Psyllid ID: psy12536

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-----

MPLTAPTACWALVALIVVDLLIDHQYDLAVQALGMELRVAGCSLIYRKALRLSKTALGDTTVGQVVNLLSNDVNRFDTACIFLHHLINRLLGAKKMYLGKKTSELRLKTALRTDERVRLMNEIISGIQVIKMYAWERSFASMVRNARKKEIQQIRGSTYIKGVLLSFIIFHTRSIFIKNIKAKWLPDQPDYTLNDITLDVKNAES

cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHcEEEEEccccc

ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHEEEEEEccccccccHHHHHcHHHccc

MPLTAPTACWALVALIVVDLLIDHQYDLAVQALGMELRVAGCSLIYRKALRLSktalgdttVGQVVNLLSNDVNRFDTACIFLHHLINRLLGAKKMYLGKKTSELRLKTALRTDERVRLMNEIISGIQVIKMYAWERSFASMVRNARKKEIQQIRGSTYIKGVLLSFIIFHTRSIFIKNikakwlpdqpdytlnditLDVKNAES

MPLTAPTACWALVALIVVDLLIDHQYDLAVQALGMELRVAGCSLIYRKALRLSktalgdttvGQVVNLLSNDVNRFDTACIFLHHLINRLLGAKKMYlgkktselrlktalrtderVRLMNEIISGIQVIKMYAWERSFASMVRNARKKEiqqirgstyiKGVLLSFIIFHTRSIFIKNikakwlpdqpdytlnditLDVKNAES

MPLTAPTACWalvalivvdllidHQYDLAVQALGMELRVAGCSLIYRKALRLSKTALGDTTVGQVVNLLSNDVNRFDTACIFLHHLINRLLGAKKMYLGKKTSELRLKTALRTDERVRLMNEIISGIQVIKMYAWERSFASMVRNARKKEIQQIRGSTYIKGVLLSFIIFHTRSIFIKNIKAKWLPDQPDYTLNDITLDVKNAES

*****PTACWALVALIVVDLLIDHQYDLAVQALGMELRVAGCSLIYRKALRLSKTALGDTTVGQVVNLLSNDVNRFDTACIFLHHLINRLLGAKKMYLGKKTSELRLKTALRTDERVRLMNEIISGIQVIKMYAWERSFASMVRNARKKEIQQIRGSTYIKGVLLSFIIFHTRSIFIKNIKAKWLPDQPDYTLNDITL*******

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

oooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooo

oooooooooooHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		205	2.2.26 [Sep-21-2011]
O15439		1325	Multidrug resistance-asso	no	N/A	0.765	0.118	0.450	8e-35
P91660		1290	Probable multidrug resist	no	N/A	0.785	0.124	0.418	2e-32
Q00552		1481	Cystic fibrosis transmemb	no	N/A	0.736	0.101	0.292	1e-17
Q2IBE4		1480	Cystic fibrosis transmemb	no	N/A	0.736	0.102	0.303	3e-17
Q9TUQ2		1481	Cystic fibrosis transmemb	N/A	N/A	0.736	0.101	0.303	4e-17
Q00553		1481	Cystic fibrosis transmemb	no	N/A	0.736	0.101	0.303	4e-17
Q7JII7		1481	Cystic fibrosis transmemb	N/A	N/A	0.736	0.101	0.303	4e-17
Q7JII8		1481	Cystic fibrosis transmemb	N/A	N/A	0.736	0.101	0.303	4e-17
Q9TSP5		1481	Cystic fibrosis transmemb	N/A	N/A	0.736	0.101	0.303	4e-17
Q2IBA1		1481	Cystic fibrosis transmemb	N/A	N/A	0.736	0.101	0.303	4e-17

>sp\|O15439\|MRP4_HUMAN Multidrug resistance-associated protein 4 OS=Homo sapiens GN=ABCC4 PE=1 SV=3	Back alignment and function desciption

 Score =  146 bits (369), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 86/191 (45%), Positives = 115/191 (60%), Gaps = 34/191 (17%)

Query: 21  LIDHQYDLAVQALGMELRVAGCSLIYRKALRLSKTALGDTTVGQVVNLLSNDVNRFDTAC 80
           ++ H Y   VQ  GM LRVA C +IYRKALRLS  A+G TT GQ+VNLLSNDVN+FD   
Sbjct: 150 ILHHLYFYHVQCAGMRLRVAMCHMIYRKALRLSNMAMGKTTTGQIVNLLSNDVNKFDQVT 209

Query: 81  IFLHHL-------------------INRLLGAKKMYL--------GKKTSELRLKTALRT 113
           +FLH L                   I+ L G   + +        GK  S LR KTA  T
Sbjct: 210 VFLHFLWAGPLQAIAVTALLWMEIGISCLAGMAVLIILLPLQSCFGKLFSSLRSKTATFT 269

