorylation, SH2, PI3K, SH2 domain; 1.89A {Homo sapiens} PDB: 2iuh_A* 2iui_A* 1fu5_A* 1fu6_A 1oo3_A 1oo4_A* 2pna_A 2pnb_A

Probab=99.98  E-value=1.2e-32  Score=168.65  Aligned_cols=109  Identities=29%  Similarity=0.557  Sum_probs=94.7

Q ss_pred             CCCCCCCCCCCceeecCCHHHHHHHhcCCCCceEEEEecCCC-CCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCC
Q psy12508          1 MANPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESN-RPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPF   79 (113)
Q Consensus         1 ~~~~~~l~~~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~-~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F   79 (113)
                      |....+++.++||||.|+|++||++|+..++|+||||.|.+. ++.|+||++.++.++||+|...+  |.|.+.+ ...|
T Consensus         2 ~~~~~~l~~~~WyhG~isR~eAe~lL~~~~~G~FLVR~S~~~~~g~y~LSv~~~~~v~H~~I~~~~--g~~~l~~-~~~F   78 (120)
T 2iug_A            2 MNNNMSLQNAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHRD--GKYGFSD-PLTF   78 (120)
T ss_dssp             --CCHHHHTCTTBCCSCCHHHHHHHHTTCCTTEEEEEECSSGGGCSEEEEEEETTEEEEEEEEEET--TEEESSS-SCCB
T ss_pred             CCcccccccCCccccCCCHHHHHHHhcCCCCcEEEEECCCCCCCCcEEEEEEECCEEEEEEEEEcC--CEEEECC-CCcc
Confidence            344567888999999999999999998888999999999987 89999999999999999999864  8898876 4799


Q ss_pred             CCHHHHHHHHhhCCcccCC-CcceEecCcccccC
Q psy12508         80 DSVPEMIQHFAENRLPILG-AEHMCLLHPMIEQL  112 (113)
Q Consensus        80 ~sl~~lv~~y~~~~~~~~~-~~~~~L~~pv~~~~  112 (113)
                      +||.+||+||+.++++... +..+.|+.||+++.
T Consensus        79 ~sl~~LI~~y~~~~~~~~~~~l~~~L~~Pv~r~~  112 (120)
T 2iug_A           79 SSVVELINHYRNESLAQYNPKLDVKLLYPVSKYQ  112 (120)
T ss_dssp             SSHHHHHHHHHHSCGGGTCGGGCCCCCEECCTTT
T ss_pred             CCHHHHHHHHHhCccccccCCcceeeCCcCCcCc
Confidence            9999999999999987542 35689999999763

>3tkz_A Tyrosine-protein phosphatase non-receptor type 11; SH2 domain, protein protein interactions, PTR residues, HYDR peptide complex; HET: PTR; 1.80A {Homo sapiens} PDB: 3tl0_A* 1aya_A* 1ayb_A* 1ayc_A* 1ayd_A

Probab=99.98  E-value=2.4e-32  Score=164.75  Aligned_cols=104  Identities=29%  Similarity=0.480  Sum_probs=86.6

Q ss_pred             CCCCCCCceeecCCHHHHHHHhcC-CCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCHH
Q psy12508          5 KPLDQRNWYHGSVTRHEAENILRN-SNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSVP   83 (113)
Q Consensus         5 ~~l~~~~w~~g~i~r~~ae~lL~~-~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl~   83 (113)
                      +.++.++||||.|+|++||++|++ +++|+||||.|.+.+|.|+||++.++.++||+|...+  +.|.+.+ ...|+||.
T Consensus         2 ~~l~~~~Wyhg~isr~~Ae~lL~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~--~~~~~~~-~~~F~sl~   78 (109)
T 3tkz_A            2 SHMTSRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKIQNTG--DYYDLYG-GEKFATLA   78 (109)
T ss_dssp             -----CCSBCTTCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEEEETTEEEEEEEEECS--SCEESSS-SCCBSSHH
T ss_pred             CccccCCceecCCCHHHHHHHHhcCCCCCEEEEEecCCCCCCEEEEEEECCEEEEEEEEeCC--CEEEecC-CcccCCHH
Confidence            457889999999999999999976 5899999999998899999999999999999998753  7787765 47899999


Q ss_pred             HHHHHHhhCCcccC--CCcceEecCccccc
Q psy12508         84 EMIQHFAENRLPIL--GAEHMCLLHPMIEQ  111 (113)
Q Consensus        84 ~lv~~y~~~~~~~~--~~~~~~L~~pv~~~  111 (113)
                      +||+||+.+++++.  ++..+.|+.||+++
T Consensus        79 ~LV~~y~~~~~~l~~~~gl~~~L~~Pv~~~  108 (109)
T 3tkz_A           79 ELVQYYMEHHGQLKEKNGDVIELKYPLNCA  108 (109)
T ss_dssp             HHHHHHHHSTTSEEETTSCBCCCCEECC--
T ss_pred             HHHHHHHhCcCccccCCCceEECCCcccCC
Confidence            99999999997765  44568999999986

>2eo3_A CRK-like protein; phosphorylation, repeat, SH2 domain, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.98  E-value=2.9e-32  Score=164.88  Aligned_cols=100  Identities=29%  Similarity=0.551  Sum_probs=90.0

Q ss_pred             CCCCCCCCCceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCH
Q psy12508          3 NPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSV   82 (113)
Q Consensus         3 ~~~~l~~~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl   82 (113)
                      +...++.++||||.|+|++||++|+..++|+||||.|.+.+|.|+|||+.++.++||+|.... +|.|.+.+  ..|+||
T Consensus        12 n~v~~~~~~Wyhg~isR~~Ae~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~-~g~~~l~~--~~F~sl   88 (111)
T 2eo3_A           12 RFDSSDRSAWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLP-NRRFKIGD--QEFDHL   88 (111)
T ss_dssp             CCCTTCHHHHEEESCCHHHHHHHHSSCCTTCEEEEECSSSSSCEEEEEEETTEEEEEEEEEET-TTEEEETT--CCBSSH
T ss_pred             cccccCCCCcccCCCCHHHHHHHhcCCCCceEEEEeecCCCCCEEEEEEeCCeEEEEEEEEcC-CCCEEECC--cccCCH
Confidence            446778889999999999999999878999999999999889999999999999999999865 58899975  799999


Q ss_pred             HHHHHHHhhCCcccCCCcceEecCcccc
Q psy12508         83 PEMIQHFAENRLPILGAEHMCLLHPMIE  110 (113)
Q Consensus        83 ~~lv~~y~~~~~~~~~~~~~~L~~pv~~  110 (113)
                      .+||+||+.+++.     .+.|+.||+|
T Consensus        89 ~~LV~~y~~~~l~-----~~~L~~Pv~r  111 (111)
T 2eo3_A           89 PALLEFYKIHYLD-----TTTLIEPAPR  111 (111)
T ss_dssp             HHHHHHHTTSCSS-----SSCCCCBCCC
T ss_pred             HHHHHHHhhCCCC-----CccCCCcCcC
Confidence            9999999999875     4689999986

>2lnw_A VAV-2, guanine nucleotide exchange factor VAV2; signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2lnx_A

Probab=99.98  E-value=5.1e-32  Score=166.19  Aligned_cols=106  Identities=19%  Similarity=0.395  Sum_probs=93.8

Q ss_pred             CCCCCCCCCceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCH
Q psy12508          3 NPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSV   82 (113)
Q Consensus         3 ~~~~l~~~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl   82 (113)
                      +..+++.++||||.|+|++||++|...++|+||||.|.+.+|.|+|||+.++.++||+|...+  +.|.+.+ ...|+||
T Consensus        15 ~~~~l~~~~WyhG~isR~eAe~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~--~~~~l~~-~~~F~sl   91 (122)
T 2lnw_A           15 REIDYTAYPWFAGNMERQQTDNLLKSHASGTYLIRERPAEAERFAISIKFNDEVKHIKVVEKD--NWIHITE-AKKFDSL   91 (122)
T ss_dssp             SCCCSTTSTTBCCSCCHHHHHHHHHHSCTTBEEEEECCCSSEEEEEEEECSSCEEEEEEEEET--TEEESSS-SCCBSSH
T ss_pred             ccCCcccCcCCCcCCCHHHHHHHhcCCCCCeEEEEeCCCCCCcEEEEEEeCCcEEEEEEEEcC--CEEEECC-CCeECCH
Confidence            456899999999999999999999877899999999998889999999999999999999865  7788876 5899999


Q ss_pred             HHHHHHHhhCCcccC-CCcceEecCccccc
Q psy12508         83 PEMIQHFAENRLPIL-GAEHMCLLHPMIEQ  111 (113)
Q Consensus        83 ~~lv~~y~~~~~~~~-~~~~~~L~~pv~~~  111 (113)
                      .+||+||+.+++... ++..+.|+.||+++
T Consensus        92 ~eLV~~y~~~~l~~~~~~l~~~L~~P~~~p  121 (122)
T 2lnw_A           92 LELVEYYQCHSLKESFKQLDTTLKYPYKSR  121 (122)
T ss_dssp             HHHHHHHHHSCGGGTCTTCCCCCCBCSSSC
T ss_pred             HHHHHHHhhCcCcccCCCcCeeeCCcCCCC
Confidence            999999999988653 33457899999875

>1d4t_A T cell signal transduction molecule SAP; SH2 domain, tyrosine kinase, signal transduction, peptide recognition, signaling protein; 1.10A {Homo sapiens} SCOP: d.93.1.1 PDB: 1d1z_A 1d4w_A* 1m27_A*

Probab=99.98  E-value=7.4e-32  Score=161.36  Aligned_cols=99  Identities=24%  Similarity=0.374  Sum_probs=87.3

Q ss_pred             CCCCCceeecCCHHHHHHHhcC-CCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECc----CCCCCCC
Q psy12508          7 LDQRNWYHGSVTRHEAENILRN-SNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQ----FSAPFDS   81 (113)
Q Consensus         7 l~~~~w~~g~i~r~~ae~lL~~-~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~----~~~~F~s   81 (113)
                      ++.++||||.|+|++||++|++ +++|+||||.|++.+|.|+||++.++.++||+|.+.+ +|.|.+.+    ....|+|
T Consensus         1 l~~~~Wyhg~isR~~Ae~lL~~~~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~-~g~~~l~~~~g~~~~~F~s   79 (104)
T 1d4t_A            1 MDAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTE-TGSWSAETAPGVHKRYFRK   79 (104)
T ss_dssp             CTTCTTBCCSCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEEEETTEEEEEEEEECT-TSCEEECBCTTSCCCCBSS
T ss_pred             CCCCceEccCCCHHHHHHHHHhcCCCCEEEEeeCCCCCCCEEEEEEECCeEEEEEEEECC-CCeEEEeccCCCCCcccCC
Confidence            5788999999999999999975 5899999999998889999999999999999999865 68899984    2479999


Q ss_pred             HHHHHHHHhhCCcccCCCcceEecCcccc
Q psy12508         82 VPEMIQHFAENRLPILGAEHMCLLHPMIE  110 (113)
Q Consensus        82 l~~lv~~y~~~~~~~~~~~~~~L~~pv~~  110 (113)
                      |.+||+||+.++..    ..+.|+.||+|
T Consensus        80 l~~LV~~y~~~~~~----l~~~L~~P~~r  104 (104)
T 1d4t_A           80 IKNLISAFQKPDQG----IVIPLQYPVEK  104 (104)
T ss_dssp             HHHHHHHHTSSSSS----SSSCCCEECCC
T ss_pred             HHHHHHHHhhCCCC----CeEECCCcCCC
Confidence            99999999999764    35689999875

>3eaz_A Tyrosine-protein kinase CSK; SH2, disulfide, oxidized reduced, ATP-binding, cell membrane, cytoplasm, membrane, nucleotide-binding, phosphoprotein; 1.31A {Homo sapiens} PDB: 3eac_A

Probab=99.98  E-value=7.9e-32  Score=161.72  Aligned_cols=101  Identities=25%  Similarity=0.484  Sum_probs=90.6

Q ss_pred             CCCCCCCCceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCHH
Q psy12508          4 PKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSVP   83 (113)
Q Consensus         4 ~~~l~~~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl~   83 (113)
                      +..++.+|||||.|+|++||++|+..++|+||||.|.+.+|.|+||++.++.++||+|...+  |.|.+.+ ...|+||.
T Consensus         2 d~~L~~~~Wyhg~isr~~Ae~lL~~~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~--g~~~l~~-~~~F~sl~   78 (106)
T 3eaz_A            2 GTKLSLMPWFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSSDGKVEHYRIMYHA--SKLSIDE-EVYFENLM   78 (106)
T ss_dssp             CCTGGGCTTBCCSCCHHHHHHHTCSCCTTEEEEEECTTSTTCEEEEEEETTEEEEEECEEET--TEEESSS-SSCBSSHH
T ss_pred             CcccccCCCcCCCCCHHHHHHHhCCCCCCEEEEEECCCCCCcEEEEEEeCCceEEEEEEecC--CEEEECC-CCccCCHH
Confidence            35688999999999999999999888999999999998899999999999999999999764  8899986 57999999


Q ss_pred             HHHHHHhhCCcccCCCcceEecCccccc
Q psy12508         84 EMIQHFAENRLPILGAEHMCLLHPMIEQ  111 (113)
Q Consensus        84 ~lv~~y~~~~~~~~~~~~~~L~~pv~~~  111 (113)
                      +||+||+.++..    ..+.|+.||+++
T Consensus        79 ~Lv~~y~~~~~g----l~~~L~~P~~~~  102 (106)
T 3eaz_A           79 QLVEHYTSDADG----LCTRLIKPKVME  102 (106)
T ss_dssp             HHHHHHHHCCTT----SSSCCCEECCCC
T ss_pred             HHHHHHhhCCCC----CCeecCCcCCCC
Confidence            999999999764    455899999875

>2hdv_A SH2-B PH domain containing signaling mediator 1 gamma isoform; adapter protein, signaling protein; 2.00A {Mus musculus} PDB: 2hdx_A* 1rpy_A 1rqq_C*

Probab=99.98  E-value=4.8e-32  Score=163.91  Aligned_cols=103  Identities=23%  Similarity=0.508  Sum_probs=89.9

Q ss_pred             CCCCCCCCceeecCCHHHHHHHhcCC---CCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCC
Q psy12508          4 PKPLDQRNWYHGSVTRHEAENILRNS---NEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFD   80 (113)
Q Consensus         4 ~~~l~~~~w~~g~i~r~~ae~lL~~~---~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~   80 (113)
                      +.+++.++||||.|+|++||++|++.   ++|+||||.|++.+|.|+||++.++.++||+|.+.. +|.|.+.+  ..|+
T Consensus         3 ~~~l~~~~WyhG~isR~~Ae~lL~~~g~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~-~g~~~l~~--~~F~   79 (111)
T 2hdv_A            3 DQPLSGYPWFHGMLSRLKAAQLVLEGGTGSHGVFLVRQSETRRGECVLTFNFQGKAKHLRLSLNA-AGQCRVQH--LHFQ   79 (111)
T ss_dssp             CCCGGGSTTEEEECCHHHHHHHHHTTGGGGTTEEEEEECSSCTTEEEEEEEETTEEEEEEEEECT-TCCEEETT--EEES
T ss_pred             CcccccCCCcCCCCCHHHHHHHHHHcCCCCCCeEEEEecCCCCCCEEEEEEeCCeEEEEEEEEcC-CCCEEeCC--ceeC
Confidence            56888999999999999999999864   899999999999899999999999999999999865 58899874  7999


Q ss_pred             CHHHHHHHHhhCCcccCCC--cceEecCccc
Q psy12508         81 SVPEMIQHFAENRLPILGA--EHMCLLHPMI  109 (113)
Q Consensus        81 sl~~lv~~y~~~~~~~~~~--~~~~L~~pv~  109 (113)
                      ||.+||+||+.+++++...  ..+.|+.||+
T Consensus        80 sl~~LV~~y~~~~l~~~~~~~~~v~L~~~v~  110 (111)
T 2hdv_A           80 SIFDMLEHFRVHPIPLESGGSSDVVLVSYVP  110 (111)
T ss_dssp             SHHHHHHHHTTSCCC-------CCCCCEECC
T ss_pred             CHHHHHHHHhhCCcccccCCccceEcccccc
Confidence            9999999999999988643  4789998886

>2ecd_A Tyrosine-protein kinase ABL2; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.98  E-value=5e-32  Score=165.62  Aligned_cols=104  Identities=29%  Similarity=0.470  Sum_probs=92.5

Q ss_pred             CCCCCCCCCCceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCC
Q psy12508          2 ANPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDS   81 (113)
Q Consensus         2 ~~~~~l~~~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~s   81 (113)
                      |+..+++.++||||.|+|++||++|+..++|+||||.|.+.+|.|+|||+.++.++||+|.... +|.|++.+ ...|+|
T Consensus         8 ap~~~l~~~~WyhG~isR~~Ae~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~-~g~~~l~~-~~~F~s   85 (119)
T 2ecd_A            8 TPVNSLEKHSWYHGPVSRSAAEYLLSSLINGSFLVRESESSPGQLSISLRYEGRVYHYRINTTA-DGKVYVTA-ESRFST   85 (119)
T ss_dssp             CSSCCCCCSSSEEEECCHHHHHHHHHTSCTTBEEEEEESSSTTEEEEEEECSSCEEEECCCCCS-SSCCCCCS-SCCCSS
T ss_pred             ccccccccCccccCCCCHHHHHHHhcCCCCCeEEEEeCCCCCCCEEEEEEECCeEEEEEEEEcC-CCCEEEcC-CCcCCC
Confidence            6678899999999999999999999888899999999998899999999999999999999865 57777765 479999


Q ss_pred             HHHHHHHHhhCCcccCCCcceEecCccccc
Q psy12508         82 VPEMIQHFAENRLPILGAEHMCLLHPMIEQ  111 (113)
Q Consensus        82 l~~lv~~y~~~~~~~~~~~~~~L~~pv~~~  111 (113)
                      |.+||+||+.+...    ..+.|+.||+++
T Consensus        86 l~~LV~~y~~~~~g----l~~~L~~P~~~~  111 (119)
T 2ecd_A           86 LAELVHHHSTVADG----LVTTLHYPAPKC  111 (119)
T ss_dssp             HHHHHHHHHHCCTT----SSSCCCBCCSSC
T ss_pred             HHHHHHHHhhCCCC----CceECCCccCCC
Confidence            99999999998653    456899999885

>3k2m_A Proto-oncogene tyrosine-protein kinase ABL1; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_A 3t04_A 1ab2_A

Probab=99.97  E-value=1.3e-31  Score=162.24  Aligned_cols=100  Identities=30%  Similarity=0.529  Sum_probs=88.6

Q ss_pred             CCCCCCceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCHHHH
Q psy12508          6 PLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSVPEM   85 (113)
Q Consensus         6 ~l~~~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl~~l   85 (113)
                      +++.++||||.|+|++||++|+.+++|+||||.|.+.+|.|+||++.+++++||+|.+.+ +|.|++.+ ...|+||.+|
T Consensus         1 sL~~~~Wyhg~isR~~Ae~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~-~g~~~~~~-~~~F~sl~~L   78 (112)
T 3k2m_A            1 SLEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTAS-DGKLYVSS-ESRFNTLAEL   78 (112)
T ss_dssp             CGGGSTTEEESCCHHHHHHHTTTCCTTEEEEEECSSSTTCEEEEEEETTEEEEEEEEECT-TSCEESST-TCCBSSHHHH
T ss_pred             CCccCcceeeCCCHHHHHHHhccCCCceEEEEeCCCCCCCEEEEEEeCCcEEEEEEEECC-CCcEEECC-CCeECCHHHH
Confidence            467899999999999999999888899999999998899999999999999999999876 58888876 4799999999


Q ss_pred             HHHHhhCCcccCCCcceEecCccccc
Q psy12508         86 IQHFAENRLPILGAEHMCLLHPMIEQ  111 (113)
Q Consensus        86 v~~y~~~~~~~~~~~~~~L~~pv~~~  111 (113)
                      |+||+.++..    ..+.|+.||++.
T Consensus        79 V~~y~~~~~~----l~~~L~~P~~~~  100 (112)
T 3k2m_A           79 VHHHSTVADG----LITTLHYPAPKR  100 (112)
T ss_dssp             HHHHHHCCTT----SSSCCCEECCCC
T ss_pred             HHHHhhCCCC----CccCCCCCCCCC
Confidence            9999998654    455788888773

>1h9o_A Phosphatidylinositol 3-kinase; transferase/receptor, complex (phosphotransferase/receptor), phosphotransferase, SH2 domain; HET: PTR; 1.79A {Homo sapiens} SCOP: d.93.1.1 PDB: 1pic_A* 1bfi_A 1bfj_A 1qad_A

Probab=99.97  E-value=9.7e-32  Score=162.79  Aligned_cols=105  Identities=28%  Similarity=0.461  Sum_probs=89.6

Q ss_pred             CCCCCCCceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCHHH
Q psy12508          5 KPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSVPE   84 (113)
Q Consensus         5 ~~l~~~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl~~   84 (113)
                      ..++.++||||.|+|++||++|...++|+||||.| +.++.|+|||+.++.++||+|...+ +| |.+.+....|+||.+
T Consensus         5 ~~~~~~~Wyhg~isR~~Ae~lL~~~~~G~FLVR~S-~~~g~y~LSv~~~~~v~H~~I~~~~-~g-~~~~~~~~~F~sl~~   81 (112)
T 1h9o_A            5 PHHDEKTWNVGSSNRNKAENLLRGKRDGTFLVRES-SKQGCYACSVVVDGEVKHCVINKTA-TG-YGFAEPYNLYSSLKE   81 (112)
T ss_dssp             GGGSGGGTBCCSCCHHHHHHHHTTCCTTEEEEEEC-SSTTCEEEEEEETTEEEEEEEEEET-TE-EESSTTCCCBSSHHH
T ss_pred             ccccCCCcccCCCCHHHHHHHhcCCCCceEEEeec-CCCCCEEEEEEECCEEEEEEEEEcC-Cc-eEEeCCCCCcCCHHH
Confidence            46788999999999999999998779999999999 7789999999999999999999876 44 555443579999999


Q ss_pred             HHHHHhhCCcccC-CCcceEecCcccccC
Q psy12508         85 MIQHFAENRLPIL-GAEHMCLLHPMIEQL  112 (113)
Q Consensus        85 lv~~y~~~~~~~~-~~~~~~L~~pv~~~~  112 (113)
                      ||+||++++++.. ++..+.|+.||+++.
T Consensus        82 LV~~y~~~~l~~~~~gl~~~L~~P~~~~~  110 (112)
T 1h9o_A           82 LVLHYQHTSLVQHNDSLNVTLAYPVYAQQ  110 (112)
T ss_dssp             HHHHHHHSCGGGTCTTCCCCCCEETTC--
T ss_pred             HHHHHhhCcccccCCCcCeeCCCCcCCCC
Confidence            9999999988764 345789999999864

>1rja_A Tyrosine-protein kinase 6; human protein tyrosine kinase-6 (PTK6/BRK), SRC homology 2(S domain, solution structure, backbone dynamics, transferase; NMR {Homo sapiens} SCOP: d.93.1.1

Probab=99.97  E-value=5.7e-32  Score=160.83  Aligned_cols=97  Identities=29%  Similarity=0.539  Sum_probs=87.5

Q ss_pred             CCCceeecCCHHHHHHHhcC--CCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCHHHHH
Q psy12508          9 QRNWYHGSVTRHEAENILRN--SNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSVPEMI   86 (113)
Q Consensus         9 ~~~w~~g~i~r~~ae~lL~~--~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl~~lv   86 (113)
                      .++||||.|+|++||++|++  .++|+||||.|++.+|.|+||++.++.++||+|...+ +|.|.+.+ ...|+||.+||
T Consensus         1 ~~~Wyhg~isR~~Ae~lL~~~g~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~-~g~~~l~~-~~~F~sl~~LV   78 (100)
T 1rja_A            1 SEPWFFGCISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRA-GGRLHLNE-AVSFLSLPELV   78 (100)
T ss_dssp             CCCCBCTTCCHHHHHHHHSSTTCSSCCEEEEECSSSSSCEEEEECTTSSCEEEEEEECS-SSCEEEET-TEEESSHHHHH
T ss_pred             CCCcccCCCCHHHHHHHHhccCCCCCEEEEEeCCCCCCCEEEEEEECCEEEEEEEEEcC-CCcEEECC-CCccCCHHHHH
Confidence            47999999999999999987  5899999999998889999999999999999999865 58888876 57999999999


Q ss_pred             HHHhhCCcccCCCcceEecCccccc
Q psy12508         87 QHFAENRLPILGAEHMCLLHPMIEQ  111 (113)
Q Consensus        87 ~~y~~~~~~~~~~~~~~L~~pv~~~  111 (113)
                      +||+.+++.+    .+.|+.||+++
T Consensus        79 ~~y~~~~~~l----~~~L~~p~~~~   99 (100)
T 1rja_A           79 NYHRAQSLSH----GLRLAAPCRKH   99 (100)
T ss_dssp             HHHHHCCTTS----SSCCCSBCCCC
T ss_pred             HHHhhCCCCC----CCCCCccCCCC
Confidence            9999998854    56899999986

>2gsb_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.97  E-value=4e-32  Score=166.04  Aligned_cols=104  Identities=28%  Similarity=0.569  Sum_probs=92.5

Q ss_pred             CCCCCCCCCCceeecCCHHHHHHHhcC-CCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCC
Q psy12508          2 ANPKPLDQRNWYHGSVTRHEAENILRN-SNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFD   80 (113)
Q Consensus         2 ~~~~~l~~~~w~~g~i~r~~ae~lL~~-~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~   80 (113)
                      +..+.++.++||||.|+|++||++|++ +++|+||||.|.+.+|.|+|||+.++.++||+|...+ +|.|.+.+  ..|+
T Consensus         8 ~~~~~l~~~~WyhG~isR~~Ae~lL~~~g~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~-~g~~~l~~--~~F~   84 (119)
T 2gsb_A            8 REEDPHEGKIWFHGKISKQEAYNLLMTVGQVCSFLVRPSDNTPGDYSLYFRTNENIQRFKICPTP-NNQFMMGG--RYYN   84 (119)
T ss_dssp             SCCCSGGGCSSBCCSSCHHHHHHHHHHTCCSSEEEEEECSSSTTCEEEEEECSSCBCCCCEEEET-TTEEEESS--CCBS
T ss_pred             CCCcccccCCcccCCCCHHHHHHHHhhcCCCCeEEEEeCCCCCCceEEEEEECCEEEEEEEEEcC-CCCEEECC--cccC
Confidence            345788899999999999999999986 5889999999999889999999999999999999875 58899875  7999


Q ss_pred             CHHHHHHHHhhCCcccCCCcceEecCcccccC
Q psy12508         81 SVPEMIQHFAENRLPILGAEHMCLLHPMIEQL  112 (113)
Q Consensus        81 sl~~lv~~y~~~~~~~~~~~~~~L~~pv~~~~  112 (113)
                      ||.+||+||+.+++.    ..+.|+.||+++.
T Consensus        85 sl~~LI~~y~~~~l~----~~~~L~~Pv~~~~  112 (119)
T 2gsb_A           85 SIGDIIDHYRKEQIV----EGYYLKEPVPMQD  112 (119)
T ss_dssp             CHHHHHHHHTTSCSB----TTBCCCCCCCCCC
T ss_pred             CHHHHHHHHhhCccC----CCCEeCCccCCCC
Confidence            999999999999874    4578999999853

>1blj_A P55 BLK protein tyrosine kinase; signal transduction, transferase, phosphotransferase, phosphorylation; NMR {Mus musculus} SCOP: d.93.1.1 PDB: 1blk_A

Probab=99.97  E-value=5.6e-32  Score=164.25  Aligned_cols=106  Identities=26%  Similarity=0.496  Sum_probs=93.1

Q ss_pred             CCCCCCCCCCCceeecCCHHHHHHHhcC--CCCceEEEEecCCCCCcEEEEEEe----CCeeEEEEEEecCCCCcEEECc
Q psy12508          1 MANPKPLDQRNWYHGSVTRHEAENILRN--SNEGSYLVRNSESNRPDYSLSLKS----ARGFMHMKIQRDPDTGKFILGQ   74 (113)
Q Consensus         1 ~~~~~~l~~~~w~~g~i~r~~ae~lL~~--~~~G~FLvR~s~~~~~~~~Lsv~~----~~~v~h~~I~~~~~~~~~~~~~   74 (113)
                      .|+.+.++.++||||.|+|++||++|++  .++|+||||.|.+.+|.|+|||+.    ++.++||+|...+ +|.|++.+
T Consensus         3 va~~~~l~~~~Wyhg~isR~~Ae~lL~~~g~~~G~FLVR~S~~~~g~y~LSv~~~~~~~~~v~H~~I~~~~-~g~~~l~~   81 (114)
T 1blj_A            3 VAPVETLEVEKWFFRTISRKDAERQLLAPMNKAGSFLIRESESNKGAFSLSVKDITTQGEVVKHYKIRSLD-NGGYYISP   81 (114)
T ss_dssp             CCSSCCSCCSSSBCCSCCHHHHHHHHSSTTCCTTCEEBCBCTTCSSCEEEEECBCCTTTCBCCCEEEEEET-TTEEEEET
T ss_pred             cCccCccccCCccCCCCCHHHHHHHHhhCCCCCceEEEEeCCCCCCCEEEEEEEecCCCCcEEEEEEEEcC-CCCEEECC
Confidence            3678899999999999999999999975  489999999999989999999998    5789999999875 57788875


Q ss_pred             CCCCCCCHHHHHHHHhhCCcccCCCcceEecCcccccC
Q psy12508         75 FSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQL  112 (113)
Q Consensus        75 ~~~~F~sl~~lv~~y~~~~~~~~~~~~~~L~~pv~~~~  112 (113)
                       ...|+||.+||+||+.++..+    .+.|+.||+++.
T Consensus        82 -~~~F~sl~~LV~~y~~~~~~l----~~~L~~p~~~~~  114 (114)
T 1blj_A           82 -RITFPTLQALVQHYSKKGDGL----CQKLTLPCVNLA  114 (114)
T ss_dssp             -TEEESSHHHHHHHHHHCCSSS----SSCCCCCSCCCC
T ss_pred             -CcccCCHHHHHHHhhhCCCCC----ceecCccCCCCC
Confidence             479999999999999997754    458999999864

>2cs0_A Hematopoietic SH2 domain containing; ALX, FLJ14886, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.93.1.1

Probab=99.97  E-value=1.7e-31  Score=163.24  Aligned_cols=104  Identities=23%  Similarity=0.401  Sum_probs=91.0

Q ss_pred             CCCCCCCCceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCHH
Q psy12508          4 PKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSVP   83 (113)
Q Consensus         4 ~~~l~~~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl~   83 (113)
                      ..+++.++||||.|+|++||++|+..++|+||||.|.+.++ |+|||+.++.++||+|...+ +|.|.+.+....|+||.
T Consensus        10 ~~~~~~~~WyhG~isR~~Ae~lL~~~~~G~FLVR~S~~~~~-y~LSv~~~~~v~H~~I~~~~-~g~~~l~~~~~~F~sl~   87 (119)
T 2cs0_A           10 LAQDGVPEWFHGAISREDAENLLESQPLGSFLIRVSHSHVG-YTLSYKAQSSCCHFMVKLLD-DGTFMIPGEKVAHTSLD   87 (119)
T ss_dssp             CCSSSCCSSBCSSCCHHHHHHHHHTSCTTCEEEEECSSSSS-EEEEECCSSSCEEEEEEECT-TSCEECTTCSCCBSSHH
T ss_pred             hccccCCCccccCCCHHHHHHHhcCCCCCEEEEEecCCCCC-EEEEEEECCEEEEEEEEEcC-CCcEEEecCCCcCCCHH
Confidence            35678899999999999999999888899999999998887 99999999999999999875 57898875457999999


Q ss_pred             HHHHHHhhCCcccCCCcceEecCcccccC
Q psy12508         84 EMIQHFAENRLPILGAEHMCLLHPMIEQL  112 (113)
Q Consensus        84 ~lv~~y~~~~~~~~~~~~~~L~~pv~~~~  112 (113)
                      +||+||+.+++...   ++.|+.||+++.
T Consensus        88 eLV~~y~~~~l~~~---~~~L~~P~~~~~  113 (119)
T 2cs0_A           88 ALVTFHQQKPIEPR---RELLTQPCRQKD  113 (119)
T ss_dssp             HHHHHHTTSCCSSC---CCCCCSBCCCSS
T ss_pred             HHHHHHhhCcCCCC---CCEeCccCCCCC
Confidence            99999999987522   368999999854

>2ysx_A Signaling inositol polyphosphate phosphatase SHIP II; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction; NMR {Homo sapiens}

Probab=99.97  E-value=2.3e-31  Score=162.73  Aligned_cols=104  Identities=24%  Similarity=0.367  Sum_probs=91.7

Q ss_pred             CCCCCCCCCceeecCCHHHHHHHhcC-CCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcC----CC
Q psy12508          3 NPKPLDQRNWYHGSVTRHEAENILRN-SNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQF----SA   77 (113)
Q Consensus         3 ~~~~l~~~~w~~g~i~r~~ae~lL~~-~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~----~~   77 (113)
                      +..+++.++||||.|+|++||++|+. +++|+||||.|.+.+|.|+|||+.++.++||+|.+.. +|.|.+.+.    ..
T Consensus         3 ~~~~~~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~-~g~~~l~~~~g~~~~   81 (119)
T 2ysx_A            3 SGSSGMVPCWNHGNITRSKAEELLSRTGKDGSFLVRASESISRAYALCVLYRNCVYTYRILPNE-DDKFTVQASEGVSMR   81 (119)
T ss_dssp             CCCSSCCCSSEEESCCHHHHHHHHHHHCCTTEEEEEECSSCTTSEEEEEECSSCEEEEEEEECT-TSCEEECCSCSSSCC
T ss_pred             CccCCCCCccccCCCCHHHHHHHHhhcCCCCEEEEEeCCCCCCCEEEEEEECCEEEEEEEEEcC-CCCEEEeccCCcCCc
Confidence            44678899999999999999999986 7899999999999889999999999999999999865 588998852    36


Q ss_pred             CCCCHHHHHHHHhhCCcccCCCcceEecCccccc
Q psy12508         78 PFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQ  111 (113)
Q Consensus        78 ~F~sl~~lv~~y~~~~~~~~~~~~~~L~~pv~~~  111 (113)
                      .|+||.+||+||+.+++.    ..+.|+.||+++
T Consensus        82 ~F~sl~eLV~~y~~~~~~----l~~~L~~P~~~~  111 (119)
T 2ysx_A           82 FFTKLDQLIEFYKKENMG----LVTHLQYPVPLE  111 (119)
T ss_dssp             CBSSHHHHHHHTTSSSSS----SSSCCCEECCCC
T ss_pred             ccCCHHHHHHHHhhCCCC----CCeECCCcCCCC
Confidence            899999999999999874    456899999875

>2cia_A Cytoplasmic protein NCK2; SH2-domain, SH3 domain, phosphorylation, binding specificity; HET: PTR MPD; 1.45A {Homo sapiens} PDB: 1z3k_A 2ci9_A* 2ci8_A*

Probab=99.97  E-value=5.8e-32  Score=161.32  Aligned_cols=99  Identities=32%  Similarity=0.567  Sum_probs=86.5

Q ss_pred             CCCCCceeecCCHHHHHHHhc-CCCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCHHHH
Q psy12508          7 LDQRNWYHGSVTRHEAENILR-NSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSVPEM   85 (113)
Q Consensus         7 l~~~~w~~g~i~r~~ae~lL~-~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl~~l   85 (113)
                      .+.++||||.|+|++||++|+ .+++|+||||.|++.+|.|+|||+.++.++||+|...  +|.|.+.+  ..|+||.+|
T Consensus         2 p~~~~Wyhg~isR~~Ae~lL~~~~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~--~g~~~l~~--~~F~sl~~L   77 (102)
T 2cia_A            2 PLGSEWYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQLV--DNVYCIGQ--RRFHTMDEL   77 (102)
T ss_dssp             ---CTTBCCSCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEECCSSSCEEEEEEEE--TTEEEETT--EEESSHHHH
T ss_pred             CcCCccccCCCCHHHHHHHHhhCCCCcEEEEEECCCCCCCEEEEEEeCCeeEEEEEEec--CCEEEECC--cCcCCHHHH
Confidence            467899999999999999995 4689999999999988999999999999999999954  48899986  799999999


Q ss_pred             HHHHhhCCcccC-CCcceEecCccc
Q psy12508         86 IQHFAENRLPIL-GAEHMCLLHPMI  109 (113)
Q Consensus        86 v~~y~~~~~~~~-~~~~~~L~~pv~  109 (113)
                      |+||+.+++... ++..+.|++||+
T Consensus        78 V~~y~~~~l~~~~~~~~~~L~~Pip  102 (102)
T 2cia_A           78 VEHYKKAPIFTSEHGEKLYLVRALQ  102 (102)
T ss_dssp             HHHHHHSCSEECTTSCEECCCEECC
T ss_pred             HHHHhhCccccCCCCceEEeCCCCC
Confidence            999999998765 456789999985

>1wqu_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; SH2 domain, feline sarcoma oncogene, structural genomics; NMR {Homo sapiens} PDB: 2dcr_A

Probab=99.97  E-value=5.7e-32  Score=164.28  Aligned_cols=102  Identities=28%  Similarity=0.487  Sum_probs=91.9

Q ss_pred             CCCCCCCCceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCHH
Q psy12508          4 PKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSVP   83 (113)
Q Consensus         4 ~~~l~~~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl~   83 (113)
                      ...++.++||||.|+|++||++|+  ++|+||||.|.+.+ .|+||++.++.++||+|...+  |.|.+.+  ..|+||.
T Consensus        10 ~~~l~~~~WyhG~isR~eAe~lL~--~~G~FLVR~S~~~~-~y~LSv~~~~~v~H~~I~~~~--g~~~~~~--~~F~sl~   82 (114)
T 1wqu_A           10 QKPLHEQLWYHGAIPRAEVAELLV--HSGDFLVRESQGKQ-EYVLSVLWDGLPRHFIIQSLD--NLYRLEG--EGFPSIP   82 (114)
T ss_dssp             GSCGGGCTTEEESCCHHHHHTTCC--STTEEEEEECSSSC-CEEEEEEETTEEEEEECEECS--SSEESSS--CCBSSHH
T ss_pred             ccccccCCcEeeCCCHHHHHHHhc--cCCeEEEEEcCCCC-CEEEEEEECCEEEEEEEEecC--CEEEECC--CCCCCHH
Confidence            457888999999999999999998  79999999999877 999999999999999998764  7888875  7999999


Q ss_pred             HHHHHHhhCCcccCCCcceEecCcccccC
Q psy12508         84 EMIQHFAENRLPILGAEHMCLLHPMIEQL  112 (113)
Q Consensus        84 ~lv~~y~~~~~~~~~~~~~~L~~pv~~~~  112 (113)
                      +||+||+.+.+++.....+.|+.||+++.
T Consensus        83 ~LV~~y~~~~~~~~~~~~~~L~~Pv~r~~  111 (114)
T 1wqu_A           83 LLIDHLLSTQQPLTKKSGVVLHRAVPSGP  111 (114)
T ss_dssp             HHHHHHHHHCCCSCTTTCCCCCEECCSCT
T ss_pred             HHHHHHHHCCCCcCCCCCcEECcccCCCC
Confidence            99999999988876666789999999874

>2dly_A FYN-related kinase; BRK family kinase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.97  E-value=1.6e-31  Score=163.85  Aligned_cols=104  Identities=27%  Similarity=0.510  Sum_probs=91.0

Q ss_pred             CCCCCCCCCCceeecCCHHHHHHHhcC--CCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCC
Q psy12508          2 ANPKPLDQRNWYHGSVTRHEAENILRN--SNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPF   79 (113)
Q Consensus         2 ~~~~~l~~~~w~~g~i~r~~ae~lL~~--~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F   79 (113)
                      |+..+++.++||||.|+|++||++|.+  .++|+||||.|.+.+|.|+|||+.++.++||+|.... +|.|++.+ ...|
T Consensus         8 ~~~~~l~~~~WyhG~isR~eAe~lL~~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~-~g~~~l~~-~~~F   85 (121)
T 2dly_A            8 AEDRSLQAEPWFFGAIKRADAEKQLLYSENQTGAFLIRESESQKGDFSLSVLDEGVVKHYRIRRLD-EGGFFLTR-RKVF   85 (121)
T ss_dssp             CSSGGGGGCSSBCSSCCHHHHHHHHTSSSCCTTCEEEEECSSSSSCEEEEEESSSCEEEEEEEECS-SSCEEEET-TEEE
T ss_pred             ccccccCcCCccccCCCHHHHHHHHhcCCCCCCEEEEEcCCCCCCceEEEEEECCeEEEEEEEEcC-CCCEEECC-CCcc
Confidence            445678889999999999999999975  4789999999998889999999999999999999865 57888875 4799


Q ss_pred             CCHHHHHHHHhhCCcccCCCcceEecCccccc
Q psy12508         80 DSVPEMIQHFAENRLPILGAEHMCLLHPMIEQ  111 (113)
Q Consensus        80 ~sl~~lv~~y~~~~~~~~~~~~~~L~~pv~~~  111 (113)
                      +||.+||+||+.+++.+    .+.|+.||+++
T Consensus        86 ~sl~eLV~~y~~~~~~l----~~~L~~P~~~~  113 (121)
T 2dly_A           86 STLNEFVNYYTTTSDGL----CVKLEKPCLKI  113 (121)
T ss_dssp             SSHHHHHHHHTTCCSSS----SSCCCSBCCCC
T ss_pred             CCHHHHHHHHhhCCCCC----ceeCCeecCCC
Confidence            99999999999998754    45899999885

>1lkk_A Human P56 tyrosine kinase; complex (tyrosine kinase/peptide); HET: PTR; 1.00A {Homo sapiens} SCOP: d.93.1.1 PDB: 1lcj_A* 1bhf_A* 1bhh_A 1lkl_A* 1bhh_B 1fbz_A* 1ijr_A* 1cwd_L* 1cwe_A*

Probab=99.97  E-value=4.2e-31  Score=158.29  Aligned_cols=98  Identities=27%  Similarity=0.502  Sum_probs=86.0

Q ss_pred             CCCCCceeecCCHHHHHHHhcC--CCCceEEEEecCCCCCcEEEEEEe-----CCeeEEEEEEecCCCCcEEECcCCCCC
Q psy12508          7 LDQRNWYHGSVTRHEAENILRN--SNEGSYLVRNSESNRPDYSLSLKS-----ARGFMHMKIQRDPDTGKFILGQFSAPF   79 (113)
Q Consensus         7 l~~~~w~~g~i~r~~ae~lL~~--~~~G~FLvR~s~~~~~~~~Lsv~~-----~~~v~h~~I~~~~~~~~~~~~~~~~~F   79 (113)
                      ++.++||||.|+|++||++|..  .++|+||||.|++.+|.|+|||+.     ++.++||+|...+ +|.|.+.+ ...|
T Consensus         1 l~~~~Wyhg~isR~~Ae~lL~~~~~~~G~FLVR~S~~~~g~~~LSv~~~~~~~~~~v~H~~I~~~~-~g~~~l~~-~~~F   78 (105)
T 1lkk_A            1 LEPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLD-NGGFYISP-RITF   78 (105)
T ss_dssp             CCCCTTBCTTCCHHHHHHHHTSTTCCTTCEEEEECSSSTTCEEEEEEEEETTTEEEEEEEEEEECT-TSCEESST-TSCB
T ss_pred             CCcCceecCCCCHHHHHHHHHhcCCCCceEEEEECCCCCCcEEEEEEEcccCCCCcEEEEEEEECC-CCCEEECC-Ccee
Confidence            5788999999999999999974  489999999999888999999998     5789999999875 57888876 4799


Q ss_pred             CCHHHHHHHHhhCCcccCCCcceEecCcccc
Q psy12508         80 DSVPEMIQHFAENRLPILGAEHMCLLHPMIE  110 (113)
Q Consensus        80 ~sl~~lv~~y~~~~~~~~~~~~~~L~~pv~~  110 (113)
                      +||.+||+||+.++..+    .+.|+.||++
T Consensus        79 ~sl~~LI~~y~~~~~~l----~~~L~~P~~~  105 (105)
T 1lkk_A           79 PGLHELVRHYTNASDGL----CTRLSRPCQT  105 (105)
T ss_dssp             SSHHHHHHHHHHCCTTS----SSCCCSBCCC
T ss_pred             CCHHHHHHHHhhCCCCC----ccCCcCcCCC
Confidence            99999999999998754    4589999874

>1i3z_A EWS/FLI1 activated transcript 2; SH2 domain phosphotyrosine signal transduction lymphocyte, signaling protein; HET: PTR; 2.15A {Mus musculus} SCOP: d.93.1.1

Probab=99.97  E-value=2.4e-31  Score=158.85  Aligned_cols=97  Identities=22%  Similarity=0.414  Sum_probs=85.3

Q ss_pred             CCCceeecCCHHHHHHHhcC-CCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECc----CCCCCCCHH
Q psy12508          9 QRNWYHGSVTRHEAENILRN-SNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQ----FSAPFDSVP   83 (113)
Q Consensus         9 ~~~w~~g~i~r~~ae~lL~~-~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~----~~~~F~sl~   83 (113)
                      +++||||.|+|++||++|++ +++|+||||.|++.+|.|+||++.++.++||+|.+.+ +|.|.+.+    ....|+||.
T Consensus         2 ~~~Wyhg~isR~~Ae~lL~~~~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~-~g~~~l~~~~g~~~~~F~sl~   80 (103)
T 1i3z_A            2 DLPYYHGCLTKRECEALLLKGGVDGNFLIRDSESVPGALCLCVSFKKLVYSYRIFREK-HGYYRIETDAHTPRTIFPNLQ   80 (103)
T ss_dssp             CCTTEESSCCHHHHHHHHHTTCSTTEEEEEECSSSTTCEEEEEECSSSEEEEEEEECT-TSCEEECBCTTSCCCEESSSH
T ss_pred             CCccccCCCCHHHHHHHHhhcCCCceEEEEeCCCCCCCEEEEEEECCEEEEEEEEECC-CCeEEEeccCCCCCcccCCHH
Confidence            57999999999999999985 6899999999998889999999999999999999865 68899874    247899999


Q ss_pred             HHHHHHhhCCcccCCCcceEecCcccc
Q psy12508         84 EMIQHFAENRLPILGAEHMCLLHPMIE  110 (113)
Q Consensus        84 ~lv~~y~~~~~~~~~~~~~~L~~pv~~  110 (113)
                      +||+||+.++..    ..+.|+.||+|
T Consensus        81 ~LV~~y~~~~~~----l~~~L~~P~~R  103 (103)
T 1i3z_A           81 ELVSKYGKPGQG----LVVHLSNPIMR  103 (103)
T ss_dssp             HHHHHTTSSSSS----SSSCCCEECC-
T ss_pred             HHHHHHhhCCCC----CeEEcCCccCC
Confidence            999999988653    45689999986

>2eob_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 2; SH2, phosphoinositide phospholipase C, PLC-gamma-2, phospholipase C-gamma-2; NMR {Rattus norvegicus}

Probab=99.97  E-value=1.7e-31  Score=164.27  Aligned_cols=103  Identities=31%  Similarity=0.638  Sum_probs=90.6

Q ss_pred             CCCCCCCCCCceeecCCHHHHHHHhcCC-CCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCC
Q psy12508          2 ANPKPLDQRNWYHGSVTRHEAENILRNS-NEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFD   80 (113)
Q Consensus         2 ~~~~~l~~~~w~~g~i~r~~ae~lL~~~-~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~   80 (113)
                      |+...++.++||||.|+|++||++|++. ++|+||||.|. .++.|+|||+.++.++||+|...+  +.|.+.. ...|+
T Consensus        11 a~~~~l~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S~-~~g~y~LSv~~~~~v~H~~I~~~~--~~~~~~~-~~~F~   86 (124)
T 2eob_A           11 PNPNPHESKPWYYDRLSRGEAEDMLMRIPRDGAFLIRKRE-GTDSYAITFRARGKVKHCRINRDG--RHFVLGT-SAYFE   86 (124)
T ss_dssp             CCSCSTTTSTTEESSCCHHHHHHHHHHCCSSSEEEEECCT-TSSCEEEEEEETTEEEEEEEEESS--SCEESSS-SCCBS
T ss_pred             CCccccCcCCCeecCCCHHHHHHHHhcCCCCCEEEEEecC-CCCCEEEEEEeCCeEEEEEEEECC--CEEEECC-CCcCC
Confidence            4567889999999999999999999864 68999999999 789999999999999999999753  7788876 45699


Q ss_pred             CHHHHHHHHhhCCcccCCCcceEecCcccccC
Q psy12508         81 SVPEMIQHFAENRLPILGAEHMCLLHPMIEQL  112 (113)
Q Consensus        81 sl~~lv~~y~~~~~~~~~~~~~~L~~pv~~~~  112 (113)
                      ||.+||+||+.+++.    ..+.|+.||+++.
T Consensus        87 sl~~LV~~y~~~~~~----~~~~L~~P~~~~~  114 (124)
T 2eob_A           87 SLVELVSYYEKHALY----RKMRLRYPVTPEL  114 (124)
T ss_dssp             SHHHHHHHHTTSCSS----SSCCSCEECCHHH
T ss_pred             CHHHHHHHHhhCCCC----CCcCCCCcCCcHH
Confidence            999999999999875    4578999998864

>2ekx_A Cytoplasmic tyrosine-protein kinase BMX; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction; NMR {Homo sapiens}

Probab=99.97  E-value=3.8e-31  Score=159.69  Aligned_cols=102  Identities=30%  Similarity=0.545  Sum_probs=88.2

Q ss_pred             CCCCCCCCCCCceeecCCHHHHHHHhcCC-CCceEEEEecCCCCCcEEEEEEe------CCeeEEEEEEecCCCCcEEEC
Q psy12508          1 MANPKPLDQRNWYHGSVTRHEAENILRNS-NEGSYLVRNSESNRPDYSLSLKS------ARGFMHMKIQRDPDTGKFILG   73 (113)
Q Consensus         1 ~~~~~~l~~~~w~~g~i~r~~ae~lL~~~-~~G~FLvR~s~~~~~~~~Lsv~~------~~~v~h~~I~~~~~~~~~~~~   73 (113)
                      ++..++++.++||||.|+|++||++|+.. ++|+||||.| +.++.|+|||+.      ++.++||+|...+ +|.|.+.
T Consensus         2 ~~~~~~l~~~~Wyhg~isR~~Ae~lL~~~~~~G~FLVR~S-~~~g~y~LSv~~~~~~~~~~~v~H~~I~~~~-~g~~~l~   79 (110)
T 2ekx_A            2 SSGSSGLDDYDWFAGNISRSQSEQLLRQKGKEGAFMVRNS-SQVGMYTVSLFSKAVNDKKGTVKHYHVHTNA-ENKLYLA   79 (110)
T ss_dssp             CCCSSCTTTSSSBCCSCCHHHHHHHHHHTCCTTEEEEEEC-SSTTCEEEEECCCCSSCSSCCCEEEECEECT-TCCEESS
T ss_pred             CCccCcccCCCeecCCCCHHHHHHHHhccCCCceEEEEec-CCCCCEEEEEEeccccCCCCcEEEEEEEECC-CCCEEEC
Confidence            35678999999999999999999999864 8999999999 568999999996      4689999999875 5788887


Q ss_pred             cCCCCCCCHHHHHHHHhhCCcccCCCcceEecCccc
Q psy12508         74 QFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMI  109 (113)
Q Consensus        74 ~~~~~F~sl~~lv~~y~~~~~~~~~~~~~~L~~pv~  109 (113)
                      + ...|+||.+||+||+.++..    ..+.|+.||+
T Consensus        80 ~-~~~F~sl~~LV~~y~~~~~~----l~~~L~~Pv~  110 (110)
T 2ekx_A           80 E-NYCFDSIPKLIHYHQHNSAG----MITRLRHPVS  110 (110)
T ss_dssp             T-TCCCSCHHHHHHHHHHSCCS----SSCCCCEECC
T ss_pred             C-CCccCCHHHHHHHHeeCCCC----CceecCccCC
Confidence            6 47999999999999999864    3567888875

>3pqz_A Growth factor receptor-bound protein 7; SH2, binds phosphotyrosine, tyrosine kinases, cytoplasmic, P binding; 2.41A {Homo sapiens} PDB: 1mw4_A* 2l4k_A* 2qms_A

Probab=99.97  E-value=4.1e-31  Score=161.11  Aligned_cols=106  Identities=23%  Similarity=0.389  Sum_probs=85.0

Q ss_pred             CCCCCCCCceeecCCHHHHHHHhcC--CCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCc--EEECcCCCCC
Q psy12508          4 PKPLDQRNWYHGSVTRHEAENILRN--SNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGK--FILGQFSAPF   79 (113)
Q Consensus         4 ~~~l~~~~w~~g~i~r~~ae~lL~~--~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~--~~~~~~~~~F   79 (113)
                      ...++.++||||.|+|++||++|++  .++|+||||.|.+.+|.|+||++.++.++||+|.+.+++|.  |.+.+....|
T Consensus         8 ~~~~~~~~Wyhg~isR~~Ae~lL~~~g~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~g~~~~~~~~~~~~F   87 (117)
T 3pqz_A            8 AAIHRTQLWFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLILPSEEEGRLYFSMDDGQTRF   87 (117)
T ss_dssp             -CGGGGCTTBCCSCCHHHHHHHHHHTTCCTTEEEEEECCC-CCCEEEEEEETTEEEEEEEEEECCTTCCEEESSTTSSCB
T ss_pred             hhhcccCccccCCCCHHHHHHHHhcCCCCCCEEEEEecCCCCCcEEEEEEeCCeeEEEEEEEecCCCCEEEEECCCCccc
Confidence            4567788999999999999999975  46999999999998899999999999999999998532454  3343334799


Q ss_pred             CCHHHHHHHHhhCCcccCCCcceEecCcccccCC
Q psy12508         80 DSVPEMIQHFAENRLPILGAEHMCLLHPMIEQLL  113 (113)
Q Consensus        80 ~sl~~lv~~y~~~~~~~~~~~~~~L~~pv~~~~~  113 (113)
                      +||.+||+||+.++..+    .+.|+.||++.+|
T Consensus        88 ~sl~~LV~~y~~~~~~l----~~~L~~P~~~~~~  117 (117)
T 3pqz_A           88 TDLLQLVEFHQLNRGIL----PCLLRHCCTRVAL  117 (117)
T ss_dssp             SSHHHHHHHHHHCCTTS----SSCCCEECC----
T ss_pred             CCHHHHHHHHhhCCCCC----cEECCCcCcccCC
Confidence            99999999999998754    4589999999775

>1nrv_A Growth factor receptor-bound protein 10; dimer, signaling protein; 1.65A {Homo sapiens} SCOP: d.93.1.1 PDB: 3m7f_A

Probab=99.97  E-value=6.2e-31  Score=157.59  Aligned_cols=100  Identities=24%  Similarity=0.462  Sum_probs=83.4

Q ss_pred             CCCCCceeecCCHHHHHHHhcC--CCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCC--cEEECcCCCCCCCH
Q psy12508          7 LDQRNWYHGSVTRHEAENILRN--SNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTG--KFILGQFSAPFDSV   82 (113)
Q Consensus         7 l~~~~w~~g~i~r~~ae~lL~~--~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~--~~~~~~~~~~F~sl   82 (113)
                      .+.++||||.|+|++||++|.+  .++|+||||.|++.+|.|+||++.++.++||+|...+++|  .|.+.+....|+||
T Consensus         2 h~~~~Wyhg~isR~~Ae~lL~~~g~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~~g~~~~~~~~~~~~F~sl   81 (105)
T 1nrv_A            2 HRTQHWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPCEDDGQTFFSLDDGNTKFSDL   81 (105)
T ss_dssp             CTTSTTBCTTCCHHHHHHHHHHTTCCTTEEEEEECSSCTTCEEEEEEETTEEEEEEEEEC-----CCEESSTTSSCBSSH
T ss_pred             CccCcccCCCCCHHHHHHHHHhcCCCCceEEEEeCCCCCCCEEEEEEeCCEEEEEEEEEEcCCCCEEEEEcCCCcccCCH
Confidence            4678999999999999999975  3799999999998889999999999999999999853234  36665434799999


Q ss_pred             HHHHHHHhhCCcccCCCcceEecCcccc
Q psy12508         83 PEMIQHFAENRLPILGAEHMCLLHPMIE  110 (113)
Q Consensus        83 ~~lv~~y~~~~~~~~~~~~~~L~~pv~~  110 (113)
                      .+||+||+.++..+    .+.|+.||+|
T Consensus        82 ~~LV~~y~~~~~~l----~~~L~~p~~r  105 (105)
T 1nrv_A           82 IQLVDFYQLNKGVL----PCKLKHHCIR  105 (105)
T ss_dssp             HHHHHHHTTCCTTS----SSCCCEECCC
T ss_pred             HHHHHHhhhCCCCC----cEeCCCcCCC
Confidence            99999999988754    4589999875

>3ov1_A Growth factor receptor-bound protein 2; GRB2 SH2 domain, phosphotyrosine binding, signaling protein, signaling protein-antagonist complex; HET: PTR; 1.60A {Homo sapiens} SCOP: d.93.1.1 PDB: 3imj_A* 3in7_A* 3imd_A* 3kfj_A* 3n8m_A* 3in8_A* 3s8l_A* 3s8n_A* 3s8o_A* 2huy_A* 2h5k_A* 2huw_A* 2h46_E* 3c7i_A* 3n84_A* 1fhs_A 1bm2_A* 1bmb_A* 3ove_A* 1fyr_A* ...

Probab=99.97  E-value=7e-31  Score=160.09  Aligned_cols=101  Identities=28%  Similarity=0.523  Sum_probs=88.3

Q ss_pred             CCCCCCceeecCCHHHHHHHhcCC-CCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCHHH
Q psy12508          6 PLDQRNWYHGSVTRHEAENILRNS-NEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSVPE   84 (113)
Q Consensus         6 ~l~~~~w~~g~i~r~~ae~lL~~~-~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl~~   84 (113)
                      +++.++||||.|+|++||++|+.. ++|+||||.|.+.+|.|+|||+.+++++||+|.+.. +|.|.+.+  ..|+||.+
T Consensus         2 ~L~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~-~g~~~l~~--~~F~sl~e   78 (117)
T 3ov1_A            2 EMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDG-AGKYFLWV--VKFNSLNE   78 (117)
T ss_dssp             -CCCCTTBCCSCCHHHHHHHHHTCCSTTBEEEEECSSSTTCEEEEEEETTEEEEEECEECT-TSCEESSS--CEESSHHH
T ss_pred             CcccCCcccCCCCHHHHHHHHhCCCCCCcEEEEeCCCCCCCEEEEEecCCceEEEEEEECC-CCeEEECC--CCcCCHHH
Confidence            578999999999999999999874 689999999998899999999999999999999865 68899986  79999999


Q ss_pred             HHHHHhhCCcccCCCcceEecCccccc
Q psy12508         85 MIQHFAENRLPILGAEHMCLLHPMIEQ  111 (113)
Q Consensus        85 lv~~y~~~~~~~~~~~~~~L~~pv~~~  111 (113)
                      ||+||+.+++..  ...+.|+.|++++
T Consensus        79 LV~~y~~~~l~~--~~~~~L~~~~~~P  103 (117)
T 3ov1_A           79 LVDYHRSTSVSR--NQQIFLRDIEQVP  103 (117)
T ss_dssp             HHHHTTTSCSCS--SSCCCCBCCCCCC
T ss_pred             HHHHHhhCCCCC--CCceEecCCCcCC
Confidence            999999998753  3456787777764

>2crh_A VAV proto-oncogene; oncoprotein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2ror_A* 2lct_A*

Probab=99.97  E-value=4.8e-31  Score=164.93  Aligned_cols=105  Identities=26%  Similarity=0.492  Sum_probs=91.7

Q ss_pred             CCCCCCCceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCHHH
Q psy12508          5 KPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSVPE   84 (113)
Q Consensus         5 ~~l~~~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl~~   84 (113)
                      .+++.++||||.|+|++||++|++.++|+||||.|.+.++.|+|||+.++.++||+|...  +|.|.+.+ ...|+||.+
T Consensus        21 ~~~~~~~WyhG~isR~eAe~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~--~g~~~l~~-~~~F~sl~e   97 (138)
T 2crh_A           21 QDLSVHLWYAGPMERAGAESILANRSDGTFLVRQRVKDAAEFAISIKYNVEVKHIKIMTA--EGLYRITE-KKAFRGLTE   97 (138)
T ss_dssp             SCGGGSSSBCCSCCHHHHHHHTTTSCTTEEEEECCSSTTCCCEEEEEETTEEEEEECEEE--TTEEESST-TCCBSSHHH
T ss_pred             CCCCcCCcccCCCCHHHHHHHhcCCCCCEEEEEECCCCCCCEEEEEEECCeEEEEEEEeC--CCEEEECC-CCccCCHHH
Confidence            346778999999999999999988889999999999888999999999999999999643  58899886 479999999


Q ss_pred             HHHHHhhCCcccC-CCcceEecCcccccC
Q psy12508         85 MIQHFAENRLPIL-GAEHMCLLHPMIEQL  112 (113)
Q Consensus        85 lv~~y~~~~~~~~-~~~~~~L~~pv~~~~  112 (113)
                      ||+||+.+++... ++..+.|+.||+++.
T Consensus        98 LV~~y~~~~l~~~~~~l~~~L~~Pv~~~~  126 (138)
T 2crh_A           98 LVEFYQQNSLKDCFKSLDTTLQFPFKEPE  126 (138)
T ss_dssp             HHHHHTTSCGGGTCTTCCCCCCEESSCCC
T ss_pred             HHHHHHhCccccccCCcCcccCCccCCCC
Confidence            9999999998754 234688999999853

>3s9k_A Tyrosine-protein kinase ITK/TSK; proline isomerization, CIS proline, domain swapped dimer, SH transferase; HET: CIT; 2.35A {Mus musculus} PDB: 2etz_A* 2eu0_A* 1lui_A 1luk_A 1lum_A 1lun_A 2k79_B 2k7a_B

Probab=99.97  E-value=5.9e-31  Score=160.55  Aligned_cols=103  Identities=27%  Similarity=0.476  Sum_probs=87.4

Q ss_pred             CCCCCCCCCceeecCCHHHHHHHhcC-CCCceEEEEecCCCCCcEEEEEEeC------CeeEEEEEE--ecCCCCcEEEC
Q psy12508          3 NPKPLDQRNWYHGSVTRHEAENILRN-SNEGSYLVRNSESNRPDYSLSLKSA------RGFMHMKIQ--RDPDTGKFILG   73 (113)
Q Consensus         3 ~~~~l~~~~w~~g~i~r~~ae~lL~~-~~~G~FLvR~s~~~~~~~~Lsv~~~------~~v~h~~I~--~~~~~~~~~~~   73 (113)
                      .+++++.++||||.|+|++||.+|++ +++|+||||.| +.++.|+|||+..      +.++||+|.  ... +|.|.+.
T Consensus         2 ~~~~l~~~~Wyhg~isR~~Ae~lL~~~~~~G~FLVR~S-~~~g~y~LSv~~~~~~~~~~~v~H~~I~~~~~~-~g~~~~~   79 (118)
T 3s9k_A            2 SPNNLETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDS-RTPGTYTVSVFTKAIISENPCIKHYHIKETNDS-PKRYYVA   79 (118)
T ss_dssp             ---CGGGSTTBCTTCCHHHHHHHHHHHCCTTCEEEEEC-SSTTCEEEEEEECCSCSSSCEEEEEEEEECSCS-SCCEEEE
T ss_pred             CccccccCceecCCCCHHHHHHHHHhcCCCCeEEEEee-CCCCCEEEEEEecccccCCCceEEEEEeEEECC-CCCEEEC
Confidence            35788999999999999999999976 57999999999 7789999999986      889999994  343 5778887


Q ss_pred             cCCCCCCCHHHHHHHHhhCCcccCCCcceEecCcccccC
Q psy12508         74 QFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQL  112 (113)
Q Consensus        74 ~~~~~F~sl~~lv~~y~~~~~~~~~~~~~~L~~pv~~~~  112 (113)
                      + ...|+||.+||+||+.++..    ..+.|+.||++++
T Consensus        80 ~-~~~F~sl~~LV~~y~~~~~~----l~~~L~~Pv~~~~  113 (118)
T 3s9k_A           80 E-KYVFDSIPLLIQYHQYNGGG----LVTRLRYPVCGSP  113 (118)
T ss_dssp             C-SCCCSCHHHHHHHHHHCCTT----SSSCCCCCCCCST
T ss_pred             C-CcccCCHHHHHHHheeCCCC----CccCCCCcCCCCC
Confidence            6 47999999999999999864    4568999999875

>1ka6_A SH2 domain protein 1A; SH2 domain, protein-peptide complex, immune system; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1ka7_A

Probab=99.97  E-value=6.2e-31  Score=162.60  Aligned_cols=101  Identities=24%  Similarity=0.365  Sum_probs=88.6

Q ss_pred             CCCCCceeecCCHHHHHHHhcC-CCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECc----CCCCCCC
Q psy12508          7 LDQRNWYHGSVTRHEAENILRN-SNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQ----FSAPFDS   81 (113)
Q Consensus         7 l~~~~w~~g~i~r~~ae~lL~~-~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~----~~~~F~s   81 (113)
                      ++.++||||.|+|++||++|++ +++|+||||.|++.+|.|+|||+.++.++||+|.+.. +|.|.+.+    ....|+|
T Consensus         1 l~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~-~g~~~l~~~~g~~~~~F~s   79 (128)
T 1ka6_A            1 MDAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTE-TGSWSAETAPGVHKRYFRK   79 (128)
T ss_dssp             CCCCSSBCCSCCHHHHHHHHHHHCCTTCEEEEECSSSTTCEEEEEESSSCEEEEEEEECT-TSCEEEECSTTSCCCEESS
T ss_pred             CCCCcccCCCCCHHHHHHHHhcCCCCCEEEEeecCCCCCCEEEEEEeCCEEEEEEEEECC-CCeEEEeecCCCCCCccCC
Confidence            5789999999999999999975 5899999999998889999999999999999999865 68898874    2478999


Q ss_pred             HHHHHHHHhhCCcccCCCcceEecCcccccC
Q psy12508         82 VPEMIQHFAENRLPILGAEHMCLLHPMIEQL  112 (113)
Q Consensus        82 l~~lv~~y~~~~~~~~~~~~~~L~~pv~~~~  112 (113)
                      |.+||+||+.++..    ..+.|+.||+++.
T Consensus        80 l~~LV~~y~~~~~g----l~~~L~~P~~~~~  106 (128)
T 1ka6_A           80 IKNLISAFQKPDQG----IVIPLQYPVEKKS  106 (128)
T ss_dssp             HHHHHHHTTSSCSS----SSSCCCSBCCSSC
T ss_pred             HHHHHHHHhhCCCC----CcEEcCCcCCCCC
Confidence            99999999998753    4568999998864

>2ge9_A Tyrosine-protein kinase BTK; SH2 domain, structure, transferase; NMR {Homo sapiens}

Probab=99.97  E-value=1.2e-30  Score=160.76  Aligned_cols=103  Identities=25%  Similarity=0.483  Sum_probs=89.5

Q ss_pred             CCCCCCCCCceeecCCHHHHHHHhcCC-CCceEEEEecCCCCCcEEEEEEe------CCeeEEEEEEecCCCCcEEECcC
Q psy12508          3 NPKPLDQRNWYHGSVTRHEAENILRNS-NEGSYLVRNSESNRPDYSLSLKS------ARGFMHMKIQRDPDTGKFILGQF   75 (113)
Q Consensus         3 ~~~~l~~~~w~~g~i~r~~ae~lL~~~-~~G~FLvR~s~~~~~~~~Lsv~~------~~~v~h~~I~~~~~~~~~~~~~~   75 (113)
                      ++++++.++||||.|+|++||++|+.. ++|+||||.| +.+|.|+|||+.      ++.++||+|...+ +|.|.+.+ 
T Consensus         4 ~~~~l~~~~WyhG~isR~eAe~lL~~~g~~G~FLVR~S-s~~g~y~LSv~~~~~~~~~~~v~H~~I~~~~-~g~~~l~~-   80 (125)
T 2ge9_A            4 AEDSIEMYEWYSKHMTRSQAEQLLKQEGKEGGFIVRDS-SKAGKYTVSVFAKSTGDPQGVIRHYVVCSTP-QSQYYLAE-   80 (125)
T ss_dssp             CCCSSCCSSSEETTCCHHHHHHHHHHHTCTTEEEEEEC-SSSCCEEEEEEESSSSSTTCEEEEEECEEET-TTEEESST-
T ss_pred             cccccccCCccccCCCHHHHHHHHhhcCCCceEEEEec-CCCCCEEEEEEeccccCCCCeEEEEEEEEcC-CCCEEECC-
Confidence            457899999999999999999999864 8999999999 568999999997      4689999999876 58888876 


Q ss_pred             CCCCCCHHHHHHHHhhCCcccCCCcceEecCcccccC
Q psy12508         76 SAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQL  112 (113)
Q Consensus        76 ~~~F~sl~~lv~~y~~~~~~~~~~~~~~L~~pv~~~~  112 (113)
                      ...|+||.+||+||+.++..+    .+.|+.||+++.
T Consensus        81 ~~~F~sl~eLV~~y~~~~~~l----~~~L~~P~~~~~  113 (125)
T 2ge9_A           81 KHLFSTIPELINYHQHNSAGL----ISRLKYPVSQQN  113 (125)
T ss_dssp             TSCBSSHHHHHHHHHCCCTTC----SCCSSEECCSSC
T ss_pred             CCcCCCHHHHHHHhhhCCCCC----ceeCCCccCCCC
Confidence            479999999999999998643    568999998864

>1jyr_A Growth factor receptor-bound protein 2; receptor binding, regulatory, inhibitor, signaling protein-I complex; HET: PTR; 1.55A {Homo sapiens} SCOP: d.93.1.1 PDB: 1jyq_A* 1jyu_A 1qg1_E* 1x0n_A* 2aob_A* 2aoa_A* 3n7y_A* 1tze_E* 1zfp_E* 3mxc_A* 3mxy_A* 1cj1_A*

Probab=99.97  E-value=1.5e-30  Score=153.62  Aligned_cols=94  Identities=30%  Similarity=0.570  Sum_probs=82.5

Q ss_pred             CCCceeecCCHHHHHHHhcCCC-CceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCHHHHHH
Q psy12508          9 QRNWYHGSVTRHEAENILRNSN-EGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSVPEMIQ   87 (113)
Q Consensus         9 ~~~w~~g~i~r~~ae~lL~~~~-~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl~~lv~   87 (113)
                      .++||||.|+|++||++|++.+ +|+||||.|++.+|.|+||++.++.++||+|...+ +|.|.+.+  ..|+||.+||+
T Consensus         2 ~~~Wyhg~isR~~Ae~lL~~~~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~-~g~~~l~~--~~F~sl~~LV~   78 (96)
T 1jyr_A            2 SMAWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDG-AGKYFLWV--VKFNSLNELVD   78 (96)
T ss_dssp             CCTTBCCSCCHHHHHHHHHTCCSTTBEEEEECSSSTTCEEEEEEETTEEEEEECEECT-TSCEESSS--CEESSHHHHHH
T ss_pred             CcceeccCCCHHHHHHHHhcCCCCcEEEEEecCCCCCCEEEEEEeCCeEEEEEEEEcC-CCCEEECC--cccCCHHHHHH
Confidence            5799999999999999998754 99999999998899999999999999999999865 58899886  79999999999


Q ss_pred             HHhhCCcccCCCcceEecCc
Q psy12508         88 HFAENRLPILGAEHMCLLHP  107 (113)
Q Consensus        88 ~y~~~~~~~~~~~~~~L~~p  107 (113)
                      ||+.+++.  ....+.|+.|
T Consensus        79 ~y~~~~l~--~~~~~~L~~~   96 (96)
T 1jyr_A           79 YHRSTSVS--RNQQIFLRDI   96 (96)
T ss_dssp             HTTSSCSC--SSSCCCCBCC
T ss_pred             HHhhCCCC--CCCceEecCC
Confidence            99999875  3345666654

>1r1p_A GRB2-related adaptor protein 2; SH2, GADS, phosphopeptide, peptide binding protein; HET: PTR; 1.80A {Mus musculus} SCOP: d.93.1.1 PDB: 1r1q_A* 1r1s_A*

Probab=99.97  E-value=1.5e-30  Score=154.73  Aligned_cols=92  Identities=25%  Similarity=0.549  Sum_probs=81.5

Q ss_pred             CCCCCCCCCceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCH
Q psy12508          3 NPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSV   82 (113)
Q Consensus         3 ~~~~l~~~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl   82 (113)
                      +..+++.++||||.|+|++||++|+..++|+||||.|++.+|.|+||++.++.++||+|.+.+ +|.|.+.+  ..|+||
T Consensus         2 nyi~l~~~~Wyhg~isR~~Ae~lL~~~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~-~g~~~l~~--~~F~sl   78 (100)
T 1r1p_A            2 SFIDIEFPEWFHEGLSRHQAENLLMGKDIGFFIIRASQSSPGDFSISVRHEDDVQHFKVMRDT-KGNYFLWT--EKFPSL   78 (100)
T ss_dssp             ----CTTTTTSCTTCCHHHHHHHHHTSCTTBEEEEECSSSTTCEEEEEECSSSEEEEECEECT-TCCEESSS--CEESSH
T ss_pred             CccEeccCCccccCCCHHHHHHHhcCCCCCEEEEEecCCCCCCEEEEEEECCEEEEEEEEEcC-CCCEEEeC--CEeCCH
Confidence            445789999999999999999999887899999999999899999999999999999999875 58899876  799999


Q ss_pred             HHHHHHHhhCCcccC
Q psy12508         83 PEMIQHFAENRLPIL   97 (113)
Q Consensus        83 ~~lv~~y~~~~~~~~   97 (113)
                      .+||+||+.++++..
T Consensus        79 ~~LV~~y~~~~l~~~   93 (100)
T 1r1p_A           79 NKLVDYYRTTSISKQ   93 (100)
T ss_dssp             HHHHHHHTTSCSSSS
T ss_pred             HHHHHHHHhCCCCCC
Confidence            999999999988644

>2aug_A Growth factor receptor-bound protein 14; phosphorylation, SH2 domain, signaling protein; 2.30A {Homo sapiens}

Probab=99.97  E-value=1.8e-30  Score=160.02  Aligned_cols=103  Identities=21%  Similarity=0.388  Sum_probs=86.4

Q ss_pred             CCCCCCCCceeecCCHHHHHHHhcC--CCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEE--CcCCCCC
Q psy12508          4 PKPLDQRNWYHGSVTRHEAENILRN--SNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFIL--GQFSAPF   79 (113)
Q Consensus         4 ~~~l~~~~w~~g~i~r~~ae~lL~~--~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~--~~~~~~F   79 (113)
                      ...++.++||||.|+|++||++|++  .++|+||||.|++.++.|+||++.++.++||+|...+++|.|++  .+....|
T Consensus        20 ~~~l~~~~WyhG~isR~eAe~lL~~~g~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~G~~~~~l~~~~~~F   99 (126)
T 2aug_A           20 HMIHRSQPWFHHKISRDEAQRLIIQQGLVDGVFLVRDSQSNPKTFVLSMSHGQKIKHFQIIPVEDDGEMFHTLDDGHTRF   99 (126)
T ss_dssp             --CGGGSTTEETTCCHHHHHHHHHTTTCCTTEEEEEECSSSSCCEEEEEEETTEEEEEEEEEEEETTEEEEESSTTSSCB
T ss_pred             ccccccCCcccCCCCHHHHHHHHhccCCCCCEEEEeecCCCCCCEEEEEEcCCeEEEEEEEEECCCCeEEEEeCCCCCcc
Confidence            4678889999999999999999986  37999999999988899999999999999999997522476654  4324799


Q ss_pred             CCHHHHHHHHhhCCcccCCCcceEecCcccc
Q psy12508         80 DSVPEMIQHFAENRLPILGAEHMCLLHPMIE  110 (113)
Q Consensus        80 ~sl~~lv~~y~~~~~~~~~~~~~~L~~pv~~  110 (113)
                      +||.+||+||+.++..+    .+.|+.||+|
T Consensus       100 ~SL~eLV~~y~~~~~~l----~~~L~~P~~r  126 (126)
T 2aug_A          100 TDLIQLVEFYQLNKGVL----PCKLKHYCAR  126 (126)
T ss_dssp             SSHHHHHHHHTTCCTTS----SSCCCEECCC
T ss_pred             CCHHHHHHHHhhCCCCC----ceecCCCcCC
Confidence            99999999999998764    4589999875

>2eo6_A B-cell linker protein; SH2, cytoplasmic adapter protein, B-cell adapter containing SH2 domain protein; NMR {Mus musculus}

Probab=99.97  E-value=2.1e-30  Score=162.53  Aligned_cols=106  Identities=24%  Similarity=0.408  Sum_probs=90.5

Q ss_pred             CCCCCCCceeecCCHHHHHHHhcC-CCCceEEEEecCC--CCCcEEEEEEeCCeeEEEEEEecCCCCc-EEECc---CCC
Q psy12508          5 KPLDQRNWYHGSVTRHEAENILRN-SNEGSYLVRNSES--NRPDYSLSLKSARGFMHMKIQRDPDTGK-FILGQ---FSA   77 (113)
Q Consensus         5 ~~l~~~~w~~g~i~r~~ae~lL~~-~~~G~FLvR~s~~--~~~~~~Lsv~~~~~v~h~~I~~~~~~~~-~~~~~---~~~   77 (113)
                      ..++.++||||.|+|++||++|.+ +++|+||||+|.+  .++.|+|||+.++.++||+|.+.. +|. |.+..   ...
T Consensus        18 ~~l~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S~~~~~~g~y~LSv~~~~~v~H~~I~~~~-~g~~~~l~~~~~~~~   96 (141)
T 2eo6_A           18 AELLGKPWYAGACDRKSAEEALHRSNKDGSFLIRKSSGHDSKQPYTLVAFFNKRVYNIPVRFIE-ATKQYALGKKKNGEE   96 (141)
T ss_dssp             HTTTTCSSEEESCCHHHHHHHHHHHCCTTCBCEEECSTTCSSCSEEEEEEETTEEEEEEECEET-TTTEECSSSCCTTCC
T ss_pred             cccCCCCeEecCCCHHHHHHHhhccCCCceEEEEECCCCCCCCCEEEEEEECCEEEEEEEEEeC-CCCEEEEccccCCCC
Confidence            468899999999999999999964 6899999999996  689999999999999999998754 465 66663   247


Q ss_pred             CCCCHHHHHHHHhhCCcccCCC-----cceEecCccccc
Q psy12508         78 PFDSVPEMIQHFAENRLPILGA-----EHMCLLHPMIEQ  111 (113)
Q Consensus        78 ~F~sl~~lv~~y~~~~~~~~~~-----~~~~L~~pv~~~  111 (113)
                      .|+||.+||+||+.+++.+.+.     ..+.|++||.+.
T Consensus        97 ~F~sl~eLV~~y~~~~~~l~~~~~~~~~~~~L~~Pv~~~  135 (141)
T 2eo6_A           97 YFGSVVEIVNSHQHNPLVLIDSQNNTKDSTRLKYAVKVS  135 (141)
T ss_dssp             CBSSHHHHHHHHHHSCCCCCCSSSCCCCCCCCCCBCCCC
T ss_pred             ccCCHHHHHHHHhhCCccceecccCCCCceEeCcCcccC
Confidence            8999999999999999988432     257899999875

>2dx0_A Phospholipase C, gamma 2; phosphoric diester hydrolase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.50A {Mus musculus}

Probab=99.97  E-value=2.1e-30  Score=162.08  Aligned_cols=106  Identities=29%  Similarity=0.524  Sum_probs=89.7

Q ss_pred             CCCCCCCceeecC-CHHHHHHHhcC------CCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCC--cEEECcC
Q psy12508          5 KPLDQRNWYHGSV-TRHEAENILRN------SNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTG--KFILGQF   75 (113)
Q Consensus         5 ~~l~~~~w~~g~i-~r~~ae~lL~~------~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~--~~~~~~~   75 (113)
                      +.+..++||||.| +|++||++|++      .++|+||||.|.+.++.|+|||+.++.++||+|....++|  .|++.+ 
T Consensus        17 ~~~~~~~WyhG~i~sR~eAe~lL~~~c~~~g~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~gg~~~~~l~~-   95 (138)
T 2dx0_A           17 ELHFGEKWFHKKVESRTSAEKLLQEYCAETGAKDGTFLVRESETFPNDYTLSFWRSGRVQHCRIRSTMENGVMKYYLTD-   95 (138)
T ss_dssp             GTTSCCTTBCTTCCCHHHHHHHHHHHHTTTTCCTTCEEEEECSSSTTCEEEEEEETTEEEEEEEEEEEETTEEEEESST-
T ss_pred             ccccCCCcccCCCCCHHHHHHHHHhhccccCCCCCEEEEEeCCCCCCCeEEEEEECCeEEEEEEEEecCCCceEEEeCC-
Confidence            5678899999999 89999999984      5899999999998889999999999999999999874234  688876 


Q ss_pred             CCCCCCHHHHHHHHhhCCcccCCCcceEecCcccccC
Q psy12508         76 SAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQL  112 (113)
Q Consensus        76 ~~~F~sl~~lv~~y~~~~~~~~~~~~~~L~~pv~~~~  112 (113)
                      ...|+||.+||+||+.+++.. .+..+.|+.||+++.
T Consensus        96 ~~~F~sl~eLI~~y~~~~l~~-~gl~~~L~~Pv~~~~  131 (138)
T 2dx0_A           96 NLTFNSIYALIQHYREAHLRC-AEFELRLTDPVPNPN  131 (138)
T ss_dssp             TSCBSSHHHHHHHTTTSCCCC-GGGSSCCCCBCC---
T ss_pred             CCcCCCHHHHHHHHhhCCCCC-CCcccccCccCCCCC
Confidence            589999999999999998853 235689999998863

>1ju5_A CRK; CRK, SH2, SH3, adaptor protein, phosphopeptide, protein binding/transferase complex; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1

Probab=99.97  E-value=2.3e-30  Score=156.06  Aligned_cols=93  Identities=28%  Similarity=0.583  Sum_probs=82.6

Q ss_pred             CceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCC----------------CcEEECc
Q psy12508         11 NWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDT----------------GKFILGQ   74 (113)
Q Consensus        11 ~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~----------------~~~~~~~   74 (113)
                      +||||.|+|++||++|+..++|+||||.|++.+|.|+||++.++.++||+|...++.                +.|.+++
T Consensus         1 ~Wyhg~isr~~Ae~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~g~~~~~~~~~~~g~~~~~~~l~~   80 (109)
T 1ju5_A            1 SWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVPPSPAQPPPGVSPSRLRIGD   80 (109)
T ss_dssp             CCEETTCCHHHHHHHHTTCCTTEEEEEECSSSTTEEEEEEECSSCEEEEEEECCSSSSCCCCCCSSCCTTCCCCCEEETT
T ss_pred             CccccCCCHHHHHHHhcCCCCCEEEEEecCCCCCCEEEEEEECCeEEEEEEEECCCCcccccccccccccccccEEEeCC
Confidence            699999999999999987889999999999989999999999999999999876521                4688864


Q ss_pred             CCCCCCCHHHHHHHHhhCCcccCCCcceEecCcccc
Q psy12508         75 FSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIE  110 (113)
Q Consensus        75 ~~~~F~sl~~lv~~y~~~~~~~~~~~~~~L~~pv~~  110 (113)
                        ..|+||.+||+||+.+++..     +.|+.||+|
T Consensus        81 --~~F~sl~~LV~~y~~~~l~~-----~~L~~Pv~r  109 (109)
T 1ju5_A           81 --QEFDSLPALLEFYKIHYLDT-----TTLIEPVSR  109 (109)
T ss_dssp             --EEESSHHHHHHHHHHSCSSS-----SCCCEESCC
T ss_pred             --cccCCHHHHHHHHhhCCCCC-----eecCccCCC
Confidence              79999999999999998752     479999986

>1aot_F FYN protein-tyrosine kinase; SH2 domain, signal transduction, peptide complex, complex (proto-oncogene/early protein); HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1aou_F*

Probab=99.97  E-value=3.8e-31  Score=158.72  Aligned_cols=99  Identities=27%  Similarity=0.588  Sum_probs=86.5

Q ss_pred             CCCCCCceeecCCHHHHHHHhcC--CCCceEEEEecCCCCCcEEEEEEe-----CCeeEEEEEEecCCCCcEEECcCCCC
Q psy12508          6 PLDQRNWYHGSVTRHEAENILRN--SNEGSYLVRNSESNRPDYSLSLKS-----ARGFMHMKIQRDPDTGKFILGQFSAP   78 (113)
Q Consensus         6 ~l~~~~w~~g~i~r~~ae~lL~~--~~~G~FLvR~s~~~~~~~~Lsv~~-----~~~v~h~~I~~~~~~~~~~~~~~~~~   78 (113)
                      +++.++||||.|+|++||++|..  .++|+||||.|++.+|.|+|||+.     ++.++||+|...+ +|.|++.+ ...
T Consensus         1 sl~~~~Wyhg~isR~~Ae~lL~~~g~~~G~FLVR~S~~~~g~~~LSv~~~~~~~~~~v~H~~I~~~~-~g~~~l~~-~~~   78 (106)
T 1aot_F            1 SIQAEEWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIRKLD-NGGYYITT-RAQ   78 (106)
T ss_dssp             CCCSSSSCCBSCCHHHHHHHHHTTTCCTTEECCBCBSSSSSBBCCEEECCBTTTBCCEEECCBEEET-TTEEEEET-TEE
T ss_pred             CCccCccCCCCCCHHHHHHHHhhCCCCCcEEEEEeCCCCCCCEEEEEEecccCCCCcEEEEEEEEeC-CCCEEECC-CCc
Confidence            47889999999999999999975  479999999999888999999996     6789999999875 57888876 579


Q ss_pred             CCCHHHHHHHHhhCCcccCCCcceEecCcccc
Q psy12508         79 FDSVPEMIQHFAENRLPILGAEHMCLLHPMIE  110 (113)
Q Consensus        79 F~sl~~lv~~y~~~~~~~~~~~~~~L~~pv~~  110 (113)
                      |+||.+||+||+.++..+    .+.|+.||++
T Consensus        79 F~sl~~LV~~y~~~~~~l----~~~L~~p~~~  106 (106)
T 1aot_F           79 FETLQQLVQHYSERAAGL----SSRLVVPSHK  106 (106)
T ss_dssp             ESSHHHHHHHHTTCCTTS----SSCSCSSCCC
T ss_pred             cCCHHHHHHHhccCCCCC----cEeecccCCC
Confidence            999999999999997654    4589999875

>2vif_A Suppressor of cytokine signalling 6; growth regulation, signal transduction inhibitor, KIT regula phosphotyrosine, signaling protein; HET: PTR; 1.45A {Homo sapiens}

Probab=99.97  E-value=1.3e-30  Score=163.51  Aligned_cols=104  Identities=30%  Similarity=0.455  Sum_probs=89.9

Q ss_pred             CCCCCCceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECc--CCCCCCCHH
Q psy12508          6 PLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQ--FSAPFDSVP   83 (113)
Q Consensus         6 ~l~~~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~--~~~~F~sl~   83 (113)
                      .++.++||||.|+|++||++|++.++|+||||.|.+.++.|+||++.++.++||+|...+  |.|.+.+  ....|+||.
T Consensus        20 ~l~~~~WyhG~isR~eAe~lL~~~~~G~FLVR~S~~~~~~~~LSv~~~~~v~H~~I~~~~--g~~~l~~~~~~~~F~sl~   97 (141)
T 2vif_A           20 KLAKQGWYWGPITRWEAEGKLANVPDGSFLVRDSSDDRYLLSLSFRSHGKTLHTRIEHSN--GRFSFYEQPDVEGHTSIV   97 (141)
T ss_dssp             HHHHHTCBCCSCCHHHHHHHTTTSCTTCEEEEECSSTTCSEEEEEEETTEEEEEEEEEET--TEEEETTCCSCCCBSSHH
T ss_pred             hhccCCCcccCCCHHHHHHHhcCCCCceEEEEecCCCCCCEEEEEEECCEEEEEEEEEEC--CEEEEeecCCCCccCCHH
Confidence            345679999999999999999878899999999999889999999999999999999874  8899983  358999999


Q ss_pred             HHHHHHhhCCc-cc----------CCCcceEecCccccc
Q psy12508         84 EMIQHFAENRL-PI----------LGAEHMCLLHPMIEQ  111 (113)
Q Consensus        84 ~lv~~y~~~~~-~~----------~~~~~~~L~~pv~~~  111 (113)
                      +||+||+.+++ .+          .....+.|++||.|.
T Consensus        98 eLI~~y~~~~~~gl~c~l~~~~~~~~~~~v~L~~Pv~R~  136 (141)
T 2vif_A           98 DLIEHSIGDSENGAFCYSRSRLPGSATYPVRLTNPVSRF  136 (141)
T ss_dssp             HHHHHHHHHHHHTCCEEESCCSTTCCCEECCCCCBCCSS
T ss_pred             HHHHHHhhCCCCCcceeccccCCCCCccceEeCCCCccc
Confidence            99999998774 33          223468999999975

>2dm0_A Tyrosine-protein kinase TXK; TEC family kinase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.97  E-value=2.6e-30  Score=159.22  Aligned_cols=101  Identities=29%  Similarity=0.541  Sum_probs=87.8