Query: 114 DERVRLMNEIISGIQVIKMYAWERSFASMVRNARKKEIQQIRGSTYIKGV-LLSF----- 167
           D R+R MNE+I+GI++IKMYAWE+SF++++ N RKKEI +I  S+ ++G+ L SF     
Sbjct: 270 DARIRTMNEVITGIRIIKMYAWEKSFSNLITNLRKKEISKILRSSCLRGMNLASFFSASK 329

Query: 168 -IIFHTRSIFI 177
            I+F T + ++
Sbjct: 330 IIVFVTFTTYV 340

May be an organic anion pump relevant to cellular detoxification.
Homo sapiens (taxid: 9606)

>sp\|P91660\|L259_DROME Probable multidrug resistance-associated protein lethal(2)03659 OS=Drosophila melanogaster GN=l(2)03659 PE=2 SV=3	Back alignment and function description

>sp\|Q00552\|CFTR_CAVPO Cystic fibrosis transmembrane conductance regulator OS=Cavia porcellus GN=CFTR PE=2 SV=2	Back alignment and function description

>sp\|Q2IBE4\|CFTR_PONAB Cystic fibrosis transmembrane conductance regulator OS=Pongo abelii GN=CFTR PE=3 SV=1	Back alignment and function description

>sp\|Q9TUQ2\|CFTR_MACNE Cystic fibrosis transmembrane conductance regulator OS=Macaca nemestrina GN=CFTR PE=3 SV=1	Back alignment and function description

>sp\|Q00553\|CFTR_MACMU Cystic fibrosis transmembrane conductance regulator OS=Macaca mulatta GN=CFTR PE=2 SV=2	Back alignment and function description

>sp\|Q7JII7\|CFTR_MACFU Cystic fibrosis transmembrane conductance regulator OS=Macaca fuscata fuscata GN=CFTR PE=3 SV=1	Back alignment and function description

>sp\|Q7JII8\|CFTR_MACFA Cystic fibrosis transmembrane conductance regulator OS=Macaca fascicularis GN=CFTR PE=3 SV=1	Back alignment and function description

>sp\|Q9TSP5\|CFTR_PAPAN Cystic fibrosis transmembrane conductance regulator OS=Papio anubis GN=CFTR PE=3 SV=1	Back alignment and function description

>sp\|Q2IBA1\|CFTR_CHLAE Cystic fibrosis transmembrane conductance regulator OS=Chlorocebus aethiops GN=CFTR PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		205
357612899		979	putative ATP-dependent bile acid permeas	0.882	0.184	0.548	4e-51
118788044		1389	AGAP006427-PA [Anopheles gambiae str. PE	0.814	0.120	0.579	3e-50
118788046		1330	AGAP006427-PB [Anopheles gambiae str. PE	0.814	0.125	0.579	3e-50
307182688		1174	Probable multidrug resistance-associated	0.824	0.143	0.52	4e-49
170037039		1349	multidrug resistance-associated protein	0.814	0.123	0.574	8e-49
157136537		1311	ATP-dependent bile acid permease [Aedes	0.814	0.127	0.574	2e-48
194759400		2444	GF14687 [Drosophila ananassae] gi\|190615	0.780	0.065	0.579	4e-48
195115667		2297	GI13019 [Drosophila mojavensis] gi\|19391	0.814	0.072	0.553	9e-48
195147100		1367	GL18906 [Drosophila persimilis] gi\|19847	0.775	0.116	0.577	1e-47
345498054		1340	PREDICTED: probable multidrug resistance	0.780	0.119	0.537	2e-47

>gi\|357612899\|gb\|EHJ68225.1\| putative ATP-dependent bile acid permease [Danaus plexippus]	Back alignment and taxonomy information

 Score =  206 bits (525), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 114/208 (54%), Positives = 141/208 (67%), Gaps = 27/208 (12%)

Query: 2   PLTAPTACWALVALIVVDLLIDHQYDLAVQALGMELRVAGCSLIYRKALRLSKTALGDTT 61
           P  A     A+V    +++ + H Y +A+  +GM+ RVA CSLIYRK+LRLSKTALG+TT
Sbjct: 130 PQEAYMYAGAVVLCSALNVFVVHPYMMAILHMGMKFRVACCSLIYRKSLRLSKTALGETT 189

Query: 62  VGQVVNLLSNDVNRFDTACIFLHHL-INRL------------------LGAKKM------ 96
           +GQVVNLLSNDVNRFD A IFLH+L I  L                  +G   M      
Sbjct: 190 IGQVVNLLSNDVNRFDVAVIFLHYLWIGPLATVIVTYFMWLEISWAAVVGVGFMLAFIPL 249