Q ss_pred             CCCCCCCCceeecCCHHHHHHHhcC-CCCceEEEEecCCCCCcEEEEEEeC------CeeEEEEEEecCCCCcEEECcCC
Q psy12508          4 PKPLDQRNWYHGSVTRHEAENILRN-SNEGSYLVRNSESNRPDYSLSLKSA------RGFMHMKIQRDPDTGKFILGQFS   76 (113)
Q Consensus         4 ~~~l~~~~w~~g~i~r~~ae~lL~~-~~~G~FLvR~s~~~~~~~~Lsv~~~------~~v~h~~I~~~~~~~~~~~~~~~   76 (113)
                      ..+++.++||||.|+|++||++|++ +++|+||||.| +.++.|+|||+..      +.++||+|...+ +|.|++.+ .
T Consensus        10 ~~~l~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S-~~~g~y~LSv~~~~~~~~~~~v~H~~I~~~~-~g~~~l~~-~   86 (125)
T 2dm0_A           10 ITNLEIYEWYHRNITRNQAEHLLRQESKEGAFIVRDS-RHLGSYTISVFMGARRSTEAAIKHYQIKKND-SGQWYVAE-R   86 (125)
T ss_dssp             SCCCTTSSSBCCSCCHHHHHHHHHHHCSTTCBCEEEE-TTEEEEEEEEECCCSSSSSCCEEEEEEEECT-TCCEESSS-S
T ss_pred             ccccccCCcccCCCCHHHHHHHHhhcCCCCEEEEEec-CCCCCEEEEEEeccccCCCCcEEEEEEEEcC-CCCEEECC-C
Confidence            3578899999999999999999976 48999999999 5689999999984      589999999875 57888876 4


Q ss_pred             CCCCCHHHHHHHHhhCCcccCCCcceEecCccccc
Q psy12508         77 APFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQ  111 (113)
Q Consensus        77 ~~F~sl~~lv~~y~~~~~~~~~~~~~~L~~pv~~~  111 (113)
                      ..|+||.+||+||+.++..+    .+.|+.||+++
T Consensus        87 ~~F~sl~eLV~~y~~~~~~l----~~~L~~P~~~~  117 (125)
T 2dm0_A           87 HAFQSIPELIWYHQHNAAGL----MTRLRYPVGLM  117 (125)
T ss_dssp             CCCSSHHHHHHHHTTCCCSS----SCCCCSBCCSS
T ss_pred             CccCCHHHHHHHhhhCCCCC----ccCCCCccCCC
Confidence            79999999999999998654    56899999885

>2c9w_A Suppressor of cytokine signaling 2; growth regulation, SH2 domain, signal transduction inhibitor nuclear protein; 1.9A {Homo sapiens} SCOP: a.271.1.1 d.93.1.1

Probab=99.96  E-value=9.1e-30  Score=163.94  Aligned_cols=105  Identities=30%  Similarity=0.526  Sum_probs=89.4

Q ss_pred             CCCCCCceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCC------CCC
Q psy12508          6 PLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFS------APF   79 (113)
Q Consensus         6 ~l~~~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~------~~F   79 (113)
                      .++.++||||.|+|++||++|+..++|+||||+|++.++.|+||++.+++++||+|...+  |.|.+.+..      ..|
T Consensus        13 ~l~~~~WyhG~isR~eAe~lL~~~~~G~FLVR~S~~~~~~~~LSv~~~~~v~H~rI~~~~--g~~~l~~~~~~~~~~~~F   90 (169)
T 2c9w_A           13 ELGQTGWYWGSMTVNEAKEKLKEAPEGTFLIRDSSHSDYLLTISVKTSAGPTNLRIEYQD--GKFRLDSIICVKSKLKQF   90 (169)
T ss_dssp             HHHHTSCBCTTCCHHHHHHHHTTSCTTCEEEEECCSTTCSEEEEEEETTEEEEEEEEEET--TEEEECTTTTTGGGCCCB
T ss_pred             hcccCCccccCCCHHHHHHHcCCCCCcEEEEecCCCCCCeEEEEEEECCeeEEEEEEEeC--CEEEEccccCccccCCCC
Confidence            456789999999999999999878899999999998889999999999999999999864  889998742      789


Q ss_pred             CCHHHHHHHHhhCCccc--------CCCcceEecCcccccC
Q psy12508         80 DSVPEMIQHFAENRLPI--------LGAEHMCLLHPMIEQL  112 (113)
Q Consensus        80 ~sl~~lv~~y~~~~~~~--------~~~~~~~L~~pv~~~~  112 (113)
                      +||.+||+||+.+++..        ..+..+.|++|+.+++
T Consensus        91 ~sl~eLI~~y~~~~~~~~~~~~~~~~~~~~~~L~~P~~~~~  131 (169)
T 2c9w_A           91 DSVVHLIDYYVQMCKDKRTGPEAPRNGTVHLYLTKPLYTSA  131 (169)
T ss_dssp             SCHHHHHHHHHHHTC--------------CCCCCCBCCSSC
T ss_pred             CCHHHHHHHHHhCcCCCcccccCCCCcCccceecCcccccc
Confidence            99999999999988752        1234689999998854

>2hmh_A Suppressor of cytokine signaling 3; SOCS3, GP130, PTyr, peptide complex, cytokine regulator; HET: PTR; 2.00A {Mus musculus}

Probab=99.96  E-value=2.3e-29  Score=159.53  Aligned_cols=103  Identities=27%  Similarity=0.486  Sum_probs=86.7

Q ss_pred             CCCCCCceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCC------CCC
Q psy12508          6 PLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFS------APF   79 (113)
Q Consensus         6 ~l~~~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~------~~F   79 (113)
                      .++.++||||.|+|++||++|++.++|+||||+|++.++.|+|||+.++.++||+|...  +|.|.+.+..      ..|
T Consensus        30 ~l~~~~WyhG~isR~eAe~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~rI~~~--~g~f~l~~~~~~~~~~~~F  107 (152)
T 2hmh_A           30 KLQESGFYWSAVTGGEANLLLSAEPAGTFLIRDSSDQRHFFTLSVKTQSGTKNLRIQXE--GGSFSLQSDPRSTQPVPRF  107 (152)
T ss_dssp             HHHHTSSEETTCCHHHHHHHHHTSCTTEEEEEECCSTTCSEEEEEEETTEEEEEEEECG--GGCBEECBCTTCSSCCCCB
T ss_pred             hhccCCCcCCCCCHHHHHHHhcCCCCCcEEEEeCCCCCCcEEEEEEcCCceEEEEEEec--CCEEEEecccccccccCcc
Confidence            45678999999999999999988899999999999888999999999999999999984  4788888732      789


Q ss_pred             CCHHHHHHHHhhCCcc----------cC---CCcceEecCcccc
Q psy12508         80 DSVPEMIQHFAENRLP----------IL---GAEHMCLLHPMIE  110 (113)
Q Consensus        80 ~sl~~lv~~y~~~~~~----------~~---~~~~~~L~~pv~~  110 (113)
                      +||.+||+||+.++..          +.   ....+.|++|+.+
T Consensus       108 ~SL~eLV~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Pl~~  151 (152)
T 2hmh_A          108 DXVLKLVHHYMPPQALPGSTPKRAYYIYSGGEKIPLVLSRPLSS  151 (152)
T ss_dssp             SSHHHHHHHTCCCCC---------EEEC----CEEECCCEECCC
T ss_pred             CCHHHHHHHHhhCcccccccccccceecCCCcceeEEEcccCcC
Confidence            9999999999998731          11   1134788888865

>2kno_A Tensin-like C1 domain-containing phosphatase; SH2 domain, TENC1, solution structure, cell junctio membrane, hydrolase, membrane, metal-binding; NMR {Homo sapiens} PDB: 2l6k_A

Probab=99.96  E-value=5.5e-29  Score=154.37  Aligned_cols=99  Identities=24%  Similarity=0.470  Sum_probs=84.4

Q ss_pred             CCCCCCCCceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEeC---------------CeeEEEEEEecCCCC
Q psy12508          4 PKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSA---------------RGFMHMKIQRDPDTG   68 (113)
Q Consensus         4 ~~~l~~~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~---------------~~v~h~~I~~~~~~~   68 (113)
                      ...++.++||||.|+|++||++|++.++|+||||.|++.+|.|+|||+..               +.|+||+|...+ +|
T Consensus        14 ~~~~~~~~Wyhg~isR~eAe~lL~~~~~G~FLVR~S~s~~g~y~LSv~~~~~~~~~~~~~g~~~~~~v~H~~I~~~~-~g   92 (131)
T 2kno_A           14 RGSDTSKFWYKPHLSRDQAIALLKDKDPGAFLIRDSHSFQGAYGLALKVATPPPSAQPWKGDPVEQLVRHFLIETGP-KG   92 (131)
T ss_dssp             CCCCCHHHHBCTTCCHHHHHHHHTTSCTTBEEEEECSSSTTEEEEEEECSCCSSSSSSCCSCHHHHHEEEEEEECCS-SC
T ss_pred             ccccccCCceecCCCHHHHHHHhcCCCCCeEEEecCCCCCCCEEEEEEeCCCCcccccccccccCCceEEEEEEECC-CC
Confidence            45677889999999999999999878999999999999899999999986               379999999876 45


Q ss_pred             cEEECc--CCCCCCCHHHHHHHHhhCCcccCCCcceEecCcc
Q psy12508         69 KFILGQ--FSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPM  108 (113)
Q Consensus        69 ~~~~~~--~~~~F~sl~~lv~~y~~~~~~~~~~~~~~L~~pv  108 (113)
                       |.+.+  ....|+||.+||+||+.+++.+.    +.|+.|+
T Consensus        93 -~~l~g~~~~~~F~SL~eLV~~y~~~~~~L~----~~L~~P~  129 (131)
T 2kno_A           93 -VKIKGCPSEPYFGSLSALVSQHSISPISLP----CCLRIPS  129 (131)
T ss_dssp             -CCEETCSSCCCCCSHHHHHHTTTTCCSSCS----SCCBCSS
T ss_pred             -CEEecCCCCCccCCHHHHHHHHhhCCCCCC----eECCCcC
Confidence             66621  24789999999999999998654    4788886

>2izv_A Suppressor of cytokine signaling 4; signal transduction inhibitor, growth regulation, signal transduction, SH2 domain, nuclear protein; 2.55A {Homo sapiens} SCOP: a.271.1.1 d.93.1.1

Probab=99.95  E-value=7.2e-29  Score=161.62  Aligned_cols=103  Identities=18%  Similarity=0.349  Sum_probs=88.8

Q ss_pred             CCCCCCCceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCC---CCCCC
Q psy12508          5 KPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFS---APFDS   81 (113)
Q Consensus         5 ~~l~~~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~---~~F~s   81 (113)
                      ..++.++||||.|+|.+||++|...++|+||||+|+...+.|+||++.+++++||+|...+  |.|.+.+..   ..|+|
T Consensus        29 ~~l~~~~WYhG~isR~eAE~lL~~~~dGtFLVR~S~~~~~~lsLSvr~~~~v~H~rI~~~~--g~f~l~~~~~~~~~F~S  106 (187)
T 2izv_A           29 LQINNNPCYWGVMDKYAAEALLEGKPEGTFLLRDSAQEDYLFSVSFRRYSRSLHARIEQWN--HNFSFDAHDPCVFHSPD  106 (187)
T ss_dssp             HHHHHCTTEEEECCHHHHHHHHTTCCTTEEEEEECSSTTCSEEEEEEETTEEEEEECEEET--TEEESCTTCTTSCCBSS
T ss_pred             hhcccCCccccCCCHHHHHHHhcCCCCCcEEEEECCCCCceEEEEEeeCCeEEEEEEEECC--CEEEEeccCCCccccCC
Confidence            3566789999999999999999878899999999998777899999999999999999875  788887632   37999


Q ss_pred             HHHHHHHHhhCCcccCCCcceEecCccccc
Q psy12508         82 VPEMIQHFAENRLPILGAEHMCLLHPMIEQ  111 (113)
Q Consensus        82 l~~lv~~y~~~~~~~~~~~~~~L~~pv~~~  111 (113)
                      |.+||+||+.++..+.  ..+.|+.||.+.
T Consensus       107 L~eLV~hY~~~~~~~~--~~~~L~~Pv~r~  134 (187)
T 2izv_A          107 ITGLLEHYKDPSACMF--FEPLLSTPLIRT  134 (187)
T ss_dssp             HHHHHHHTCCGGGCCT--TSCCCCEECCCC
T ss_pred             HHHHHHHHHhcccccc--cccccccccccc
Confidence            9999999999887643  246899999875

>2oq1_A Tyrosine-protein kinase ZAP-70; tandem SH2 domains, ZAP-70, tyrosine kinase, transferase; HET: PTR; 1.90A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1m61_A

Probab=99.95  E-value=1.4e-27  Score=162.40  Aligned_cols=102  Identities=23%  Similarity=0.361  Sum_probs=89.5

Q ss_pred             CCCCCCCceeecCCHHHHHHHhc--CCCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCH
Q psy12508          5 KPLDQRNWYHGSVTRHEAENILR--NSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSV   82 (113)
Q Consensus         5 ~~l~~~~w~~g~i~r~~ae~lL~--~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl   82 (113)
                      |+++.++||||.|+|++||++|+  ..++|+||||.|.+.+|.|+||++.++.++||+|.... +|.|.+.+ ...|+||
T Consensus         1 d~~~~~~Wyhg~isR~~Ae~lL~~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~-~g~~~l~~-~~~F~sl   78 (254)
T 2oq1_A            1 DPAAHLPFFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQL-NGTYAIAG-GKAHCGP   78 (254)
T ss_dssp             CTTTTCTTBCBSCCHHHHHHHHHHTTCCTTCEEEEECSSSTTCEEEEEEETTEEEEEEEEECT-TSCEEETT-SCCBSSH
T ss_pred             CccccCCccCCCCCHHHHHHHHhccCCCCcEEEEEeCCCCCCCEEEEEEECCeEEEEEEEEeC-CCCEEeCC-CCccCCH
Confidence            46788999999999999999995  35899999999999899999999999999999999854 58899976 4799999


Q ss_pred             HHHHHHHhhCCcccCCCcceEecCcccccC
Q psy12508         83 PEMIQHFAENRLPILGAEHMCLLHPMIEQL  112 (113)
Q Consensus        83 ~~lv~~y~~~~~~~~~~~~~~L~~pv~~~~  112 (113)
                      .+||+||+.++..    ..+.|+.||+++.
T Consensus        79 ~~LV~~y~~~~~~----l~~~L~~p~~~~~  104 (254)
T 2oq1_A           79 AELCEFYSRDPDG----LPCNLRKPCNRPS  104 (254)
T ss_dssp             HHHHHHHHHCCTT----SSSCCCSBCCCCT
T ss_pred             HHHHHHHHhCCCC----cccccccccCCCC
Confidence            9999999999764    3457999988754

>2el8_A Signal-transducing adaptor protein 2; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction, structural genomics; NMR {Homo sapiens}

Probab=99.95  E-value=1e-28  Score=150.73  Aligned_cols=91  Identities=21%  Similarity=0.314  Sum_probs=80.2

Q ss_pred             CCCCCCCceeecCCHHHHHHHhcC-CCCceEEEEecCCCCCcEEEEEEe----CCeeEEEEEEecCCCCcEEECcCCCCC
Q psy12508          5 KPLDQRNWYHGSVTRHEAENILRN-SNEGSYLVRNSESNRPDYSLSLKS----ARGFMHMKIQRDPDTGKFILGQFSAPF   79 (113)
Q Consensus         5 ~~l~~~~w~~g~i~r~~ae~lL~~-~~~G~FLvR~s~~~~~~~~Lsv~~----~~~v~h~~I~~~~~~~~~~~~~~~~~F   79 (113)
                      ..++.++||||.|+|++||++|.. +++|+||||+|++.+|.|+|||+.    ++.|+||+|...  +|.|.+.. ...|
T Consensus        16 r~~~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~~~~~v~H~~I~~~--~g~~~i~~-~~~F   92 (118)
T 2el8_A           16 RRALETPSCFLKVSRLEAQLLLERYPECGNLLLRPSGDGADGVSVTTRQMHNGTHVVRHYKVKRE--GPKYVIDV-EQPF   92 (118)
T ss_dssp             CCCSSSCTTCCCCCHHHHHHHHHHSSTTCSBEEEECCSSSSSEEEEECCCBTTBCCCEEECBCCB--TTBCCBSS-SSCC
T ss_pred             ccccCCCceecCCCHHHHHHHHhhCCCCcEEEEeeCCCCCCceEEEEEEecCCCCcEEEEEEEEc--CCEEEEeC-CCeE
Confidence            467889999999999999999964 689999999999989999999999    788999999884  48888876 4789


Q ss_pred             --CCHHHHHHHHhhCCcccCC
Q psy12508         80 --DSVPEMIQHFAENRLPILG   98 (113)
Q Consensus        80 --~sl~~lv~~y~~~~~~~~~   98 (113)
                        +||.+||+||+.+++.+..
T Consensus        93 ~~~sL~eLV~~y~~~~~gl~~  113 (118)
T 2el8_A           93 SCTSLDAVVNYFVSHTKKALV  113 (118)
T ss_dssp             CCSSHHHHHHHHHHHSSSCCC
T ss_pred             CCCCHHHHHHHHhhCCCCCeE
Confidence              9999999999999886543

>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A

Probab=99.95  E-value=2.2e-28  Score=173.31  Aligned_cols=108  Identities=30%  Similarity=0.561  Sum_probs=92.6

Q ss_pred             CCCCCCCCCCCceeecCCHHHHHHHhcCCCCceEEEEecCCC-CCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCC
Q psy12508          1 MANPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESN-RPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPF   79 (113)
Q Consensus         1 ~~~~~~l~~~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~-~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F   79 (113)
                      |+...+++.++||||.|+|.+|+.+|...++|+||||.|.+. +|.|+|||+.++.++||+|...+  |.|.+.+ ...|
T Consensus         1 ~~~s~sL~~~~WYhG~IsR~eAE~lL~~~~dG~FLVR~S~s~~~g~y~LSvr~~~~v~H~rI~~~~--g~y~l~~-~~~F   77 (373)
T 3hhm_B            1 MNNNMSLQNAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHRD--GKYGFSD-PLTF   77 (373)
T ss_dssp             ----CGGGGCTTEEESCCHHHHHHHTTTCCTTEEEEEECSCC--CCEEEEEEETTEEEEEEECCSS--SCBCSSS-SCCB
T ss_pred             CCCCCCcccCCccCCCCCHHHHHHHhcCCCCCCEEEeccCCCCCCCEEEEEEECCeeEEEEEEecC--CeEEeCC-CCCc
Confidence            667789999999999999999999998889999999999987 89999999999999999999764  7888876 4789


Q ss_pred             CCHHHHHHHHhhCCcccC-CCcceEecCccccc
Q psy12508         80 DSVPEMIQHFAENRLPIL-GAEHMCLLHPMIEQ  111 (113)
Q Consensus        80 ~sl~~lv~~y~~~~~~~~-~~~~~~L~~pv~~~  111 (113)
                      +||.+||+||+.++++.. .+..+.|+.||+++
T Consensus        78 ~SL~eLV~~Y~~~~l~~~~~gl~~~L~~Pv~r~  110 (373)
T 3hhm_B           78 SSVVELINHYRNESLAQYNPKLDVKLLYPVSKY  110 (373)
T ss_dssp             SSSHHHHHHHHHSCGGGSCTTCCCCCCEECCSC
T ss_pred             CCHHHHHHHHhhCCccccCCCCCcccCCCCCCc
Confidence            999999999999998643 33468999999985

>3maz_A Signal-transducing adaptor protein 1; modular domain, phosphotyrosine, specificity, cytoplasm, phosphoprotein, SH2 domain, signaling protein; HET: PTR; 1.90A {Homo sapiens}

Probab=99.95  E-value=6e-28  Score=147.08  Aligned_cols=98  Identities=15%  Similarity=0.238  Sum_probs=80.0

Q ss_pred             CCCCCCCceeecCCHHHHHHHhcC-CCCceEEEEecCCCCCcEEEEEEe---CCeeEEEEEEecCCCCcEEECcC-CCCC
Q psy12508          5 KPLDQRNWYHGSVTRHEAENILRN-SNEGSYLVRNSESNRPDYSLSLKS---ARGFMHMKIQRDPDTGKFILGQF-SAPF   79 (113)
Q Consensus         5 ~~l~~~~w~~g~i~r~~ae~lL~~-~~~G~FLvR~s~~~~~~~~Lsv~~---~~~v~h~~I~~~~~~~~~~~~~~-~~~F   79 (113)
                      +.++.+|||+|+|+|.+||++|.. ..+|+||||.|+..+ .|+|||+.   .+.|+||+|.+.+  |.|++... ...|
T Consensus        10 ~~l~~epWff~~isR~eAE~lL~~~~~~GaFLVR~Se~~~-~ySLSVR~~~~~~~VKHYkI~~~~--G~y~I~~~~~~~F   86 (125)
T 3maz_A           10 DVLNPMPACFYTVSRKEATEMLQKNPSLGNMILRPGSDSR-NYSITIRQEIDIPRIKHYKVMSVG--QNYTIELEKPVTL   86 (125)
T ss_dssp             -CCCCCCTTBCCCCHHHHHHHHHHCGGGCSEEEEECTTSS-SEEEEEEECSSSCEEEEEEEEEET--TEEEECSSSCEEE
T ss_pred             ccccCCCCCcCCCCHHHHHHHHhccCCCCcEEEEeCCCCC-CEEEEEEecCCCCCEeeeEEEEeC--CEEEEecCCCcCc
Confidence            578889999999999999998854 468999999998765 89999998   5789999999884  88998842 3579


Q ss_pred             CCHHHHHHHHhhCCcccCCCcceEecCccc
Q psy12508         80 DSVPEMIQHFAENRLPILGAEHMCLLHPMI  109 (113)
Q Consensus        80 ~sl~~lv~~y~~~~~~~~~~~~~~L~~pv~  109 (113)
                      +||.|||+||++++..+    .+.|..|+.
T Consensus        87 ~SL~eLV~yY~~~adGl----~~~L~~~c~  112 (125)
T 3maz_A           87 PNLFSVIDYFVKETRGN----LRPFIASTD  112 (125)
T ss_dssp             SSHHHHHHHHHHHTTTC----CCBCCC---
T ss_pred             CCHHHHHHHHHhCCCcC----ccccccccc
Confidence            99999999999998854    346777764

>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3 domain, structural genomics center for structural genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A* 1x27_A*

Probab=99.95  E-value=1.9e-27  Score=153.72  Aligned_cols=100  Identities=26%  Similarity=0.496  Sum_probs=87.4

Q ss_pred             CCCCCCCceeecCCHHHHHHHhcC--CCCceEEEEecCCCCCcEEEEEEe-----CCeeEEEEEEecCCCCcEEECcCCC
Q psy12508          5 KPLDQRNWYHGSVTRHEAENILRN--SNEGSYLVRNSESNRPDYSLSLKS-----ARGFMHMKIQRDPDTGKFILGQFSA   77 (113)
Q Consensus         5 ~~l~~~~w~~g~i~r~~ae~lL~~--~~~G~FLvR~s~~~~~~~~Lsv~~-----~~~v~h~~I~~~~~~~~~~~~~~~~   77 (113)
                      ..++.++||||.|+|.+||++|..  .++|+||||.|.+.+|.|+||++.     ++.++||+|.+.. +|.|++.+ ..
T Consensus        69 ~~l~~~~w~~g~isr~~ae~lL~~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~~~~~~v~H~~I~~~~-~g~~~~~~-~~  146 (175)
T 4d8k_A           69 NSLEPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLD-NGGFYISP-RI  146 (175)
T ss_dssp             TCSTTCTTBCSSCCHHHHHHHHHSTTCCTTCEEEEECSSSTTCEEEEEEEECTTSCEEEEEEEEEECS-SSCEESST-TS
T ss_pred             ccccccceecCcccHHHHHHHHhcCCCCCCEEEEEECCCCCCeEEEEEEeCcccCCCceEEEEEEECC-CCCEEECC-CC
Confidence            457889999999999999999975  479999999999889999999998     6789999999865 57888876 57


Q ss_pred             CCCCHHHHHHHHhhCCcccCCCcceEecCcccc
Q psy12508         78 PFDSVPEMIQHFAENRLPILGAEHMCLLHPMIE  110 (113)
Q Consensus        78 ~F~sl~~lv~~y~~~~~~~~~~~~~~L~~pv~~  110 (113)
                      .|+||.+||+||+.++..+    .+.|+.||++
T Consensus       147 ~F~sl~~LV~~y~~~~~gl----~~~L~~Pc~~  175 (175)
T 4d8k_A          147 TFPGLHELVRHYTNASDGL----CTRLSRPCQT  175 (175)
T ss_dssp             EESSHHHHHHHHHHCCTTS----SSCCCSBCCC
T ss_pred             ccCCHHHHHHHHhhCCCCC----cccCCCcCCC
Confidence            9999999999999988654    4589999864

>2bbu_A Suppressor of cytokine signaling 3; SH2 domain, extended SH2 subdomain, PEST motif, protein complex, cytokine regulator; HET: PTR; NMR {Mus musculus}

Probab=99.95  E-value=1.8e-28  Score=156.96  Aligned_cols=100  Identities=26%  Similarity=0.422  Sum_probs=84.2

Q ss_pred             CCCCCCceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcC------CCCC
Q psy12508          6 PLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQF------SAPF   79 (113)
Q Consensus         6 ~l~~~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~------~~~F   79 (113)
                      .++.++||||.|+|++||++|++.++|+||||+|.+.++.|+|||+.++.++||+|...  +|.|.+.+.      ...|
T Consensus        19 ~L~~~~WyhG~IsR~eAe~lL~~~~~GtFLVR~S~s~~g~y~LSvr~~~~v~H~rI~~~--~g~f~l~~~~~~~~~~~~F   96 (164)
T 2bbu_A           19 KLQESGFYWSAVTGGEANLLLSAEPAGTFLIRDSSDQRHFFTLSVKTQSGTKNLRIQCE--GGSFSLQSDPRSTQPVPRF   96 (164)
T ss_dssp             HHHHTSCCCTTSCHHHHHHHHHHSSTTCCEEEECSTTSCCEEEEECCTTCCEEEECEEE--TTEEESSSCCCCCSSCTTC
T ss_pred             hhccCCccCCCCCHHHHHHHhcCCCCCCEEEEECCCCCCCEEEEEEECCceEEEEEEeC--CCeEEEecCcccccCCCcc
Confidence            45678999999999999999987899999999999888999999999999999999985  488999873      2689


Q ss_pred             CCHHHHHHHHhhCCcccCCCcceEecCccc
Q psy12508         80 DSVPEMIQHFAENRLPILGAEHMCLLHPMI  109 (113)
Q Consensus        80 ~sl~~lv~~y~~~~~~~~~~~~~~L~~pv~  109 (113)
                      +||.+||+||+.+++.  .+....|+-|++
T Consensus        97 ~SL~eLV~~Y~~~~~~--~~~~~~l~ep~~  124 (164)
T 2bbu_A           97 DCVLKLVHHYMPPPGT--PSFSLPPTEPSS  124 (164)
T ss_dssp             CHHHHHHHHHSCCCSC--SCCSSSCSSCCS
T ss_pred             CCHHHHHHHHhhCCCC--CCccccccCCCc
Confidence            9999999999998874  122334555544

>2oq1_A Tyrosine-protein kinase ZAP-70; tandem SH2 domains, ZAP-70, tyrosine kinase, transferase; HET: PTR; 1.90A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1m61_A

Probab=99.95  E-value=2.3e-27  Score=161.29  Aligned_cols=98  Identities=27%  Similarity=0.502  Sum_probs=87.3

Q ss_pred             CCCCCCceeecCCHHHHHHHhcCC--CCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCHH
Q psy12508          6 PLDQRNWYHGSVTRHEAENILRNS--NEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSVP   83 (113)
Q Consensus         6 ~l~~~~w~~g~i~r~~ae~lL~~~--~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl~   83 (113)
                      .++.++||||.|+|++||++|++.  ++|+||||.| +.+|.|+|||+.++.++||+|.... +|.|.+.+ ...|+||.
T Consensus       155 ~l~~~~Wyhg~isR~~Ae~lL~~~g~~~G~FLVR~S-~~~g~~~LSv~~~~~v~H~~I~~~~-~g~~~~~~-~~~F~sl~  231 (254)
T 2oq1_A          155 AHERMPWYHSSLTREEAERKLYSGAQTDGKFLLRPR-KEQGTYALSLIYGKTVYHYLISQDK-AGKYCIPE-GTKFDTLW  231 (254)
T ss_dssp             GGGGSTTBCSSCCHHHHHHHHHSSCCCTTEEEEEEC-SSTTEEEEEEEETTEEEEEEEEECT-TSCEESTT-SCCBSSHH
T ss_pred             ccCCCcccccCCCHHHHHHHHHhcCCCCceEEEEec-CCCCCEEEEEEECCeEEEEEEEEcC-CCCEEECC-CceECCHH
Confidence            567889999999999999999863  8999999999 7789999999999999999999875 68899876 48999999


Q ss_pred             HHHHHHhhCCcccCCCcceEecCcccc
Q psy12508         84 EMIQHFAENRLPILGAEHMCLLHPMIE  110 (113)
Q Consensus        84 ~lv~~y~~~~~~~~~~~~~~L~~pv~~  110 (113)
                      +||+||+.++..+    .+.|+.||++
T Consensus       232 ~LV~~y~~~~~~l----~~~L~~p~~r  254 (254)
T 2oq1_A          232 QLVEYLKLKADGL----IYCLKEACPN  254 (254)
T ss_dssp             HHHHHHHHCCTTS----SSCCCSBCCC
T ss_pred             HHHHHHHhCCCCC----CeeCCccCcC
Confidence            9999999998754    4589999975

>1a81_A SYK kinase; complex (transferase-peptide), SYK, kinase, SH2 domain; HET: PTR; 3.00A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1csy_A* 1csz_A*

Probab=99.95  E-value=5.8e-27  Score=159.28  Aligned_cols=99  Identities=22%  Similarity=0.396  Sum_probs=86.9

Q ss_pred             CCCCCceeecCCHHHHHHHhcC--CCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCHHH
Q psy12508          7 LDQRNWYHGSVTRHEAENILRN--SNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSVPE   84 (113)
Q Consensus         7 l~~~~w~~g~i~r~~ae~lL~~--~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl~~   84 (113)
                      .+.++||||.|+|++||++|.+  .++|+||||+|.+.+|.|+|||+.++.++||+|.... +|.|.+.+ ...|+||.+
T Consensus         2 ~~~~~Wy~g~isR~~Ae~lL~~~g~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~-~g~~~l~~-~~~F~sl~e   79 (254)
T 1a81_A            2 ANHLPFFFGNITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRKAHHYTIEREL-NGTYAIAG-GRTHASPAD   79 (254)
T ss_dssp             TTSSTTBCSSCCHHHHHHHHHHTTCCTTEEEEEECSSSTTCEEEEEEETTEEEEEEEEECT-TSCEEETT-SCCBSSHHH
T ss_pred             CccCccccCCCCHHHHHHHHhcCCCCCcEEEEEecCCCCCCEEEEEEECCeeEEEEEEEcC-CCCEEeCC-CCCcCCHHH
Confidence            5678999999999999999963  4899999999999899999999999999999999865 58899986 579999999


Q ss_pred             HHHHHhhCCcccCCCcceEecCccccc
Q psy12508         85 MIQHFAENRLPILGAEHMCLLHPMIEQ  111 (113)
Q Consensus        85 lv~~y~~~~~~~~~~~~~~L~~pv~~~  111 (113)
                      ||+||+.++..+    .+.|+.|++++
T Consensus        80 Lv~~y~~~~~~l----~~~L~~p~~~~  102 (254)
T 1a81_A           80 LCHYHSQESDGL----VCLLKKPFNRP  102 (254)
T ss_dssp             HHHHHTTCCTTS----SSCCCEECCCC
T ss_pred             HHHHHHhCCCCc----eECCccccCCC
Confidence            999999987643    45788888765

>1a81_A SYK kinase; complex (transferase-peptide), SYK, kinase, SH2 domain; HET: PTR; 3.00A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1csy_A* 1csz_A*

Probab=99.95  E-value=3.2e-27  Score=160.57  Aligned_cols=99  Identities=25%  Similarity=0.520  Sum_probs=88.1

Q ss_pred             CCCCCCCceeecCCHHHHHHHhcCC--CCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCH
Q psy12508          5 KPLDQRNWYHGSVTRHEAENILRNS--NEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSV   82 (113)
Q Consensus         5 ~~l~~~~w~~g~i~r~~ae~lL~~~--~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl   82 (113)
                      ..++.++||||.|+|++||++|++.  ++|+||||.| +.+|.|+||++.++.++||+|.... +|.|++.+ ...|+||
T Consensus       153 ~~~~~~~Wyhg~isR~~Ae~lL~~~g~~~G~FLVR~S-~~~g~~~LSv~~~~~v~H~~I~~~~-~g~~~l~~-~~~F~sl  229 (254)
T 1a81_A          153 TAHEKMPWFHGKISREESEQIVLIGSKTNGKFLIRAR-DNNGSYALCLLHEGKVLHYRIDKDK-TGKLSIPE-GKKFDTL  229 (254)
T ss_dssp             TSGGGSTTEEEECCHHHHHHHHHSSCCCTTCEEEEEC-SSSSCEEEEEEETTEEEEEEEEECT-TSCEECTT-SCCBSCH
T ss_pred             cccccCCccccCCCHHHHHHHHHhcCCCCceEEEEec-CCCCCEEEEEEECCEEEEEEEEEcC-CCCEEecC-CcccCCH
Confidence            4677899999999999999999863  8999999999 7789999999999999999999875 68899876 4899999


Q ss_pred             HHHHHHHhhCCcccCCCcceEecCcccc
Q psy12508         83 PEMIQHFAENRLPILGAEHMCLLHPMIE  110 (113)
Q Consensus        83 ~~lv~~y~~~~~~~~~~~~~~L~~pv~~  110 (113)
                      .+||+||+.++..    ..+.|+.||++
T Consensus       230 ~~LV~~y~~~~~~----l~~~L~~p~~r  253 (254)
T 1a81_A          230 WQLVEHYSYKADG----LLRVLTVPCQK  253 (254)
T ss_dssp             HHHHHHHTTCCTT----SSSCCCCBCCC
T ss_pred             HHHHHHHHHCCCC----CCeecCCcCCC
Confidence            9999999999864    34689999986

>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}

Probab=99.95  E-value=1.2e-27  Score=165.36  Aligned_cols=104  Identities=29%  Similarity=0.481  Sum_probs=89.2

Q ss_pred             CCCCCCceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCHHHH
Q psy12508          6 PLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSVPEM   85 (113)
Q Consensus         6 ~l~~~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl~~l   85 (113)
                      .+..++||||.|+|.+|+.+|...++|+||||.| +.+|.|+|||+.++.|+||+|...+ +| |.+......|+||.+|
T Consensus       190 ~l~~~~WyhG~IsR~eAE~lL~~~~~GtFLVR~S-s~~g~y~LSv~~~~~V~H~rI~~~~-~g-~~~~~~~~~F~SL~eL  266 (302)
T 2y3a_B          190 HHEERTWYVGKINRTQAEEMLSGKRDGTFLIRES-SQRGCYACSVVVDGDTKHCVIYRTA-TG-FGFAEPYNLYGSLKEL  266 (302)
T ss_dssp             GGSSTTTBCCSCCHHHHHHHHTTSCTTBEEBCCC-SSTTCEEEEEECSSSEEEEEEEEET-TE-EESBTTBCCCSSHHHH
T ss_pred             cccCCCccCCCCCHHHHHHHhcCCCCCcEEEEec-cCCCceEEEEEeCCeeEEEEEEECC-Cc-eEEeCCCCCCCCHHHH
Confidence            5677899999999999999997779999999999 7789999999999999999999876 34 5554434789999999


Q ss_pred             HHHHhhCCcccC-CCcceEecCcccccC
Q psy12508         86 IQHFAENRLPIL-GAEHMCLLHPMIEQL  112 (113)
Q Consensus        86 v~~y~~~~~~~~-~~~~~~L~~pv~~~~  112 (113)
                      |+||+.++++.. ++..+.|+.||+++.
T Consensus       267 V~~Y~~~~L~~~~~gl~~~L~~Pv~~~~  294 (302)
T 2y3a_B          267 VLHYQHASLVQHNDALTVTLAHPVRAPG  294 (302)
T ss_dssp             HHTTSSSCSTTTCSSCCCCCSBCSCCCC
T ss_pred             HHHHHhCCccccCCCCceeeCCccCCCC
Confidence            999999987642 345789999999853

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A

Probab=99.95  E-value=1.8e-28  Score=164.62  Aligned_cols=102  Identities=26%  Similarity=0.540  Sum_probs=88.9

Q ss_pred             CCCCCCCCCceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCC---------------
Q psy12508          3 NPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDT---------------   67 (113)
Q Consensus         3 ~~~~l~~~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~---------------   67 (113)
                      +.++++.++||||.|+|++||++|+..++|+||||+|.+.+|.|+|||+.++.++||+|.+.++.               
T Consensus         6 ~~~~l~~~~WyhG~isR~eAe~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~~~~~~~~~~~~~g~~   85 (230)
T 2dvj_A            6 NFDSEERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVPPSPAQPPPGVS   85 (230)
T ss_dssp             CCCSSSSSSSCCSSCCTTHHHHHHTTSSSSCBEEECCSSCTTSCEEECCCSSSCCCEECBCCCSCCSSSSSSSSTTTSCC
T ss_pred             ccccccCCCcccCCCCHHHHHHHhcCCCCceEEEEeCCCCCCCEEEEEEECCEEEEEEEEeCCCCccccccccccccccc
Confidence            45789999999999999999999987889999999999989999999999999999999876521               


Q ss_pred             -CcEEECcCCCCCCCHHHHHHHHhhCCcccCCCcceEecCccccc
Q psy12508         68 -GKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQ  111 (113)
Q Consensus        68 -~~~~~~~~~~~F~sl~~lv~~y~~~~~~~~~~~~~~L~~pv~~~  111 (113)
                       +.|.+..  ..|+||.+||+||+.+++.     .+.|+.||+++
T Consensus        86 ~~~~~~~~--~~F~sl~~LV~~y~~~~l~-----~~~L~~Pv~~~  123 (230)
T 2dvj_A           86 PSRLRIGD--QEFDSLPALLEFYKIHYLD-----TTTLIEPVSRS  123 (230)
T ss_dssp             CCCEESSS--CEESSHHHHHTTSTTTCSS-----SSCCCCBCCSC
T ss_pred             ceEEEeCC--ceeCCHHHHHHHHhhCccc-----ccccccccccc
Confidence             4677754  7999999999999999864     35788998875

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans}

Probab=99.94  E-value=4.2e-27  Score=152.00  Aligned_cols=101  Identities=27%  Similarity=0.513  Sum_probs=85.1

Q ss_pred             CCCCCCCCCceeecCCHHHHHHHhcC--CCCceEEEEecCCCCCcEEEEEEeCCe---eEEEEEEe---cCCC---CcEE
Q psy12508          3 NPKPLDQRNWYHGSVTRHEAENILRN--SNEGSYLVRNSESNRPDYSLSLKSARG---FMHMKIQR---DPDT---GKFI   71 (113)
Q Consensus         3 ~~~~l~~~~w~~g~i~r~~ae~lL~~--~~~G~FLvR~s~~~~~~~~Lsv~~~~~---v~h~~I~~---~~~~---~~~~   71 (113)
                      .-++++.++||||.|+|++||++|++  .++|+||||.| +.++.|+||++.+++   ++||+|..   ..++   +.|.
T Consensus         5 ~~~~l~~~~Wyhg~isR~~Ae~lL~~~~~~~G~FLVR~S-~~~g~y~LSv~~~~~~~~v~H~~I~~~~~~~~g~~~~~~~   83 (174)
T 3qwx_X            5 GFDPFEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRDS-SRPGEYSLTVREADEGNAVCHYLIERGEPKEDGTAAAGVK   83 (174)
T ss_dssp             CSCGGGGGGGEETTCCHHHHHHHHHSTTCCTTEEEEEEC-SSTTCEEEEEECCSSSSCEEEEEEEECCCCTTSSSCCCEE
T ss_pred             ccCccccCCCccCCCCHHHHHHHHhccCCCCCeEEEEec-CCCCCEEEEEEECCCCCceEEEEEEeccCCCCCcccceEE
Confidence            34788999999999999999999986  46899999999 888999999999988   99999988   3322   5898


Q ss_pred             ECcCCCCCCCHHHHHHHHhhCCcccCCCcceEecCccccc
Q psy12508         72 LGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQ  111 (113)
Q Consensus        72 ~~~~~~~F~sl~~lv~~y~~~~~~~~~~~~~~L~~pv~~~  111 (113)
                      +.  ...|+||.+||+||+.+++.     .+.|..|++++
T Consensus        84 ~~--~~~F~sl~eLv~~y~~~~~~-----~~~L~~P~~~p  116 (174)
T 3qwx_X           84 IA--NQSFPDIPALLNHFKMRVLT-----EASLLAAYKKP  116 (174)
T ss_dssp             ET--TEEESSHHHHHHHTTSSCSS-----SCCCCEECCCC
T ss_pred             EC--CeecCcHHHHhhhhhcCccc-----ccccccccccc
Confidence            86  47999999999999998762     23577777664

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A*

Probab=99.90  E-value=1e-28  Score=171.59  Aligned_cols=103  Identities=29%  Similarity=0.544  Sum_probs=92.1

Q ss_pred             CCCCCCCCCCCceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCC
Q psy12508          1 MANPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFD   80 (113)
Q Consensus         1 ~~~~~~l~~~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~   80 (113)
                      |+.-+.++.++||||.|+|++||++|+..++|+||||.|.+.+|.|+|||+.++.++||+|.+.. +|.|.+.+  ..|+
T Consensus         3 ~~~~d~~~~~~Wyhg~isR~~Ae~lL~~~~~G~FLvR~S~~~~g~~~LSv~~~~~v~H~~I~~~~-~g~~~~~~--~~F~   79 (303)
T 2lqn_A            3 SARFDSSDRSAWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLP-NRRFKIGD--QEFD   79 (303)
Confidence            45668899999999999999999999877899999999998899999999999999999999865 57788875  7999


Q ss_pred             CHHHHHHHHhhCCcccCCCcceEecCccccc
Q psy12508         81 SVPEMIQHFAENRLPILGAEHMCLLHPMIEQ  111 (113)
Q Consensus        81 sl~~lv~~y~~~~~~~~~~~~~~L~~pv~~~  111 (113)
                      ||.+||+||+++++     ..+.|+.||.++
T Consensus        80 sl~~Lv~~y~~~~~-----~~~~L~~P~~r~  105 (303)
T 2lqn_A           80 HLPALLEFYKIHYL-----DTTTLIEPAPRY  105 (303)
Confidence            99999999999987     246799999874

>4fbn_A 1-phosphatidylinositol 4,5-bisphosphate phosphodi gamma-1; SH2 domain, plcgamma specific array, interaction domain, FIB growth factor receptor 1; 2.40A {Homo sapiens} PDB: 4ey0_A* 3gqi_B* 2fci_A* 2pld_A* 2ple_A*

Probab=99.94  E-value=1.4e-26  Score=156.81  Aligned_cols=99  Identities=28%  Similarity=0.602  Sum_probs=85.8

Q ss_pred             CCCCCCCCceeecCCHHHHHHHhcC-CCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCH
Q psy12508          4 PKPLDQRNWYHGSVTRHEAENILRN-SNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSV   82 (113)
Q Consensus         4 ~~~l~~~~w~~g~i~r~~ae~lL~~-~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl   82 (113)
                      ...++.++||||.|+|.+||.+|.. +.+|+||||.|+ .++.|+||++.++.++|++|...+  +.|.+++  ..|+||
T Consensus       116 ~~~~~~~~Wyhg~isr~~Ae~lL~~~~~~G~FLVR~s~-~~g~y~Lsv~~~~~v~H~~I~~~~--~~~~~~~--~~F~sL  190 (246)
T 4fbn_A          116 TNAHESKEWYHASLTRAQAEHMLMRVPRDGAFLVRKRN-EPNSYAISFRAEGKIKHCRVQQEG--QTVMLGN--SEFDSL  190 (246)
T ss_dssp             SCGGGGSTTEESSCCHHHHHHHHHTSCCTTEEEEEECS-STTEEEEEEEETTEEEEEEEEEET--TEEEETT--EEESCH
T ss_pred             cCCcccCCeeecCccHHHHHHHHhhCCCCCeEEEEecC-CCCCEEEEEEeCCCeEEEEEEeCC--CEEEeCC--CccCCH
Confidence            4567789999999999999999976 468999999984 478999999999999999999764  6677765  689999


Q ss_pred             HHHHHHHhhCCcccCCCcceEecCccccc
Q psy12508         83 PEMIQHFAENRLPILGAEHMCLLHPMIEQ  111 (113)
Q Consensus        83 ~~lv~~y~~~~~~~~~~~~~~L~~pv~~~  111 (113)
                      .+||+||+++++.    ..+.|+.||+++
T Consensus       191 ~~Lv~~y~~~p~~----~~~~L~~Pv~~~  215 (246)
T 4fbn_A          191 VDLISYYEKHPLY----RKMKLRYPINEE  215 (246)
T ss_dssp             HHHHHHHHHSCSB----TTBCCCEECSHH
T ss_pred             HHHHHHhCcCCCC----CCcCCCCcCCCc
Confidence            9999999999885    456899999875

>4fbn_A 1-phosphatidylinositol 4,5-bisphosphate phosphodi gamma-1; SH2 domain, plcgamma specific array, interaction domain, FIB growth factor receptor 1; 2.40A {Homo sapiens} PDB: 4ey0_A* 3gqi_B* 2fci_A* 2pld_A* 2ple_A*

Probab=99.94  E-value=1.3e-26  Score=156.89  Aligned_cols=101  Identities=34%  Similarity=0.561  Sum_probs=82.2

Q ss_pred             CCCCceeecC-----CHHHHHHHhc------CCCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCC--CcEEECc
Q psy12508          8 DQRNWYHGSV-----TRHEAENILR------NSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDT--GKFILGQ   74 (113)
Q Consensus         8 ~~~~w~~g~i-----~r~~ae~lL~------~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~--~~~~~~~   74 (113)
                      ..+|||||.|     +|.+||++|+      ..++|+||||+|.+.+|.|+|||+.+++++||+|...+++  +.|++.+
T Consensus         2 ~~e~WfhG~i~~~~~sR~~AE~lL~~~~~~~~~~dG~FLVR~S~s~~G~y~LSv~~~~~v~H~~I~~~~~~g~~~~~~~~   81 (246)
T 4fbn_A            2 SNEKWFHGKLGAGRDGRHIAERLLTEYCIETGAPDGSFLVRESETFVGDYTLSFWRNGKVQHCRIHSRQDAGTPKFFLTD   81 (246)
T ss_dssp             -CCTTBCCCCSCC-CHHHHHHHHHHHHHHHHTCCTTCEEEEECSSSTTCEEEEEEETTEEEEEEEEEECGGGCCEEEEET
T ss_pred             CCCCCcCCccccccCCHHHHHHHHHHhhhccCCCCCEEEEEcCCCCCCCEEEEEEECCEEEEEEEEEECCCCceeEEecC
Confidence            4689999999     7999999995      3589999999999999999999999999999999876522  2577765


Q ss_pred             CCCCCCCHHHHHHHHhhCCcccCCCcceEecCcccc
Q psy12508         75 FSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIE  110 (113)
Q Consensus        75 ~~~~F~sl~~lv~~y~~~~~~~~~~~~~~L~~pv~~  110 (113)
                       ...|+||.+||+||+++++...+ ....|..|++.
T Consensus        82 -~~~F~sl~~LV~~y~~~~l~~~~-~~~~l~~p~p~  115 (246)
T 4fbn_A           82 -NLVFDSLYDLITHYQQVPLRCNE-FEMRLSEPVPQ  115 (246)
T ss_dssp             -TEEESSHHHHHHHHHHSCEECSS-CEECCCCBCCC
T ss_pred             -CcccCCHHHHHHhHhhccccccc-ccccccccccc
Confidence             47899999999999999875432 34555555543

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A

Probab=99.94  E-value=1.1e-27  Score=166.43  Aligned_cols=101  Identities=27%  Similarity=0.555  Sum_probs=88.9

Q ss_pred             CCCCCCCCCceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEec-----------------C
Q psy12508          3 NPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRD-----------------P   65 (113)
Q Consensus         3 ~~~~l~~~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~-----------------~   65 (113)
                      +-++++.++||||.|+|++||++|+..++|+||||.|.+.+|.|+|||+.++.++||+|.+.                 .
T Consensus         4 ~~~~~~~~~WyhG~isR~eAe~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~~~~~~~~~~~~~~~~   83 (304)
T 2eyz_A            4 NFDSEERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVPPSPAQPPPGVS   83 (304)
T ss_dssp             SCCCSSSSSSCCCCCCSSHHHHTTTTCCSSCEECCSCCSSSSCCEEEECSSSSCEEEECCCCSSCCSSCCCCCCCSSSSS
T ss_pred             ccccccCCCCccCCCCHHHHHHHhcCCCCCEEEEEeCCCCCCCEEEEEEECCEEEEEEEeeccccccccccccccccccC
Confidence            44789999999999999999999987899999999999988999999999999999999982                 2


Q ss_pred             CCCcEEECcCCCCCCCHHHHHHHHhhCCcccCCCcceEecCccccc
Q psy12508         66 DTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQ  111 (113)
Q Consensus        66 ~~~~~~~~~~~~~F~sl~~lv~~y~~~~~~~~~~~~~~L~~pv~~~  111 (113)
                       .+.|.+..  ..|+||.+||+||+.+++.     .+.|+.||+++
T Consensus        84 -~~~~~~~~--~~F~sl~~LV~~y~~~~l~-----~~~L~~P~~~~  121 (304)
T 2eyz_A           84 -PSRLRIGD--QEFDSLPALLEFYKIHYLD-----TTTLIEPVSRS  121 (304)
T ss_dssp             -CCCCCBTT--BCCSCHHHHHTTTTTSCCS-----SSSSCCBCCSC
T ss_pred             -CCeEEeCC--cEECCHHHHHHHhhhCccc-----cceeccccccc
Confidence             46777764  7999999999999999763     35688898875

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=99.94  E-value=2.9e-26  Score=172.03  Aligned_cols=102  Identities=22%  Similarity=0.388  Sum_probs=89.6

Q ss_pred             CCCCCCCCceeecCCHHHHHHHhcC--CCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCC
Q psy12508          4 PKPLDQRNWYHGSVTRHEAENILRN--SNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDS   81 (113)
Q Consensus         4 ~~~l~~~~w~~g~i~r~~ae~lL~~--~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~s   81 (113)
                      .++++.+|||||.|+|.+||++|..  .++|+||||+|.+.+|.|+||++.+++++||+|.+.+ +|.|++.+ ...|+|
T Consensus         7 ~~~l~~~~Wy~g~isr~~Ae~~L~~~~~~~G~FLvR~S~~~~g~y~lsv~~~~~v~h~~i~~~~-~g~~~~~~-~~~f~s   84 (635)
T 4fl3_A            7 ADSANHLPFFFGNITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRKAHHYTIEREL-NGTYAIAG-GRTHAS   84 (635)
T ss_dssp             --CCTTCTTBCBSCCHHHHHHHHHHTTCCTTEEEEEECTTSSSCEEEEEEETTEEEEEEEEECT-TSCEESTT-CCCBSS
T ss_pred             cchhhcCCccCCCCCHHHHHHHHhcCCCCCceEEEeecccCCCCEEEEEEeCCEEEeEEEEEcC-CCCEEeCC-CCccCC
Confidence            5789999999999999999999965  4699999999999899999999999999999999876 68899876 578999


Q ss_pred             HHHHHHHHhhCCcccCCCcceEecCccccc
Q psy12508         82 VPEMIQHFAENRLPILGAEHMCLLHPMIEQ  111 (113)
Q Consensus        82 l~~lv~~y~~~~~~~~~~~~~~L~~pv~~~  111 (113)
                      |.+||+||+.++..+    .+.|++||.++
T Consensus        85 l~~Lv~~y~~~~~~l----~~~L~~p~~~~  110 (635)
T 4fl3_A           85 PADLCHYHSQESDGL----VCLLKKPFNRP  110 (635)
T ss_dssp             HHHHHHHHTTCCTTS----SSCCCEECCCC
T ss_pred             HHHHHHHHhhCCCCC----eeccCCcCCCc
Confidence            999999999998654    45788898874

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=99.93  E-value=1e-25  Score=168.39  Aligned_cols=102  Identities=24%  Similarity=0.400  Sum_probs=90.0

Q ss_pred             CCCCCCCCceeecCCHHHHHHHhcC--CCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCC
Q psy12508          4 PKPLDQRNWYHGSVTRHEAENILRN--SNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDS   81 (113)
Q Consensus         4 ~~~l~~~~w~~g~i~r~~ae~lL~~--~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~s   81 (113)
                      .++.+.+|||||.|+|.+||++|..  .++|+||||+|.+.+|.|+||++.++.++||+|.+.+ +|.|++.+ ...|.|
T Consensus         2 ~d~~~~~~W~~g~i~r~~ae~~L~~~~~~~G~fLvR~s~~~~g~~~ls~~~~~~~~h~~i~~~~-~g~~~~~~-~~~f~s   79 (613)
T 2ozo_A            2 PDPAAHLPFFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQL-NGTYAIAG-GKAHCG   79 (613)
T ss_dssp             CCTTSSCTTBCBSCCHHHHHHHHHTTTCCTTEEEEEECTTBTTCEEEEEEETTEEEEEEEEECT-TSCEEETT-SCCBSS
T ss_pred             CCCCCCCCCcCccCCHHHHHHHHhccCCCCCeEEEEecCCCCCCEEEEEEECCeEEEEEEEECC-CCcEEECC-CCCcCC
Confidence            5677889999999999999999954  5789999999999999999999999999999999875 68888876 478999


Q ss_pred             HHHHHHHHhhCCcccCCCcceEecCccccc
Q psy12508         82 VPEMIQHFAENRLPILGAEHMCLLHPMIEQ  111 (113)
Q Consensus        82 l~~lv~~y~~~~~~~~~~~~~~L~~pv~~~  111 (113)
                      |.+||+||+.++..+    .+.|+.||+++
T Consensus        80 l~~Lv~~y~~~~~~l----~~~L~~p~~~~  105 (613)
T 2ozo_A           80 PAELCEFYSRDPDGL----PCNLRKPCNRP  105 (613)
T ss_dssp             HHHHHHHHTSCCTTS----SSCCCSBCCCC
T ss_pred             HHHHHHHHhhCCCCC----CccCCccCCCC
Confidence            999999999998654    45799999875

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans}

Probab=99.92  E-value=3.6e-25  Score=154.03  Aligned_cols=101  Identities=27%  Similarity=0.536  Sum_probs=85.9

Q ss_pred             CCCCCCCCCceeecCCHHHHHHHhcC--CCCceEEEEecCCCCCcEEEEEEeCCe---eEEEEEEe-cCC-C----CcEE
Q psy12508          3 NPKPLDQRNWYHGSVTRHEAENILRN--SNEGSYLVRNSESNRPDYSLSLKSARG---FMHMKIQR-DPD-T----GKFI   71 (113)
Q Consensus         3 ~~~~l~~~~w~~g~i~r~~ae~lL~~--~~~G~FLvR~s~~~~~~~~Lsv~~~~~---v~h~~I~~-~~~-~----~~~~   71 (113)
                      +.++++.++||||.|+|++||++|..  .++|+||||+| +.+|.|+|||+.+++   |+||+|.. ..+ +    |.|+
T Consensus        34 ~~~~l~~~~Wyhg~i~R~~Ae~lL~~~~~~~G~FLVR~S-~~~g~y~LSv~~~~~~~~v~H~~I~~~~~~~~g~~~g~~~  112 (308)
T 3qwy_A           34 GFDPFEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRDS-SRPGEYSLTVREADEGNAVCHYLIERGEPKEDGTAAAGVK  112 (308)
T ss_dssp             CCCGGGGGGGEETTCCHHHHHHHHHSTTCCTTEEEEEEC-SSTTCEEEEEECCSSSSCEEEEEEEECCCCTTTTCCCCEE
T ss_pred             ccCcccccccccCCCCHHHHHHHHhccCCCCceEEEEcc-CCCCCEEEEEEeCCCCCceEEEEEeeccCCCcCcccceEE
Confidence            45678899999999999999999976  46899999999 888999999999988   99999987 431 1    7899


Q ss_pred             ECcCCCCCCCHHHHHHHHhhCCcccCCCcceEecCccccc
Q psy12508         72 LGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQ  111 (113)
Q Consensus        72 ~~~~~~~F~sl~~lv~~y~~~~~~~~~~~~~~L~~pv~~~  111 (113)
                      +.+  ..|+++.+||+||+.+++.     ...|..|+.++
T Consensus       113 ~~~--~~F~Sl~eLv~~y~~~~~~-----~~~L~~P~~~p  145 (308)
T 3qwy_A          113 IAN--QSFPDIPALLNHFKMRVLT-----EASLLAAYKKP  145 (308)
T ss_dssp             ETT--EEESSHHHHHHHHHHSCSS-----SCCCCEECCCC
T ss_pred             EeC--eeeCCHHHHHHHHhhcccc-----cchhccccccc
Confidence            985  7999999999999999873     23577777654

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=99.92  E-value=8e-25  Score=164.23  Aligned_cols=100  Identities=26%  Similarity=0.548  Sum_probs=87.2

Q ss_pred             CCCCCCCceeecCCHHHHHHHhcC--CCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCH
Q psy12508          5 KPLDQRNWYHGSVTRHEAENILRN--SNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSV   82 (113)
Q Consensus         5 ~~l~~~~w~~g~i~r~~ae~lL~~--~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl   82 (113)
                      ..++.+|||||.|+|.+||++|..  .++|+||||+| +.+|.|+||++.++.++||+|.+.. +|.|++.+ ...|+||
T Consensus       161 ~~~~~~~Wy~g~isr~~ae~~L~~~~~~~G~FLvR~s-~~~g~y~lsv~~~~~v~h~~i~~~~-~g~~~~~~-~~~F~sl  237 (635)
T 4fl3_A          161 TAHEKMPWFHGKISREESEQIVLIGSKTNGKFLIRAR-DNNGSYALCLLHEGKVLHYRIDKDK-TGKLSIPE-GKKFDTL  237 (635)
T ss_dssp             SCGGGSTTBCCSCCHHHHHHHHHSSSCCTTCEEEEES-SSSSCEEEEEEETTEEEEEEEEECT-TSCEESTT-CCCBSSH
T ss_pred             cccccCCceeccCCHHHHHHHHHcCCCCCceEEEEec-CCCCCEEEEEEECCEEEEEEEEECC-CCCEEeCC-CCccCCH
Confidence            467889999999999999999976  36999999999 5679999999999999999998876 68899987 4799999


Q ss_pred             HHHHHHHhhCCcccCCCcceEecCccccc
Q psy12508         83 PEMIQHFAENRLPILGAEHMCLLHPMIEQ  111 (113)
Q Consensus        83 ~~lv~~y~~~~~~~~~~~~~~L~~pv~~~  111 (113)
                      .+||+||+.++..+..    .|+.||.+.
T Consensus       238 ~~Lv~~y~~~~~~l~~----~L~~p~~~~  262 (635)
T 4fl3_A          238 WQLVEHYSYKADGLLR----VLTVPCQKI  262 (635)
T ss_dssp             HHHHHHHTTCCTTSSS----CCCSBCCC-
T ss_pred             HHHHHHhhhCCCCCcc----ccCccCcCc
Confidence            9999999999876544    688888763

>2shp_A SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin signaling, SH2 protein; HET: CAT; 2.00A {Homo sapiens} SCOP: c.45.1.2 d.93.1.1 d.93.1.1

Probab=99.92  E-value=9.3e-25  Score=161.00  Aligned_cols=103  Identities=29%  Similarity=0.458  Sum_probs=88.9

Q ss_pred             CCCCCceeecCCHHHHHHHhcC-CCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCHHHH
Q psy12508          7 LDQRNWYHGSVTRHEAENILRN-SNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSVPEM   85 (113)
Q Consensus         7 l~~~~w~~g~i~r~~ae~lL~~-~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl~~l   85 (113)
                      ++.++||||.|+|++||++|.+ +++|+||||.|.+.+|.|+||++.++.++||+|...  ++.|.+.+ ...|+||.+|
T Consensus         1 l~~~~Wyhg~i~r~~Ae~lL~~~~~~G~FLvR~S~~~~g~~~Lsv~~~~~v~H~~I~~~--~~~~~l~~-~~~F~sl~eL   77 (525)
T 2shp_A            1 MKSRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDLTLSVRRNGAVTHIKIQNT--GDYYDLYG-GEKFATLAEL   77 (525)
T ss_dssp             -CCSTTBCSSCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEEEETTEEEEEEEECS--SSCEEETT-SCEESSHHHH
T ss_pred             CCCCCcccCCCCHHHHHHHHHhCCCCCcEEeeccCCCCCcEEEEEEECCEEEEEEEEec--CCeEEECC-CCeECCHHHH
Confidence            4678999999999999999975 589999999999989999999999999999999865  47788876 4799999999


Q ss_pred             HHHHhhCCcccCC--CcceEecCcccccC
Q psy12508         86 IQHFAENRLPILG--AEHMCLLHPMIEQL  112 (113)
Q Consensus        86 v~~y~~~~~~~~~--~~~~~L~~pv~~~~  112 (113)
                      |+||+.++.++..  +..+.|++|++++.
T Consensus        78 v~~y~~~~~~l~~~~g~~i~L~~Pv~~~d  106 (525)
T 2shp_A           78 VQYYMEHHGQLKEKNGDVIELKYPLNCAD  106 (525)
T ss_dssp             HHHHHTCTTCSBSSSSCBCCCCEECCCCC
T ss_pred             HHHHHhCCccccccccccccccccccccc
Confidence            9999999987753  34578889988753

>3ps5_A Tyrosine-protein phosphatase non-receptor type 6; SH2, PTP, hydrolase, signaling protein; 3.10A {Homo sapiens}

Probab=99.91  E-value=3e-24  Score=160.23  Aligned_cols=100  Identities=23%  Similarity=0.432  Sum_probs=86.8

Q ss_pred             CCceeecCCHHHHHHHhcC-CCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCHHHHHHH
Q psy12508         10 RNWYHGSVTRHEAENILRN-SNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSVPEMIQH   88 (113)
Q Consensus        10 ~~w~~g~i~r~~ae~lL~~-~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl~~lv~~   88 (113)
                      +|||||.|+|.+||++|.. +++|+||||.|.+.+|.|+||++.++.++||+|...+  +.|.+.+ ...|+||.+||+|
T Consensus         2 ~~Wy~g~isr~~Ae~lL~~~~~~G~FLvR~S~~~~g~y~LSv~~~~~v~H~~I~~~~--~~~~~~~-~~~F~sl~eLv~~   78 (595)
T 3ps5_A            2 VRWFHRDLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHIRIQNSG--DFYDLYG-GEKFATLTELVEY   78 (595)
T ss_dssp             CSCCCSSCCHHHHHHHHHHHCCTTCEEEEECSSSTTSEEEEEEETTEEEEEEEEECS--SCEESSS-SCCBSSHHHHHHH
T ss_pred             CCccCCCCCHHHHHHHHhhCCCCCEEEEeecCCCCCceEEEEEECCEEEEEEEEeCC--CcEEEec-Cccccchhhhhhh
Confidence            6999999999999999975 5899999999999999999999999999999998754  7787776 4789999999999


Q ss_pred             HhhCCcccCCCc--ceEecCcccccC
Q psy12508         89 FAENRLPILGAE--HMCLLHPMIEQL  112 (113)
Q Consensus        89 y~~~~~~~~~~~--~~~L~~pv~~~~  112 (113)
                      |+.+++.+....  .+.|..|++.+.
T Consensus        79 y~~~~~~l~~~~g~~i~L~~P~~~~~  104 (595)
T 3ps5_A           79 YTQQQGVLQDRDGTIIHLKYPLNCSD  104 (595)
T ss_dssp             HHTTSSCCBCSSCCBCCCCCBCCCCC
T ss_pred             hccCcccccccccccccccccccccc
Confidence            999988776543  467888887653

>2b3o_A Tyrosine-protein phosphatase, non-receptor type 6; protein tyrosine phosphatase, SHP-1, signaling, hydrolase; 2.80A {Homo sapiens} PDB: 1x6c_A 2rmx_A* 2yu7_A*

Probab=99.91  E-value=3.2e-24  Score=158.36  Aligned_cols=99  Identities=23%  Similarity=0.445  Sum_probs=86.5

Q ss_pred             CCceeecCCHHHHHHHhcC-CCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCHHHHHHH
Q psy12508         10 RNWYHGSVTRHEAENILRN-SNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSVPEMIQH   88 (113)
Q Consensus        10 ~~w~~g~i~r~~ae~lL~~-~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl~~lv~~   88 (113)
                      +|||||.|+|.+||++|.. +++|+||||.|.+.+|.|+||++.++.++||+|...  ++.|.+.+ ...|+||.+||+|
T Consensus         2 ~~Wyhg~i~r~~Ae~lL~~~~~~G~FLvR~S~~~~g~~~Lsv~~~~~v~H~~I~~~--~~~~~~~~-~~~F~sl~~Lv~~   78 (532)
T 2b3o_A            2 VRWFHRDLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHIRIQNS--GDFYDLYG-GEKFATLTELVEY   78 (532)
T ss_dssp             CTTBCSSCCHHHHHHHHHHHCCTTEEEEEECSSSSSEEEEEEEETTEEEEEEEECS--SSCEEETT-SCEESCHHHHHHH
T ss_pred             CCceeCCCCHHHHHHHHHhcCCCCCEEEecCCCCCCceEEEEEECCEEEEEEEEec--CCEEEECC-CcccCCHHHHHHH
Confidence            6899999999999999976 489999999999989999999999999999999864  47888865 4789999999999


Q ss_pred             HhhCCcccCC--CcceEecCccccc
Q psy12508         89 FAENRLPILG--AEHMCLLHPMIEQ  111 (113)
Q Consensus        89 y~~~~~~~~~--~~~~~L~~pv~~~  111 (113)
                      |+.++.++..  +..+.|+.|++++
T Consensus        79 y~~~~~~l~~~~g~~~~L~~P~~~~  103 (532)
T 2b3o_A           79 YTQQQGVLQDRDGTIIHLKYPLNCS  103 (532)
T ss_dssp             HHTTCSCBCCSSSCCBCCCEECCCC
T ss_pred             HHhcccccccccCchhhcccccccc
Confidence            9999866653  3457899998875

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=99.91  E-value=7e-24  Score=158.52  Aligned_cols=100  Identities=26%  Similarity=0.508  Sum_probs=86.2

Q ss_pred             CCCCCCCCceeecCCHHHHHHHhcC--CCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCC
Q psy12508          4 PKPLDQRNWYHGSVTRHEAENILRN--SNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDS   81 (113)
Q Consensus         4 ~~~l~~~~w~~g~i~r~~ae~lL~~--~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~s   81 (113)
                      ...++.++||||.|+|++||++|..  .++|+||||.| +.+|.|+|||+.++.++||+|.+.. +|.|++.+ ...|+|
T Consensus       155 ~~~~~~~~wyhg~i~r~~ae~~L~~~~~~~G~FLvR~s-~~~~~~~lsv~~~~~v~h~~I~~~~-~g~~~~~~-~~~F~s  231 (613)
T 2ozo_A          155 TTAHERMPWYHSSLTREEAERKLYSGAQTDGKFLLRPR-KEQGTYALSLIYGKTVYHYLISQDK-AGKYCIPE-GTKFDT  231 (613)
T ss_dssp             TSCTTTSTTBCTTCCHHHHHHHHSSSCCCTTCEEEEEC-SSTTEEEEEEEETTEEEEEEEEECT-TCCEECTT-SCEESS
T ss_pred             ccccccCCccccCCCHHHHHHHHhhcCCCCceEEEEec-CCCCCEEEEEEECCeEEEEEEEECC-CCCEEECC-CCCcCC
Confidence            4578899999999999999999975  47999999999 6679999999999999999999865 68899885 478999


Q ss_pred             HHHHHHHHhhCCcccCCCcceEecCcccc
Q psy12508         82 VPEMIQHFAENRLPILGAEHMCLLHPMIE  110 (113)
Q Consensus        82 l~~lv~~y~~~~~~~~~~~~~~L~~pv~~  110 (113)
                      |.+||+||+.++..+.    +.|+.||+.
T Consensus       232 l~~Lv~~y~~~~~~l~----~~L~~pC~~  256 (613)
T 2ozo_A          232 LWQLVEYLKLKADGLI----YCLKEACPN  256 (613)
T ss_dssp             HHHHHHHHHHCCTTCS----SCCCSBCCC
T ss_pred             HHHHHHHHhhCCCCce----ecccccccc
Confidence            9999999999987543    367777654

>3ps5_A Tyrosine-protein phosphatase non-receptor type 6; SH2, PTP, hydrolase, signaling protein; 3.10A {Homo sapiens}

Probab=99.90  E-value=7.9e-24  Score=158.00  Aligned_cols=103  Identities=26%  Similarity=0.530  Sum_probs=90.4

Q ss_pred             CCCCCCCceeecCCHHHHHHHhcC-CCCceEEEEecCCCCCcEEEEEEeCC---------eeEEEEEEecCCCCcEEECc
Q psy12508          5 KPLDQRNWYHGSVTRHEAENILRN-SNEGSYLVRNSESNRPDYSLSLKSAR---------GFMHMKIQRDPDTGKFILGQ   74 (113)
Q Consensus         5 ~~l~~~~w~~g~i~r~~ae~lL~~-~~~G~FLvR~s~~~~~~~~Lsv~~~~---------~v~h~~I~~~~~~~~~~~~~   74 (113)
                      .+...++||||.|+|.+||++|.. +.+|+||||+|.+.+|.|+|||+..+         .++||+|...+  |.|.+.+
T Consensus       103 ~~p~~~~Wy~g~~~r~eAe~lL~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~~~~~~~~~~v~H~~I~~~~--~~~~~~~  180 (595)
T 3ps5_A          103 SDPTSERWYHGHMSGGQAETLLQAKGEPWTFLVRESLSQPGDFVLSVLSDQPKAGPGSPLRVTHIKVMCEG--GRYTVGG  180 (595)
T ss_dssp             CCSCCSTTEEESCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEEEEEEESSSTTSCEEEEEEEEBCGG--GCBBSSS
T ss_pred             ccccccccccccCCHHHHHHHHhccCCCceEEEEecCCCCCcEEEEEEECCccccccCCCceEEEEEEEeC--CEEEEcC
Confidence            455678999999999999999965 67899999999999999999999877         89999998754  7788876


Q ss_pred             CCCCCCCHHHHHHHHhhCCcccCCCcceEecCcccc
Q psy12508         75 FSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIE  110 (113)
Q Consensus        75 ~~~~F~sl~~lv~~y~~~~~~~~~~~~~~L~~pv~~  110 (113)
                       ...|+||.+||+||++++++..++..+.|+.|+..
T Consensus       181 -~~~F~sl~~LV~~y~~~~l~~~~g~~~~L~~p~~~  215 (595)
T 3ps5_A          181 -LETFDSLTDLVEHFKKTGIEEASGAFVYLRQPYYA  215 (595)
T ss_dssp             -SCCBSSHHHHHHHHHHSCBCCTTSCCBCCCEECCC
T ss_pred             -CcCCCCHHHHHHHHhcCCccccCCcEEEeeccccc
Confidence             47999999999999999998877777889988864

>2cr4_A 3BP-2, SH3 domain-binding protein 2; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.90  E-value=1.7e-24  Score=133.25  Aligned_cols=94  Identities=21%  Similarity=0.323  Sum_probs=76.8

Q ss_pred             CCCCCCCCceeecCCHHHHHHHhcC-C-CCceEEEEecCCCCCcEEEEEEeC--CeeEEEEEEecCCCCcEEECcCCCCC
Q psy12508          4 PKPLDQRNWYHGSVTRHEAENILRN-S-NEGSYLVRNSESNRPDYSLSLKSA--RGFMHMKIQRDPDTGKFILGQFSAPF   79 (113)
Q Consensus         4 ~~~l~~~~w~~g~i~r~~ae~lL~~-~-~~G~FLvR~s~~~~~~~~Lsv~~~--~~v~h~~I~~~~~~~~~~~~~~~~~F   79 (113)
                      .++++.++|||         .+|.. . .+|+||||+|+ .+|.|+|||+.+  ++|+||+|...+  +.|++.+ ...|
T Consensus        24 ~~~l~~~~Wyh---------~Ll~~g~~~dG~FLVR~S~-~~g~y~LSv~~~~~~~vkH~rI~~~~--~~~~i~~-~~~F   90 (126)
T 2cr4_A           24 TESCEVERLFK---------ATSPRGEPQDGLYCIRNSS-TKSGKVLVVWDETSNKVRNYRIFEKD--SKFYLEG-EVLF   90 (126)
T ss_dssp             CCHHHHHHHHH---------HHSTTSCCCTTCEEEEECS-STTCEEEEEEETTTTEECCEECEEET--TEEESSS-SCEE
T ss_pred             ccccccCCCHH---------HHhhCCCCCCCeEEEEecC-CCCCEEEEEEeCCCCCEEEEEEEECC--CeEEEcC-CccC
Confidence            34455679999         33333 2 35999999999 889999999999  899999999876  5788876 4789


Q ss_pred             CCHHHHHHHHhhCCcccCCCcceEecCcccccC
Q psy12508         80 DSVPEMIQHFAENRLPILGAEHMCLLHPMIEQL  112 (113)
Q Consensus        80 ~sl~~lv~~y~~~~~~~~~~~~~~L~~pv~~~~  112 (113)
                      +||.+||+||++++++..  ..+.|+.|+++++
T Consensus        91 ~sL~eLV~hY~~~~l~~~--~~~~L~~P~~~~~  121 (126)
T 2cr4_A           91 VSVGSMVEHYHTHVLPSH--QSLLLRHPYGYTS  121 (126)
T ss_dssp             SSHHHHHHHHTTSCCSSS--SSCCCCSBSSCCC
T ss_pred             CCHHHHHHHHhhCCcCCC--CCEEeCCcCCCCC
Confidence            999999999999999864  4678999998753

>2shp_A SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin signaling, SH2 protein; HET: CAT; 2.00A {Homo sapiens} SCOP: c.45.1.2 d.93.1.1 d.93.1.1

Probab=99.89  E-value=5e-23  Score=151.77  Aligned_cols=103  Identities=27%  Similarity=0.524  Sum_probs=90.5

Q ss_pred             CCCCCceeecCCHHHHHHHhcC-CCCceEEEEecCCCCCcEEEEEEeCC----------eeEEEEEEecCCCCcEEECcC
Q psy12508          7 LDQRNWYHGSVTRHEAENILRN-SNEGSYLVRNSESNRPDYSLSLKSAR----------GFMHMKIQRDPDTGKFILGQF   75 (113)
Q Consensus         7 l~~~~w~~g~i~r~~ae~lL~~-~~~G~FLvR~s~~~~~~~~Lsv~~~~----------~v~h~~I~~~~~~~~~~~~~~   75 (113)
                      .+.++||||.++|.+||++|++ .++|+||||.|++.+|.|+||++..+          .++|++|...+  |.|.+.+ 
T Consensus       107 p~~~~w~~g~~~r~~Ae~lL~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~~~~~~~~~~~v~H~~I~~~~--g~~~l~~-  183 (525)
T 2shp_A          107 PTSERWFHGHLSGKEAEKLLTEKGKHGSFLVRESQSHPGDFVLSVRTGDDKGESNDGKSKVTHVMIRCQE--LKYDVGG-  183 (525)
T ss_dssp             CTTCTTBCCSCCHHHHHHHHHHTCCTTEEEEEECSSSTTCEEEEEEECC-----CCCCCEEEEEEEEEET--TEEESSS-
T ss_pred             cccceeecccCCHHHHHHHHhccCCCceEEEEecCCCCCCEEEEEEECCccccccccccceEEEEEEecC--CeEEECC-
Confidence            4567999999999999999976 48999999999998999999999977          89999999875  8888886 


Q ss_pred             CCCCCCHHHHHHHHhhCCcccCCCcceEecCcccccC
Q psy12508         76 SAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQL  112 (113)
Q Consensus        76 ~~~F~sl~~lv~~y~~~~~~~~~~~~~~L~~pv~~~~  112 (113)
                      ...|+||.+||+||+.++++...+..+.|+.|+++..
T Consensus       184 ~~~F~sL~eLV~~y~~~~l~~~~g~~~~L~~P~~~t~  220 (525)
T 2shp_A          184 GERFDSLTDLVEHYKKNPMVETLGTVLQLKQPLNTTR  220 (525)
T ss_dssp             SCCBSSHHHHHHHHHHSCCBCTTSCBCCCCEECCCSC
T ss_pred             CceeCcHHHHHHhhhccCccccCCeEEEeeccccccc
Confidence            4799999999999999998776666788999988753

>2b3o_A Tyrosine-protein phosphatase, non-receptor type 6; protein tyrosine phosphatase, SHP-1, signaling, hydrolase; 2.80A {Homo sapiens} PDB: 1x6c_A 2rmx_A* 2yu7_A*

Probab=99.88  E-value=3.5e-23  Score=152.82  Aligned_cols=102  Identities=26%  Similarity=0.537  Sum_probs=88.5

Q ss_pred             CCCCceeecCCHHHHHHHhcC-CCCceEEEEecCCCCCcEEEEEEeCC---------eeEEEEEEecCCCCcEEECcCCC
Q psy12508          8 DQRNWYHGSVTRHEAENILRN-SNEGSYLVRNSESNRPDYSLSLKSAR---------GFMHMKIQRDPDTGKFILGQFSA   77 (113)
Q Consensus         8 ~~~~w~~g~i~r~~ae~lL~~-~~~G~FLvR~s~~~~~~~~Lsv~~~~---------~v~h~~I~~~~~~~~~~~~~~~~   77 (113)
                      +.++||||.|+|.+||.+|.. +++|+||||.|++.+|.|+||++..+         .++|++|....  |.|.++. ..
T Consensus       106 ~~~~w~~g~i~r~~Ae~lL~~~~~~G~FLVR~S~~~~g~y~Lsv~~~~~~~~~~~~~~v~h~~I~~~~--g~~~l~~-~~  182 (532)
T 2b3o_A          106 TSERWYHGHMSGGQAETLLQAKGEPWTFLVRESLSQPGDFVLSVLSDQPKAGPGSPLRVTHIKVMCEG--GRYTVGG-LE  182 (532)
T ss_dssp             GGCTTBCTTCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEEEEEEEC----CCEEEEEEEEBCCT--TSBBSSS-SC
T ss_pred             ccccccccccchHHHHHHHhcCCCCceEEEecCCCCCCceEEEEEecCccccccCCCceEEEEEEEcC--CceeeCC-Cc
Confidence            456999999999999999975 67899999999999999999999876         89999998864  7888875 47


Q ss_pred             CCCCHHHHHHHHhhCCcccCCCcceEecCcccccC
Q psy12508         78 PFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQL  112 (113)
Q Consensus        78 ~F~sl~~lv~~y~~~~~~~~~~~~~~L~~pv~~~~  112 (113)
                      .|++|.+||+||+.+++....+..+.|+.|+.+..
T Consensus       183 ~F~sl~eLV~~y~~~~l~~~~g~~~~L~~P~~~t~  217 (532)
T 2b3o_A          183 TFDSLTDLVEHFKKTGIEEASGAFVYLRQPYYATR  217 (532)
T ss_dssp             CBSSHHHHHHHHHHHCEECSSSCEECCCEECCCCC
T ss_pred             ccCcHHHHHhhccccCccccCCeeEeccccccccc
Confidence            99999999999999988766666788899987754

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=99.87  E-value=7.4e-23  Score=144.87  Aligned_cols=100  Identities=29%  Similarity=0.511  Sum_probs=69.6

Q ss_pred             CCCCCCCCceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCHH
Q psy12508          4 PKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSVP   83 (113)
Q Consensus         4 ~~~l~~~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl~   83 (113)
                      ..+++.++||||.|+|++||++|+  ++|+||||.|++.+ .|+|||+.++.++||+|...+  +.|.+.+  ..|+++.
T Consensus         7 ~~~l~~~~wyhg~i~r~~a~~lL~--~~G~flvR~s~~~~-~~~lsv~~~~~~~h~~i~~~~--~~~~~~~--~~F~sl~   79 (377)
T 3cbl_A            7 QKPLHEQLWYHGAIPRAEVAELLV--HSGDFLVRESQGKQ-EYVLSVLWDGLPRHFIIQSLD--NLYRLEG--EGFPSIP   79 (377)
T ss_dssp             GSCGGGCTTBCTTCCHHHHHHHCC--STTEEEEEECC--C-CEEEEC-----CCEEEC------CCCCC------CCSHH
T ss_pred             ccccccCCccCCCCCHHHHHHHHh--cCCCEEEEEeCCCC-cEEEEEEECCCccchhhcccc--ceEEecc--eeccchH
Confidence            357889999999999999999998  79999999999877 999999999999999998865  6777765  6899999


Q ss_pred             HHHHHHhhCCcccCCCcceEecCcccc
Q psy12508         84 EMIQHFAENRLPILGAEHMCLLHPMIE  110 (113)
Q Consensus        84 ~lv~~y~~~~~~~~~~~~~~L~~pv~~  110 (113)
                      +||+||+.++.++....++.+..|+++
T Consensus        80 ~LI~~y~~~~~~l~~~~~~~~~~~~~~  106 (377)
T 3cbl_A           80 LLIDHLLSTQQPLTKKSGVVLHRAVPK  106 (377)
T ss_dssp             HHHHHHHHHTCCC-----CCCCEECCC
T ss_pred             HHHHHHhhccCCcccccCcccccCccc
Confidence            999999988776654444455555543

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=99.86  E-value=2.7e-21  Score=141.35  Aligned_cols=89  Identities=31%  Similarity=0.595  Sum_probs=79.2

Q ss_pred             CCCCCCCceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCHHH
Q psy12508          5 KPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSVPE   84 (113)
Q Consensus         5 ~~l~~~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl~~   84 (113)
                      .+++.++||||.|+|.+|+.+|+...+|+||||.|++.+|.|+|||+..+.++||+|.... +|.+++.. ...|+++.+
T Consensus       100 ~~le~~~wyhg~i~r~~ae~ll~~~~~G~fLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~-~g~~~~~~-~~~F~sl~e  177 (495)
T 1opk_A          100 NSLEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTAS-DGKLYVSS-ESRFNTLAE  177 (495)
T ss_dssp             SSGGGSTTEEEECCHHHHHHHGGGCCTTEEEEEECSSSTTCEEEEEEETTEEEEEECEECT-TSCEESST-TSCBSSHHH
T ss_pred             ccccchhhhccCCCHHHHHHHhhCCCCceEEEEeCCCCCCceEEEEeeCCeEEEEEEEecC-CCceEecc-CccchhHHH
Confidence            4678899999999999999999877899999999999899999999999999999999865 57777766 478999999


Q ss_pred             HHHHHhhCCcc
Q psy12508         85 MIQHFAENRLP   95 (113)
Q Consensus        85 lv~~y~~~~~~   95 (113)
                      ||+||......
T Consensus       178 Lv~~~~~~~~g  188 (495)
T 1opk_A          178 LVHHHSTVADG  188 (495)
T ss_dssp             HHHHHTTCCTT
T ss_pred             Hhhhhcccccc
Confidence            99999876543

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.84  E-value=7.4e-21  Score=137.55  Aligned_cols=92  Identities=27%  Similarity=0.586  Sum_probs=78.8

Q ss_pred             CCCCCCCCceeecCCHHHHHHHhcC--CCCceEEEEecCCCCCcEEEEEEe-----CCeeEEEEEEecCCCCcEEECcCC
Q psy12508          4 PKPLDQRNWYHGSVTRHEAENILRN--SNEGSYLVRNSESNRPDYSLSLKS-----ARGFMHMKIQRDPDTGKFILGQFS   76 (113)
Q Consensus         4 ~~~l~~~~w~~g~i~r~~ae~lL~~--~~~G~FLvR~s~~~~~~~~Lsv~~-----~~~v~h~~I~~~~~~~~~~~~~~~   76 (113)
                      ..+++.++||||.|+|++||++|+.  .++|+||||.|+..+|.|+|||+.     ++.++||+|.+.. +|.|++.. .
T Consensus        59 ~~~le~~~w~~g~~~r~~ae~~L~~~~~~~G~FLvR~s~~~~g~y~lsv~~~~~~~~~~v~h~~I~~~~-~g~~~~~~-~  136 (452)
T 1fmk_A           59 SDSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLD-SGGFYITS-R  136 (452)
T ss_dssp             TTSGGGSTTEEETCCHHHHHHHHTCTTSCTTEEEEEECSSSTTCEEEEEEEEETTTEEEEEEEEEEECT-TSCEESST-T
T ss_pred             cccccccccccCCccHHHHHHHhccCCCCCceEEEEeCCCCCCceEEEEEeeccCCCCcEEEEEEEEcC-CCCEEEec-C
Confidence            3567788999999999999999976  367999999999889999999996     4579999999876 57788876 5


Q ss_pred             CCCCCHHHHHHHHhhCCcccC
Q psy12508         77 APFDSVPEMIQHFAENRLPIL   97 (113)
Q Consensus        77 ~~F~sl~~lv~~y~~~~~~~~   97 (113)
                      ..|+|+.+||+||+.+...+.
T Consensus       137 ~~F~Sl~~Li~~y~~~~~~l~  157 (452)
T 1fmk_A          137 TQFNSLQQLVAYYSKHADGLC  157 (452)
T ss_dssp             SEESSHHHHHHHHTTCCTTSS
T ss_pred             cccCCHHHHHHHhhhccccch
Confidence            789999999999988766543

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.84  E-value=1.9e-20  Score=135.32  Aligned_cols=89  Identities=25%  Similarity=0.522  Sum_probs=79.0

Q ss_pred             CCCCCCCceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCHHH
Q psy12508          5 KPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSVPE   84 (113)
Q Consensus         5 ~~l~~~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl~~   84 (113)
                      ..++.+|||||.|+|++||++|+..++|+||||.|++.+|.|+||++.++.++||+|....  +.|.+.. ...|.++.+
T Consensus        75 ~~~~~~~wyhg~i~r~~ae~~L~~~~~G~FlvR~S~~~~g~~~Lsv~~~~~v~H~~I~~~~--~~~~i~~-~~~F~sl~e  151 (450)
T 1k9a_A           75 TKLSLMPWFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSCEGKVEHYRIMYHA--SKLSIDE-EVYFENLMQ  151 (450)
T ss_dssp             TTEESCTTBCTTCCHHHHHHHTCSCCTTEEEEEECSSSTTSEEEEEECSSSEEEEEEEEET--TEEESSS-SSCBSSHHH
T ss_pred             cccccccccccCcCHHHhhhhhccCCCceEEEEecCCCCCceEEEEEeCCeeeEEEEEecC--CceEecc-ccccccHHH
Confidence            4567889999999999999999877789999999999899999999999999999997764  7788876 479999999


Q ss_pred             HHHHHhhCCccc
Q psy12508         85 MIQHFAENRLPI   96 (113)
Q Consensus        85 lv~~y~~~~~~~   96 (113)
                      ||+||......+
T Consensus       152 Lv~~y~~~~~~~  163 (450)
T 1k9a_A          152 LVEHYTTDADGL  163 (450)
T ss_dssp             HHHHHHHCCTTS
T ss_pred             HHhhhcccccch
Confidence            999999876544

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A

Probab=99.84  E-value=1.9e-20  Score=136.40  Aligned_cols=82  Identities=28%  Similarity=0.568  Sum_probs=73.3

Q ss_pred             CCCCCCCce-----eecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCC
Q psy12508          5 KPLDQRNWY-----HGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPF   79 (113)
Q Consensus         5 ~~l~~~~w~-----~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F   79 (113)
                      .+++.+|||     ||.|+|++||++|.. ++|+||||+|++.+|.|+||++.++.++||+|.. +  |.|++++  ..|
T Consensus        41 ~~~~~~~wy~~~w~hg~i~r~~ae~lL~~-~~G~FLvR~S~~~~g~~~Lsv~~~~~v~H~~I~~-~--g~~~~~~--~~F  114 (463)
T 3cxl_A           41 CEVENRPKYYGREFHGMISREAADQLLIV-AEGSYLIRESQRQPGTYTLALRFGSQTRNFRLYY-D--GKHFVGE--KRF  114 (463)
T ss_dssp             CCCTTCCTTCCTTBCCSCCHHHHHHHHTT-STTEEEEEECSSSTTCEEEEEECSSSEEEEECEE-S--SSEESSS--CCB
T ss_pred             ccccCCCCccccccccCCCHHHHHHHHcC-CCCeEEEeccCCCCCCEEEEEEECCEEEEEEEec-C--CeEEECC--Ccc
Confidence            467788888     999999999999964 6899999999999999999999999999999987 4  7788875  799


Q ss_pred             CCHHHHHH-----HHhhC
Q psy12508         80 DSVPEMIQ-----HFAEN   92 (113)
Q Consensus        80 ~sl~~lv~-----~y~~~   92 (113)
                      +||.|||+     +|+..
T Consensus       115 ~sl~~Lv~dGl~~~~~~~  132 (463)
T 3cxl_A          115 ESIHDLVTDGLITLYIET  132 (463)
T ss_dssp             SCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhhhccC
Confidence            99999999     98754

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.82  E-value=3.1e-20  Score=136.87  Aligned_cols=91  Identities=27%  Similarity=0.591  Sum_probs=76.8