Query: 97  --YLGKKTSELRLKTALRTDERVRLMNEIISGIQVIKMYAWERSFASMVRNARKKEIQQI 154
             YLGK+TS LRLKTA+RTDERVRLMNEI+SGIQVIKMY WE+ FA +V  ARK+EI+QI
Sbjct: 250 QAYLGKRTSVLRLKTAIRTDERVRLMNEILSGIQVIKMYTWEKPFADLVAKARKQEIKQI 309

Query: 155 RGSTYIKGVLLSFIIFHTRSIFIKNIKA 182
           R ++YI+GVL SFI+F TR   + +I A
Sbjct: 310 RATSYIRGVLTSFIMFTTRICLLVSILA 337

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|118788044\|ref\|XP_316463.3\| AGAP006427-PA [Anopheles gambiae str. PEST] gi\|116127089\|gb\|EAA10720.3\| AGAP006427-PA [Anopheles gambiae str. PEST]	Back alignment and taxonomy information

>gi\|118788046\|ref\|XP_557101.2\| AGAP006427-PB [Anopheles gambiae str. PEST] gi\|116127090\|gb\|EAL40076.2\| AGAP006427-PB [Anopheles gambiae str. PEST]	Back alignment and taxonomy information

>gi\|307182688\|gb\|EFN69813.1\| Probable multidrug resistance-associated protein lethal(2)03659 [Camponotus floridanus]	Back alignment and taxonomy information

>gi\|170037039\|ref\|XP_001846368.1\| multidrug resistance-associated protein 1 [Culex quinquefasciatus] gi\|167879996\|gb\|EDS43379.1\| multidrug resistance-associated protein 1 [Culex quinquefasciatus]	Back alignment and taxonomy information

>gi\|157136537\|ref\|XP_001656872.1\| ATP-dependent bile acid permease [Aedes aegypti] gi\|108869943\|gb\|EAT34168.1\| AAEL013567-PA, partial [Aedes aegypti]	Back alignment and taxonomy information

>gi\|194759400\|ref\|XP_001961937.1\| GF14687 [Drosophila ananassae] gi\|190615634\|gb\|EDV31158.1\| GF14687 [Drosophila ananassae]	Back alignment and taxonomy information

>gi\|195115667\|ref\|XP_002002378.1\| GI13019 [Drosophila mojavensis] gi\|193912953\|gb\|EDW11820.1\| GI13019 [Drosophila mojavensis]	Back alignment and taxonomy information

>gi\|195147100\|ref\|XP_002014518.1\| GL18906 [Drosophila persimilis] gi\|198473658\|ref\|XP_002132528.1\| GA25855 [Drosophila pseudoobscura pseudoobscura] gi\|194106471\|gb\|EDW28514.1\| GL18906 [Drosophila persimilis] gi\|198138053\|gb\|EDY69930.1\| GA25855 [Drosophila pseudoobscura pseudoobscura]	Back alignment and taxonomy information

>gi\|345498054\|ref\|XP_001600523.2\| PREDICTED: probable multidrug resistance-associated protein lethal(2)03659-like [Nasonia vitripennis]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		205
FB\|FBgn0032026		1355	CG7627 [Drosophila melanogaste	0.395	0.059	0.756	5.8e-47
FB\|FBgn0263316		1316	Mrp4 "Multidrug resistance pro	0.385	0.060	0.637	7.8e-39
FB\|FBgn0051793		1307	CG31793 [Drosophila melanogast	0.395	0.061	0.573	5.8e-38
UNIPROTKB\|F1M3F0		366	F1M3F0 "Uncharacterized protei	0.390	0.218	0.518	1.2e-37
FB\|FBgn0051792		1318	CG31792 [Drosophila melanogast	0.404	0.062	0.607	5.1e-37
FB\|FBgn0010549		1290	l(2)03659 "lethal (2) 03659" [	0.331	0.052	0.588	3e-35
UNIPROTKB\|F1RP57		542	LOC100152536 "Uncharacterized	0.307	0.116	0.650	4.9e-35
UNIPROTKB\|F1MUC1		1304	ABCC4 "Uncharacterized protein	0.390	0.061	0.506	1e-34
UNIPROTKB\|F1PNA2		1326	ABCC4 "Uncharacterized protein	0.390	0.060	0.518	1.4e-34
FB\|FBgn0032908		1225	CG9270 [Drosophila melanogaste	0.395	0.066	0.560	1.9e-33

FB\|FBgn0032026 CG7627 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

 Score = 291 (107.5 bits), Expect = 5.8e-47, Sum P(3) = 5.8e-47
 Identities = 62/82 (75%), Positives = 69/82 (84%)

Query:    97 YLGKKTSELRLKTALRTDERVRLMNEIISGIQVIKMYAWERSFASMVRNARKKEIQQIRG 156
             YLGK+TS LRL+TALRTDERVR+MNEIISGIQVIKMYAWE  F  MV  ARKKEI  IR 
Sbjct:   248 YLGKRTSVLRLRTALRTDERVRMMNEIISGIQVIKMYAWELPFEHMVAFARKKEINAIRH 307

Query:   157 STYIKGVLLSFIIFHTR-SIFI 177
              +YI+G+LLSFIIF TR SIF+
Sbjct:   308 VSYIRGILLSFIIFLTRVSIFL 329

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=ISS

GO:0008559 "xenobiotic-transporting ATPase activity" evidence=ISS

GO:0005215 "transporter activity" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0042060 "wound healing" evidence=IMP

FB\|FBgn0263316 Mrp4 "Multidrug resistance protein 4 ortholog" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

FB\|FBgn0051793 CG31793 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

UNIPROTKB\|F1M3F0 F1M3F0 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

FB\|FBgn0051792 CG31792 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

FB\|FBgn0010549 l(2)03659 "lethal (2) 03659" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RP57 LOC100152536 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MUC1 ABCC4 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PNA2 ABCC4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

FB\|FBgn0032908 CG9270 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		205
TIGR01271		1490	TIGR01271, CFTR_protein, cystic fibrosis transmemb	1e-21
TIGR00957		1522	TIGR00957, MRP_assoc_pro, multi drug resistance-as	4e-20
PLN03130		1622	PLN03130, PLN03130, ABC transporter C family membe	5e-17
PLN03232		1495	PLN03232, PLN03232, ABC transporter C family membe	5e-14
PTZ00243		1560	PTZ00243, PTZ00243, ABC transporter; Provisional	7e-12
pfam00664		274	pfam00664, ABC_membrane, ABC transporter transmemb	4e-08
COG1132		567	COG1132, MdlB, ABC-type multidrug transport system	0.004

>gnl\|CDD\|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR)	Back alignment and domain information

 Score = 91.9 bits (228), Expect = 1e-21
 Identities = 57/177 (32%), Positives = 87/177 (49%), Gaps = 27/177 (15%)

Query: 12  LVALIVVDLLIDHQYDLAVQALGMELRVAGCSLIYRKALRLSKTALGDTTVGQVVNLLSN 71
           L  L +V  L+ H     +  LGM++R+A  SLIY+K L+LS   L   + GQ+V+LLSN
Sbjct: 128 LCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLIYKKTLKLSSRVLDKISTGQLVSLLSN 187

Query: 72  DVNRFDTA-------------CIFLHHLINRL--------------LGAKKMYLGKKTSE 104
           ++N+FD                I L  LI  L              L   +  LG+K   
Sbjct: 188 NLNKFDEGLALAHFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQACLGQKMMP 247

Query: 105 LRLKTALRTDERVRLMNEIISGIQVIKMYAWERSFASMVRNARKKEIQQIRGSTYIK 161
            R K A +  ER+ + +EII  IQ +K Y WE +   +++N R+ E++  R   Y++
Sbjct: 248 YRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLR 304

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490

>gnl\|CDD\|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP)	Back alignment and domain information

>gnl\|CDD\|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional	Back alignment and domain information

>gnl\|CDD\|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional	Back alignment and domain information

>gnl\|CDD\|240327 PTZ00243, PTZ00243, ABC transporter; Provisional	Back alignment and domain information

>gnl\|CDD\|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region	Back alignment and domain information