Q ss_pred             CCCCCCCceeecCCHHHHHHHhcC--CCCceEEEEecCCCCCcEEEEEEe-----CCeeEEEEEEecCCCCcEEECcCCC
Q psy12508          5 KPLDQRNWYHGSVTRHEAENILRN--SNEGSYLVRNSESNRPDYSLSLKS-----ARGFMHMKIQRDPDTGKFILGQFSA   77 (113)
Q Consensus         5 ~~l~~~~w~~g~i~r~~ae~lL~~--~~~G~FLvR~s~~~~~~~~Lsv~~-----~~~v~h~~I~~~~~~~~~~~~~~~~   77 (113)
                      ++++.++||||.|+|++||++|+.  .++|+||||.|+..+|.|+|||+.     ++.++||+|...+ +|.|++.. ..
T Consensus       143 ~~l~~~~wy~g~i~r~~ae~~L~~~~~~~G~FLvR~S~~~~g~y~lsv~~~~~~~~~~v~h~~I~~~~-~g~~~i~~-~~  220 (535)
T 2h8h_A          143 DSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLD-SGGFYITS-RT  220 (535)
T ss_dssp             TSGGGSTTBCCSCCHHHHHHHHTCTTCCTTEEEEEECSSSTTCEEEEEEEEETTTEEEEEEEEEBC-C-CSCEEEET-TE
T ss_pred             ccccccceeccccCHHHHHHHhccCCCCCCeEEEEecCCCCCcEEEEEEeeccCCCCceEEEEEEEcC-CCcEEeec-cc
Confidence            466788999999999999999976  367999999999889999999996     4579999999865 57777765 47


Q ss_pred             CCCCHHHHHHHHhhCCcccC
Q psy12508         78 PFDSVPEMIQHFAENRLPIL   97 (113)
Q Consensus        78 ~F~sl~~lv~~y~~~~~~~~   97 (113)
                      .|.||.+||+||+.+...+.
T Consensus       221 ~F~SL~eLv~~y~~~~~~~~  240 (535)
T 2h8h_A          221 QFNSLQQLVAYYSKHADGLC  240 (535)
T ss_dssp             EESSHHHHHHHHHHCCTTSS
T ss_pred             cccChHHhheeeccccCccc
Confidence            89999999999998766543

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A

Probab=99.82  E-value=1.1e-19  Score=120.62  Aligned_cols=87  Identities=31%  Similarity=0.615  Sum_probs=78.0

Q ss_pred             CCCCCceeecCCHHHHHHHhc-CCCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCHHHH
Q psy12508          7 LDQRNWYHGSVTRHEAENILR-NSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSVPEM   85 (113)
Q Consensus         7 l~~~~w~~g~i~r~~ae~lL~-~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl~~l   85 (113)
                      +...+||||.|+|.+|+.+|. ..++|+||||.|.+.+|.|+||++..+.++|++|.+.. .|.|.+..  ..|+|+.+|
T Consensus        55 ~~~~~w~~g~isr~~ae~lL~~~~~~G~fLvR~S~~~~g~~~LSv~~~~~v~h~~I~~~~-~g~~~~~~--~~f~sl~eL  131 (217)
T 1gri_A           55 MKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDG-AGKYFLWV--VKFNSLNEL  131 (217)
T ss_dssp             CCCCSSBCTTCCHHHHHHHHHTCSSTTCEEEEECSSSTTCEEEEEEETTEEEEEEEEECS-SSCEESSS--CEESSHHHH
T ss_pred             cccchhhcccCCHHHHHHHHhccCCCceEEEEccCCCCCCEEEEEEECCEEEEEEEEEcC-CCCEEEee--eEcCCHHHH
Confidence            456799999999999999994 46899999999999999999999999999999999876 68888874  799999999


Q ss_pred             HHHHhhCCccc
Q psy12508         86 IQHFAENRLPI   96 (113)
Q Consensus        86 v~~y~~~~~~~   96 (113)
                      |+||+.+++..
T Consensus       132 v~~~~~~~~~~  142 (217)
T 1gri_A          132 VDYHRSTSVSR  142 (217)
T ss_dssp             HHHHHHSCSSS
T ss_pred             HHhhhcccccc
Confidence            99999987643

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=99.81  E-value=1.1e-19  Score=131.42  Aligned_cols=90  Identities=26%  Similarity=0.569  Sum_probs=77.9

Q ss_pred             CCCCCCCceeecCCHHHHHHHhcC--CCCceEEEEecCCCCCcEEEEEEe-----CCeeEEEEEEecCCCCcEEECcCCC
Q psy12508          5 KPLDQRNWYHGSVTRHEAENILRN--SNEGSYLVRNSESNRPDYSLSLKS-----ARGFMHMKIQRDPDTGKFILGQFSA   77 (113)
Q Consensus         5 ~~l~~~~w~~g~i~r~~ae~lL~~--~~~G~FLvR~s~~~~~~~~Lsv~~-----~~~v~h~~I~~~~~~~~~~~~~~~~   77 (113)
                      .+++.++||||.|+|++||++|..  ..+|+||||.|+..+|.|+|||+.     ++.++||+|...+ +|.|.+.. ..
T Consensus        65 ~~le~~~W~~g~i~r~~ae~~L~~~~~~~G~FLvR~s~~~~g~y~lsv~~~~~~~~~~v~H~~I~~~~-~g~~~i~~-~~  142 (454)
T 1qcf_A           65 DSLETEEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKIRTLD-NGGFYISP-RS  142 (454)
T ss_dssp             TCGGGSTTEETTCCHHHHHHHHHSTTCCTTCEEEEECSSSTTSEEEEEEEEETTTEEEEEEEEEEECT-TSCEESSS-SS
T ss_pred             cccccccccccccchhhhhhhhhcCCCCCceEEEEECcCCCCeEEEEEEecccCCCCceEEEEEEEcC-CCcEEEeC-cc
Confidence            467789999999999999998864  588999999999889999999997     5679999999865 57787776 46


Q ss_pred             CCCCHHHHHHHHhhCCccc
Q psy12508         78 PFDSVPEMIQHFAENRLPI   96 (113)
Q Consensus        78 ~F~sl~~lv~~y~~~~~~~   96 (113)
                      .|.++.+|++||.+....+
T Consensus       143 ~F~sl~eLv~~y~~~~~~l  161 (454)
T 1qcf_A          143 TFSTLQELVDHYKKGNDGL  161 (454)
T ss_dssp             CBSSHHHHHHHHTSSCTTS
T ss_pred             ccCCHHHHHHHHHhccCCc
Confidence            9999999999999876544

>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A

Probab=99.81  E-value=1.9e-21  Score=137.90  Aligned_cols=78  Identities=31%  Similarity=0.484  Sum_probs=0.0

Q ss_pred             CCCCCCCceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCHHH
Q psy12508          5 KPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSVPE   84 (113)
Q Consensus         5 ~~l~~~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl~~   84 (113)
                      ..++.+|||||.|+|.+||.+|...++|+||||.| +.+|.|+|||+.++.|+||+|...+ +|.|++.. ...|+||.+
T Consensus       296 ~~~~~~~WyhG~isR~~AE~LL~~~~~G~FLVR~S-s~~g~y~LSv~~~~~v~H~~I~~~~-~g~~~~~~-~~~F~SL~e  372 (373)
T 3hhm_B          296 PHHDEKTWNVGSSNRNKAENLLRGKRDGTFLVRES-SKQGCYACSVVVDGEVKHCVINKTA-TGYGFAEP-YNLYSSLKE  372 (373)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccCCCCcCCCCCHHHHHHHhccCCCCcEEEEec-CCCCCEEEEEEECCeEEEEEEEEcC-CCcEEeCC-CCCCCChhh
Confidence            35677899999999999999998778999999999 7789999999999999999999876 56677665 479999988


Q ss_pred             H
Q psy12508         85 M   85 (113)
Q Consensus        85 l   85 (113)
                      |
T Consensus       373 L  373 (373)
T 3hhm_B          373 L  373 (373)
T ss_dssp             -
T ss_pred             C
Confidence            6

>2xp1_A SPT6; transcription, IWS1, histone chaperone, mRNA export; 2.20A {Antonospora locustae}

Probab=99.57  E-value=1.3e-14  Score=93.63  Aligned_cols=76  Identities=24%  Similarity=0.451  Sum_probs=66.1

Q ss_pred             CCCceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEe-CCeeEEEEEEecCCCCcEEECcCCCCCCCHHHHHH
Q psy12508          9 QRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKS-ARGFMHMKIQRDPDTGKFILGQFSAPFDSVPEMIQ   87 (113)
Q Consensus         9 ~~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~-~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl~~lv~   87 (113)
                      .+|+|+ +++..+||++|.+. +|+||||+|.. ++.++||++. ++.++|+.|.-.+  ..|.+++  ..|.+|.|||.
T Consensus        13 ~HP~F~-n~s~~qAe~~L~~~-~G~~liRPSsk-~~~ltit~Kv~d~~~~Hi~I~E~~--k~l~ig~--~~fedLDElI~   85 (178)
T 2xp1_A           13 KHPLFK-NFNVTESENYLRSS-TDDFLIRKGSR-HGYCVLVIKFASDVFVHMKIEEHS--EHYTCSN--KHFEDIDEVIS   85 (178)
T ss_dssp             GSTTEE-CCCHHHHHHHHHHS-SCCEEEEECSS-TTEEEEEEEEETTEEEEEEEEECS--SCEEETT--EEESSHHHHHH
T ss_pred             cCCCcC-CCCHHHHHHHHhcC-CCCEEEeecCC-CCcEEEEEEECCCcEEEEEEEECC--CEEEECC--cEECCHHHHHH
Confidence            579999 89999999999874 59999999997 6789999995 7789999998654  4677776  58999999999


Q ss_pred             HHhh
Q psy12508         88 HFAE   91 (113)
Q Consensus        88 ~y~~   91 (113)
                      +|.+
T Consensus        86 ~yv~   89 (178)
T 2xp1_A           86 VYVR   89 (178)
T ss_dssp             HTHH
T ss_pred             HHHH
Confidence            9976

>1uur_A Stata protein, STAT protein; transcription activator, SH2, signal transduction, transducer, transcription factor; HET: PTR; 2.7A {Dictyostelium discoideum} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 1uus_A*

Probab=98.93  E-value=1.7e-09  Score=78.34  Aligned_cols=72  Identities=21%  Similarity=0.403  Sum_probs=58.8

Q ss_pred             CCCceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEeC---CeeEEEEEEecCCCCcEEECcCCCCCCCHHHH
Q psy12508          9 QRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSA---RGFMHMKIQRDPDTGKFILGQFSAPFDSVPEM   85 (113)
Q Consensus         9 ~~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~---~~v~h~~I~~~~~~~~~~~~~~~~~F~sl~~l   85 (113)
                      ...|++|.|+|++|+++|.+.++|+||||-|++.+|.|+++.+..   +.++|+.|....  ..       ..-.+++|+
T Consensus       350 ~dg~I~GFIsk~ea~~lL~~~~~GTFLLRFSeS~~GgitIsyV~~d~~~~~kh~~v~p~t--~~-------ls~~SL~D~  420 (473)
T 1uur_A          350 QEGIIYGYMGRQEVNDALQNQDPGTFIIRFSERNPGQFGIAYIGVEMPARIKHYLVQPND--TA-------AAKKTFPDF  420 (473)
T ss_dssp             HHTSSCBSCCHHHHHHTTSSCCTTCEEEEECSSSTTCEEEEEECSSSSCCEEEEECCGGG--SB-------TTTBCHHHH
T ss_pred             hcCcEEEEecHHHHHHHhhCCCCCeEEEEeccCCCceEEEEEEeecCCCceeEEEecCCc--cc-------cccCCHHHH
Confidence            347999999999999999999999999999999999999999974   578899886432  11       133678888


Q ss_pred             HHHH
Q psy12508         86 IQHF   89 (113)
Q Consensus        86 v~~y   89 (113)
                      |.-|
T Consensus       421 I~d~  424 (473)
T 1uur_A          421 LSEH  424 (473)
T ss_dssp             HTTC
T ss_pred             Hhcc
Confidence            8765

>2xp1_A SPT6; transcription, IWS1, histone chaperone, mRNA export; 2.20A {Antonospora locustae}

Probab=98.72  E-value=3.9e-08  Score=63.32  Aligned_cols=76  Identities=11%  Similarity=0.168  Sum_probs=58.5

Q ss_pred             CCCCceeecCCHHHHHHHhcCCCCc--eEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCHHHH
Q psy12508          8 DQRNWYHGSVTRHEAENILRNSNEG--SYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSVPEM   85 (113)
Q Consensus         8 ~~~~w~~g~i~r~~ae~lL~~~~~G--~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl~~l   85 (113)
                      ..++||++  +++++|++|....++  .|.++.+...||.|+|++. .+.++|-.|...+  | |...  +..|+||.+|
T Consensus        99 ~~h~kf~~--s~~~~e~~L~~~~p~~~~Y~f~~s~~~PG~f~l~~~-~~~~~~e~i~V~~--g-~~~~--~~~f~sl~~L  170 (178)
T 2xp1_A           99 KAHAKYFN--SPEDAEKLLSSFDGSKVVYAFYFSRKYPGKLTFAYN-NGSILEEYIGVSD--M-LTYN--NSTFKDIDSF  170 (178)
T ss_dssp             HHSTTBCS--CTTTSHHHHHTCCSSSCEEEEEECSSSTTEEEEEEE-SSSEEEEEEEESS--S-EEET--TEEESSHHHH
T ss_pred             HhCCccCC--CHHHHHHHHHHhCCCCceEEEEecCCCCCeEEEEEc-CCCCceeeEEEcc--C-CEEc--CcCCcCHHHH
Confidence            35799998  899999999754333  3999999999999999997 5566665555544  4 4444  3899999999


Q ss_pred             HHHHhh
Q psy12508         86 IQHFAE   91 (113)
Q Consensus        86 v~~y~~   91 (113)
                      |+||++
T Consensus       171 ~~~fK~  176 (178)
T 2xp1_A          171 VAYRKR  176 (178)
T ss_dssp             HHHHHC
T ss_pred             HHHHhh
Confidence            999975

>1y1u_A Signal transducer and activator of transcription; STAT, DNA-binding, SH2 domain, transcription REGU signaling protein; 3.21A {Mus musculus}

Probab=98.31  E-value=7.3e-07  Score=66.39  Aligned_cols=43  Identities=26%  Similarity=0.400  Sum_probs=39.5

Q ss_pred             CceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEeC
Q psy12508         11 NWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSA   53 (113)
Q Consensus        11 ~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~   53 (113)
                      -|.+|.|+|.+|+++|...++|+||||-|++..|.|+++....
T Consensus       465 G~I~Gfisk~~a~~~L~~~~~GtFLlRFSds~~G~~tisyv~~  507 (585)
T 1y1u_A          465 GAILGFVNKQQAHDLLINKPDGTFLLRFSDSEIGGITIAWKFD  507 (585)
T ss_dssp             TCCCBSCCHHHHHHHHHTSCTTCEEEEEETTSTTEEEEEECCS
T ss_pred             cceEEeccHHHHHHHHhCCCCCceEEEeccCCcCcEEEEEEec
Confidence            4668999999999999999999999999999999999999874

>1yvl_A Signal transducer and activator of transcription 1-alpha/beta; signaling protein; HET: PTR; 3.00A {Homo sapiens}

Probab=98.22  E-value=2.1e-06  Score=64.86  Aligned_cols=72  Identities=14%  Similarity=0.312  Sum_probs=52.9

Q ss_pred             CceeecCCHHHHHHHhcCCCCceEEEEecCC-CCCcEEEEEEeC---C-eeEEEEEEecCCCCcEEECcCCCCCCCHHHH
Q psy12508         11 NWYHGSVTRHEAENILRNSNEGSYLVRNSES-NRPDYSLSLKSA---R-GFMHMKIQRDPDTGKFILGQFSAPFDSVPEM   85 (113)
Q Consensus        11 ~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~-~~~~~~Lsv~~~---~-~v~h~~I~~~~~~~~~~~~~~~~~F~sl~~l   85 (113)
                      -|..|.|+|.+|+.+|++.++|+||+|-|++ ..|.++++....   + .+.++.|.      -|....  -.--|++|.
T Consensus       576 G~I~GFIsK~~a~~lL~~~~~GTFLLRFSdS~~~Ggitia~V~~~~~~~~~~v~~v~------P~t~kd--l~~~sl~d~  647 (683)
T 1yvl_A          576 GCIMGFISKERERALLKDQQPGTFLLRFSESSREGAITFTWVERSQNGGEPDFHAVE------PYTKKE--LSAVTFPDI  647 (683)
T ss_dssp             TCCCBCCCHHHHHHHHSSSCSSCEEEEECSSCSSCEEEEEEEECCC---CCEEEEBC------CEEHHH--HTTSCHHHH
T ss_pred             CceEEeecHHHHHHHHhCCCCCeEEEecCCCCCCCceEEEEEeccCCCccceEEecC------CCchHh--hhhCCHHHH
Confidence            4668899999999999999999999999999 999999998863   2 33333332      122211  133578999


Q ss_pred             HHHHh
Q psy12508         86 IQHFA   90 (113)
Q Consensus        86 v~~y~   90 (113)
                      |..|.
T Consensus       648 i~d~~  652 (683)
T 1yvl_A          648 IRNYK  652 (683)
T ss_dssp             HHHCC
T ss_pred             hhchh
Confidence            98884

>1bf5_A Signal transducer and activator of transcription 1-alpha/beta; complex (SH2 domain/DNA), SH2 domain, transcription factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP: a.47.1.1 b.2.5.5 d.93.1.1

Probab=98.01  E-value=4.6e-06  Score=61.89  Aligned_cols=43  Identities=19%  Similarity=0.392  Sum_probs=38.5

Q ss_pred             CceeecCCHHHHHHHhcCCCCceEEEEecCC-CCCcEEEEEEeC
Q psy12508         11 NWYHGSVTRHEAENILRNSNEGSYLVRNSES-NRPDYSLSLKSA   53 (113)
Q Consensus        11 ~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~-~~~~~~Lsv~~~   53 (113)
                      -|..|.|++.+|+.+|++.++|+||+|-|++ ..|.++++....
T Consensus       441 G~I~GFIsK~~a~~lL~~~~~GTFLLRFSdS~~~GgITia~V~~  484 (575)
T 1bf5_A          441 GCIMGFISKERERALLKDQQPGTFLLRFSESSREGAITFTWVER  484 (575)
T ss_dssp             TCCCCCCCHHHHHHHTTTCCSCCCCEEECSSCSSCCEEEEECCC
T ss_pred             CceEEeecHHHHHHHHhCCCCCeEEEecCCCCCCCcEEEEEEec
Confidence            4667888999999999999999999999999 899999988763

>3bux_B E3 ubiquitin-protein ligase CBL; TKB, signal transduction, proto-oncogene, complex, ATP-binding, glycoprotein, kinase, membrane, nucleotide-binding; HET: PTR; 1.35A {Homo sapiens} SCOP: a.39.1.7 a.48.1.1 d.93.1.1 PDB: 1yvh_A* 3bun_B* 3buo_B* 3bum_B* 3buw_B* 3ob1_B* 3ob2_B* 3plf_B* 2cbl_A* 1b47_A 3pfv_A*

Probab=97.89  E-value=3.8e-05  Score=53.00  Aligned_cols=47  Identities=23%  Similarity=0.339  Sum_probs=42.2

Q ss_pred             CCCceeecCCHHHHHHHhcC--CCCceEEEEecCCCCCcEEEEEEeCCe
Q psy12508          9 QRNWYHGSVTRHEAENILRN--SNEGSYLVRNSESNRPDYSLSLKSARG   55 (113)
Q Consensus         9 ~~~w~~g~i~r~~ae~lL~~--~~~G~FLvR~s~~~~~~~~Lsv~~~~~   55 (113)
                      ..|=|.+.+|-+||.+.|..  ..+|+|++|-|.+.+|+|+|++...++
T Consensus       242 ~hpGy~aFlTydEv~~~L~~~~~kpGsYIfR~ScTrlGqwAIgyV~~~~  290 (329)
T 3bux_B          242 THPGYMAFLTYDEVKARLQKFIHKPGSYIFRLSCTRLGQWAIGYVTADG  290 (329)
T ss_dssp             SCTTBCTTCCHHHHHHHHGGGTTSTTEEEEEECSSSTTSEEEEEECTTS
T ss_pred             cCcchhheeeHHHHHHHHHHhcCCCCcEEEEeccCccCceEEEEECCCC
Confidence            45779999999999999987  789999999999999999999997644

>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}

Probab=97.88  E-value=1.8e-06  Score=69.06  Aligned_cols=80  Identities=19%  Similarity=0.426  Sum_probs=0.0

Q ss_pred             CCCceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEeC-CeeEEEEEEecCCCC------cEEECcCCCCCCC
Q psy12508          9 QRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSA-RGFMHMKIQRDPDTG------KFILGQFSAPFDS   81 (113)
Q Consensus         9 ~~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~-~~v~h~~I~~~~~~~------~~~~~~~~~~F~s   81 (113)
                      .+|.|| +++-.+|++.|.+.+.|.++||+|+..+...+++++.. +..+|+-|.-.+..+      .+.+++  ..|.+
T Consensus      1023 ~HP~F~-n~~~~qAe~~L~~~~~Gd~vIRPSSkG~dhLtvTwKv~d~vyqHidV~E~~K~n~~slG~~L~I~~--~~y~D 1099 (1219)
T 3psi_A         1023 NHPYYF-PFNGRQAEDYLRSKERGEFVIRQSSRGDDHLVITWKLDKDLFQHIDIQELEKENPLALGKVLIVDN--QKYND 1099 (1219)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCCCCC-CCCHHHHHHHHhcCCCCCEEEeecCCCCCceEEEEEEcCCcEEEEEEEecCCccccccCceEEECC--ceECC
Confidence            568888 89999999999988899999999988777788888865 557888887432122      345544  69999


Q ss_pred             HHHHHHHHhh
Q psy12508         82 VPEMIQHFAE   91 (113)
Q Consensus        82 l~~lv~~y~~   91 (113)
                      |.|||.-|.+
T Consensus      1100 LDEli~r~V~ 1109 (1219)
T 3psi_A         1100 LDQIIVEYLQ 1109 (1219)
T ss_dssp             ----------
T ss_pred             HHHHHHHHHH
Confidence            9999987744

>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex, cytokine activation, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA PTR; 2.25A {Mus musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A

Probab=97.85  E-value=2.1e-06  Score=63.91  Aligned_cols=71  Identities=18%  Similarity=0.280  Sum_probs=51.8

Q ss_pred             CceeecCCHHHHHHHhcCCCCceEEEEecCC-CCCcEEEEEEeC---CeeEEEEEEecCCCCcEEECcCCCCCCCHHHHH
Q psy12508         11 NWYHGSVTRHEAENILRNSNEGSYLVRNSES-NRPDYSLSLKSA---RGFMHMKIQRDPDTGKFILGQFSAPFDSVPEMI   86 (113)
Q Consensus        11 ~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~-~~~~~~Lsv~~~---~~v~h~~I~~~~~~~~~~~~~~~~~F~sl~~lv   86 (113)
                      -|.+|.|+|.+|+++|.+.++|+||+|-|++ ..|.++++.+..   +.+.|+.|..      |....  -.-.|++|+|
T Consensus       457 G~I~Gfisk~~a~~lL~~~~~GTFLlRFSes~~~Ggitis~v~~~~~g~~~~~~v~P------~t~~~--l~~~sLad~I  528 (596)
T 1bg1_A          457 GYIMGFISKERERAILSTKPPGTFLLRFSESSKEGGVTFTWVEKDISGSTQIQSVEP------YTKQQ--LNNMSFAEII  528 (596)
T ss_dssp             SCCCBCCCTTGGGTTTTTSCTTCBCEEECSSCSSCCEEECCCCSSSCSSCCCCCCCC------BCGGG--GTSSCHHHHT
T ss_pred             CCeEEEecHHHHHHHHhCCCCCeeEEeecCCCCCCcEEEEEEecCCCCceeEEecCC------Cchhh--hccCCHHHHH
Confidence            5668899999999999999999999999999 899999998764   2344444422      11111  2334788998


Q ss_pred             HHH
Q psy12508         87 QHF   89 (113)
Q Consensus        87 ~~y   89 (113)
                      ..|
T Consensus       529 ~d~  531 (596)
T 1bg1_A          529 MGY  531 (596)
T ss_dssp             TSC
T ss_pred             Hhh
Confidence            665

>3op0_A Signal transduction protein CBL-C; structural genomics, structural genomics consortium, SGC, SI transduction protein, SH3-binding protein; HET: PTR; 2.52A {Homo sapiens}

Probab=97.81  E-value=5.1e-05  Score=52.13  Aligned_cols=47  Identities=23%  Similarity=0.368  Sum_probs=42.3

Q ss_pred             CCCceeecCCHHHHHHHhc--CCCCceEEEEecCCCCCcEEEEEEeCCe
Q psy12508          9 QRNWYHGSVTRHEAENILR--NSNEGSYLVRNSESNRPDYSLSLKSARG   55 (113)
Q Consensus         9 ~~~w~~g~i~r~~ae~lL~--~~~~G~FLvR~s~~~~~~~~Lsv~~~~~   55 (113)
                      .+|=|.|.+|=+||.+.|.  ...+|+||+|.|.+.+|+|+|+....++
T Consensus       227 ~hpGy~aFlTydEV~~~L~~~~~KpGsYIfR~ScTrlGqwAIgYV~s~g  275 (323)
T 3op0_A          227 NHPGYMAFLTYDEVQERLQACRDKPGSYIFRPSCTRLGQWAIGYVSSDG  275 (323)
T ss_dssp             TCTTBCTTCCHHHHHHHTTGGGGSTTEEEEEECSSSTTCEEEEEECTTS
T ss_pred             cCcceeeeeeHHHHHHHHHHhccCCCcEEEEeccCccCceEEEEEcCCC
Confidence            5688999999999999998  4689999999999999999999997543

>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}

Probab=92.37  E-value=0.024  Score=45.86  Aligned_cols=85  Identities=14%  Similarity=0.218  Sum_probs=0.0

Q ss_pred             CCCCCCCceeecCCHHHHHHHhcC----CCC-ceEEEEecCCCCCcEEEEEEeC--CeeEEEEEEecCCCCcEEECcCCC
Q psy12508          5 KPLDQRNWYHGSVTRHEAENILRN----SNE-GSYLVRNSESNRPDYSLSLKSA--RGFMHMKIQRDPDTGKFILGQFSA   77 (113)
Q Consensus         5 ~~l~~~~w~~g~i~r~~ae~lL~~----~~~-G~FLvR~s~~~~~~~~Lsv~~~--~~v~h~~I~~~~~~~~~~~~~~~~   77 (113)
                      ..+..++.|. .-+++++++.|+.    +|. =.|.+..+...||.|.|++..+  ..++|-.|...+ +| |.+.+  .
T Consensus      1116 ~e~~~h~kf~-~g~~~eve~~L~~~k~~nP~ri~Y~f~~~~~~PG~F~L~f~~~~~~~~~~~~v~v~p-~G-f~~r~--~ 1190 (1219)
T 3psi_A         1116 NEMTSSEKFK-SGTKKDVVKFIEDYSRVNPNKSVYYFSLNHDNPGWFYLMFKINANSKLYTWNVKLTN-TG-YFLVN--Y 1190 (1219)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHhChhhc-CCCHHHHHHHHHHHHHhCCCcceEEEEeCCCCCCEEEEEEecCCCCCceeeeEEEcc-Ce-EEEcC--c
Confidence            4566777887 3578999998864    122 3456666777899999999864  347776666555 34 55544  7


Q ss_pred             CCCCHHHHHHHHhhCCc
Q psy12508         78 PFDSVPEMIQHFAENRL   94 (113)
Q Consensus        78 ~F~sl~~lv~~y~~~~~   94 (113)
                      .|+++.+|+.+++.+-.
T Consensus      1191 ~f~~~~~L~~~FK~~~~ 1207 (1219)
T 3psi_A         1191 NYPSVIQLCNGFKTLLK 1207 (1219)
T ss_dssp             -----------------
T ss_pred             cCcCHHHHHHHHHHHhc
Confidence            99999999999987643

>2di8_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=91.45  E-value=0.25  Score=28.86  Aligned_cols=29  Identities=21%  Similarity=0.145  Sum_probs=25.1

Q ss_pred             cCCCCceEEEEecCCCCCcEEEEEEeCCe
Q psy12508         27 RNSNEGSYLVRNSESNRPDYSLSLKSARG   55 (113)
Q Consensus        27 ~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~   55 (113)
                      .+..+|+|.|+-....+|.|.|+|+.++.
T Consensus        59 ~d~~dGty~v~Y~p~~~G~y~I~V~~~g~   87 (111)
T 2di8_A           59 EDLEDGTCKVSYFPTVPGVYIVSTKFADE   87 (111)
T ss_dssp             CBCTTSCEEEEECCCSCSEEEEEEEESSC
T ss_pred             EECCCCEEEEEEEeCCCeEEEEEEEECCE
Confidence            34688999999999989999999998764

>3rgh_A Filamin-A; cell adhesion, cytoskeleton-complex, disease mutation, immun like, cytoskeleton, actin-binding, cell junction, shape; HET: CME; 2.44A {Homo sapiens} SCOP: b.1.18.0

Probab=91.41  E-value=0.2  Score=28.68  Aligned_cols=29  Identities=10%  Similarity=0.219  Sum_probs=24.0

Q ss_pred             cCCCCceEEEEecCCCCCcEEEEEEeCCe
Q psy12508         27 RNSNEGSYLVRNSESNRPDYSLSLKSARG   55 (113)
Q Consensus        27 ~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~   55 (113)
                      .+..+|+|.|+-....+|.|.|+|+.+++
T Consensus        58 ~d~~dGty~V~Y~p~~~G~y~i~V~~~g~   86 (100)
T 3rgh_A           58 QDHGDGTHTITYIPLCPGAYTVTIKYGGQ   86 (100)
T ss_dssp             EECSSSEEEEEEECCSSEEEEEEEEETTE
T ss_pred             EeCCCCEEEEEEEeCCCeeEEEEEEECCE
Confidence            34678999999998888999999998763

>2bp3_A Filamin A; structural protein, cytoskeleton/complex, actin binding protein, cytoskeleton, complex; 2.32A {Homo sapiens} SCOP: b.1.18.10 PDB: 2aav_A

Probab=91.17  E-value=0.22  Score=28.23  Aligned_cols=29  Identities=21%  Similarity=0.256  Sum_probs=24.9

Q ss_pred             cCCCCceEEEEecCCCCCcEEEEEEeCCe
Q psy12508         27 RNSNEGSYLVRNSESNRPDYSLSLKSARG   55 (113)
Q Consensus        27 ~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~   55 (113)
                      .+..+|+|.|+-....+|.|.|+|+.+++
T Consensus        54 ~d~~dGty~v~Y~p~~~G~y~i~V~~~g~   82 (97)
T 2bp3_A           54 TDNQDGTCSVSYLPVLPGDYSILVKYNEQ   82 (97)
T ss_dssp             EECSSSEEEEEEECSSCEEEEEEEEETTE
T ss_pred             EECCCCEEEEEEEeCCCCcEEEEEEECCE
Confidence            35688999999999889999999998763

>2eea_A Filamin-B; beta-sandwich, immunoglobulin-like fold, interaction with GP1BA, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=91.04  E-value=0.4  Score=28.03  Aligned_cols=29  Identities=21%  Similarity=0.260  Sum_probs=25.1

Q ss_pred             cCCCCceEEEEecCCCCCcEEEEEEeCCe
Q psy12508         27 RNSNEGSYLVRNSESNRPDYSLSLKSARG   55 (113)
Q Consensus        27 ~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~   55 (113)
                      .+..+|+|.|+-....+|.|.|+|+.++.
T Consensus        69 ~d~~dGty~v~Y~p~~~G~y~I~V~~~g~   97 (115)
T 2eea_A           69 IDNKDGTCTVTYLPTLPGDYSILVKYNDK   97 (115)
T ss_dssp             BCCSSSEEEEEEECSSCSCEEEEEEESSS
T ss_pred             EECCCCEEEEEEEeCCCeeEEEEEEECCE
Confidence            45688999999999889999999998664

>2k9u_A Gamma filamin; cytoskeletal complex, alternative splicing, cell adhesion, cell junction, cell shape, cytoplasm, cytoskeleton; NMR {Homo sapiens}

Probab=90.96  E-value=0.27  Score=28.98  Aligned_cols=30  Identities=23%  Similarity=0.310  Sum_probs=25.6

Q ss_pred             hcCCCCceEEEEecCCCCCcEEEEEEeCCe
Q psy12508         26 LRNSNEGSYLVRNSESNRPDYSLSLKSARG   55 (113)
Q Consensus        26 L~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~   55 (113)
                      +.+..+|+|.|+-....+|.|.|+|+.+++
T Consensus        65 v~d~~dGty~v~Y~p~~~G~y~I~V~~~g~   94 (119)
T 2k9u_A           65 FEDRKDGSCGVSYVVQEPGDYEVSIKFNDE   94 (119)
T ss_dssp             EECCSSSEEEEEEECCSSEEEEEEEEETSC
T ss_pred             EEECCCCEEEEEEEECCCceEEEEEEECCE
Confidence            345789999999999889999999998764

>2w0p_A Filamin-A; alternative splicing, cytoskeleton/complex, phosphoprotein, disease mutation, immunoglobulin like, zinc, complex; 1.90A {Homo sapiens} SCOP: b.1.18.10 PDB: 2brq_A* 2jf1_A 3isw_A

Probab=90.96  E-value=0.21  Score=28.16  Aligned_cols=29  Identities=24%  Similarity=0.290  Sum_probs=24.8

Q ss_pred             cCCCCceEEEEecCCCCCcEEEEEEeCCe
Q psy12508         27 RNSNEGSYLVRNSESNRPDYSLSLKSARG   55 (113)
Q Consensus        27 ~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~   55 (113)
                      .+..+|+|.|+-....+|.|.|+|+.+++
T Consensus        51 ~d~~dGty~v~Y~p~~~G~y~I~V~~~g~   79 (94)
T 2w0p_A           51 EDRKDGSCGVAYVVQEPGDYEVSVKFNEE   79 (94)
T ss_dssp             EECTTSCEEEEEECSSCEEEEEEEEETTE
T ss_pred             EECCCCEEEEEEEECCCceEEEEEEECCE
Confidence            45688999999999889999999998764

>2dia_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=90.83  E-value=0.24  Score=28.88  Aligned_cols=29  Identities=24%  Similarity=0.409  Sum_probs=25.0

Q ss_pred             cCCCCceEEEEecCCCCCcEEEEEEeCCe
Q psy12508         27 RNSNEGSYLVRNSESNRPDYSLSLKSARG   55 (113)
Q Consensus        27 ~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~   55 (113)
                      .+..+|+|.|+-....+|.|.|+|+.+++
T Consensus        61 ~d~~dGty~v~Y~p~~~G~y~i~V~~~g~   89 (113)
T 2dia_A           61 QNNKDGTYAVTYVPLTAGMYTLTMKYGGE   89 (113)
T ss_dssp             EECTTSEEEEEEECSSCEEEEEEEEETTE
T ss_pred             EECCCCEEEEEEEeCCCccEEEEEEECCE
Confidence            45688999999999889999999998764

>1v05_A Filamin C; actin-binding protein, immunoglobulin; 1.43A {Homo sapiens} SCOP: b.1.18.10 PDB: 2eed_A

Probab=90.37  E-value=0.29  Score=27.62  Aligned_cols=29  Identities=21%  Similarity=0.279  Sum_probs=24.2

Q ss_pred             cCCCCceEEEEecCCCCCcEEEEEEeCCe
Q psy12508         27 RNSNEGSYLVRNSESNRPDYSLSLKSARG   55 (113)
Q Consensus        27 ~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~   55 (113)
                      .+..+|+|.|+-....+|.|.|+|+.+++
T Consensus        56 ~d~~dGty~v~Y~p~~~G~y~i~V~~~g~   84 (96)
T 1v05_A           56 KHMGNRVYNVTYTVKEKGDYILIVKWGDE   84 (96)
T ss_dssp             EECSTTEEEEEEECSSCEEEEEEEEETTE
T ss_pred             EeCCCCEEEEEEEeCCCEEEEEEEEECCE
Confidence            34578999999998888999999998763

>2ds4_A Tripartite motif protein 45; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=89.99  E-value=0.36  Score=27.84  Aligned_cols=30  Identities=10%  Similarity=0.311  Sum_probs=25.2

Q ss_pred             hcCCCCceEEEEecCCCCCcEEEEEEeCCe
Q psy12508         26 LRNSNEGSYLVRNSESNRPDYSLSLKSARG   55 (113)
Q Consensus        26 L~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~   55 (113)
                      +.+..+|+|.|+-....+|.|.|+|+..++
T Consensus        69 v~D~~dGty~v~y~p~~~G~y~i~V~~~g~   98 (113)
T 2ds4_A           69 VQDNKDGTYYISYTPKEPGVYTVWVCIKEQ   98 (113)
T ss_dssp             EECCSSSEEEEEEECSSSEEEEEEEEESSC
T ss_pred             EEECCCCEEEEEEEeCCCeEEEEEEEECCE
Confidence            345688999999999889999999998653

>2dic_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=89.78  E-value=0.29  Score=28.16  Aligned_cols=29  Identities=17%  Similarity=0.294  Sum_probs=24.9

Q ss_pred             cCCCCceEEEEecCCCCCcEEEEEEeCCe
Q psy12508         27 RNSNEGSYLVRNSESNRPDYSLSLKSARG   55 (113)
Q Consensus        27 ~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~   55 (113)
                      .+..+|+|.|+-....+|.|.|+|+.+++
T Consensus        59 ~d~~dGty~v~Y~p~~~G~y~I~V~~~g~   87 (105)
T 2dic_A           59 RDNKDGSCSAEYIPFAPGDYDVNITYGGA   87 (105)
T ss_dssp             EECSSSCEEEEECCSSCEEEEEEEEETTE
T ss_pred             EECCCCeEEEEEEeCCCeEEEEEEEECCE
Confidence            34688999999999889999999998764

>2di7_A BK158_1; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=89.36  E-value=0.27  Score=29.45  Aligned_cols=29  Identities=17%  Similarity=0.318  Sum_probs=23.9

Q ss_pred             cCCCCceEEEEe-cCCCCCcEEEEEEeCCe
Q psy12508         27 RNSNEGSYLVRN-SESNRPDYSLSLKSARG   55 (113)
Q Consensus        27 ~~~~~G~FLvR~-s~~~~~~~~Lsv~~~~~   55 (113)
                      .++.+|+|+||- ....++.|.+.|...++
T Consensus        78 ~Dn~DGsy~v~Yr~~~~~g~~~I~V~~~~~  107 (124)
T 2di7_A           78 LDRKDGSFIVRYRMYASYKNLKVEIKFQGQ  107 (124)
T ss_dssp             ECCSSSCCEEECCCCSCCSCCEEEEESSSC
T ss_pred             EECCCCeEEEEEECCCCCCCEEEEEEECCE
Confidence            456899999998 66667999999997764

>2dj4_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=89.20  E-value=0.37  Score=27.85  Aligned_cols=28  Identities=25%  Similarity=0.351  Sum_probs=23.7

Q ss_pred             CCCCceEEEEecCCCCCcEEEEEEeCCe
Q psy12508         28 NSNEGSYLVRNSESNRPDYSLSLKSARG   55 (113)
Q Consensus        28 ~~~~G~FLvR~s~~~~~~~~Lsv~~~~~   55 (113)
                      +..+|+|.|+-....+|.|.|+|+.++.
T Consensus        63 d~~dGty~v~Y~p~~~G~y~i~V~~~g~   90 (108)
T 2dj4_A           63 DNGDGTHTVTYTPSQEGPYMVSVKYADE   90 (108)
T ss_dssp             ECSSSEEEEEECCSSCEEEEEEEEESSS
T ss_pred             ECCCCEEEEEEEeCCCeeEEEEEEECCE
Confidence            4578999999998888999999998654

>2dmb_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=88.80  E-value=0.34  Score=28.87  Aligned_cols=28  Identities=11%  Similarity=0.267  Sum_probs=24.4

Q ss_pred             CCCCceEEEEecCCCCCcEEEEEEeCCe
Q psy12508         28 NSNEGSYLVRNSESNRPDYSLSLKSARG   55 (113)
Q Consensus        28 ~~~~G~FLvR~s~~~~~~~~Lsv~~~~~   55 (113)
                      +..+|+|.|+-....+|.|.|.|+.+++
T Consensus        63 d~~dGty~V~Y~p~~~G~y~I~V~~~g~   90 (124)
T 2dmb_A           63 ENEDGTYDIFYTAAKPGTYVIYVRFGGV   90 (124)
T ss_dssp             ECTTSCEEEEEECSSCEEEEEEEEESSC
T ss_pred             eCCCCEEEEEEEcCCCEEEEEEEEECCE
Confidence            4578999999999889999999998764

>2d7o_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=88.60  E-value=0.33  Score=28.28  Aligned_cols=29  Identities=17%  Similarity=0.337  Sum_probs=25.1

Q ss_pred             cCCCCceEEEEecCCCCCcEEEEEEeCCe
Q psy12508         27 RNSNEGSYLVRNSESNRPDYSLSLKSARG   55 (113)
Q Consensus        27 ~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~   55 (113)
                      .+..+|+|.|+-....+|.|.|.|+.+++
T Consensus        59 ~d~~dGty~V~Y~p~~~G~y~I~V~~~g~   87 (111)
T 2d7o_A           59 KDNKDGTCTVSYLPTAPGDYSIIVRFDDK   87 (111)
T ss_dssp             CCCSSSEEEEEECCSSCEEEEEECBBSSC
T ss_pred             EECCCCEEEEEEEeCCCeEEEEEEEECCE
Confidence            45688999999999989999999998654

>2di9_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=88.11  E-value=0.55  Score=28.15  Aligned_cols=29  Identities=10%  Similarity=0.185  Sum_probs=24.6

Q ss_pred             cCCCCceEEEEecCCCCCcEEEEEEeCCe
Q psy12508         27 RNSNEGSYLVRNSESNRPDYSLSLKSARG   55 (113)
Q Consensus        27 ~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~   55 (113)
                      .+..+|+|.|+-....+|.|.|+|+.+++
T Consensus        79 ~d~~dGty~v~Y~p~~~G~y~I~V~~~g~  107 (131)
T 2di9_A           79 SDNGDGTCSVSYLPTKPGEYFVNILFEEV  107 (131)
T ss_dssp             EECSSSEEEEEEECSSSSEEEEEEEESSC
T ss_pred             EECCCCEEEEEEEeCCCeeEEEEEEECCE
Confidence            34688999999999889999999998653

>2e9j_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.08  E-value=0.35  Score=28.48  Aligned_cols=29  Identities=14%  Similarity=0.344  Sum_probs=24.2

Q ss_pred             cCCCCceEEEEecCCCCCcEEEEEEeCCe
Q psy12508         27 RNSNEGSYLVRNSESNRPDYSLSLKSARG   55 (113)
Q Consensus        27 ~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~   55 (113)
                      .+..+|+|.|+-....+|.|.|+|+.+++
T Consensus        73 ~d~~dGty~v~Y~p~~~G~y~i~V~~~g~  101 (119)
T 2e9j_A           73 HDNKDGTYAVTYIPDKTGRYMIGVTYGGD  101 (119)
T ss_dssp             EECCSSEEEEEECCCSCSEEEECCEESSC
T ss_pred             EECCCCEEEEEEEeCCCEEEEEEEEECCE
Confidence            34578999999999889999999998764

>2ee6_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.85  E-value=0.26  Score=28.35  Aligned_cols=29  Identities=21%  Similarity=0.253  Sum_probs=24.4

Q ss_pred             cCCCCceEEEEecCCCCCcEEEEEEeCCe
Q psy12508         27 RNSNEGSYLVRNSESNRPDYSLSLKSARG   55 (113)
Q Consensus        27 ~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~   55 (113)
                      .+..+|+|.|+-....+|.|.|+|+.+++
T Consensus        59 ~d~~dGty~v~Y~p~~~G~y~I~V~~~g~   87 (105)
T 2ee6_A           59 DDHKNGSCGVSYIAQEPGNYEVSIKFNDE   87 (105)
T ss_dssp             CCCCSSCCCEEEEESSCEEEEEEEEETTE
T ss_pred             EECCCCEEEEEEEECCCceEEEEEEECCE
Confidence            45688999999888888999999998763

>3cnk_A Filamin-A; FLNA24, X-RAY crystalography, homodimer, acetylation, actin-binding, cytoplasm, cytoskeleton, disease mutation, phosphoprotein; 1.65A {Homo sapiens}

Probab=87.72  E-value=0.72  Score=25.51  Aligned_cols=29  Identities=17%  Similarity=0.271  Sum_probs=24.0

Q ss_pred             cCCCCceEEEEecCCCCCcEEEEEEeCCe
Q psy12508         27 RNSNEGSYLVRNSESNRPDYSLSLKSARG   55 (113)
Q Consensus        27 ~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~   55 (113)
                      .+..+|+|.|+-....+|.|.|+|+.+++
T Consensus        49 ~d~~dGty~v~Y~p~~~G~y~i~V~~~g~   77 (89)
T 3cnk_A           49 KHVGSRLYSVSYLLKDKGEYTLVVKWGHE   77 (89)
T ss_dssp             EEEETTEEEEEEECCSCEEEEEEEEETTE
T ss_pred             EECCCCEEEEEEEECCCccEEEEEEECCE
Confidence            34578999999998888999999998763