>gnl\|CDD\|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		205
KOG0058\|consensus		716		100.0
COG2274		709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.96
KOG0055\|consensus		1228		99.95
KOG0054\|consensus		1381		99.95
TIGR00958		711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.95
TIGR02868		529	CydC thiol reductant ABC exporter, CydC subunit. T	99.94
PRK11160		574	cysteine/glutathione ABC transporter membrane/ATP-	99.94
TIGR03797		686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.94
TIGR02857		529	CydD thiol reductant ABC exporter, CydD subunit. U	99.94
TIGR03375		694	type_I_sec_LssB type I secretion system ATPase, Ls	99.94
TIGR01193		708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.94
TIGR01846		694	type_I_sec_HlyB type I secretion system ABC transp	99.93
PRK11174		588	cysteine/glutathione ABC transporter membrane/ATP-	99.93
PLN03232		1495	ABC transporter C family member; Provisional	99.93
TIGR03796		710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.93
KOG0055\|consensus		1228		99.93
PRK10789		569	putative multidrug transporter membrane\ATP-bindin	99.92
PLN03130		1622	ABC transporter C family member; Provisional	99.92
PRK11176		582	lipid transporter ATP-binding/permease protein; Pr	99.92
PTZ00265		1466	multidrug resistance protein (mdr1); Provisional	99.92
TIGR02203		571	MsbA_lipidA lipid A export permease/ATP-binding pr	99.92
TIGR00957		1522	MRP_assoc_pro multi drug resistance-associated pro	99.92
TIGR00957		1522	MRP_assoc_pro multi drug resistance-associated pro	99.91
TIGR02204		576	MsbA_rel ABC transporter, permease/ATP-binding pro	99.91
PTZ00265		1466	multidrug resistance protein (mdr1); Provisional	99.91
TIGR01192		585	chvA glucan exporter ATP-binding protein. This mod	99.91
PLN03130		1622	ABC transporter C family member; Provisional	99.91
COG4987		573	CydC ABC-type transport system involved in cytochr	99.91
PRK10790		592	putative multidrug transporter membrane\ATP-bindin	99.91
COG1132		567	MdlB ABC-type multidrug transport system, ATPase a	99.91
PLN03232		1495	ABC transporter C family member; Provisional	99.9
TIGR01271		1490	CFTR_protein cystic fibrosis transmembrane conduct	99.9
PRK13657		588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.9
TIGR01194		555	cyc_pep_trnsptr cyclic peptide transporter. This m	99.89
TIGR01842		544	type_I_sec_PrtD type I secretion system ABC transp	99.89
KOG0057\|consensus		591		99.89
COG4988		559	CydD ABC-type transport system involved in cytochr	99.88
PTZ00243		1560	ABC transporter; Provisional	99.88
PRK10522		547	multidrug transporter membrane component/ATP-bindi	99.87
KOG0054\|consensus		1381		99.87
TIGR01271		1490	CFTR_protein cystic fibrosis transmembrane conduct	99.87
PTZ00243		1560	ABC transporter; Provisional	99.85
PF00664		275	ABC_membrane: ABC transporter transmembrane region	99.83
TIGR00954		659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	99.82
KOG0056\|consensus		790		99.77
COG5265		497	ATM1 ABC-type transport system involved in Fe-S cl	99.64
COG4618		580	ArpD ABC-type protease/lipase transport system, AT	99.57
COG4615		546	PvdE ABC-type siderophore export system, fused ATP	99.51
COG4178		604	ABC-type uncharacterized transport system, permeas	98.64
KOG0060\|consensus		659		98.44
PF06472		281	ABC_membrane_2: ABC transporter transmembrane regi	98.16
PRK14257		329	phosphate ABC transporter ATP-binding protein; Pro	97.39
PRK13536		340	nodulation factor exporter subunit NodI; Provision	96.47
PRK14275		286	phosphate ABC transporter ATP-binding protein; Pro	96.44
PRK14254		285	phosphate ABC transporter ATP-binding protein; Pro	96.43
TIGR00767		415	rho transcription termination factor Rho. Members	96.35
KOG0064\|consensus		728		96.32
PRK14264		305	phosphate ABC transporter ATP-binding protein; Pro	96.19
PRK13549		506	xylose transporter ATP-binding subunit; Provisiona	95.88
PLN03073		718	ABC transporter F family; Provisional	95.61
TIGR03269		520	met_CoM_red_A2 methyl coenzyme M reductase system,	95.59
PLN03073		718	ABC transporter F family; Provisional	95.52
PRK15064		530	ABC transporter ATP-binding protein; Provisional	95.47
PRK10938		490	putative molybdenum transport ATP-binding protein	95.35
TIGR02633		500	xylG D-xylose ABC transporter, ATP-binding protein	95.13
TIGR03719		552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	95.01
PRK15134		529	microcin C ABC transporter ATP-binding protein Yej	94.99
COG0488		530	Uup ATPase components of ABC transporters with dup	94.98
PRK11819		556	putative ABC transporter ATP-binding protein; Revi	94.94
PRK10636		638	putative ABC transporter ATP-binding protein; Prov	94.88
PRK11147		635	ABC transporter ATPase component; Reviewed	94.78
PRK10261		623	glutathione transporter ATP-binding protein; Provi	94.65
cd03291		282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	93.67
TIGR00956		1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	93.14
TIGR01257		2272	rim_protein retinal-specific rim ABC transporter.	92.92
TIGR01257		2272	rim_protein retinal-specific rim ABC transporter.	92.05
COG1123		539	ATPase components of various ABC-type transport sy	91.71
KOG0927\|consensus		614		90.65
PRK10982		491	galactose/methyl galaxtoside transporter ATP-bindi	89.91
PRK09700		510	D-allose transporter ATP-binding protein; Provisio	89.36
PRK12369		326	putative transporter; Reviewed	86.3
PLN03140		1470	ABC transporter G family member; Provisional	85.91
PLN03211		659	ABC transporter G-25; Provisional	85.27
PRK13409		590	putative ATPase RIL; Provisional	83.84