>2d7m_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=87.47  E-value=0.48  Score=27.64  Aligned_cols=28  Identities=18%  Similarity=0.400  Sum_probs=24.1

Q ss_pred             CCCCceEEEEecCCCCCcEEEEEEeCCe
Q psy12508         28 NSNEGSYLVRNSESNRPDYSLSLKSARG   55 (113)
Q Consensus        28 ~~~~G~FLvR~s~~~~~~~~Lsv~~~~~   55 (113)
                      +..+|+|.|+-....+|.|.|+|+.+++
T Consensus        64 d~~dGty~v~Y~p~~~G~y~i~V~~~g~   91 (115)
T 2d7m_A           64 DNGDGTYTVSYLPDMSGRYTITIKYGGD   91 (115)
T ss_dssp             ECSSSCEEEEECCCSCEEEEEEEEESSC
T ss_pred             ECCCCEEEEEEEeCCCceEEEEEEECCE
Confidence            4578999999999889999999998764

>2d7n_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=86.19  E-value=0.63  Score=26.33  Aligned_cols=30  Identities=13%  Similarity=0.296  Sum_probs=25.1

Q ss_pred             hcCCCCceEEEEecCCCCCcEEEEEEeCCe
Q psy12508         26 LRNSNEGSYLVRNSESNRPDYSLSLKSARG   55 (113)
Q Consensus        26 L~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~   55 (113)
                      +.+..+|+|-|.-.+...|.|.|+|+.++.
T Consensus        40 v~d~~dGtY~v~ytP~e~G~h~v~V~~~g~   69 (93)
T 2d7n_A           40 ITDNKDGTITVRYAPTEKGLHQMGIKYDGN   69 (93)
T ss_dssp             EEECSSSCEEEEECCSSCEEEEEEEEESSS
T ss_pred             EEECCCCEEEEEEEccCCEEEEEEEEECCE
Confidence            344688999999999999999999998653

>2dib_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=85.74  E-value=0.68  Score=27.48  Aligned_cols=29  Identities=10%  Similarity=0.153  Sum_probs=24.5

Q ss_pred             cCCCCceEEEEecCCCCCcEEEEEEeCCe
Q psy12508         27 RNSNEGSYLVRNSESNRPDYSLSLKSARG   55 (113)
Q Consensus        27 ~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~   55 (113)
                      .+..+|+|.|+-.....|.|.|+|+.++.
T Consensus        76 ~d~~dGty~v~Y~p~~~G~~~i~V~~~g~  104 (128)
T 2dib_A           76 TDNADGTYQVEYTPFEKGLHVVEVTYDDV  104 (128)
T ss_dssp             EECSSSEEEEEECCSSCSEEEEEEBSSSC
T ss_pred             EECCCCEEEEEEEeCCCEeEEEEEEECCE
Confidence            34578999999999889999999998663

>2ee9_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=84.93  E-value=0.74  Score=26.21  Aligned_cols=29  Identities=14%  Similarity=0.184  Sum_probs=24.3

Q ss_pred             cCCCCceEEEEecCCCCCcEEEEEEeCCe
Q psy12508         27 RNSNEGSYLVRNSESNRPDYSLSLKSARG   55 (113)
Q Consensus        27 ~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~   55 (113)
                      .+..+|+|-|+-.+...|.|.|+|+.++.
T Consensus        49 ~d~~dGtY~v~ytP~e~G~h~v~V~~~G~   77 (95)
T 2ee9_A           49 VDNKDGTVTVRYAPTEVGLHEMHIKYMGS   77 (95)
T ss_dssp             EECSSSCEEEECCCCSSEEEEEEEEESSC
T ss_pred             EeCCCCeEEEEEEecCCEeEEEEEEECCE
Confidence            34578999999999999999999998653

>2dlg_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=84.82  E-value=0.99  Score=25.92  Aligned_cols=29  Identities=17%  Similarity=-0.016  Sum_probs=24.4

Q ss_pred             cCCCCceEEEEecCCCCCcEEEEEEeCCe
Q psy12508         27 RNSNEGSYLVRNSESNRPDYSLSLKSARG   55 (113)
Q Consensus        27 ~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~   55 (113)
                      ++..+|+|-|+-.+...|.|.|+|+.++.
T Consensus        50 ~d~~dGty~v~ytP~e~G~h~v~V~~~g~   78 (102)
T 2dlg_A           50 VPMGKNSHCVRFVPQEMGVHTVSVKYRGQ   78 (102)
T ss_dssp             EECSSSEEEEEBCCCTTCEEEEEEESSSS
T ss_pred             EECCCCEEEEEEEecCCEeEEEEEEECCE
Confidence            34578999999999999999999998663

>2d7p_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10 PDB: 2eeb_A

Probab=83.02  E-value=1.4  Score=25.68  Aligned_cols=29  Identities=10%  Similarity=0.017  Sum_probs=24.1

Q ss_pred             cCCCCceEEEEecCCCCCcEEEEEEeCCe
Q psy12508         27 RNSNEGSYLVRNSESNRPDYSLSLKSARG   55 (113)
Q Consensus        27 ~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~   55 (113)
                      ++..+|+|.|+-.+...|.|.|+|+.++.
T Consensus        60 ~d~~~gty~v~ytP~~~G~h~v~V~~~g~   88 (112)
T 2d7p_A           60 SELDSDKHTIRFIPHENGVHSIDVKFNGA   88 (112)
T ss_dssp             CSCBTTEEEEEECCSSCEEEEEEEEESSC
T ss_pred             EeCCCCeEEEEEEcCCCEeEEEEEEECCe
Confidence            34578999999999889999999998664

>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3 domain, PR binding; 3.45A {Homo sapiens}

Probab=81.55  E-value=0.34  Score=26.88  Aligned_cols=19  Identities=21%  Similarity=0.244  Sum_probs=0.0

Q ss_pred             CCCCceeecCCHHHHHHHhc
Q psy12508          8 DQRNWYHGSVTRHEAENILR   27 (113)
Q Consensus         8 ~~~~w~~g~i~r~~ae~lL~   27 (113)
                      ...+ |+|.++|.+|+.+|.
T Consensus        63 ~~~~-~~~~~~r~~ae~lL~   81 (90)
T 3reb_B           63 GGTS-GGGRHRRRQAERMSQ   81 (90)
T ss_dssp             --------------------
T ss_pred             CCcc-cccCcCHHHHHHHHh
Confidence            3444 999999999999985

>2eec_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=81.43  E-value=1.5  Score=26.10  Aligned_cols=26  Identities=27%  Similarity=0.386  Sum_probs=23.0

Q ss_pred             CCCCceEEEEecCCCCCcEEEEEEeCC
Q psy12508         28 NSNEGSYLVRNSESNRPDYSLSLKSAR   54 (113)
Q Consensus        28 ~~~~G~FLvR~s~~~~~~~~Lsv~~~~   54 (113)
                      +..+| |.|+-....+|.|.|+|+.++
T Consensus        70 d~~dG-y~V~Y~P~~~G~y~I~V~~~g   95 (125)
T 2eec_A           70 ETPEG-YKVMYTPMAPGNYLISVKYGG   95 (125)
T ss_dssp             ECSSS-EEEEECCSSCEEEEEEEEESS
T ss_pred             ECCCC-EEEEEEcCCCeEEEEEEEECC
Confidence            45789 999999988999999999877

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	113
d1mila_	104	d.93.1.1 (A:) Shc adaptor protein {Human (Homo sap	8e-25
d1fu6a_	111	d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-a	1e-24
d1r1qa_	97	d.93.1.1 (A:) GRB2-related adaptor protein 2 (MONA	3e-23
d2shpa3	108	d.93.1.1 (A:111-218) Tyrosine phoshatase shp-2 {Hu	5e-23
d1rpya_	86	d.93.1.1 (A:) Adaptor protein Aps {Rat (Rattus nor	1e-22
d1qada_	107	d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-a	1e-22
d1jyra_	96	d.93.1.1 (A:) Growth factor receptor-bound protein	2e-22
d2shpa2	109	d.93.1.1 (A:2-110) Tyrosine phoshatase shp-2 {Huma	2e-22
d1nrva_	105	d.93.1.1 (A:) Growth factor receptor-bound protein	6e-22
d2eyva1	109	d.93.1.1 (A:12-120) Crk proto-oncogen {Human (Homo	9e-22
d2izva2	112	d.93.1.1 (A:274-385) Suppressor of cytokine signal	6e-21
d1opka2	101	d.93.1.1 (A:140-240) Abl tyrosine kinase {Mouse (M	8e-21
d2cs0a1	106	d.93.1.1 (A:8-113) Hematopoietic SH2 domain contai	1e-20
d1d4ta_	104	d.93.1.1 (A:) The Xlp protein Sap {Human (Homo sap	2e-20
d1jwoa_	97	d.93.1.1 (A:) Csk homologous kinase Chk {Human (Ho	2e-20
d2qmsa1	113	d.93.1.1 (A:420-532) Growth factor receptor-bound	3e-20
d2oq1a1	130	d.93.1.1 (A:5-134) Tyrosine-protein kinase zap-70	3e-20
d2c9wa2	103	d.93.1.1 (A:32-134) Suppressor of cytokine signali	5e-20
d1k9aa2	101	d.93.1.1 (A:77-177) Carboxyl-terminal src kinase (	2e-19
d2fcia1	105	d.93.1.1 (A:1-105) Phospholipase C-gamma-1 {Cow (B	4e-19
d1o48a_	106	d.93.1.1 (A:) c-src tyrosine kinase {Human (Homo s	6e-19
d1rjaa_	100	d.93.1.1 (A:) Tyrosine-protein kinase 6 (Breast tu	7e-19
d1lkka_	105	d.93.1.1 (A:) p56-lck tyrosine kinase {Human (Homo	3e-18
d1i3za_	103	d.93.1.1 (A:) Ews/fli1 activated transcript 2, Eat	4e-18
d1xa6a2	141	d.93.1.1 (A:21-161) Beta-chimaerin, N-terminal dom	2e-17
d1blja_	114	d.93.1.1 (A:) P55 Blk protein tyrosine kinase {Mou	4e-17
d1a81a1	129	d.93.1.1 (A:9-137) Syk tyrosine kinase {Human (Hom	6e-17
d1bg1a3	141	d.93.1.1 (A:576-716) STAT3b {Mouse (Mus musculus)	9e-17
d2oq1a2	124	d.93.1.1 (A:135-258) Tyrosine-protein kinase zap-7	1e-16
d1qcfa2	103	d.93.1.1 (A:146-248) Hemopoetic cell kinase Hck {H	3e-16
d1g83a2	104	d.93.1.1 (A:142-245) Tyrosine kinase Fyn {Human (H	4e-16
d1a81a2	125	d.93.1.1 (A:138-262) Syk tyrosine kinase {Human (H	8e-15
d1luia_	108	d.93.1.1 (A:) Itk/tsk protein tyrosine kinase {Mou	1e-14
d1uura3	131	d.93.1.1 (A:577-707) STAT homologue {Dictyostelium	2e-14
d1bf5a3	142	d.93.1.1 (A:569-710) STAT-1 {Human (Homo sapiens)	0.002

>d1mila_ d.93.1.1 (A:) Shc adaptor protein {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Shc adaptor protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.1 bits (218), Expect = 8e-25
 Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 7/107 (6%)

Query: 7   LDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPD 66
           L    W+HG ++R EAE +L+    G +LVR S +    Y L+   +    H+ +     
Sbjct: 4   LRGEPWFHGKLSRREAEALLQL--NGDFLVRESTTTPGQYVLTGLQSGQPKHLLLVD--P 59

Query: 67  TGKFILGQFSAPFDSVPEMIQHFAENRLPIL-GAEHMCLLHPMIEQL 112
            G          F+SV  +I +  +N LPI+     +CL  P+  +L
Sbjct: 60  EGVVRTKDHR--FESVSHLISYHMDNHLPIISAGSELCLQQPVERKL 104

>d1fu6a_ d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-alpha subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 111

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Phosphatidylinositol 3-kinase, p85-alpha subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 88.1 bits (218), Expect = 1e-24
 Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 5/109 (4%)

Query: 1   MANPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRP-DYSLSLKSARGFMHM 59
           M N   L    WY G ++R E    LR++ +G++LVR++ +    DY+L+L+       +
Sbjct: 2   MNNNMSLQDAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKSI 61

Query: 60  KIQRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAE-HMCLLHP 107
           KI      GK+        F+SV E+I H+    L     +  + LL+P
Sbjct: 62  KIFHRD--GKYGFSD-PLTFNSVVELINHYRNESLAQYNPKLDVKLLYP 107

>d1r1qa_ d.93.1.1 (A:) GRB2-related adaptor protein 2 (MONA, GRID) {Mouse (Mus musculus) [TaxId: 10090]} Length = 97

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: GRB2-related adaptor protein 2 (MONA, GRID)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 83.8 bits (207), Expect = 3e-23
 Identities = 25/93 (26%), Positives = 51/93 (54%), Gaps = 5/93 (5%)

Query: 12  WYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFI 71
           W+H  ++RH+AEN+L   + G +++R S+S+  D+S+S++      H K+ RD   G + 
Sbjct: 8   WFHEGLSRHQAENLLMGKDIGFFIIRASQSSPGDFSISVRHEDDVQHFKVMRDTK-GNYF 66

Query: 72  LGQFSAPFDSVPEMIQHFAENRLPILGAEHMCL 104
           L   +  F S+ +++ ++      I   + + L
Sbjct: 67  LW--TEKFPSLNKLVDYYRTT--SISKQKQVFL 95

>d2shpa3 d.93.1.1 (A:111-218) Tyrosine phoshatase shp-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine phoshatase shp-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.6 bits (206), Expect = 5e-23
 Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 8/104 (7%)

Query: 12  WYHGSVTRHEAENILR-NSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKF 70
           W+HG ++  EAE +L      GS+LVR S+S+  D+ LS+++          +   T   
Sbjct: 2   WFHGHLSGKEAEKLLTEKGKHGSFLVRESQSHPGDFVLSVRTGDDKGESNDGKSKVTHVM 61

Query: 71  ILGQF-------SAPFDSVPEMIQHFAENRLPILGAEHMCLLHP 107
           I  Q           FDS+ ++++H+ +N +       + L  P
Sbjct: 62  IRCQELKYDVGGGERFDSLTDLVEHYKKNPMVETLGTVLQLKQP 105

>d1rpya_ d.93.1.1 (A:) Adaptor protein Aps {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 86

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Adaptor protein Aps
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 82.3 bits (203), Expect = 1e-22
 Identities = 19/86 (22%), Positives = 42/86 (48%), Gaps = 6/86 (6%)

Query: 7  LDQRNWYHGSVTRHEAENILRNS---NEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQR 63
          L    W+HG+++R +A  ++      + G +++R SE+   +  L+        H+++  
Sbjct: 2  LSDYPWFHGTLSRVKAAQLVLAGGPRSHGLFVIRQSETRPGECVLTFNFQGKAKHLRLSL 61

Query: 64 DPDTGKFILGQFSAPFDSVPEMIQHF 89
          +   G+  +      F SV +M++HF
Sbjct: 62 NGH-GQCHVQHLW--FQSVFDMLRHF 84

>d1qada_ d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-alpha subunit {Cow (Bos taurus) [TaxId: 9913]} Length = 107

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Phosphatidylinositol 3-kinase, p85-alpha subunit
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 82.8 bits (204), Expect = 1e-22
 Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 4/104 (3%)

Query: 7   LDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPD 66
            D++ W  GS  R++AEN+LR   +G++LVR S S +  Y+ S+       H  I +   
Sbjct: 6   HDEKTWNVGSSNRNKAENLLRGKRDGTFLVRES-SKQGCYACSVVVDGEVKHCVINKTAT 64

Query: 67  TGKFILGQFSAPFDSVPEMIQHFAENRLPILGAE-HMCLLHPMI 109
              +   +    + S+ E++ H+    L       ++ L +P+ 
Sbjct: 65  --GYGFAEPYNLYSSLKELVLHYQHTSLVQHNDSLNVTLAYPVY 106

>d1jyra_ d.93.1.1 (A:) Growth factor receptor-bound protein 2 (GRB2) {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Growth factor receptor-bound protein 2 (GRB2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.3 bits (203), Expect = 2e-22
 Identities = 28/94 (29%), Positives = 50/94 (53%), Gaps = 6/94 (6%)

Query: 12  WYHGSVTRHEAENIL-RNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKF 70
           W+ G + R +AE +L +  ++G++L+R SES   D+SLS+K      H K+ RD   GK+
Sbjct: 5   WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGA-GKY 63

Query: 71  ILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCL 104
            L      F+S+ E++ +       +   + + L
Sbjct: 64  FLWV--VKFNSLNELVDYHRST--SVSRNQQIFL 93

>d2shpa2 d.93.1.1 (A:2-110) Tyrosine phoshatase shp-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine phoshatase shp-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.4 bits (203), Expect = 2e-22
 Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 6/101 (5%)

Query: 10  RNWYHGSVTRHEAENILRNSNE-GSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTG 68
           R W+H ++T  EAEN+L      GS+L R S+SN  D +LS++      H+KIQ   D  
Sbjct: 3   RRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDLTLSVRRNGAVTHIKIQNTGDYY 62

Query: 69  KFILGQFSAPFDSVPEMIQHFAENRLPILGA--EHMCLLHP 107
               G+    F ++ E++Q++ E+   +     + + L +P
Sbjct: 63  DLYGGE---KFATLAELVQYYMEHHGQLKEKNGDVIELKYP 100

>d1nrva_ d.93.1.1 (A:) Growth factor receptor-bound protein 10, GRB10 {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Growth factor receptor-bound protein 10, GRB10
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.8 bits (199), Expect = 6e-22
 Identities = 23/100 (23%), Positives = 47/100 (47%), Gaps = 8/100 (8%)

Query: 12  WYHGSVTRHEAENIL--RNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTG- 68
           W+HG ++R E+  I+  +   +G +L+R+S+SN   + L+L   +   + +I    D G 
Sbjct: 7   WFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPCEDDGQ 66

Query: 69  -KFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHP 107
             F L   +  F  + +++  +  N+  +       L H 
Sbjct: 67  TFFSLDDGNTKFSDLIQLVDFYQLNKGVLP----CKLKHH 102

>d2eyva1 d.93.1.1 (A:12-120) Crk proto-oncogen {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Crk proto-oncogen
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.6 bits (198), Expect = 9e-22
 Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 19/111 (17%)

Query: 12  WYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFI 71
           WY G ++R EA  +L+    G +LVR+S ++  DY LS+       H  I          
Sbjct: 2   WYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVP 61

Query: 72  LGQFSAP--------------FDSVPEMIQHFAENRLPILGAEHMCLLHPM 108
                 P              FDS+P +++ +  + L     +   L+ P+
Sbjct: 62  PSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYL-----DTTTLIEPV 107

>d2izva2 d.93.1.1 (A:274-385) Suppressor of cytokine signaling 4, SOCS-4 {Human (Homo sapiens) [TaxId: 9606]} Length = 112

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Suppressor of cytokine signaling 4, SOCS-4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.6 bits (193), Expect = 6e-21
 Identities = 18/108 (16%), Positives = 44/108 (40%), Gaps = 3/108 (2%)

Query: 1   MANPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMK 60
           + +   ++    Y G + ++ AE +L    EG++L+R+S      +S+S +     +H +
Sbjct: 2   VPDLLQINNNPCYWGVMDKYAAEALLEGKPEGTFLLRDSAQEDYLFSVSFRRYSRSLHAR 61

Query: 61  IQRDPDTGKFILGQFSAP-FDSVPEMIQHFAENRLPILGAEHMCLLHP 107
           I++      F            +  +++H+ +    +       L  P
Sbjct: 62  IEQWNHNFSFDAHDPCVFHSPDITGLLEHYKDPSACMFF--EPLLSTP 107

>d1opka2 d.93.1.1 (A:140-240) Abl tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 101

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Abl tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.8 bits (191), Expect = 8e-21
 Identities = 29/101 (28%), Positives = 53/101 (52%), Gaps = 6/101 (5%)

Query: 7   LDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPD 66
           L++ +WYHG V+R+ AE +L +   GS+LVR SES+    S+SL+      H +I    D
Sbjct: 2   LEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASD 61

Query: 67  TGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHP 107
              ++  +    F+++ E++ H +     ++      L +P
Sbjct: 62  GKLYVSSESR--FNTLAELVHHHSTVADGLI----TTLHYP 96

>d2cs0a1 d.93.1.1 (A:8-113) Hematopoietic SH2 domain containing protein HSH2D {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Hematopoietic SH2 domain containing protein HSH2D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.8 bits (191), Expect = 1e-20
 Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 5/96 (5%)

Query: 12  WYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFI 71
           W+HG+++R +AEN+L +   GS+L+R S S+   Y+LS K+     H  ++   D G F+
Sbjct: 11  WFHGAISREDAENLLESQPLGSFLIRVSHSH-VGYTLSYKAQSSCCHFMVKLLDD-GTFM 68

Query: 72  LGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHP 107
           +        S+  ++    +  +         L  P
Sbjct: 69  IPGEKVAHTSLDALVTFHQQKPIEPRR---ELLTQP 101

>d1d4ta_ d.93.1.1 (A:) The Xlp protein Sap {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: The Xlp protein Sap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.0 bits (189), Expect = 2e-20
 Identities = 23/105 (21%), Positives = 40/105 (38%), Gaps = 8/105 (7%)

Query: 7   LDQRNWYHGSVTRHEAENILR-NSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDP 65
           +D    YHG ++R   E +L     +GSYL+R+SES    Y L +         ++ +  
Sbjct: 1   MDAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTE 60

Query: 66  DTGKFILGQFSAP---FDSVPEMIQHFAENRLPILGAEHMCLLHP 107
                           F  +  +I  F +    I+    + L +P
Sbjct: 61  TGSWSAETAPGVHKRYFRKIKNLISAFQKPDQGIV----IPLQYP 101

>d1jwoa_ d.93.1.1 (A:) Csk homologous kinase Chk {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Csk homologous kinase Chk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.0 bits (189), Expect = 2e-20
 Identities = 23/96 (23%), Positives = 48/96 (50%), Gaps = 7/96 (7%)

Query: 12  WYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFI 71
           W+HG ++  EA   L+   +G +LVR S  +  DY L +   R  +H ++      G   
Sbjct: 6   WFHGKISGQEAVQQLQPPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHRD--GHLT 63

Query: 72  LGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHP 107
           + + +  F ++ +M++H+++++  I       L+ P
Sbjct: 64  IDE-AVFFCNLMDMVEHYSKDKGAIC----TKLVRP 94

>d2qmsa1 d.93.1.1 (A:420-532) Growth factor receptor-bound protein 7 {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Growth factor receptor-bound protein 7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.5 bits (188), Expect = 3e-20
 Identities = 23/100 (23%), Positives = 45/100 (45%), Gaps = 8/100 (8%)

Query: 12  WYHGSVTRHEAENIL--RNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGK 69
           W+HG ++R E++ ++  +   +G +LVR S+ N   + LSL   +   H  I    + G+
Sbjct: 12  WFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLILPSEEEGR 71

Query: 70  --FILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHP 107
             F +      F  + ++++    NR  +       L H 
Sbjct: 72  LYFSMDDGQTRFTDLLQLVEFHQLNRGIL----PCLLRHC 107

>d2oq1a1 d.93.1.1 (A:5-134) Tyrosine-protein kinase zap-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine-protein kinase zap-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.0 bits (189), Expect = 3e-20
 Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 8/104 (7%)

Query: 6   PLDQRNWYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLKSARGFMHMKIQR 63
           P     +++GS++R EAE  L+ +   +G +L+R    +   Y LSL     F H  I+R
Sbjct: 2   PAAHLPFFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIER 61

Query: 64  DPDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHP 107
             +    I G  +       E+ + ++ +   +       L  P
Sbjct: 62  QLNGTYAIAGGKA--HCGPAELCEFYSRDPDGLP----CNLRKP 99

>d2c9wa2 d.93.1.1 (A:32-134) Suppressor of cytokine signaling 2, SOCS-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Suppressor of cytokine signaling 2, SOCS-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.8 bits (186), Expect = 5e-20
 Identities = 24/92 (26%), Positives = 49/92 (53%), Gaps = 4/92 (4%)

Query: 5   KPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRD 64
           + L Q  WY GS+T +EA+  L+ + EG++L+R+S  +    ++S+K++ G  +++I+  
Sbjct: 10  RELGQTGWYWGSMTVNEAKEKLKEAPEGTFLIRDSSHSDYLLTISVKTSAGPTNLRIEYQ 69

Query: 65  PDTGKFILGQFSAP----FDSVPEMIQHFAEN 92
               +             FDSV  +I ++ + 
Sbjct: 70  DGKFRLDSIICVKSKLKQFDSVVHLIDYYVQM 101

>d1k9aa2 d.93.1.1 (A:77-177) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.3 bits (182), Expect = 2e-19
 Identities = 22/100 (22%), Positives = 44/100 (44%), Gaps = 7/100 (7%)

Query: 12  WYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFI 71
           W+HG +TR +AE +L     G +LVR S +   DY+L +       H +I          
Sbjct: 6   WFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSCEGKVEHYRIMYHASKLSID 65

Query: 72  LGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQ 111
                  F+++ ++++H+  +   +       L+ P + +
Sbjct: 66  EEV---YFENLMQLVEHYTTDADGLC----TRLIKPKVME 98

>d2fcia1 d.93.1.1 (A:1-105) Phospholipase C-gamma-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 105

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Phospholipase C-gamma-1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 73.5 bits (180), Expect = 4e-19
 Identities = 29/111 (26%), Positives = 59/111 (53%), Gaps = 10/111 (9%)

Query: 2   ANPKPLDQRNWYHGSVTRHEAENILRNSNE-GSYLVRNSESNRPDYSLSLKSARGFMHMK 60
            +P   + + WYH S+TR +AE++L      G++LVR   +    Y++S ++     H +
Sbjct: 1   GSPGIHESKEWYHASLTRAQAEHMLMRVPRDGAFLVRKR-NEPNSYAISFRAEGKIKHCR 59

Query: 61  IQRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQ 111
           +Q++      +LG   + FDS+ ++I ++ ++ L       M L +P+ E+
Sbjct: 60  VQQEG--QTVMLGN--SEFDSLVDLISYYEKHPLY----RKMKLRYPINEE 102

>d1o48a_ d.93.1.1 (A:) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.2 bits (179), Expect = 6e-19
 Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 9/93 (9%)

Query: 7  LDQRNWYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLKSARG-----FMHM 59
          +    WY G +TR E+E +L N+    G++LVR SE+ +  Y LS+            H 
Sbjct: 2  IQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHY 61

Query: 60 KIQRDPDTGKFILGQFSAPFDSVPEMIQHFAEN 92
          KI++    G +I  +    F+S+ +++ +++++
Sbjct: 62 KIRKLDSGGFYITSR--TQFNSLQQLVAYYSKH 92

>d1rjaa_ d.93.1.1 (A:) Tyrosine-protein kinase 6 (Breast tumor kinase, Brk) {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine-protein kinase 6 (Breast tumor kinase, Brk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.8 bits (178), Expect = 7e-19
 Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 8/98 (8%)

Query: 12  WYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGK 69
           W+ G ++R EA   L+      G++L+R SE    DY LS++  +   H KI R      
Sbjct: 4   WFFGCISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAGGRL 63

Query: 70  FILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHP 107
            +       F S+PE++ +     L       + L  P
Sbjct: 64  HLNEA--VSFLSLPELVNYHRAQSLSH----GLRLAAP 95

>d1lkka_ d.93.1.1 (A:) p56-lck tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: p56-lck tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.2 bits (174), Expect = 3e-18
 Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 9/93 (9%)

Query: 7  LDQRNWYHGSVTRHEAENIL--RNSNEGSYLVRNSESNRPDYSLSLKSARG-----FMHM 59
          L+   W+  +++R +AE  L    +  GS+L+R SES    +SLS++           H 
Sbjct: 1  LEPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHY 60

Query: 60 KIQRDPDTGKFILGQFSAPFDSVPEMIQHFAEN 92
          KI+   + G +I  +    F  + E+++H+   
Sbjct: 61 KIRNLDNGGFYISPR--ITFPGLHELVRHYTNA 91

>d1i3za_ d.93.1.1 (A:) Ews/fli1 activated transcript 2, Eat2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 103

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Ews/fli1 activated transcript 2, Eat2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 70.8 bits (173), Expect = 4e-18
 Identities = 22/100 (22%), Positives = 46/100 (46%), Gaps = 8/100 (8%)

Query: 12  WYHGSVTRHEAENIL-RNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKF 70
           +YHG +T+ E E +L +   +G++L+R+SES      L +   +     +I R+      
Sbjct: 5   YYHGCLTKRECEALLLKGGVDGNFLIRDSESVPGALCLCVSFKKLVYSYRIFREKHGYYR 64

Query: 71  ILGQFSAP---FDSVPEMIQHFAENRLPILGAEHMCLLHP 107
           I      P   F ++ E++  + +    ++    + L +P
Sbjct: 65  IETDAHTPRTIFPNLQELVSKYGKPGQGLV----VHLSNP 100

>d1xa6a2 d.93.1.1 (A:21-161) Beta-chimaerin, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 141

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Beta-chimaerin, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.4 bits (172), Expect = 2e-17
 Identities = 20/85 (23%), Positives = 45/85 (52%), Gaps = 6/85 (7%)

Query: 4   PKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQR 63
            +P      +HG ++R +A+ +L    EG+Y++R S+     Y+L+L+     ++ ++  
Sbjct: 29  NRPKYYGREFHGIISREQADELLGGV-EGAYILRESQRQPGCYTLALRFGNQTLNYRLFH 87

Query: 64  DPDTGKFILGQFSAPFDSVPEMIQH 88
           D   GK  +G+    F+S+ +++  
Sbjct: 88  D---GKHFVGE--KRFESIHDLVTD 107

>d1blja_ d.93.1.1 (A:) P55 Blk protein tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: P55 Blk protein tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 69.0 bits (168), Expect = 4e-17
 Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 8/101 (7%)

Query: 2   ANPKPLDQRNWYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLKSARGFM-- 57
           A  + L+   W+  +++R +AE  L       GS+L+R SESN+  +SLS+K        
Sbjct: 4   APVETLEVEKWFFRTISRKDAERQLLAPMNKAGSFLIRESESNKGAFSLSVKDITTQGEV 63

Query: 58  --HMKIQRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPI 96
             H KI+   + G +I  +    F ++  ++QH+++    +
Sbjct: 64  VKHYKIRSLDNGGYYISPR--ITFPTLQALVQHYSKKGDGL 102

>d1a81a1 d.93.1.1 (A:9-137) Syk tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 129

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Syk tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.9 bits (168), Expect = 6e-17
 Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 4/89 (4%)

Query: 7  LDQRNWYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRD 64
           +   ++ G++TR EAE+ L      +G YL+R S +    ++LS+   R   H  I+R+
Sbjct: 2  ANHLPFFFGNITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRKAHHYTIERE 61

Query: 65 PDTGKFILGQFSAPFDSVPEMIQHFAENR 93
           +    I G  +    S  ++  + ++  
Sbjct: 62 LNGTYAIAGGRT--HASPADLCHYHSQES 88

>d1bg1a3 d.93.1.1 (A:576-716) STAT3b {Mouse (Mus musculus) [TaxId: 10090]} Length = 141

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: STAT3b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.8 bits (168), Expect = 9e-17
 Identities = 20/108 (18%), Positives = 40/108 (37%), Gaps = 8/108 (7%)

Query: 6   PLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRP-DYSLSLKSARGFMHMKIQ-R 63
            L    +  G +++     IL     G++L+R SES++    + +          +IQ  
Sbjct: 3   ALWNEGYIMGFISKERERAILSTKPPGTFLLRFSESSKEGGVTFTWVEKDISGSTQIQSV 62

Query: 64  DPDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQ 111
           +P T +           S  E+I  +       +    +  L+P I +
Sbjct: 63  EPYTKQ------QLNNMSFAEIIMGYKIMDATNILVSPLVYLYPDIPK 104

>d2oq1a2 d.93.1.1 (A:135-258) Tyrosine-protein kinase zap-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine-protein kinase zap-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.2 bits (166), Expect = 1e-16
 Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 9/98 (9%)

Query: 12  WYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGK 69
           WYH S+TR EAE  L +    +G +L+R  +     Y+LSL   +   H  I +D   GK
Sbjct: 31  WYHSSLTREEAERKLYSGAQTDGKFLLRPRKEQG-TYALSLIYGKTVYHYLISQDKA-GK 88

Query: 70  FILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHP 107
           + + +    FD++ +++++       ++     CL   
Sbjct: 89  YCIPE-GTKFDTLWQLVEYLKLKADGLI----YCLKEA 121

>d1qcfa2 d.93.1.1 (A:146-248) Hemopoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Hemopoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.3 bits (161), Expect = 3e-16
 Identities = 22/88 (25%), Positives = 46/88 (52%), Gaps = 9/88 (10%)

Query: 12 WYHGSVTRHEAENIL--RNSNEGSYLVRNSESNRPDYSLSLKSARGFM-----HMKIQRD 64
          W+   ++R +AE  L    +  GS+++R+SE+ +  YSLS++           H KI+  
Sbjct: 3  WFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKIRTL 62

Query: 65 PDTGKFILGQFSAPFDSVPEMIQHFAEN 92
           + G +I  +  + F ++ E++ H+ + 
Sbjct: 63 DNGGFYISPR--STFSTLQELVDHYKKG 88

>d1g83a2 d.93.1.1 (A:142-245) Tyrosine kinase Fyn {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine kinase Fyn
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.9 bits (160), Expect = 4e-16
 Identities = 28/108 (25%), Positives = 54/108 (50%), Gaps = 13/108 (12%)

Query: 7   LDQRNWYHGSVTRHEAENILRNSN--EGSYLVRNSESNRPDYSLSLKSARGF-----MHM 59
           +    WY G + R +AE  L +     G++L+R SE+ +  YSLS++           H 
Sbjct: 3   IQAEEWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHY 62

Query: 60  KIQRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHP 107
           KI++  + G +I  +  A F+++ +++QH++E    +       L+ P
Sbjct: 63  KIRKLDNGGYYITTR--AQFETLQQLVQHYSERAAGLS----SRLVVP 104

>d1a81a2 d.93.1.1 (A:138-262) Syk tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Syk tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.2 bits (153), Expect = 8e-15
 Identities = 23/98 (23%), Positives = 46/98 (46%), Gaps = 9/98 (9%)

Query: 12  WYHGSVTRHEAENIL--RNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGK 69
           W+HG ++R E+E I+   +   G +L+R  ++    Y+L L      +H +I +D     
Sbjct: 31  WFHGKISREESEQIVLIGSKTNGKFLIRARDN-NGSYALCLLHEGKVLHYRIDKDKTGKL 89

Query: 70  FILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHP 107
            I       FD++ ++++H++     +L      L  P
Sbjct: 90  SIPEG--KKFDTLWQLVEHYSYKADGLL----RVLTVP 121

>d1luia_ d.93.1.1 (A:) Itk/tsk protein tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 108

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Itk/tsk protein tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.4 bits (151), Expect = 1e-14
 Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 12/108 (11%)

Query: 7   LDQRNWYHGSVTRHEAENILRNSN-EGSYLVRNSESNRPDYSLSLKS------ARGFMHM 59
           L+   WY+ S++R +AE +L ++  EG+++VR+S +    Y++S+ +           H 
Sbjct: 3   LETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDSRTPG-TYTVSVFTKAIISENPCIKHY 61

Query: 60  KIQRDPDTGKFILGQFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHP 107
            I+   D+ K         FDS+P +IQ+   N   ++      L +P
Sbjct: 62  HIKETNDSPKRYYVAEKYVFDSIPLLIQYHQYNGGGLV----TRLRYP 105

>d1uura3 d.93.1.1 (A:577-707) STAT homologue {Dictyostelium discoideum [TaxId: 44689]} Length = 131

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: STAT homologue
species: Dictyostelium discoideum [TaxId: 44689]

 Score = 61.9 bits (150), Expect = 2e-14
 Identities = 18/88 (20%), Positives = 34/88 (38%), Gaps = 8/88 (9%)

Query: 5  KPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARG---FMHMKI 61
            L Q    +G + R E  + L+N + G++++R SE N   + ++           H  +
Sbjct: 4  STLWQEGIIYGYMGRQEVNDALQNQDPGTFIIRFSERNPGQFGIAYIGVEMPARIKHYLV 63

Query: 62 QRDPDTGKFILGQFSAPFDSVPEMIQHF 89
          Q +           + P D + E  Q  
Sbjct: 64 QPNDTAAAKK----TFP-DFLSEHSQFV 86

>d1bf5a3 d.93.1.1 (A:569-710) STAT-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 142

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: STAT-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.3 bits (76), Expect = 0.002
 Identities = 10/37 (27%), Positives = 20/37 (54%), Gaps = 4/37 (10%)

Query: 12 WYHGS----VTRHEAENILRNSNEGSYLVRNSESNRP 44
          W  G     +++     +L++   G++L+R SES+R 
Sbjct: 5  WNDGCIMGFISKERERALLKDQQPGTFLLRFSESSRE 41

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	113
d1opka2	101	Abl tyrosine kinase {Mouse (Mus musculus) [TaxId:	100.0
d1mila_	104	Shc adaptor protein {Human (Homo sapiens) [TaxId:	100.0
d1jwoa_	97	Csk homologous kinase Chk {Human (Homo sapiens) [T	100.0
d1rjaa_	100	Tyrosine-protein kinase 6 (Breast tumor kinase, Br	100.0
d2oq1a1	130	Tyrosine-protein kinase zap-70 {Human (Homo sapien	100.0
d1k9aa2	101	Carboxyl-terminal src kinase (csk) {Human (Homo sa	100.0
d1a81a1	129	Syk tyrosine kinase {Human (Homo sapiens) [TaxId:	99.98
d2shpa2	109	Tyrosine phoshatase shp-2 {Human (Homo sapiens) [T	99.97
d1nrva_	105	Growth factor receptor-bound protein 10, GRB10 {Hu	99.97
d1i3za_	103	Ews/fli1 activated transcript 2, Eat2 {Mouse (Mus	99.97
d1d4ta_	104	The Xlp protein Sap {Human (Homo sapiens) [TaxId:	99.97
d2fcia1	105	Phospholipase C-gamma-1 {Cow (Bos taurus) [TaxId:	99.97
d1lkka_	105	p56-lck tyrosine kinase {Human (Homo sapiens) [Tax	99.97
d2qmsa1	113	Growth factor receptor-bound protein 7 {Human (Hom	99.97
d1blja_	114	P55 Blk protein tyrosine kinase {Mouse (Mus muscul	99.97
d2izva2	112	Suppressor of cytokine signaling 4, SOCS-4 {Human	99.97
d1a81a2	125	Syk tyrosine kinase {Human (Homo sapiens) [TaxId:	99.97
d2oq1a2	124	Tyrosine-protein kinase zap-70 {Human (Homo sapien	99.97
d1r1qa_	97	GRB2-related adaptor protein 2 (MONA, GRID) {Mouse	99.97
d2cs0a1	106	Hematopoietic SH2 domain containing protein HSH2D	99.97
d1o48a_	106	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	99.97
d1fu6a_	111	Phosphatidylinositol 3-kinase, p85-alpha subunit {	99.97
d1g83a2	104	Tyrosine kinase Fyn {Human (Homo sapiens) [TaxId:	99.97
d1qada_	107	Phosphatidylinositol 3-kinase, p85-alpha subunit {	99.97
d1jyra_	96	Growth factor receptor-bound protein 2 (GRB2) {Hum	99.97
d1qcfa2	103	Hemopoetic cell kinase Hck {Human (Homo sapiens) [	99.96
d1luia_	108	Itk/tsk protein tyrosine kinase {Mouse (Mus muscul	99.96
d2shpa3	108	Tyrosine phoshatase shp-2 {Human (Homo sapiens) [T	99.96
d2eyva1	109	Crk proto-oncogen {Human (Homo sapiens) [TaxId: 96	99.96
d2c9wa2	103	Suppressor of cytokine signaling 2, SOCS-2 {Human	99.95
d1rpya_	86	Adaptor protein Aps {Rat (Rattus norvegicus) [TaxI	99.95
d1xa6a2	141	Beta-chimaerin, N-terminal domain {Human (Homo sap	99.91
d1uura3	131	STAT homologue {Dictyostelium discoideum [TaxId: 4	99.72
d1bg1a3	141	STAT3b {Mouse (Mus musculus) [TaxId: 10090]}	99.68
d1bf5a3	142	STAT-1 {Human (Homo sapiens) [TaxId: 9606]}	98.43
d3buxb3	88	Cbl {Human (Homo sapiens) [TaxId: 9606]}	95.96
d1wlha1	101	F-actin cross-linking gelation factor (ABP-120) re	88.59
d2w0pa1	92	Filamin a {Human (Homo sapiens) [TaxId: 9606]}	87.38
d2dj4a1	101	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	86.56
d2diaa1	100	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	85.93
d2di8a1	98	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	85.72
d2d7na1	80	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	85.51
d1qfha1	104	F-actin cross-linking gelation factor (ABP-120) re	84.95
d2d7ma1	102	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	84.66
d2dica1	98	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	83.98
d2diba1	115	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	83.31
d2d7pa1	99	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	82.11
d2di9a1	118	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	82.07
d2bp3a1	92	Filamin a {Human (Homo sapiens) [TaxId: 9606]}	80.71
d1v05a_	96	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	80.57

>d1opka2 d.93.1.1 (A:140-240) Abl tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Abl tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.2e-34  Score=169.46  Aligned_cols=100  Identities=30%  Similarity=0.529  Sum_probs=90.0

Q ss_pred             CCCCCCceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCHHHH
Q psy12508          6 PLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSVPEM   85 (113)
Q Consensus         6 ~l~~~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl~~l   85 (113)
                      +|+.+|||||.|+|++||.+|++.++|+||||.|.+.+|.|+||++.+++++|++|.... +|.|.+.+ ...|+||.+|
T Consensus         1 sLe~~~Wy~g~isR~eAe~lL~~~~~G~FLVR~S~~~~~~~~LSv~~~~~v~H~~I~~~~-~g~~~~~~-~~~F~sl~~L   78 (101)
T d1opka2           1 SLEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTAS-DGKLYVSS-ESRFNTLAEL   78 (101)
T ss_dssp             SGGGSTTEEEECCHHHHHHHGGGCCTTEEEEEECSSSTTCEEEEEEETTEEEEEECEECT-TSCEESST-TSCBSSHHHH
T ss_pred             CcccCcccCCCCCHHHHHHHhcCCCCCeEEEEecCCCCCCEEEEEEcCcceEEEEeEECC-CCCEEeCC-CcccCCHHHH
Confidence            478899999999999999999988999999999998889999999999999999999876 67888876 5789999999


Q ss_pred             HHHHhhCCcccCCCcceEecCccccc
Q psy12508         86 IQHFAENRLPILGAEHMCLLHPMIEQ  111 (113)
Q Consensus        86 v~~y~~~~~~~~~~~~~~L~~pv~~~  111 (113)
                      |+||+.++..    ..+.|+.||+|+
T Consensus        79 I~~y~~~~~~----l~~~L~~P~pr~  100 (101)
T d1opka2          79 VHHHSTVADG----LITTLHYPAPKR  100 (101)
T ss_dssp             HHHHTTCCTT----SSSCCCEECCCC
T ss_pred             HHHHhhCCCC----CceECCCccCCC
Confidence            9999998764    345799999986

>d1mila_ d.93.1.1 (A:) Shc adaptor protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Shc adaptor protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-34  Score=170.54  Aligned_cols=101  Identities=30%  Similarity=0.553  Sum_probs=90.7

Q ss_pred             CCCCCCCceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCHHH
Q psy12508          5 KPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSVPE   84 (113)
Q Consensus         5 ~~l~~~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl~~   84 (113)
                      +.++.+|||||.|+|++||.+|+  ++|+||||.|.+.+|.|+|||+.++.++||+|...  ++.|.+.+  ..|+||.|
T Consensus         2 ~~l~~~pWyhG~i~R~~Ae~lL~--~~G~FLVR~S~~~~g~~vLSv~~~~~v~H~~I~~~--~~~~~~~~--~~F~sl~~   75 (104)
T d1mila_           2 SQLRGEPWFHGKLSRREAEALLQ--LNGDFLVRESTTTPGQYVLTGLQSGQPKHLLLVDP--EGVVRTKD--HRFESVSH   75 (104)
T ss_dssp             CSTTTCTTBCSSCCHHHHHTTCC--STTEEEEEECCSSCSSEEEEEEETTEEEEEEEBCT--TSSEECSS--CEESSHHH
T ss_pred             cccccCCCcCCCCCHHHHHHHHh--cCCcEEEEecCCCCCCEEEEEEEccccceEEEEeC--CCEEEeCC--eeECCHHH
Confidence            57899999999999999999997  79999999999989999999999999999999765  47888875  78999999