>KOG0058\|consensus	Back alignment and domain information

Probab=100.00  E-value=6e-32  Score=210.58  Aligned_cols=199  Identities=13%  Similarity=0.177  Sum_probs=167.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCccccCCCChhhHHHHHHhhHHHHHHHHHHHhHH
Q psy12536          7 TACWALVALIVVDLLIDHQYDLAVQALGMELRVAGCSLIYRKALRLSKTALGDTTVGQVVNLLSNDVNRFDTACIFLHHL   86 (205)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~i~~~~~~d~~~l~~~~~~~~~~   86 (205)
                      -.+.++.+++++.+++.....++....+.++..++|.++|+++++++.+|||++++||++||++.|++.+.+.+......
T Consensus       189 ~~~~~l~~l~~~~a~~~~~r~~~~~~a~~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~  268 (716)
T KOG0058|consen  189 RACTILLGLFLIGALANAIRGGLLQYAGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSD  268 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHH
Confidence            35567778888999999999999999999999999999999999999999999999999999999999988776533221


Q ss_pred             ---------------------HHH-------HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHhhhHHH
Q psy12536         87 ---------------------INR-------LLGAKKMYLGKKTSELRLKTALRTDERVRLMNEIISGIQVIKMYAWERS  138 (205)
Q Consensus        87 ---------------------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~  138 (205)
                                           +..       +++++..++++..++..++.+++.++.++...|.++++||||+|+.|+.
T Consensus       269 ~lR~~~~~~g~~~~M~~~S~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~  348 (716)
T KOG0058|consen  269 GLRNLVQGFGGLGFMFSLSWRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQ  348 (716)
T ss_pred             HHHHHHHHHHhHHHHhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHH
Confidence                                 000       1111188899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---------------------------------------------
Q psy12536        139 FASMVRNARKKEIQQIRGSTYIKGVLLSFIIFHTR---------------------------------------------  173 (205)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------  173 (205)
                      ..+++.+..+...+..++.....+...+...+...                                             
T Consensus       349 E~~ry~~~l~~~~~i~~k~a~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~y  428 (716)
T KOG0058|consen  349 EVKRYNKKLREVLKLSKKEAVAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFY  428 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888887777777666666655555544333322                                             


Q ss_pred             ------------------------------------eEEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536        174 ------------------------------------SIFIKNIKAKWLPDQPDYTLNDITLDVKNAES  205 (205)
Q Consensus       174 ------------------------------------~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~  205 (205)
                                                          .|+|+||+|+||++|+.|||+|+||+|+|||+
T Consensus       429 s~lmkgvGAs~rvFel~dr~P~i~~~G~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~  496 (716)
T KOG0058|consen  429 SELMKGVGASERVFELMDRKPRIPLTGTLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEV  496 (716)
T ss_pred             HHHHHhcchHHHHHHHhccCCCCCCCCccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCE
Confidence                                                79999999999999999999999999999984

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]	Back alignment and domain information

>KOG0055\|consensus	Back alignment and domain information

>KOG0054\|consensus	Back alignment and domain information

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein	Back alignment and domain information

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit	Back alignment and domain information

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	Back alignment and domain information

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein	Back alignment and domain information

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit	Back alignment and domain information

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family	Back alignment and domain information

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter	Back alignment and domain information

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family	Back alignment and domain information

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	Back alignment and domain information

>PLN03232 ABC transporter C family member; Provisional	Back alignment and domain information

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein	Back alignment and domain information

>KOG0055\|consensus	Back alignment and domain information

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional	Back alignment and domain information

>PLN03130 ABC transporter C family member; Provisional	Back alignment and domain information

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional	Back alignment and domain information

>PTZ00265 multidrug resistance protein (mdr1); Provisional	Back alignment and domain information

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA	Back alignment and domain information

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)	Back alignment and domain information

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)	Back alignment and domain information

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein	Back alignment and domain information

>PTZ00265 multidrug resistance protein (mdr1); Provisional	Back alignment and domain information

>TIGR01192 chvA glucan exporter ATP-binding protein	Back alignment and domain information

>PLN03130 ABC transporter C family member; Provisional	Back alignment and domain information

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional	Back alignment and domain information

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	Back alignment and domain information

>PLN03232 ABC transporter C family member; Provisional	Back alignment and domain information

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)	Back alignment and domain information

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional	Back alignment and domain information

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter	Back alignment and domain information

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family	Back alignment and domain information