Q ss_pred             HHHHHhhCCcccCCC-cceEecCccccc
Q psy12508         85 MIQHFAENRLPILGA-EHMCLLHPMIEQ  111 (113)
Q Consensus        85 lv~~y~~~~~~~~~~-~~~~L~~pv~~~  111 (113)
                      ||+||+.+++++... ..+.|++||+|+
T Consensus        76 LV~~y~~~~~~~~~~~~~~~L~~Pi~R~  103 (104)
T d1mila_          76 LISYHMDNHLPIISAGSELCLQQPVERK  103 (104)
T ss_dssp             HHHHHHHHTCCEEETTEEECCCEECCCC
T ss_pred             HHHHHhhCCCCcccCCcceEeCCCcCCc
Confidence            999999999887543 468899999987

>d1jwoa_ d.93.1.1 (A:) Csk homologous kinase Chk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Csk homologous kinase Chk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-33  Score=164.18  Aligned_cols=97  Identities=25%  Similarity=0.535  Sum_probs=86.6

Q ss_pred             CCCCCceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCHHHHH
Q psy12508          7 LDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSVPEMI   86 (113)
Q Consensus         7 l~~~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl~~lv   86 (113)
                      |+..|||||.|+|++||++|++.++|+||||.|.+.+|.|+|||+.+++++||+|...+  |.|.+.+ ...|+||.+||
T Consensus         1 ls~~PWy~g~isR~eAe~~L~~~~~G~FLVR~S~~~~g~~vLSv~~~~~v~H~~I~~~~--~~~~~~~-~~~F~sl~~LI   77 (97)
T d1jwoa_           1 LSLMPWFHGKISGQEAVQQLQPPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHRD--GHLTIDE-AVFFCNLMDMV   77 (97)
T ss_dssp             CTTCTTEEESCCHHHHHHHTCSCCTTCEEEEECSSSTTCEEEEEEETTEEEEEEEEESS--SEESSTT-SCCBSCHHHHH
T ss_pred             CCcCCccCCCCCHHHHHHHhcCCCCCeEEEEecCCCCccEEEEEEecCceEEEEEEEcC--CcEEecC-CcccCCHHHHH
Confidence            46789999999999999999888999999999999899999999999999999998764  7787776 57999999999


Q ss_pred             HHHhhCCcccCCCcceEecCcccc
Q psy12508         87 QHFAENRLPILGAEHMCLLHPMIE  110 (113)
Q Consensus        87 ~~y~~~~~~~~~~~~~~L~~pv~~  110 (113)
                      +||++++..+    .+.|+.|++|
T Consensus        78 ~~y~~~~~~L----~~~L~~P~~k   97 (97)
T d1jwoa_          78 EHYSKDKGAI----CTKLVRPKRK   97 (97)
T ss_dssp             HHHHHCCTTS----SSCCCCBCCC
T ss_pred             HHHhhCCCCC----CccCCccCcC
Confidence            9999998754    4579999976

>d1rjaa_ d.93.1.1 (A:) Tyrosine-protein kinase 6 (Breast tumor kinase, Brk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine-protein kinase 6 (Breast tumor kinase, Brk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-33  Score=166.13  Aligned_cols=97  Identities=29%  Similarity=0.548  Sum_probs=86.4

Q ss_pred             CCCceeecCCHHHHHHHhcC--CCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCHHHHH
Q psy12508          9 QRNWYHGSVTRHEAENILRN--SNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSVPEMI   86 (113)
Q Consensus         9 ~~~w~~g~i~r~~ae~lL~~--~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl~~lv   86 (113)
                      .+|||||.|+|++||++|..  .++|+||||+|.+.+|.|+|||+.+++++||+|.+.. +|.|.+.+ ...|+||.+||
T Consensus         1 sepWy~g~isR~~Ae~~L~~~~~~~G~FLvR~S~~~~g~y~LSv~~~~~v~H~~I~~~~-~g~~~l~~-~~~F~sl~~LV   78 (100)
T d1rjaa_           1 SEPWFFGCISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRA-GGRLHLNE-AVSFLSLPELV   78 (100)
T ss_dssp             CCCCBCTTCCHHHHHHHHSSTTCSSCCEEEEECSSSSSCEEEEECTTSSCEEEEEEECS-SSCEEEET-TEEESSHHHHH
T ss_pred             CCCCcCCCCCHHHHHHHHhccCCCCCeEEeecCCCCCCCEEEEEEcCCCceEEEEEECC-CCCEEecC-CCccCCHHHHH
Confidence            47999999999999999974  4789999999999899999999999999999999876 67888865 57899999999


Q ss_pred             HHHhhCCcccCCCcceEecCccccc
Q psy12508         87 QHFAENRLPILGAEHMCLLHPMIEQ  111 (113)
Q Consensus        87 ~~y~~~~~~~~~~~~~~L~~pv~~~  111 (113)
                      +||+.+++.    ..+.|+.||+++
T Consensus        79 ~~y~~~~~~----~~~~L~~Pc~~~   99 (100)
T d1rjaa_          79 NYHRAQSLS----HGLRLAAPCRKH   99 (100)
T ss_dssp             HHHHHCCTT----SSSCCCSBCCCC
T ss_pred             HHHhhCCCC----CccCcCeecCCC
Confidence            999999885    456899999885

>d2oq1a1 d.93.1.1 (A:5-134) Tyrosine-protein kinase zap-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine-protein kinase zap-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-32  Score=168.71  Aligned_cols=102  Identities=23%  Similarity=0.369  Sum_probs=90.2

Q ss_pred             CCCCCCCceeecCCHHHHHHHhcC--CCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCH
Q psy12508          5 KPLDQRNWYHGSVTRHEAENILRN--SNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSV   82 (113)
Q Consensus         5 ~~l~~~~w~~g~i~r~~ae~lL~~--~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl   82 (113)
                      |+.+.+|||||.|+|++||++|+.  .++|+||||.|.+.+|.|+|||+.+++++||+|.... +|.|.+.+ ...|+||
T Consensus         1 d~~~~~pWy~g~i~R~~Ae~~L~~~g~~~G~FLVR~S~~~~g~yvLSv~~~~~v~H~~I~~~~-~g~~~l~~-~~~F~sl   78 (130)
T d2oq1a1           1 DPAAHLPFFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQL-NGTYAIAG-GKAHCGP   78 (130)
T ss_dssp             CTTTTCTTBCBSCCHHHHHHHHHHTTCCTTCEEEEECSSSTTCEEEEEEETTEEEEEEEEECT-TSCEEETT-SCCBSSH
T ss_pred             CCccCCCCccCCCCHHHHHHHHHhcCCCCceEEEEecCCCCccEEEEEeeCCceEEEEEEEcC-CCceeccC-CCCcCCH
Confidence            467788999999999999999974  4889999999999999999999999999999998876 67899876 5789999


Q ss_pred             HHHHHHHhhCCcccCCCcceEecCcccccC
Q psy12508         83 PEMIQHFAENRLPILGAEHMCLLHPMIEQL  112 (113)
Q Consensus        83 ~~lv~~y~~~~~~~~~~~~~~L~~pv~~~~  112 (113)
                      .+||+||+.++..+    .+.|+.||+++.
T Consensus        79 ~~Lv~~Y~~~~~gL----~~~L~~P~~r~~  104 (130)
T d2oq1a1          79 AELCEFYSRDPDGL----PCNLRKPCNRPS  104 (130)
T ss_dssp             HHHHHHHHHCCTTS----SSCCCSBCCCCT
T ss_pred             HHHHHHHhhCCCCC----CccCCccCCCCC
Confidence            99999999998654    457999998864

>d1k9aa2 d.93.1.1 (A:77-177) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.9e-33  Score=163.61  Aligned_cols=98  Identities=23%  Similarity=0.490  Sum_probs=87.3

Q ss_pred             CCCCceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCHHHHHH
Q psy12508          8 DQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSVPEMIQ   87 (113)
Q Consensus         8 ~~~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl~~lv~   87 (113)
                      +..|||||.|+|++||++|.+.++|+||||.|.+.+|.|+|||+.+++++||+|...+  +.|.+.+ ...|+||.+||+
T Consensus         2 ~~~PWy~g~isR~~Ae~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~--~~~~~~~-~~~F~sl~~LV~   78 (101)
T d1k9aa2           2 SLMPWFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSCEGKVEHYRIMYHA--SKLSIDE-EVYFENLMQLVE   78 (101)
T ss_dssp             ESCTTBCTTCCHHHHHHHTCSCCTTEEEEEECSSSTTSEEEEEECSSSEEEEEEEEET--TEEESSS-SSCBSSHHHHHH
T ss_pred             CcCCccCCCCCHHHHHHHHcCCCCCCEEEeccCCCCCCEEEEEEeCCccEEEEEEEcC--CCceecC-CcccCCHHHHHH
Confidence            4679999999999999999888899999999998889999999999999999999875  6777766 578999999999


Q ss_pred             HHhhCCcccCCCcceEecCcccccC
Q psy12508         88 HFAENRLPILGAEHMCLLHPMIEQL  112 (113)
Q Consensus        88 ~y~~~~~~~~~~~~~~L~~pv~~~~  112 (113)
                      ||++++..+    .+.|+.|++++.
T Consensus        79 ~y~~~~~gl----~~~L~~P~~~~~   99 (101)
T d1k9aa2          79 HYTTDADGL----CTRLIKPKVMEG   99 (101)
T ss_dssp             HHHHCCTTS----SSCCCEECCCTT
T ss_pred             HHhhCCCCC----ceeCCccccCCC
Confidence            999998754    457999998864

>d1a81a1 d.93.1.1 (A:9-137) Syk tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Syk tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=2.1e-32  Score=167.58  Aligned_cols=100  Identities=22%  Similarity=0.393  Sum_probs=87.1

Q ss_pred             CCCCCCceeecCCHHHHHHHhcC--CCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCHH
Q psy12508          6 PLDQRNWYHGSVTRHEAENILRN--SNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSVP   83 (113)
Q Consensus         6 ~l~~~~w~~g~i~r~~ae~lL~~--~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl~   83 (113)
                      +.+.+|||||.|+|++||++|.+  .++|+||||.|.+.+|.|+|||+.+++++||+|.+.. +|.|.+.+ ...|+||.
T Consensus         1 ~~~~~PWyhg~isR~~Ae~lL~~~g~~dG~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~-~g~~~i~~-~~~F~sl~   78 (129)
T d1a81a1           1 SANHLPFFFGNITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRKAHHYTIEREL-NGTYAIAG-GRTHASPA   78 (129)
T ss_dssp             CTTSSTTBCSSCCHHHHHHHHHHTTCCTTEEEEEECSSSTTCEEEEEEETTEEEEEEEEECT-TSCEEETT-SCCBSSHH
T ss_pred             CCCCCCcccCCCCHHHHHHHHHhcCCCCccEEEEccCCCCcceEEEeeecccceEEEEEEcC-CCCeeecC-CcccCCHH
Confidence            35788999999999999999964  3889999999999899999999999999999999876 67888876 47899999


Q ss_pred             HHHHHHhhCCcccCCCcceEecCccccc
Q psy12508         84 EMIQHFAENRLPILGAEHMCLLHPMIEQ  111 (113)
Q Consensus        84 ~lv~~y~~~~~~~~~~~~~~L~~pv~~~  111 (113)
                      +||+||+.++..+    .+.|+.||+++
T Consensus        79 eLV~~Y~~~~~gl----~~~L~~P~~~~  102 (129)
T d1a81a1          79 DLCHYHSQESDGL----VCLLKKPFNRP  102 (129)
T ss_dssp             HHHHHHTTCCTTS----SSCCCEECCCC
T ss_pred             HHHHHHhhCCCCC----cccCCCCCCCC
Confidence            9999999987644    44788888764

>d2shpa2 d.93.1.1 (A:2-110) Tyrosine phoshatase shp-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine phoshatase shp-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.6e-32  Score=161.68  Aligned_cols=102  Identities=29%  Similarity=0.443  Sum_probs=88.4

Q ss_pred             CCCCceeecCCHHHHHHHhcC-CCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCHHHHH
Q psy12508          8 DQRNWYHGSVTRHEAENILRN-SNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSVPEMI   86 (113)
Q Consensus         8 ~~~~w~~g~i~r~~ae~lL~~-~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl~~lv   86 (113)
                      ++++||||.|+|.+||++|.+ +.+|+||||+|.+.+|.|+|||+.+++++|++|...+  +.|.+.+ ...|+||.+||
T Consensus         1 ~~~~Wy~g~isR~~Ae~lL~~~~~~G~FLvR~S~~~~g~y~LSv~~~~~v~H~~I~~~~--~~~~~~~-~~~F~sl~~LV   77 (109)
T d2shpa2           1 KSRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDLTLSVRRNGAVTHIKIQNTG--DYYDLYG-GEKFATLAELV   77 (109)
T ss_dssp             CCSTTBCSSCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEEEETTEEEEEEEECSS--SCEEETT-SCEESSHHHHH
T ss_pred             CCCccccCCCCHHHHHHHHhhCCCCCeEEEEecCCCCCCEEEEEEeCCcEEEEEEEEcC--CeEEEcC-CcccCCHHHHH
Confidence            368999999999999999965 5689999999999899999999999999999998765  6777766 47899999999


Q ss_pred             HHHhhCCcccCCCc--ceEecCcccccC
Q psy12508         87 QHFAENRLPILGAE--HMCLLHPMIEQL  112 (113)
Q Consensus        87 ~~y~~~~~~~~~~~--~~~L~~pv~~~~  112 (113)
                      +||+.+++.+....  .+.|+.|++++.
T Consensus        78 ~~y~~~~~~~~~~~~~~~~L~~P~~~~~  105 (109)
T d2shpa2          78 QYYMEHHGQLKEKNGDVIELKYPLNCAD  105 (109)
T ss_dssp             HHHHTCTTCSBSSSSCBCCCCEECCCCC
T ss_pred             HHHHHCCCCcccCCCCeeeccccCCCCC
Confidence            99999988776543  478999998753

>d1nrva_ d.93.1.1 (A:) Growth factor receptor-bound protein 10, GRB10 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Growth factor receptor-bound protein 10, GRB10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.5e-31  Score=158.85  Aligned_cols=100  Identities=24%  Similarity=0.462  Sum_probs=83.4

Q ss_pred             CCCCCceeecCCHHHHHHHhcC--CCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCC--cEEECcCCCCCCCH
Q psy12508          7 LDQRNWYHGSVTRHEAENILRN--SNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTG--KFILGQFSAPFDSV   82 (113)
Q Consensus         7 l~~~~w~~g~i~r~~ae~lL~~--~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~--~~~~~~~~~~F~sl   82 (113)
                      .+.+|||||.|+|++||++|.+  .++|+||||.|.+.+|.|+|||+.+++++|++|....+++  .|.+.+....|+||
T Consensus         2 h~~~~Wyhg~isR~~Ae~lL~~~g~~dG~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~~~~~~~~~~~~~~F~sl   81 (105)
T d1nrva_           2 HRTQHWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPCEDDGQTFFSLDDGNTKFSDL   81 (105)
T ss_dssp             CTTSTTBCTTCCHHHHHHHHHHTTCCTTEEEEEECSSCTTCEEEEEEETTEEEEEEEEEC-----CCEESSTTSSCBSSH
T ss_pred             CccCcccCCCCCHHHHHHHHhhcCCCCceEEEEeCCCCCCCEEEEEEECCceeEEEEEEecCCCeEEEEECCCCcccCCH
Confidence            3678999999999999999964  4789999999999999999999999999999998865222  46666655789999


Q ss_pred             HHHHHHHhhCCcccCCCcceEecCcccc
Q psy12508         83 PEMIQHFAENRLPILGAEHMCLLHPMIE  110 (113)
Q Consensus        83 ~~lv~~y~~~~~~~~~~~~~~L~~pv~~  110 (113)
                      .+||+||++++..+    .+.|+.||+|
T Consensus        82 ~~LV~~y~~~~~~L----~~~L~~Pc~r  105 (105)
T d1nrva_          82 IQLVDFYQLNKGVL----PCKLKHHCIR  105 (105)
T ss_dssp             HHHHHHHTTCCTTS----SSCCCEECCC
T ss_pred             HHHHHHhccCcCCC----CccCCcCCCC
Confidence            99999999987654    3478999876

>d1i3za_ d.93.1.1 (A:) Ews/fli1 activated transcript 2, Eat2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Ews/fli1 activated transcript 2, Eat2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=9.6e-32  Score=159.19  Aligned_cols=97  Identities=22%  Similarity=0.435  Sum_probs=82.7

Q ss_pred             CCCceeecCCHHHHHHHhcC-CCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCC----CCCCCHH
Q psy12508          9 QRNWYHGSVTRHEAENILRN-SNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFS----APFDSVP   83 (113)
Q Consensus         9 ~~~w~~g~i~r~~ae~lL~~-~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~----~~F~sl~   83 (113)
                      +.|||||.|+|++||.+|.. +++|+||||+|.+.+|.|+||++.++.++||+|.+.. +|.|.+....    ..|+||.
T Consensus         2 d~PWy~g~isR~~AE~lL~~~~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~-~g~~~~~~~~~~~~~~F~sl~   80 (103)
T d1i3za_           2 DLPYYHGCLTKRECEALLLKGGVDGNFLIRDSESVPGALCLCVSFKKLVYSYRIFREK-HGYYRIETDAHTPRTIFPNLQ   80 (103)
T ss_dssp             CCTTEESSCCHHHHHHHHHTTCSTTEEEEEECSSSTTCEEEEEECSSSEEEEEEEECT-TSCEEECBCTTSCCCEESSSH
T ss_pred             CCCcccCCCCHHHHHHHHHhCCCCCeEEEEecCCCCCCEEEEEEeCCeEEEEEeEEcC-CCcEEEeccCCcCccccCCHH
Confidence            57999999999999998854 6889999999999999999999999999999998776 6788876522    4599999


Q ss_pred             HHHHHHhhCCcccCCCcceEecCcccc
Q psy12508         84 EMIQHFAENRLPILGAEHMCLLHPMIE  110 (113)
Q Consensus        84 ~lv~~y~~~~~~~~~~~~~~L~~pv~~  110 (113)
                      +||+||++++..+    .+.|+.||.|
T Consensus        81 ~LV~~y~~~~~gl----~~~L~~P~~R  103 (103)
T d1i3za_          81 ELVSKYGKPGQGL----VVHLSNPIMR  103 (103)
T ss_dssp             HHHHHTTSSSSSS----SSCCCEECC-
T ss_pred             HHHHHhhhCCCCC----eEeCCccccC
Confidence            9999999887543    4578999875

>d1d4ta_ d.93.1.1 (A:) The Xlp protein Sap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: The Xlp protein Sap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.8e-31  Score=158.23  Aligned_cols=99  Identities=24%  Similarity=0.374  Sum_probs=85.2

Q ss_pred             CCCCCceeecCCHHHHHHHhcC-CCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECc----CCCCCCC
Q psy12508          7 LDQRNWYHGSVTRHEAENILRN-SNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQ----FSAPFDS   81 (113)
Q Consensus         7 l~~~~w~~g~i~r~~ae~lL~~-~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~----~~~~F~s   81 (113)
                      ++.+|||||.|+|++||++|.+ +.+|+||||.|.+.+|.|+||++.++.++|++|.+.+ +|.|.+..    ....|+|
T Consensus         1 le~~pwyhG~isR~eAe~lL~~~~~~G~FLVR~S~~~~g~~~Lsv~~~~~v~H~~I~~~~-~~~~~~~~~~~~~~~~F~s   79 (104)
T d1d4ta_           1 MDAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTE-TGSWSAETAPGVHKRYFRK   79 (104)
T ss_dssp             CTTCTTBCCSCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEEEETTEEEEEEEEECT-TSCEEECBCTTSCCCCBSS
T ss_pred             CCcCCccccCCCHHHHHHHHhhCCCCCeEEEEecCCCCCCEEEEEecCCCceEEEEEEcC-CCcEEEeeccCCCCcccCC
Confidence            5789999999999999999965 5689999999999999999999999999999999876 57776543    2367999


Q ss_pred             HHHHHHHHhhCCcccCCCcceEecCcccc
Q psy12508         82 VPEMIQHFAENRLPILGAEHMCLLHPMIE  110 (113)
Q Consensus        82 l~~lv~~y~~~~~~~~~~~~~~L~~pv~~  110 (113)
                      |.+||+||++++..    ..+.|+.||+|
T Consensus        80 l~~Li~~y~~~~~g----l~~~L~~P~~r  104 (104)
T d1d4ta_          80 IKNLISAFQKPDQG----IVIPLQYPVEK  104 (104)
T ss_dssp             HHHHHHHHTSSSSS----SSSCCCEECCC
T ss_pred             HHHHHHHHhhCCCC----CcEeCCccccC
Confidence            99999999988764    34579999986

>d2fcia1 d.93.1.1 (A:1-105) Phospholipase C-gamma-1 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Phospholipase C-gamma-1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=3e-32  Score=161.76  Aligned_cols=101  Identities=29%  Similarity=0.588  Sum_probs=86.6

Q ss_pred             CCCCCCCCCceeecCCHHHHHHHhcCC-CCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCC
Q psy12508          3 NPKPLDQRNWYHGSVTRHEAENILRNS-NEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDS   81 (113)
Q Consensus         3 ~~~~l~~~~w~~g~i~r~~ae~lL~~~-~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~s   81 (113)
                      .+..++.+|||||.|+|++||++|.+. .+|+||||.|. .++.|+|||+.+++++||+|...+  +.|.+++  ..|+|
T Consensus         2 sp~~he~~~Wy~g~i~R~eAe~lL~~~~~~G~FLVR~S~-~~~~yvLSv~~~~~v~H~~I~~~~--~~~~~~~--~~F~s   76 (105)
T d2fcia1           2 SPGIHESKEWYHASLTRAQAEHMLMRVPRDGAFLVRKRN-EPNSYAISFRAEGKIKHCRVQQEG--QTVMLGN--SEFDS   76 (105)
T ss_dssp             CSCTTSSSCCCCSSSCSHHHHHHHHHSSSSCCEEEEECS-STTCEEEEEEETTEECCCEEBCCS--SCEECSS--SEEST
T ss_pred             CCcccccCCCccCCCCHHHHHHHHHhCCCCCeEEEEecC-CCCCEEEEEEeccccEEEEEEecC--CeEecCC--cccCC
Confidence            456788999999999999999999764 58999999995 578999999999999999998643  6677665  68999


Q ss_pred             HHHHHHHHhhCCcccCCCcceEecCcccccC
Q psy12508         82 VPEMIQHFAENRLPILGAEHMCLLHPMIEQL  112 (113)
Q Consensus        82 l~~lv~~y~~~~~~~~~~~~~~L~~pv~~~~  112 (113)
                      |.+||+||+++++.    ..+.|+.||+++.
T Consensus        77 l~~LV~~y~~~~~~----~~~~L~~P~~~~~  103 (105)
T d2fcia1          77 LVDLISYYEKHPLY----RKMKLRYPINEEN  103 (105)
T ss_dssp             THHHHHHHHHSCCS----TTCSSCCCCCCTT
T ss_pred             HHHHHHHHhhCCCC----CccCCCCCCCCCC
Confidence            99999999999885    4567999999864

>d1lkka_ d.93.1.1 (A:) p56-lck tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: p56-lck tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2e-31  Score=158.33  Aligned_cols=97  Identities=27%  Similarity=0.496  Sum_probs=83.3

Q ss_pred             CCCCCceeecCCHHHHHHHhcC--CCCceEEEEecCCCCCcEEEEEEeCC-----eeEEEEEEecCCCCcEEECcCCCCC
Q psy12508          7 LDQRNWYHGSVTRHEAENILRN--SNEGSYLVRNSESNRPDYSLSLKSAR-----GFMHMKIQRDPDTGKFILGQFSAPF   79 (113)
Q Consensus         7 l~~~~w~~g~i~r~~ae~lL~~--~~~G~FLvR~s~~~~~~~~Lsv~~~~-----~v~h~~I~~~~~~~~~~~~~~~~~F   79 (113)
                      ++.+|||||.|+|++||++|..  .++|+||||.|.+.+|.|+||++..+     .|+|++|...+ +|.|.+.+ ...|
T Consensus         1 le~~pWy~g~isR~eAe~~L~~~~~~~GtFLVR~S~~~~g~~~lsv~~~~~~~~~~v~h~~i~~~~-~~~~~~~~-~~~F   78 (105)
T d1lkka_           1 LEPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLD-NGGFYISP-RITF   78 (105)
T ss_dssp             CCCCTTBCTTCCHHHHHHHHTSTTCCTTCEEEEECSSSTTCEEEEEEEEETTTEEEEEEEEEEECT-TSCEESST-TSCB
T ss_pred             CccCCccCCCCCHHHHHHHHHhcCCCCCcEEEEccCCCCCCEEEEEEEcccCCCccEEEEEEEEcC-CCCEEecC-Cccc
Confidence            5789999999999999998843  58899999999998999999998643     38999999876 67888876 5789


Q ss_pred             CCHHHHHHHHhhCCcccCCCcceEecCccc
Q psy12508         80 DSVPEMIQHFAENRLPILGAEHMCLLHPMI  109 (113)
Q Consensus        80 ~sl~~lv~~y~~~~~~~~~~~~~~L~~pv~  109 (113)
                      +||.+||+||++++..+    .+.|+.||+
T Consensus        79 ~sl~~LV~~y~~~~~gL----~~~L~~Pcp  104 (105)
T d1lkka_          79 PGLHELVRHYTNASDGL----CTRLSRPCQ  104 (105)
T ss_dssp             SSHHHHHHHHHHCCTTS----SSCCCSBCC
T ss_pred             CCHHHHHHHHhhCCCCC----CccCCCcCC
Confidence            99999999999998754    457999986

>d2qmsa1 d.93.1.1 (A:420-532) Growth factor receptor-bound protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Growth factor receptor-bound protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4e-31  Score=158.82  Aligned_cols=104  Identities=23%  Similarity=0.397  Sum_probs=87.2

Q ss_pred             CCCCCCceeecCCHHHHHHHhcC--CCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCc--EEECcCCCCCCC
Q psy12508          6 PLDQRNWYHGSVTRHEAENILRN--SNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGK--FILGQFSAPFDS   81 (113)
Q Consensus         6 ~l~~~~w~~g~i~r~~ae~lL~~--~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~--~~~~~~~~~F~s   81 (113)
                      .+..+|||||.|+|++||++|.+  .++|+||||.|.+.+|.|+||++.+++++|++|...++++.  |.+.+....|+|
T Consensus         6 ~h~~~~Wy~g~isR~~Ae~lL~~~g~~dG~FLvR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~~~~~~~~~~~~~~F~s   85 (113)
T d2qmsa1           6 IHRTQLWFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLILPSEEEGRLYFSMDDGQTRFTD   85 (113)
T ss_dssp             STTCCTTEEEEBCHHHHHHHHHHTTCCTTEEEEEECSSCTTCEEEEEEETTEEEEEEEEEEESSSCEEEESSTTSSCBSS
T ss_pred             hhcCCCccCCCCCHHHHHHHHhccCCCCccEEEEeccCCCCCEEEEEEeCCeEEEEEEEEeCCCCeEEEEecCCCcccCC
Confidence            35678999999999999999963  58999999999998999999999999999999987543343  455554467999


Q ss_pred             HHHHHHHHhhCCcccCCCcceEecCcccccCC
Q psy12508         82 VPEMIQHFAENRLPILGAEHMCLLHPMIEQLL  113 (113)
Q Consensus        82 l~~lv~~y~~~~~~~~~~~~~~L~~pv~~~~~  113 (113)
                      |.+||+||++++..+    .+.|+.||+|-+|
T Consensus        86 l~~LI~~y~~~~~~L----~~~L~~pc~r~~~  113 (113)
T d2qmsa1          86 LLQLVEFHQLNRGIL----PCLLRHCCTRVAL  113 (113)
T ss_dssp             HHHHHHHHTTCCTTS----SSCCCEECCSSCC
T ss_pred             HHHHHHHhccCCCCC----ccccCCCCcCcCC
Confidence            999999999998754    4589999998664

>d1blja_ d.93.1.1 (A:) P55 Blk protein tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: P55 Blk protein tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.1e-31  Score=161.59  Aligned_cols=105  Identities=27%  Similarity=0.500  Sum_probs=90.0

Q ss_pred             CCCCCCCCCCCceeecCCHHHHHHHhcC--CCCceEEEEecCCCCCcEEEEEEeC----CeeEEEEEEecCCCCcEEECc
Q psy12508          1 MANPKPLDQRNWYHGSVTRHEAENILRN--SNEGSYLVRNSESNRPDYSLSLKSA----RGFMHMKIQRDPDTGKFILGQ   74 (113)
Q Consensus         1 ~~~~~~l~~~~w~~g~i~r~~ae~lL~~--~~~G~FLvR~s~~~~~~~~Lsv~~~----~~v~h~~I~~~~~~~~~~~~~   74 (113)
                      .|+.++++.+|||||.|+|.+||++|..  .++|+||||.|.+.++.|+||++..    +.|+|++|...+ +|.|.+..
T Consensus         3 vap~~~l~~e~Wy~g~isR~eAe~~L~~~~~~~G~FLVR~S~~~~g~~~Lsv~~~~~~~~~v~H~~i~~~~-~g~~~l~~   81 (114)
T d1blja_           3 VAPVETLEVEKWFFRTISRKDAERQLLAPMNKAGSFLIRESESNKGAFSLSVKDITTQGEVVKHYKIRSLD-NGGYYISP   81 (114)
T ss_dssp             CCSSCCSCCSSSBCCSCCHHHHHHHHSSTTCCTTCEEBCBCTTCSSCEEEEECBCCTTTCBCCCEEEEEET-TTEEEEET
T ss_pred             cCCcCccccCCCcCCCCCHHHHHHHHHhcCCCCceEEEeccCCCCCCeEEEEEeeccCCCEEEEEEEEEcC-CCCEEecC
Confidence            3778999999999999999999998853  5899999999998899999999853    458999999876 67888865


Q ss_pred             CCCCCCCHHHHHHHHhhCCcccCCCcceEecCccccc
Q psy12508         75 FSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIEQ  111 (113)
Q Consensus        75 ~~~~F~sl~~lv~~y~~~~~~~~~~~~~~L~~pv~~~  111 (113)
                       ...|+||.+||+||++++..+    .+.|+.||++-
T Consensus        82 -~~~F~sl~eLV~~y~~~~~gL----~~~L~~PC~~~  113 (114)
T d1blja_          82 -RITFPTLQALVQHYSKKGDGL----CQKLTLPCVNL  113 (114)
T ss_dssp             -TEEESSHHHHHHHHHHCCSSS----SSCCCCCSCCC
T ss_pred             -CceECCHHHHHHHHhhCCCCC----CccCCccCcCc
Confidence             467999999999999998754    44899998763

>d2izva2 d.93.1.1 (A:274-385) Suppressor of cytokine signaling 4, SOCS-4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Suppressor of cytokine signaling 4, SOCS-4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.1e-32  Score=162.24  Aligned_cols=103  Identities=18%  Similarity=0.345  Sum_probs=88.8

Q ss_pred             CCCCCCCceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCC---CCCCC
Q psy12508          5 KPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFS---APFDS   81 (113)
Q Consensus         5 ~~l~~~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~---~~F~s   81 (113)
                      ..++++|||||.|+|++||++|++.++|+||||.|.+.++.|+||++.++.++|++|...+  |.|.+....   ..|+|
T Consensus         6 ~~l~~~~Wy~g~isR~~Ae~lL~~~~~GtFLVR~S~~~~~~~~LSv~~~~~v~H~~I~~~~--~~~~l~~~~~~~~~F~s   83 (112)
T d2izva2           6 LQINNNPCYWGVMDKYAAEALLEGKPEGTFLLRDSAQEDYLFSVSFRRYSRSLHARIEQWN--HNFSFDAHDPCVFHSPD   83 (112)
T ss_dssp             HHHHHCTTEEEECCHHHHHHHHTTCCTTEEEEEECSSTTCSEEEEEEETTEEEEEECEEET--TEEESCTTCTTSCCBSS
T ss_pred             HHhccCCCcCCCCCHHHHHHHHccCCCCcEEEeecCCCCCCeEEEEEecCCceEEEEEEeC--CeEEEeecccCcccCCC
Confidence            3567899999999999999999888899999999998889999999999999999999875  788886532   36999


Q ss_pred             HHHHHHHHhhCCcccCCCcceEecCccccc
Q psy12508         82 VPEMIQHFAENRLPILGAEHMCLLHPMIEQ  111 (113)
Q Consensus        82 l~~lv~~y~~~~~~~~~~~~~~L~~pv~~~  111 (113)
                      |.+||+||+++++.+..  ...|+.||+|+
T Consensus        84 l~~LV~~Y~~~~~~~~~--~~llt~P~~r~  111 (112)
T d2izva2          84 ITGLLEHYKDPSACMFF--EPLLSTPLIRT  111 (112)
T ss_dssp             HHHHHHHTCCGGGCCTT--SCCCCEECCCC
T ss_pred             HHHHHHHHhcccccccC--ccccCCCCCCC
Confidence            99999999988775433  35799999885

>d1a81a2 d.93.1.1 (A:138-262) Syk tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Syk tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=7.1e-31  Score=160.15  Aligned_cols=98  Identities=24%  Similarity=0.522  Sum_probs=84.7

Q ss_pred             CCCCCCceeecCCHHHHHHHhcC--CCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCHH
Q psy12508          6 PLDQRNWYHGSVTRHEAENILRN--SNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSVP   83 (113)
Q Consensus         6 ~l~~~~w~~g~i~r~~ae~lL~~--~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl~   83 (113)
                      ..+.+|||||.|+|++||++|..  .++|+||||.|.. ++.|+|||+.+++++||+|...+ +|.|++.+ ...|+||.
T Consensus        25 ~he~~pWyhg~isR~~Ae~lL~~~g~~~G~FLVR~S~~-~~~yvLSv~~~~~v~H~~I~~~~-~g~~~~~~-~~~F~sL~  101 (125)
T d1a81a2          25 AHEKMPWFHGKISREESEQIVLIGSKTNGKFLIRARDN-NGSYALCLLHEGKVLHYRIDKDK-TGKLSIPE-GKKFDTLW  101 (125)
T ss_dssp             SGGGSTTEEEECCHHHHHHHHHSSCCCTTCEEEEECSS-SSCEEEEEEETTEEEEEEEEECT-TSCEECTT-SCCBSCHH
T ss_pred             ccccCCccCCCCCHHHHHHHHHhcCCCCceEEEEecCC-CCCEEEEeeccccceeEeeeEcC-CCcEeccC-CcccCCHH
Confidence            45778999999999999998853  5889999999865 68899999999999999999876 67888876 57899999


Q ss_pred             HHHHHHhhCCcccCCCcceEecCcccc
Q psy12508         84 EMIQHFAENRLPILGAEHMCLLHPMIE  110 (113)
Q Consensus        84 ~lv~~y~~~~~~~~~~~~~~L~~pv~~  110 (113)
                      +||+||+.++..    ..+.|+.||+|
T Consensus       102 ~LI~~y~~~~~g----L~~~L~~P~~k  124 (125)
T d1a81a2         102 QLVEHYSYKADG----LLRVLTVPCQK  124 (125)
T ss_dssp             HHHHHHTTCCTT----SSSCCCCBCCC
T ss_pred             HHHHHHhhCCCC----CCccCCeeCCC
Confidence            999999988754    34579999986

>d2oq1a2 d.93.1.1 (A:135-258) Tyrosine-protein kinase zap-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine-protein kinase zap-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.1e-31  Score=160.19  Aligned_cols=97  Identities=27%  Similarity=0.505  Sum_probs=84.3

Q ss_pred             CCCCCCceeecCCHHHHHHHhcC--CCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCHH
Q psy12508          6 PLDQRNWYHGSVTRHEAENILRN--SNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSVP   83 (113)
Q Consensus         6 ~l~~~~w~~g~i~r~~ae~lL~~--~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl~   83 (113)
                      ..+.+|||||.|+|++||++|.+  .++|+||||.|.+ ++.|+|||+.+++++||+|.... +|.|.+.+ ...|+||.
T Consensus        25 ~~e~~pWyhg~isR~eAe~lL~~~~~~dGtFLVR~S~~-~g~yvLSv~~~~~v~H~~I~~~~-~g~~~l~~-~~~F~sl~  101 (124)
T d2oq1a2          25 AHERMPWYHSSLTREEAERKLYSGAQTDGKFLLRPRKE-QGTYALSLIYGKTVYHYLISQDK-AGKYCIPE-GTKFDTLW  101 (124)
T ss_dssp             GGGGSTTBCSSCCHHHHHHHHHSSCCCTTEEEEEECSS-TTEEEEEEEETTEEEEEEEEECT-TSCEESTT-SCCBSSHH
T ss_pred             cccCCCCccCCCCHHHHHHHHhhcCCCCceEEeEecCC-CCCEEEEeecCCceEEEEEEECC-CCCEEeCC-CcccCCHH
Confidence            34678999999999999999975  4789999999976 68999999999999999999876 67888876 57899999


Q ss_pred             HHHHHHhhCCcccCCCcceEecCccc
Q psy12508         84 EMIQHFAENRLPILGAEHMCLLHPMI  109 (113)
Q Consensus        84 ~lv~~y~~~~~~~~~~~~~~L~~pv~  109 (113)
                      +||+||+.++..+    .+.|+.||+
T Consensus       102 ~LV~~y~~~~~gL----~~~L~~PcP  123 (124)
T d2oq1a2         102 QLVEYLKLKADGL----IYCLKEACP  123 (124)
T ss_dssp             HHHHHHHHCCTTS----SSCCCSBCC
T ss_pred             HHHHHHhhCCCCC----cccCCCcCc
Confidence            9999999987654    457899987

>d1r1qa_ d.93.1.1 (A:) GRB2-related adaptor protein 2 (MONA, GRID) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: GRB2-related adaptor protein 2 (MONA, GRID)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=5.5e-31  Score=154.33  Aligned_cols=87  Identities=26%  Similarity=0.614  Sum_probs=80.3

Q ss_pred             CCCCCCceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCHHHH
Q psy12508          6 PLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSVPEM   85 (113)
Q Consensus         6 ~l~~~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl~~l   85 (113)
                      +++.++||||.|+|++||++|...++|+||||.|++.+|.|+|||+.+++++|++|.+.+ +|.|.+.+  ..|+||.+|
T Consensus         2 d~~~~~Wy~g~isR~~Ae~lL~~~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~-~g~~~~~~--~~F~sl~~L   78 (97)
T d1r1qa_           2 DIEFPEWFHEGLSRHQAENLLMGKDIGFFIIRASQSSPGDFSISVRHEDDVQHFKVMRDT-KGNYFLWT--EKFPSLNKL   78 (97)
T ss_dssp             CCSCCTTBCTTCCHHHHHHHHHTSCTTCEEEEECSSSTTCEEEEEECSSSEEEEECEECT-TCCEESSS--CCBSSHHHH
T ss_pred             CcccCCccCCCCCHHHHHHHHhcCCCCCEEEeecCCCCCCEEEEEEecCCeEEEEEEEcC-CCeEEeCC--CCcCCHHHH
Confidence            678899999999999999999888999999999999899999999999999999999987 67787765  689999999


Q ss_pred             HHHHhhCCcc
Q psy12508         86 IQHFAENRLP   95 (113)
Q Consensus        86 v~~y~~~~~~   95 (113)
                      |+||+++++.
T Consensus        79 V~~y~~~~l~   88 (97)
T d1r1qa_          79 VDYYRTTSIS   88 (97)
T ss_dssp             HHHTTTSCSC
T ss_pred             HHHHccCCcC
Confidence            9999999874

>d2cs0a1 d.93.1.1 (A:8-113) Hematopoietic SH2 domain containing protein HSH2D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Hematopoietic SH2 domain containing protein HSH2D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.6e-30  Score=154.61  Aligned_cols=101  Identities=24%  Similarity=0.453  Sum_probs=87.6

Q ss_pred             CCCCCCceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCHHHH
Q psy12508          6 PLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSVPEM   85 (113)
Q Consensus         6 ~l~~~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl~~l   85 (113)
                      +-...|||||.|+|++|+++|+++++|+||||.|...++ |+|+++.++.++|++|...+ +|.|.+.+....|+||.+|
T Consensus         5 ~~~~~pWy~g~isR~eAe~lL~~~~~G~FLvR~S~~~~~-y~Lsv~~~~~~~h~~I~~~~-~g~~~~~~~~~~F~sl~eL   82 (106)
T d2cs0a1           5 QDGVPEWFHGAISREDAENLLESQPLGSFLIRVSHSHVG-YTLSYKAQSSCCHFMVKLLD-DGTFMIPGEKVAHTSLDAL   82 (106)
T ss_dssp             SSSCCSSBCSSCCHHHHHHHHHTSCTTCEEEEECSSSSS-EEEEECCSSSCEEEEEEECT-TSCEECTTCSCCBSSHHHH
T ss_pred             CCCCCCCccCCCCHHHHHHHHcCCCCCcEEEEecCCCCC-EEEEEEecCCceeEEEEEcC-CCCEEEecCCccCCCHHHH
Confidence            344579999999999999999988999999999987655 99999999999999999887 6778877655689999999


Q ss_pred             HHHHhhCCcccCCCcceEecCccccc
Q psy12508         86 IQHFAENRLPILGAEHMCLLHPMIEQ  111 (113)
Q Consensus        86 v~~y~~~~~~~~~~~~~~L~~pv~~~  111 (113)
                      |+||+++++.   ..+..|+.||+++
T Consensus        83 V~~y~~~~~~---~~~~~L~~P~~~~  105 (106)
T d2cs0a1          83 VTFHQQKPIE---PRRELLTQPCRQK  105 (106)
T ss_dssp             HHHHTTSCCS---SCCCCCCSBCCCS
T ss_pred             HHHHHHCCCC---CccCcccCcCCCC
Confidence            9999999774   2456799999986

>d1o48a_ d.93.1.1 (A:) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=7.5e-31  Score=156.04  Aligned_cols=98  Identities=27%  Similarity=0.523  Sum_probs=84.0

Q ss_pred             CCCCCCceeecCCHHHHHHHhcC--CCCceEEEEecCCCCCcEEEEEEeCC-----eeEEEEEEecCCCCcEEECcCCCC
Q psy12508          6 PLDQRNWYHGSVTRHEAENILRN--SNEGSYLVRNSESNRPDYSLSLKSAR-----GFMHMKIQRDPDTGKFILGQFSAP   78 (113)
Q Consensus         6 ~l~~~~w~~g~i~r~~ae~lL~~--~~~G~FLvR~s~~~~~~~~Lsv~~~~-----~v~h~~I~~~~~~~~~~~~~~~~~   78 (113)
                      +++.+|||||.|+|++||++|.+  .++|+||||.|.+.+|.|+||++..+     .|+|++|...+ +|.|.+.+ ...
T Consensus         1 ~l~~~~Wy~g~i~R~eAe~lL~~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~~~~~~i~h~~i~~~~-~g~~~~~~-~~~   78 (106)
T d1o48a_           1 SIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLD-SGGFYITS-RTQ   78 (106)
T ss_dssp             CGGGSTTEEESCCHHHHHHHHCCTTCCTTCEEEEECSSSTTCEEEEEEEEETTTEEEEEEEEEEECT-TSCEESST-TSE
T ss_pred             CcccCCccCCCCCHHHHHHHHHhcCCCCCcEEEEcccCCCCCEEEEEEecccCcccceEEEEEEEec-CCCEEEcC-Cee
Confidence            46789999999999999999965  47999999999998999999998643     48899998876 68888876 578


Q ss_pred             CCCHHHHHHHHhhCCcccCCCcceEecCccc
Q psy12508         79 FDSVPEMIQHFAENRLPILGAEHMCLLHPMI  109 (113)
Q Consensus        79 F~sl~~lv~~y~~~~~~~~~~~~~~L~~pv~  109 (113)
                      |+||.+||+||++++..+    .+.|+.|+|
T Consensus        79 F~sl~eLV~~y~~~~~gL----~~~L~~pcP  105 (106)
T d1o48a_          79 FNSLQQLVAYYSKHADGL----CHRLTTVCP  105 (106)
T ss_dssp             ESSHHHHHHHHTTCCTTS----SSCCCSBCC
T ss_pred             ECCHHHHHHHHhhCCCCC----CccCCCcCC
Confidence            999999999999998754    447999986

>d1fu6a_ d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-alpha subunit {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Phosphatidylinositol 3-kinase, p85-alpha subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=5e-32  Score=162.36  Aligned_cols=107  Identities=30%  Similarity=0.591  Sum_probs=93.5

Q ss_pred             CCCCCCCCCCCceeecCCHHHHHHHhcCCCCceEEEEecCCC-CCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCC
Q psy12508          1 MANPKPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESN-RPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPF   79 (113)
Q Consensus         1 ~~~~~~l~~~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~-~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F   79 (113)
                      |++..+++++|||||.|+|++||++|.+.++|+||||.|... ++.|+|+++.++.+.|++|...+  +.|.+.+ ...|
T Consensus         2 ~~~~~~l~~~~WyhG~isR~eAe~lL~~~~~G~FLVR~S~~~~~~~~~ls~~~~~~~~H~~I~~~~--~~~~~~~-~~~F   78 (111)
T d1fu6a_           2 MNNNMSLQDAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKSIKIFHRD--GKYGFSD-PLTF   78 (111)
T ss_dssp             CCCCCCCSCCSSCCSSCCSHHHHHHSSSCSSCCCCCBSSCCSSSCCSBCEEEETTEEEECCCCCTT--TCCCTTT-TSCC
T ss_pred             CCCCCccCcCcCCCCCCCHHHHHHHhCcCCCCEEEEEeccCCCCccEEEEEecCCceEEEEEEEcC--CeEEECC-Cccc
Confidence            678889999999999999999999998878999999999765 46799999999999999998754  7777776 4789


Q ss_pred             CCHHHHHHHHhhCCcccCCC-cceEecCcccc
Q psy12508         80 DSVPEMIQHFAENRLPILGA-EHMCLLHPMIE  110 (113)
Q Consensus        80 ~sl~~lv~~y~~~~~~~~~~-~~~~L~~pv~~  110 (113)
                      +||.+||+||++++++.... ..+.|++||+|
T Consensus        79 ~sl~~LV~~y~~~~l~~~~~~l~~~L~~Pv~r  110 (111)
T d1fu6a_          79 NSVVELINHYRNESLAQYNPKLDVKLLYPVSK  110 (111)
T ss_dssp             CCTTHHHHHHHTTCSTTTCSSCCCCSCCCCCC
T ss_pred             CCHHHHHHHHhhCcCCccCCCCccccCccccC
Confidence            99999999999999876433 46889999986

>d1g83a2 d.93.1.1 (A:142-245) Tyrosine kinase Fyn {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine kinase Fyn
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.4e-30  Score=154.42  Aligned_cols=97  Identities=28%  Similarity=0.604  Sum_probs=82.9

Q ss_pred             CCCCCCCceeecCCHHHHHHHhcC--CCCceEEEEecCCCCCcEEEEEEe-----CCeeEEEEEEecCCCCcEEECcCCC
Q psy12508          5 KPLDQRNWYHGSVTRHEAENILRN--SNEGSYLVRNSESNRPDYSLSLKS-----ARGFMHMKIQRDPDTGKFILGQFSA   77 (113)
Q Consensus         5 ~~l~~~~w~~g~i~r~~ae~lL~~--~~~G~FLvR~s~~~~~~~~Lsv~~-----~~~v~h~~I~~~~~~~~~~~~~~~~   77 (113)
                      ++++.+|||||.|+|++||++|..  .++|+||||.|.+.+|.|+||++.     ++.|+|++|...+ .|.|++.+ ..
T Consensus         1 ~~l~~~~Wy~g~i~R~eAe~~L~~~g~~~G~FLVR~S~~~~g~~~Lsv~~~~~~~~~~v~h~~i~~~~-~g~~~~~~-~~   78 (104)
T d1g83a2           1 DSIQAEEWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIRKLD-NGGYYITT-RA   78 (104)
T ss_dssp             TSGGGSSSBCTTCCHHHHHHHHHSTTCCTTCEEEEECSSSTTCEEEEEEEECSSSCEEEEEEEEEECT-TSCEEETT-TE
T ss_pred             CccccCCCcCCCCCHHHHHHHHHhcCCCCCcEEEeccCCCCCCeEEEEEEeecCcCCeEEEEEEEEcC-CCCEEecC-Cc
Confidence            568899999999999999999965  478999999999999999999996     3469999999876 67888876 57


Q ss_pred             CCCCHHHHHHHHhhCCcccCCCcceEecCc
Q psy12508         78 PFDSVPEMIQHFAENRLPILGAEHMCLLHP  107 (113)
Q Consensus        78 ~F~sl~~lv~~y~~~~~~~~~~~~~~L~~p  107 (113)
                      .|+||.+||+||+.++..+.    +.|+.|
T Consensus        79 ~F~sl~~LV~~y~~~~~gL~----~~L~~P  104 (104)
T d1g83a2          79 QFETLQQLVQHYSERAAGLS----SRLVVP  104 (104)
T ss_dssp             EESSHHHHHHHHHHCCTTSS----SCCCCC
T ss_pred             ccCCHHHHHHHHhhCCCCCc----eeCCCC
Confidence            89999999999999987544    366665

>d1qada_ d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-alpha subunit {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Phosphatidylinositol 3-kinase, p85-alpha subunit
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=2e-30  Score=154.46  Aligned_cols=101  Identities=27%  Similarity=0.424  Sum_probs=84.1

Q ss_pred             CCCCCCceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCHHHH
Q psy12508          6 PLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSVPEM   85 (113)
Q Consensus         6 ~l~~~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl~~l   85 (113)
                      .++.++||||.|+|++|+++|++.++|+||||.|+ .++.|+||++.+++++|++|...+ +|.|.+. ....|+||.+|
T Consensus         5 ~~~~~~Wy~g~isR~eAe~lL~~~~~G~FLVR~S~-~~~~y~Lsv~~~~~v~H~~I~~~~-~g~~~~~-~~~~F~sl~~L   81 (107)
T d1qada_           5 HHDEKTWNVGSSNRNKAENLLRGKRDGTFLVRESS-KQGCYACSVVVDGEVKHCVINKTA-TGYGFAE-PYNLYSSLKEL   81 (107)
T ss_dssp             GGSGGGTEEEECCHHHHHHHHTTCCTTEEEEEEC----CCEEEEEEETTEEEEEEEEEET-TEEESST-TCCCBSSHHHH
T ss_pred             ccCCCcccCCCCCHHHHHHHHcCCCCCcEEEEecC-CCCCEEEEEEecCCeEEEEEEECC-CCeEEcC-CCCccCCHHHH
Confidence            36778999999999999999988899999999995 478999999999999999999886 4544444 35789999999


Q ss_pred             HHHHhhCCcccCCC-cceEecCccc
Q psy12508         86 IQHFAENRLPILGA-EHMCLLHPMI  109 (113)
Q Consensus        86 v~~y~~~~~~~~~~-~~~~L~~pv~  109 (113)
                      |+||+++++..... ..+.|+.||.
T Consensus        82 I~~Y~~~~l~~~~~~l~~~L~~Pv~  106 (107)
T d1qada_          82 VLHYQHTSLVQHNDSLNVTLAYPVY  106 (107)
T ss_dssp             HHHHHHSCGGGTCTTCCCCCCEETT
T ss_pred             HHHHHhCccccccCCCceEcccccc
Confidence            99999999876543 3678988874

>d1jyra_ d.93.1.1 (A:) Growth factor receptor-bound protein 2 (GRB2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Growth factor receptor-bound protein 2 (GRB2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.1e-30  Score=151.56  Aligned_cols=84  Identities=32%  Similarity=0.629  Sum_probs=76.3

Q ss_pred             CCCceeecCCHHHHHHHhcC-CCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCHHHHHH
Q psy12508          9 QRNWYHGSVTRHEAENILRN-SNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSVPEMIQ   87 (113)
Q Consensus         9 ~~~w~~g~i~r~~ae~lL~~-~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl~~lv~   87 (113)
                      ..|||||.|+|++||++|.. +++|+||||.|.+.+|.|+||++.+++++|++|.+.+ +|.|.+.+  ..|+||.+||+
T Consensus         2 s~pWy~g~isR~~Ae~lL~~~~~~G~FLvR~S~~~~g~~~LSv~~~~~v~H~~I~~~~-~g~~~~~~--~~F~sl~~LV~   78 (96)
T d1jyra_           2 SMAWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDG-AGKYFLWV--VKFNSLNELVD   78 (96)
T ss_dssp             CCTTBCCSCCHHHHHHHHHTCCSTTBEEEEECSSSTTCEEEEEEETTEEEEEECEECT-TSCEESSS--CEESSHHHHHH
T ss_pred             CCCccCCCCCHHHHHHHHhhCCCCCeEEEEecCCCCCCEEEEEEeCCceEEEEEEECC-CCeEEeCC--ccCCCHHHHHH
Confidence            57999999999999999964 5889999999999899999999999999999999876 67787765  68999999999


Q ss_pred             HHhhCCcc
Q psy12508         88 HFAENRLP   95 (113)
Q Consensus        88 ~y~~~~~~   95 (113)
                      ||+++++.
T Consensus        79 ~y~~~~l~   86 (96)
T d1jyra_          79 YHRSTSVS   86 (96)
T ss_dssp             HTTSSCSC
T ss_pred             HHhhCCCC
Confidence            99999875

>d1qcfa2 d.93.1.1 (A:146-248) Hemopoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Hemopoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5.5e-30  Score=151.56  Aligned_cols=95  Identities=25%  Similarity=0.528  Sum_probs=81.5

Q ss_pred             CCceeecCCHHHHHHHhcC--CCCceEEEEecCCCCCcEEEEEEe-----CCeeEEEEEEecCCCCcEEECcCCCCCCCH
Q psy12508         10 RNWYHGSVTRHEAENILRN--SNEGSYLVRNSESNRPDYSLSLKS-----ARGFMHMKIQRDPDTGKFILGQFSAPFDSV   82 (113)
Q Consensus        10 ~~w~~g~i~r~~ae~lL~~--~~~G~FLvR~s~~~~~~~~Lsv~~-----~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl   82 (113)
                      ++||||.|+|++||++|..  .++|+||||.|.+.+|.|+|||+.     ++.|+|++|...+ +|.|++.+ ...|+||
T Consensus         1 e~Wy~g~isR~eAe~~L~~~~~~~G~FLVR~S~~~~g~~~Lsv~~~~~~~~~~v~H~~i~~~~-~g~~~~~~-~~~F~sl   78 (103)
T d1qcfa2           1 EEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKIRTLD-NGGFYISP-RSTFSTL   78 (103)
T ss_dssp             STTEETTCCHHHHHHHHHSTTCCTTCEEEEECSSSTTSEEEEEEEEETTTEEEEEEEEEEECT-TSCEESSS-SSCBSSH
T ss_pred             CCccCCCCCHHHHHHHHhhcCCCCCcEEEEccCCCCCCeEEEEEecCCCcCceEEEEEEEEcC-CCceeecC-CcccCCH
Confidence            5899999999999998843  589999999999999999999985     3569999999876 67788766 5789999


Q ss_pred             HHHHHHHhhCCcccCCCcceEecCcccc
Q psy12508         83 PEMIQHFAENRLPILGAEHMCLLHPMIE  110 (113)
Q Consensus        83 ~~lv~~y~~~~~~~~~~~~~~L~~pv~~  110 (113)
                      .+||+||+.++..+    .+.|+.||++
T Consensus        79 ~~LV~~y~~~~~gL----~~~L~~PC~~  102 (103)
T d1qcfa2          79 QELVDHYKKGNDGL----CQKLSVPCMS  102 (103)
T ss_dssp             HHHHHHHTSSCTTS----SSCCCSBCCC
T ss_pred             HHHHHHHhhCCCCC----CccCCccCCC
Confidence            99999999987654    4579999875

>d1luia_ d.93.1.1 (A:) Itk/tsk protein tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Itk/tsk protein tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=9.3e-30  Score=151.73  Aligned_cols=99  Identities=27%  Similarity=0.497  Sum_probs=82.2

Q ss_pred             CCCCCCCceeecCCHHHHHHHhcC-CCCceEEEEecCCCCCcEEEEEEeC------CeeEEEEEEecCC-CCcEEECcCC
Q psy12508          5 KPLDQRNWYHGSVTRHEAENILRN-SNEGSYLVRNSESNRPDYSLSLKSA------RGFMHMKIQRDPD-TGKFILGQFS   76 (113)
Q Consensus         5 ~~l~~~~w~~g~i~r~~ae~lL~~-~~~G~FLvR~s~~~~~~~~Lsv~~~------~~v~h~~I~~~~~-~~~~~~~~~~   76 (113)
                      ++++.++||||.|+|++||++|.+ +++|+||||+|++ +|.|+||++..      +.++|++|....+ .+.|.+.. .
T Consensus         1 ~~l~~~~Wy~g~isR~eAe~lL~~~~~~G~FLVR~S~~-~g~y~LSv~~~~~~~~~~~i~h~~I~~~~~~~~~~~~~~-~   78 (108)
T d1luia_           1 NNLETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDSRT-PGTYTVSVFTKAIISENPCIKHYHIKETNDSPKRYYVAE-K   78 (108)
T ss_dssp             CCCTTSTTBCTTCCHHHHHHHHHHHCCTTEEEEEECCT-TTCEEEEEECSCCTTTCSCEEEEECEECCCSSCCEESSS-S
T ss_pred             CccccCCCcCCCCCHHHHHHHHHhcCCCCeEEEEecCC-CCCEEEEEEecCCcccCCceeEEEEEEecCCCceeecCC-C
Confidence            478999999999999999999954 6889999999965 79999999963      4589999987652 23566665 5


Q ss_pred             CCCCCHHHHHHHHhhCCcccCCCcceEecCccc
Q psy12508         77 APFDSVPEMIQHFAENRLPILGAEHMCLLHPMI  109 (113)
Q Consensus        77 ~~F~sl~~lv~~y~~~~~~~~~~~~~~L~~pv~  109 (113)
                      ..|+||.+||+||++++..+    .+.|+.||+
T Consensus        79 ~~F~sl~~LV~~y~~~~~~L----~~~L~~Pv~  107 (108)
T d1luia_          79 YVFDSIPLLIQYHQYNGGGL----VTRLRYPVC  107 (108)
T ss_dssp             CCBSSHHHHHHHHHTTCCSS----SSSSSEECC
T ss_pred             cccCCHHHHHHHHhhCCCCC----ccCCCCcCC
Confidence            78999999999999988754    457999986

>d2shpa3 d.93.1.1 (A:111-218) Tyrosine phoshatase shp-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine phoshatase shp-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.1e-29  Score=150.11  Aligned_cols=96  Identities=29%  Similarity=0.576  Sum_probs=84.4

Q ss_pred             CceeecCCHHHHHHHhcC-CCCceEEEEecCCCCCcEEEEEEeC----------CeeEEEEEEecCCCCcEEECcCCCCC
Q psy12508         11 NWYHGSVTRHEAENILRN-SNEGSYLVRNSESNRPDYSLSLKSA----------RGFMHMKIQRDPDTGKFILGQFSAPF   79 (113)
Q Consensus        11 ~w~~g~i~r~~ae~lL~~-~~~G~FLvR~s~~~~~~~~Lsv~~~----------~~v~h~~I~~~~~~~~~~~~~~~~~F   79 (113)
                      .||||.|+|++||++|++ +++|+||||.|++.+|.|+|||+..          +.++|+.|...+  +.|.+.+ ...|
T Consensus         1 rWyhG~i~R~~Ae~lL~~~~~~G~FLVR~S~~~~g~~~LSv~~~~~~~~~~~~~~~~~h~~i~~~~--~~~~~~~-~~~F   77 (108)
T d2shpa3           1 RWFHGHLSGKEAEKLLTEKGKHGSFLVRESQSHPGDFVLSVRTGDDKGESNDGKSKVTHVMIRCQE--LKYDVGG-GERF   77 (108)
T ss_dssp             TTBCCSCCHHHHHHHHHHTCCTTEEEEEECSSSTTCEEEEEEECC-----CCCCCEEEEEEEEEET--TEEESSS-SCCB
T ss_pred             CCCcCCCCHHHHHHHHhhcCCCCeEEEEecCCCCCCeEEEEEecCccccccccccceeeEEEEeCC--CceEeCC-Cccc
Confidence            499999999999999975 5899999999999899999999974          347899998765  7788876 5789


Q ss_pred             CCHHHHHHHHhhCCcccCCCcceEecCccc
Q psy12508         80 DSVPEMIQHFAENRLPILGAEHMCLLHPMI  109 (113)
Q Consensus        80 ~sl~~lv~~y~~~~~~~~~~~~~~L~~pv~  109 (113)
                      +||.+||+||++++++..++..+.|+.||+
T Consensus        78 ~sl~~LV~~y~~~~l~~~~g~~~~L~~Pv~  107 (108)
T d2shpa3          78 DSLTDLVEHYKKNPMVETLGTVLQLKQPLN  107 (108)
T ss_dssp             SSHHHHHHHHHHSCCBCTTSCBCCCCEECC
T ss_pred             CCHHHHHHHHhhCCCCCCCCceEEcCCCCc
Confidence            999999999999999877777789999985

>d2eyva1 d.93.1.1 (A:12-120) Crk proto-oncogen {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Crk proto-oncogen
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.8e-29  Score=150.54  Aligned_cols=92  Identities=28%  Similarity=0.589  Sum_probs=78.8

Q ss_pred             CceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCC-----------------cEEEC
Q psy12508         11 NWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTG-----------------KFILG   73 (113)
Q Consensus        11 ~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~-----------------~~~~~   73 (113)
                      .||||.|+|++||++|+..++|+||||+|.+.++.|+||++.+++++|++|...+ ++                 .|..+
T Consensus         1 sWy~g~isR~~Ae~lL~~~~~G~FLVR~S~~~~~~~~LS~~~~~~v~H~~I~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   79 (109)
T d2eyva1           1 SWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSG-PRPPVPPSPAQPPPGVSPSRLRIG   79 (109)
T ss_dssp             TSCCBCCCHHHHHHHCSSCSTTCEEEECCCSSSSCEEEEEEETTEEEEEEEECCC-CSSCCCSSSSCCCCSCCCCCEEET
T ss_pred             CCCCCCCCHHHHHHHhcCCCCCeEEeeecCCCCCCEEEEEEECCEEEEEEEEEcC-CcceeeccccccccccccceEEeC
Confidence            5999999999999999888999999999999899999999999999999999765 22                 23333


Q ss_pred             cCCCCCCCHHHHHHHHhhCCcccCCCcceEecCcccc
Q psy12508         74 QFSAPFDSVPEMIQHFAENRLPILGAEHMCLLHPMIE  110 (113)
Q Consensus        74 ~~~~~F~sl~~lv~~y~~~~~~~~~~~~~~L~~pv~~  110 (113)
                      +  ..|+||.+||+||+.+++.     .+.|+.||+|
T Consensus        80 ~--~~F~sl~~LV~~y~~~~l~-----~~~L~~P~~r  109 (109)
T d2eyva1          80 D--QEFDSLPALLEFYKIHYLD-----TTTLIEPVSR  109 (109)
T ss_dssp             T--EEESSHHHHHHHSSSSCSS-----SSCCCSBCCS
T ss_pred             C--eeeCCHHHHHHHHhhCcCC-----CCccCCcCCC
Confidence            2  5799999999999999874     3469999986

>d2c9wa2 d.93.1.1 (A:32-134) Suppressor of cytokine signaling 2, SOCS-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Suppressor of cytokine signaling 2, SOCS-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.3e-28  Score=144.51  Aligned_cols=85  Identities=33%  Similarity=0.588  Sum_probs=75.6

Q ss_pred             CCCCCCceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcC------CCCC
Q psy12508          6 PLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQF------SAPF   79 (113)
Q Consensus         6 ~l~~~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~------~~~F   79 (113)
                      .++.+|||||.|+|++||++|.+.++|+||||.|...++.|+||++.+++++|++|...+  +.|.++..      ...|
T Consensus        11 ~l~~~~Wy~g~i~R~~Ae~~L~~~~~GtFLVR~S~~~~~~~~LSv~~~~~v~H~~I~~~~--~~~~~~~~~~~~~~~~~F   88 (103)
T d2c9wa2          11 ELGQTGWYWGSMTVNEAKEKLKEAPEGTFLIRDSSHSDYLLTISVKTSAGPTNLRIEYQD--GKFRLDSIICVKSKLKQF   88 (103)
T ss_dssp             HHHHTSCBCTTCCHHHHHHHHTTSCTTCEEEEECCSTTCSEEEEEEETTEEEEEEEEEET--TEEEECTTTTTGGGCCCB
T ss_pred             HHhhCCCcCCCCCHHHHHHHhcCCCCCceEEeccCCCCCCEEEEEEECCEEEEEEEEEcC--CeEeeCCccccccCCCcc
Confidence            456789999999999999999888999999999999899999999999999999999875  77777542      3579


Q ss_pred             CCHHHHHHHHhhC
Q psy12508         80 DSVPEMIQHFAEN   92 (113)
Q Consensus        80 ~sl~~lv~~y~~~   92 (113)
                      +||.+||+||++.
T Consensus        89 ~sl~~LI~~y~~~  101 (103)
T d2c9wa2          89 DSVVHLIDYYVQM  101 (103)
T ss_dssp             SCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhh
Confidence            9999999999875

>d1rpya_ d.93.1.1 (A:) Adaptor protein Aps {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Adaptor protein Aps
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.95  E-value=7.2e-30  Score=146.57  Aligned_cols=83  Identities=23%  Similarity=0.491  Sum_probs=69.5

Q ss_pred             CCCCCCceeecCCHHHHHHHhcCC---CCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCH
Q psy12508          6 PLDQRNWYHGSVTRHEAENILRNS---NEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSV   82 (113)
Q Consensus         6 ~l~~~~w~~g~i~r~~ae~lL~~~---~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl   82 (113)
                      .+.++|||||.|+|++|+++|...   ++|+||||.|.+.+|.|+|||+.++.++|++|...+ +|.|.+.+  ..|+||
T Consensus         1 el~~~pWyhg~isR~~Ae~lL~~~~~~~dG~FLvR~S~~~~g~~~Lsv~~~~~v~h~~I~~~~-~~~~~~~~--~~F~sl   77 (86)
T d1rpya_           1 ELSDYPWFHGTLSRVKAAQLVLAGGPRSHGLFVIRQSETRPGECVLTFNFQGKAKHLRLSLNG-HGQCHVQH--LWFQSV   77 (86)
T ss_dssp             CGGGSTTBCTTCCHHHHHHHHHTTGGGGTTCEEEEECSSSTTCEEEEEEETTEEEEEEC-----CCCHHHHH--HHHHHH
T ss_pred             CCccCcccCCCCCHHHHHHHHHhCCCCCCceEEEEecCCCCCcEEEEEEECCceEEEEEEEcC-CceEEeCC--CeeCCH
Confidence            367899999999999999999762   579999999998899999999999999999999876 56555554  789999


Q ss_pred             HHHHHHHhh
Q psy12508         83 PEMIQHFAE   91 (113)
Q Consensus        83 ~~lv~~y~~   91 (113)
                      .+||+||+.
T Consensus        78 ~~LV~~y~t   86 (86)
T d1rpya_          78 FDMLRHFHT   86 (86)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHhhcC
Confidence            999999973

>d1xa6a2 d.93.1.1 (A:21-161) Beta-chimaerin, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Beta-chimaerin, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.7e-24  Score=132.23  Aligned_cols=83  Identities=25%  Similarity=0.575  Sum_probs=70.2

Q ss_pred             CCCCCCCceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCHHH
Q psy12508          5 KPLDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSVPE   84 (113)
Q Consensus         5 ~~l~~~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl~~   84 (113)
                      .++...+||||.|+|++||++|.. ++|+||||.|.+.+|.|+|||+.+++++||+|.++   |.+++.+  ..|+||.+
T Consensus        30 ~~~~~~~wyhG~isR~eAe~lL~~-~dGsFLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~---g~~~~~~--~~F~sl~e  103 (141)
T d1xa6a2          30 RPKYYGREFHGIISREQADELLGG-VEGAYILRESQRQPGCYTLALRFGNQTLNYRLFHD---GKHFVGE--KRFESIHD  103 (141)
T ss_dssp             SSCSSCSSEEEECCHHHHHHHHCS-CTTBEEEEECSSSTTCEEEEEEETTEEEECCCEES---SSEECSS--SCCCCSSH
T ss_pred             CcccccceeeccCCHHHHHHHHcC-CCCeEEEEecCCCCCCEEEEEEECCEEEEEEEEEC---CCEEECC--CeECCHHH
Confidence            456677999999999999999964 68999999999888999999999999999999863   5666665  68999999


Q ss_pred             HHH-----HHhhCC
Q psy12508         85 MIQ-----HFAENR   93 (113)
Q Consensus        85 lv~-----~y~~~~   93 (113)
                      ||+     +|+...
T Consensus       104 LV~dgLv~~~~~~~  117 (141)
T d1xa6a2         104 LVTDGLITLYIETK  117 (141)
T ss_dssp             HHHHHHHHHHHHHS
T ss_pred             HHhhhhhhhhcccc
Confidence            885     565543

>d1uura3 d.93.1.1 (A:577-707) STAT homologue {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: STAT homologue
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.72  E-value=4e-18  Score=103.89  Aligned_cols=76  Identities=20%  Similarity=0.364  Sum_probs=63.4

Q ss_pred             CCCCceeecCCHHHHHHHhcCCCCceEEEEecCCCCCcEEEEEEeC---CeeEEEEEEecCCCCcEEECcCCCCCCCHHH
Q psy12508          8 DQRNWYHGSVTRHEAENILRNSNEGSYLVRNSESNRPDYSLSLKSA---RGFMHMKIQRDPDTGKFILGQFSAPFDSVPE   84 (113)
Q Consensus         8 ~~~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~---~~v~h~~I~~~~~~~~~~~~~~~~~F~sl~~   84 (113)
                      ....||||.|+|++|+++|++.++|+||||.|++.+|.|+||++..   +.++|+.|...+  +       ...|.++.+
T Consensus         7 w~~~~~~G~isr~~ae~~L~~~~~GtFLvR~S~s~~g~~~ls~~~~~~~~~v~h~~i~~~~--~-------~~~~~sl~d   77 (131)
T d1uura3           7 WQEGIIYGYMGRQEVNDALQNQDPGTFIIRFSERNPGQFGIAYIGVEMPARIKHYLVQPND--T-------AAAKKTFPD   77 (131)
T ss_dssp             HHHTSSCBSCCHHHHHHTTSSCCTTCEEEEECSSSTTCEEEEEECSSSSCCEEEEECCGGG--S-------BTTTBCHHH
T ss_pred             hhCCcEEccCCHHHHHHHHhcCCCCeEEEEecCCCCCcEEEEEEEecCCCcEEEEEEeecC--C-------CcccccHHH
Confidence            3457999999999999999888999999999999999999999974   569999997653  2       246788888


Q ss_pred             HHHHHhhC
Q psy12508         85 MIQHFAEN   92 (113)
Q Consensus        85 lv~~y~~~   92 (113)
                      ++..|...
T Consensus        78 ~l~~~~~~   85 (131)
T d1uura3          78 FLSEHSQF   85 (131)
T ss_dssp             HHTTCTTC
T ss_pred             HHHhHHHh
Confidence            88766544

>d1bg1a3 d.93.1.1 (A:576-716) STAT3b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: STAT3b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=8.9e-20  Score=112.04  Aligned_cols=83  Identities=19%  Similarity=0.189  Sum_probs=68.6

Q ss_pred             CCCCCceeecCCHHHHHHHhcCCCCceEEEEecC-CCCCcEEEEEEeCCeeEEEEEEecCCCCcEEECcCCCCCCCHHHH
Q psy12508          7 LDQRNWYHGSVTRHEAENILRNSNEGSYLVRNSE-SNRPDYSLSLKSARGFMHMKIQRDPDTGKFILGQFSAPFDSVPEM   85 (113)
Q Consensus         7 l~~~~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~-~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~F~sl~~l   85 (113)
                      +....||||.|+|++|+++|+++++|+||||.|+ +.+|.++|+++..+...|++|....  . |....  -.|.||+|+
T Consensus         4 lW~~gw~~G~isr~~a~~~L~~~~~GtFLvR~S~~s~~G~~tis~~~~~~~~~~~i~~~~--p-~t~~d--l~~~sL~dl   78 (141)
T d1bg1a3           4 LWNEGYIMGFISKERERAILSTKPPGTFLLRFSESSKEGGVTFTWVEKDISGSTQIQSVE--P-YTKQQ--LNNMSFAEI   78 (141)
T ss_dssp             HHHSSCCCBCCCTTGGGTTTTTSCTTCBCEEECSSCSSCCEEECCCCSSSCSSCCCCCCC--C-BCGGG--GTSSCHHHH
T ss_pred             eecCCeEEEeCCHHHHHHHhhCCCCCeEEEEecCCccCCCEEEEEEecCcCCceEEeecC--C-eecCc--cccCCHHHH
Confidence            4467899999999999999998899999999998 5689999999988888888886543  2 44333  579999999


Q ss_pred             HHHHhhCCc
Q psy12508         86 IQHFAENRL   94 (113)
Q Consensus        86 v~~y~~~~~   94 (113)
                      |.||+....
T Consensus        79 I~~y~~~~~   87 (141)
T d1bg1a3          79 IMGYKIMDA   87 (141)
T ss_dssp             TTSCCCBCT
T ss_pred             HHhhhhhcc
Confidence            999975543

>d1bf5a3 d.93.1.1 (A:569-710) STAT-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: STAT-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=1e-07  Score=57.40  Aligned_cols=42  Identities=19%  Similarity=0.411  Sum_probs=37.5

Q ss_pred             CceeecCCHHHHHHHhcCCCCceEEEEecCCC-CCcEEEEEEe
Q psy12508         11 NWYHGSVTRHEAENILRNSNEGSYLVRNSESN-RPDYSLSLKS   52 (113)
Q Consensus        11 ~w~~g~i~r~~ae~lL~~~~~G~FLvR~s~~~-~~~~~Lsv~~   52 (113)
                      -|..|.|+|++|+++|+++++|+||+|-|++. +|..+++...
T Consensus         8 G~I~GFIsK~~a~~~L~~~~~GTFLLRFSdS~~~GgitiawV~   50 (142)
T d1bf5a3           8 GCIMGFISKERERALLKDQQPGTFLLRFSESSREGAITFTWVE   50 (142)
T ss_dssp             TCCCCCCCHHHHHHHTTTCCSCCCCEEECSSCSSCCEEEEECC
T ss_pred             CEEEEEecHHHHHHHhhCCCCceEEEEeccCccCCceEEEEEE
Confidence            46789999999999999999999999999986 5988888875

>d3buxb3 d.93.1.1 (B:264-351) Cbl {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Cbl
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.96  E-value=0.018  Score=30.38  Aligned_cols=44  Identities=23%  Similarity=0.314  Sum_probs=37.8

Q ss_pred             CCceeecCCHHHHHHHhcC--CCCceEEEEecCCCCCcEEEEEEeC
Q psy12508         10 RNWYHGSVTRHEAENILRN--SNEGSYLVRNSESNRPDYSLSLKSA   53 (113)
Q Consensus        10 ~~w~~g~i~r~~ae~lL~~--~~~G~FLvR~s~~~~~~~~Lsv~~~   53 (113)
                      +|=|...++=+|+...|..  ..+|+|+.|.|....|++++-....
T Consensus         2 HPgY~AFlTYDevk~rL~~~~~kPGSYiFRlSCTrlGQWAIGyvt~   47 (88)
T d3buxb3           2 HPGYMAFLTYDEVKARLQKFIHKPGSYIFRLSCTRLGQWAIGYVTA   47 (88)
T ss_dssp             CTTBCTTCCHHHHHHHHGGGTTSTTEEEEEECSSSTTSEEEEEECT
T ss_pred             CCceeEEEeHHHHHHHHHHHhcCCCceEEeeccccccceeeeeecc
Confidence            4667788899999998875  5899999999999999999988764

>d1wlha1 b.1.18.10 (A:547-647) F-actin cross-linking gelation factor (ABP-120) repeats {Dictyostelium discoideum [TaxId: 44689]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: F-actin cross-linking gelation factor (ABP-120) repeats
species: Dictyostelium discoideum [TaxId: 44689]

Probab=88.59  E-value=0.36  Score=25.93  Aligned_cols=29  Identities=21%  Similarity=0.361  Sum_probs=24.7

Q ss_pred             cCCCCceEEEEecCCCCCcEEEEEEeCCe
Q psy12508         27 RNSNEGSYLVRNSESNRPDYSLSLKSARG   55 (113)
Q Consensus        27 ~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~   55 (113)
                      .+..+|+|.|+-....+|.|.|+|+.++.
T Consensus        60 ~~~~dGty~v~y~p~~~G~y~i~V~~~g~   88 (101)
T d1wlha1          60 VDNGDGTYDVEFEPKEAGDYVINLTLDGD   88 (101)
T ss_dssp             CCCSSSEEEEEECCCSCSEEEEEEEESSS
T ss_pred             EEcCCCeEEEEEEeCCCccEEEEEEECCE
Confidence            34588999999999999999999998654

>d2w0pa1 b.1.18.10 (A:2237-2328) Filamin a {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.38  E-value=0.26  Score=26.38  Aligned_cols=28  Identities=25%  Similarity=0.296  Sum_probs=23.3

Q ss_pred             CCCCceEEEEecCCCCCcEEEEEEeCCe
Q psy12508         28 NSNEGSYLVRNSESNRPDYSLSLKSARG   55 (113)
Q Consensus        28 ~~~~G~FLvR~s~~~~~~~~Lsv~~~~~   55 (113)
                      +..+|+|.|+-.+..+|.|.|+|++++.
T Consensus        51 d~~dg~y~v~ytP~~~G~y~i~V~~~g~   78 (92)
T d2w0pa1          51 DRKDGSCGVAYVVQEPGDYEVSVKFNEE   78 (92)
T ss_dssp             ECTTSCEEEEEECSSCEEEEEEEEETTE
T ss_pred             ECCCCEEEEEEEECCCceEEEEEEECCE
Confidence            4578899999998888999999988764

>d2dj4a1 b.1.18.10 (A:8-108) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.56  E-value=0.32  Score=26.34  Aligned_cols=28  Identities=25%  Similarity=0.351  Sum_probs=23.1

Q ss_pred             CCCCceEEEEecCCCCCcEEEEEEeCCe
Q psy12508         28 NSNEGSYLVRNSESNRPDYSLSLKSARG   55 (113)
Q Consensus        28 ~~~~G~FLvR~s~~~~~~~~Lsv~~~~~   55 (113)
                      +..+|+|.++-.+...|.|.|.++.++.
T Consensus        56 ~~~dG~y~v~y~P~~~G~y~i~V~~~g~   83 (101)
T d2dj4a1          56 DNGDGTHTVTYTPSQEGPYMVSVKYADE   83 (101)
T ss_dssp             ECSSSEEEEEECCSSCEEEEEEEEESSS
T ss_pred             eCCCCEEEEEEEeCCCeeEEEEEEECCE
Confidence            3578999999998888999999988654

>d2diaa1 b.1.18.10 (A:8-107) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.93  E-value=0.39  Score=25.83  Aligned_cols=28  Identities=25%  Similarity=0.406  Sum_probs=23.0

Q ss_pred             CCCCceEEEEecCCCCCcEEEEEEeCCe
Q psy12508         28 NSNEGSYLVRNSESNRPDYSLSLKSARG   55 (113)
Q Consensus        28 ~~~~G~FLvR~s~~~~~~~~Lsv~~~~~   55 (113)
                      +..+|+|.++-.....|.|.|+++.++.
T Consensus        55 ~~~dg~y~v~y~P~~~G~h~i~V~~~g~   82 (100)
T d2diaa1          55 NNKDGTYAVTYVPLTAGMYTLTMKYGGE   82 (100)
T ss_dssp             ECTTSEEEEEEECSSCEEEEEEEEETTE
T ss_pred             ECCCCEEEEEEEeCcCccEEEEEEECCE
Confidence            4578899999888888889999988654

>d2di8a1 b.1.18.10 (A:8-105) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.72  E-value=0.52  Score=25.35  Aligned_cols=28  Identities=21%  Similarity=0.145  Sum_probs=23.5

Q ss_pred             CCCCceEEEEecCCCCCcEEEEEEeCCe
Q psy12508         28 NSNEGSYLVRNSESNRPDYSLSLKSARG   55 (113)
Q Consensus        28 ~~~~G~FLvR~s~~~~~~~~Lsv~~~~~   55 (113)
                      +..+|+|.++-.+..+|.|.|++.+++.
T Consensus        53 ~~~dg~y~v~y~P~~~G~y~i~V~~~g~   80 (98)
T d2di8a1          53 DLEDGTCKVSYFPTVPGVYIVSTKFADE   80 (98)
T ss_dssp             BCTTSCEEEEECCCSCSEEEEEEEESSC
T ss_pred             ECCCCEEEEEEEECCCceEEEEEEECCE
Confidence            4578999999999889999999998653

>d2d7na1 b.1.18.10 (A:8-87) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.51  E-value=0.35  Score=25.22  Aligned_cols=28  Identities=14%  Similarity=0.286  Sum_probs=23.5

Q ss_pred             CCCCceEEEEecCCCCCcEEEEEEeCCe
Q psy12508         28 NSNEGSYLVRNSESNRPDYSLSLKSARG   55 (113)
Q Consensus        28 ~~~~G~FLvR~s~~~~~~~~Lsv~~~~~   55 (113)
                      +..+|+|-|+-.+...|.|.|+++.++.
T Consensus        35 ~~~dg~y~v~y~P~~~G~h~v~V~~~g~   62 (80)
T d2d7na1          35 DNKDGTITVRYAPTEKGLHQMGIKYDGN   62 (80)
T ss_dssp             ECSSSCEEEEECCSSCEEEEEEEEESSS
T ss_pred             ECCCCEEEEEEEECCcEEEEEEEEECCE
Confidence            4578999999999888999999998654

>d1qfha1 b.1.18.10 (A:646-749) F-actin cross-linking gelation factor (ABP-120) repeats {Dictyostelium discoideum [TaxId: 44689]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: F-actin cross-linking gelation factor (ABP-120) repeats
species: Dictyostelium discoideum [TaxId: 44689]

Probab=84.95  E-value=0.46  Score=25.70  Aligned_cols=28  Identities=18%  Similarity=0.368  Sum_probs=23.9

Q ss_pred             CCCCceEEEEecCCCCCcEEEEEEeCCe
Q psy12508         28 NSNEGSYLVRNSESNRPDYSLSLKSARG   55 (113)
Q Consensus        28 ~~~~G~FLvR~s~~~~~~~~Lsv~~~~~   55 (113)
                      +..+|+|-|+-....+|.|.|.|..++.
T Consensus        64 d~~dGtY~v~y~p~~~G~~~i~V~~~g~   91 (104)
T d1qfha1          64 DNNDGTYGVVYDAPVEGNYNVNVTLRGN   91 (104)
T ss_dssp             ECSSSEEEEEECCCSSEEEEEEEEETTE
T ss_pred             ECCCCEEEEEEEeCCCEeEEEEEEECCE
Confidence            4578999999999888999999998764

>d2d7ma1 b.1.18.10 (A:8-109) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.66  E-value=0.4  Score=26.05  Aligned_cols=28  Identities=18%  Similarity=0.400  Sum_probs=22.7

Q ss_pred             CCCCceEEEEecCCCCCcEEEEEEeCCe
Q psy12508         28 NSNEGSYLVRNSESNRPDYSLSLKSARG   55 (113)
Q Consensus        28 ~~~~G~FLvR~s~~~~~~~~Lsv~~~~~   55 (113)
                      +..+|+|.++-.+..+|.|.|.|++.+.
T Consensus        57 ~~~dg~y~v~y~P~~~G~h~i~V~~~g~   84 (102)
T d2d7ma1          57 DNGDGTYTVSYLPDMSGRYTITIKYGGD   84 (102)
T ss_dssp             ECSSSCEEEEECCCSCEEEEEEEEESSC
T ss_pred             eCCCcEEEEEEEECCCEeEEEEEEECCE
Confidence            3567899999988888899999987653

>d2dica1 b.1.18.10 (A:8-105) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.98  E-value=0.47  Score=25.47  Aligned_cols=28  Identities=14%  Similarity=0.248  Sum_probs=23.2

Q ss_pred             CCCCceEEEEecCCCCCcEEEEEEeCCe
Q psy12508         28 NSNEGSYLVRNSESNRPDYSLSLKSARG   55 (113)
Q Consensus        28 ~~~~G~FLvR~s~~~~~~~~Lsv~~~~~   55 (113)
                      +..+|+|.|+-.+...|.|.|+|++++.
T Consensus        53 ~~~dg~y~v~y~P~~~G~y~i~V~~~g~   80 (98)
T d2dica1          53 DNKDGSCSAEYIPFAPGDYDVNITYGGA   80 (98)
T ss_dssp             ECSSSCEEEEECCSSCEEEEEEEEETTE
T ss_pred             ECCCCEEEEEEEECCCceEEEEEEECCE
Confidence            3578899999988888999999988654

>d2diba1 b.1.18.10 (A:8-122) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.31  E-value=0.48  Score=26.19  Aligned_cols=28  Identities=11%  Similarity=0.160  Sum_probs=23.3

Q ss_pred             CCCCceEEEEecCCCCCcEEEEEEeCCe
Q psy12508         28 NSNEGSYLVRNSESNRPDYSLSLKSARG   55 (113)
Q Consensus        28 ~~~~G~FLvR~s~~~~~~~~Lsv~~~~~   55 (113)
                      +..+|+|.++-.....|.|.|+|+.++.
T Consensus        70 ~~~dG~y~v~y~P~~~G~~~i~V~~~g~   97 (115)
T d2diba1          70 DNADGTYQVEYTPFEKGLHVVEVTYDDV   97 (115)
T ss_dssp             ECSSSEEEEEECCSSCSEEEEEEBSSSC
T ss_pred             ECCCCEEEEEEEeCCCEeEEEEEEECCE
Confidence            4578999999999888999999987654

>d2d7pa1 b.1.18.10 (A:8-106) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.11  E-value=0.76  Score=24.69  Aligned_cols=28  Identities=11%  Similarity=0.020  Sum_probs=22.6

Q ss_pred             CCCCceEEEEecCCCCCcEEEEEEeCCe
Q psy12508         28 NSNEGSYLVRNSESNRPDYSLSLKSARG   55 (113)
Q Consensus        28 ~~~~G~FLvR~s~~~~~~~~Lsv~~~~~   55 (113)
                      +..+|.|.++-.+..+|.|.|+++.++.
T Consensus        54 ~~~dg~y~v~y~P~~~G~~~i~V~~~g~   81 (99)
T d2d7pa1          54 ELDSDKHTIRFIPHENGVHSIDVKFNGA   81 (99)
T ss_dssp             SCBTTEEEEEECCSSCEEEEEEEEESSC
T ss_pred             eCCCCEEEEEEEECCCCcEEEEEEECCE
Confidence            3467899999888888889998887654

>d2di9a1 b.1.18.10 (A:8-125) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.07  E-value=0.76  Score=25.38  Aligned_cols=27  Identities=11%  Similarity=0.174  Sum_probs=19.2

Q ss_pred             CCCceEEEEecCCCCCcEEEEEEeCCe
Q psy12508         29 SNEGSYLVRNSESNRPDYSLSLKSARG   55 (113)
Q Consensus        29 ~~~G~FLvR~s~~~~~~~~Lsv~~~~~   55 (113)
                      ..+|+|.|+-.....|.|.|+++.++.
T Consensus        74 ~~dG~y~v~ytP~~~G~y~i~V~~~g~  100 (118)
T d2di9a1          74 NGDGTCSVSYLPTKPGEYFVNILFEEV  100 (118)
T ss_dssp             CSSSEEEEEEECSSSSEEEEEEEESSC
T ss_pred             CCCCEEEEEEEeCCcEeEEEEEEECCE
Confidence            466777777777777777777776543

>d2bp3a1 b.1.18.10 (A:1863-1954) Filamin a {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.71  E-value=0.85  Score=24.11  Aligned_cols=27  Identities=22%  Similarity=0.250  Sum_probs=20.7

Q ss_pred             CCCceEEEEecCCCCCcEEEEEEeCCe
Q psy12508         29 SNEGSYLVRNSESNRPDYSLSLKSARG   55 (113)
Q Consensus        29 ~~~G~FLvR~s~~~~~~~~Lsv~~~~~   55 (113)
                      ..+|+|.+.-.+...|.|.|+++.++.
T Consensus        53 ~~dg~y~v~ytP~~~G~h~i~V~~~g~   79 (92)
T d2bp3a1          53 NQDGTCSVSYLPVLPGDYSILVKYNEQ   79 (92)
T ss_dssp             CSSSEEEEEEECSSCEEEEEEEEETTE
T ss_pred             CCCCEEEEEEEECCCccEEEEEEECCE
Confidence            467888888888777888888887653

>d1v05a_ b.1.18.10 (A:) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.57  E-value=0.86  Score=24.22  Aligned_cols=28  Identities=21%  Similarity=0.256  Sum_probs=19.3

Q ss_pred             CCCCceEEEEecCCCCCcEEEEEEeCCe
Q psy12508         28 NSNEGSYLVRNSESNRPDYSLSLKSARG   55 (113)
Q Consensus        28 ~~~~G~FLvR~s~~~~~~~~Lsv~~~~~   55 (113)
                      +..+|.|.|+-.+...|.|.|+++.++.
T Consensus        57 ~~~~g~y~v~y~P~~~G~~~v~V~~~g~   84 (96)
T d1v05a_          57 HMGNRVYNVTYTVKEKGDYILIVKWGDE   84 (96)
T ss_dssp             ECSTTEEEEEEECSSCEEEEEEEEETTE
T ss_pred             ECCCCEEEEEEEeCCCccEEEEEEECCE
Confidence            3466777777777777777777776553