>KOG0057\|consensus	Back alignment and domain information

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PTZ00243 ABC transporter; Provisional	Back alignment and domain information

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional	Back alignment and domain information

>KOG0054\|consensus	Back alignment and domain information

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)	Back alignment and domain information

>PTZ00243 ABC transporter; Provisional	Back alignment and domain information

>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems	Back alignment and domain information

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei	Back alignment and domain information

>KOG0056\|consensus	Back alignment and domain information

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]	Back alignment and domain information

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]	Back alignment and domain information

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]	Back alignment and domain information

>KOG0060\|consensus	Back alignment and domain information

>PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems	Back alignment and domain information

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK13536 nodulation factor exporter subunit NodI; Provisional	Back alignment and domain information

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>TIGR00767 rho transcription termination factor Rho	Back alignment and domain information

>KOG0064\|consensus	Back alignment and domain information

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK13549 xylose transporter ATP-binding subunit; Provisional	Back alignment and domain information

>PLN03073 ABC transporter F family; Provisional	Back alignment and domain information

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2	Back alignment and domain information

>PLN03073 ABC transporter F family; Provisional	Back alignment and domain information

>PRK15064 ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional	Back alignment and domain information

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein	Back alignment and domain information

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family	Back alignment and domain information

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional	Back alignment and domain information

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	Back alignment and domain information

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed	Back alignment and domain information

>PRK10636 putative ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK11147 ABC transporter ATPase component; Reviewed	Back alignment and domain information

>PRK10261 glutathione transporter ATP-binding protein; Provisional	Back alignment and domain information

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1	Back alignment and domain information

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein	Back alignment and domain information

>TIGR01257 rim_protein retinal-specific rim ABC transporter	Back alignment and domain information

>TIGR01257 rim_protein retinal-specific rim ABC transporter	Back alignment and domain information

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	Back alignment and domain information

>KOG0927\|consensus	Back alignment and domain information

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK09700 D-allose transporter ATP-binding protein; Provisional	Back alignment and domain information

>PRK12369 putative transporter; Reviewed	Back alignment and domain information

>PLN03140 ABC transporter G family member; Provisional	Back alignment and domain information

>PLN03211 ABC transporter G-25; Provisional	Back alignment and domain information

>PRK13409 putative ATPase RIL; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		205
4f4c_A		1321	Multidrug resistance protein PGP-1; ABC transporte	99.96
4a82_A		578	Cystic fibrosis transmembrane conductance regulat;	99.95
3qf4_A		587	ABC transporter, ATP-binding protein; multidrug tr	99.95
3qf4_B		598	Uncharacterized ABC transporter ATP-binding prote	99.95
3b5x_A		582	Lipid A export ATP-binding/permease protein MSBA;	99.94
4f4c_A		1321	Multidrug resistance protein PGP-1; ABC transporte	99.94
2yl4_A		595	ATP-binding cassette SUB-family B member 10, mitoc	99.94
3b60_A		582	Lipid A export ATP-binding/permease protein MSBA;	99.94
3g5u_A		1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.93
3g5u_A		1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.88
3nh6_A		306	ATP-binding cassette SUB-family B member 6, mitoc;	97.89
2iw3_A		986	Elongation factor 3A; acetylation, ATP-binding, pr	96.17
2v9p_A		305	Replication protein E1; AAA+ molecular motor, DNA	95.0
2bbs_A		290	Cystic fibrosis transmembrane conductance regulato	94.53
3ice_A		422	Transcription termination factor RHO; transcriptio	91.24
2iw3_A		986	Elongation factor 3A; acetylation, ATP-binding, pr	90.68
3bk7_A		607	ABC transporter ATP-binding protein; ABC ATPase, i	84.74
2gza_A		361	Type IV secretion system protein VIRB11; ATPase, h	82.43

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}	Back alignment and structure

Probab=99.96  E-value=2.9e-28  Score=208.60  Aligned_cols=198  Identities=13%  Similarity=0.086  Sum_probs=156.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCccccCCCChhhHHHHHHhhHHHHHHHHHHH-hHH
Q psy12536          8 ACWALVALIVVDLLIDHQYDLAVQALGMELRVAGCSLIYRKALRLSKTALGDTTVGQVVNLLSNDVNRFDTACIFL-HHL   86 (205)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~i~~~~~~d~~~l~~~~~~~-~~~   86 (205)
                      +++.++++.+...++.++..++....+.++..++|.++|+|++++|++||+++++|++++++++|++.+++.+... ..+
T Consensus       138 ~~~~~~~l~i~~~~~~~~~~~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd~~~~G~l~sr~~~D~~~i~~~~~~~l~~~  217 (1321)
T 4f4c_A          138 VVWSYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFDTNHSGTLATKLFDNLERVKEGTGDKIGMA  217 (1321)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTCCTTHHHHHHHHHHHHHHTSSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555666677788888999999999999999999999999999999999999999999999999999988765321 111


Q ss_pred             ------------------HH-HHHH--------HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHhhhHHHH
Q psy12536         87 ------------------IN-RLLG--------AKKMYLGKKTSELRLKTALRTDERVRLMNEIISGIQVIKMYAWERSF  139 (205)
Q Consensus        87 ------------------~~-~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~  139 (205)
                                        |. +++.        ++...+.++.++..++..+..++..+.+.|.++|+++||+|++|+.+
T Consensus       218 ~~~~~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~  297 (1321)
T 4f4c_A          218 FQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYE  297 (1321)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccHHH
Confidence                              00 0000        11677888999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----------------------------------------------
Q psy12536        140 ASMVRNARKKEIQQIRGSTYIKGVLLSFIIFHTR----------------------------------------------  173 (205)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------  173 (205)
                      .+++.+..++..+...+......+......++..                                              
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~  377 (1321)
T 4f4c_A          298 LERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLA  377 (1321)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888777666655555544444333322222111                                              


Q ss_pred             -------------------------------------eEEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536        174 -------------------------------------SIFIKNIKAKWLPDQPDYTLNDITLDVKNAES  205 (205)
Q Consensus       174 -------------------------------------~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~  205 (205)
                                                           +|+|+||+|+||+++++|+|+|+||+|||||+
T Consensus       378 ~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~  446 (1321)
T 4f4c_A          378 VLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQT  446 (1321)
T ss_dssp             HHHHHHHHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCE
T ss_pred             HHHHHHHHHHHHHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcE
Confidence                                                 69999999999987788999999999999984

PyMOL of 4f4c

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A	Back alignment and structure

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}	Back alignment and structure

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}	Back alignment and structure

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}	Back alignment and structure

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}	Back alignment and structure

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A	Back alignment and structure

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*	Back alignment and structure

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*	Back alignment and structure

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*	Back alignment and structure

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A	Back alignment and structure

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*	Back alignment and structure

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*	Back alignment and structure

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A	Back alignment and structure

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A	Back alignment and structure

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*	Back alignment and structure

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		205
d2hyda2		323	Putative multidrug export ATP-binding/permease pro	99.8
d3b60a2		319	Multidrug resistance ABC transporter MsbA, N-termi	99.8
d1r0wa_		281	Cystic fibrosis transmembrane conductance regulato	95.84

>d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}	Back information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: ABC transporter transmembrane region
superfamily: ABC transporter transmembrane region
family: ABC transporter transmembrane region
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.80  E-value=5.9e-18  Score=123.74  Aligned_cols=157  Identities=17%  Similarity=0.141  Sum_probs=125.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCccccCCCChhhHHHHHHhhHHHHHHHHHHH-hHH--
Q psy12536         10 WALVALIVVDLLIDHQYDLAVQALGMELRVAGCSLIYRKALRLSKTALGDTTVGQVVNLLSNDVNRFDTACIFL-HHL--   86 (205)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~i~~~~~~d~~~l~~~~~~~-~~~--   86 (205)
                      +++++..++..++.+...+...+.+.++..++|.++++|++++|+++|+++++|++++++++|++.+.+.+... ...  
T Consensus        65 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~  144 (323)
T d2hyda2          65 IALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWL  144 (323)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhcccccccccccccccccccchhhhhhccchhhhhhhcch
Confidence            33445566788888889999999999999999999999999999999999999999999999999988776421 111  


Q ss_pred             -------------------------HHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHhhhHHHHHH
Q psy12536         87 -------------------------INRLLGAKKMYLGKKTSELRLKTALRTDERVRLMNEIISGIQVIKMYAWERSFAS  141 (205)
Q Consensus        87 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~  141 (205)
                                               ...+..++...+.++.++..++..+..++..+.+.|.++|+++||+|+.|+.+.+
T Consensus       145 ~~~~~i~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~  224 (323)
T d2hyda2         145 DCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAK  224 (323)
T ss_dssp             HHHHHHHHHHHHHHHCTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCCchhhhHhhhccchh
Confidence                                     0000011177888999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12536        142 MVRNARKKEIQQIRGSTYIKGVLLS  166 (205)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~  166 (205)
                      ++++..++..+...+..........
T Consensus       225 ~~~~~~~~~~~~~~k~~~~~~~~~~  249 (323)
T d2hyda2         225 NFDKKNTNFLTRALKHTRWNAYSFA  249 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcccccccchhhHHhhhhhhccc
Confidence            8887777666655555444444433

PyMOL of d2hyda2

>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure