Psyllid ID: psy12580

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------24
Protein Sequence
MYYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWLGLKTRSRDATLSRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVYIL
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHccHHHHHHHHHHcccccccccccccccHHHHHccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccEEEEccccccEEEEEEEcccEEEEEEEccccccHHHHHHHHHHHHHHHHcccccEEEEEEEEEccccEEEEEEEcccccHHHHHHccccccccHHHHHHHHHHHHHHHcHHHcccccccccccccccEEEEcc
Secondary Structure Prediction (SSPRO)
cEEccccccccccHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHHccHHHHHHHHHccccccccccccccccccccccccccccHHHccccHHHcccccEEccccccEEEEEEccccEEEEEEEccccccHHHHHHHHHHHHHHHHcccccEEEEEEEEccccccEEEEEEcccccHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccEEEcccccccEEEEcc
Coil and Loop (DISEMBL)
myyvsvtddhgfsplhwackEGHLKLVELLLQRGarvnatnrgddtplhLAAAHGHLDIVRLLAVQnnqdltkinfkdqswlglktrsrdatlsrhkgislndlslhtkissgpngdtwrgrwqkNDIVAKILAvrnctprvsrdfneefpklrifshpnvlpvigcvnsppdlVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVYIL
Flexible Loop (DISEMBL)
MYYVSVtddhgfspLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQdltkinfkdqswlglktrsrdatlsrhkgislndlslhtkissgpngdtwrgrWQKNDIVAKIlavrnctprvsrDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLEriipqyqlnsrhVMVYIL
Low Complexity Region (SEG)
MYYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWLGLKTRSRDATLSRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVYIL
Disordered region (IsUnstruct)
**YVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWLGLKTR**********GISLNDLSLHTKI****NGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVYI*
Disordered Region (DISOPRED)
*YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAH***********************************DATLSRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVYIL
Disordered Region (DISEMBL)
MYYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWLGLKTRSRDATLSRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVYIL
Disordered Region (DISPRO)
MYYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQ*********************SRDATLSRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVYIL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWLGLKTRSRDATLSRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVYIL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	239	2.2.26 [Sep-21-2011]
Q13418	452	Integrin-linked protein k	yes	N/A	0.958	0.506	0.437	4e-62
Q5R5V4	452	Integrin-linked protein k	yes	N/A	0.958	0.506	0.437	4e-62
P57044	451	Integrin-linked protein k	yes	N/A	0.958	0.507	0.434	1e-61
Q3SWY2	452	Integrin-linked protein k	yes	N/A	0.958	0.506	0.434	2e-61
Q99J82	452	Integrin-linked protein k	yes	N/A	0.958	0.506	0.430	3e-61
O55222	452	Integrin-linked protein k	yes	N/A	0.958	0.506	0.430	3e-61
Q59H18	835	Serine/threonine-protein	no	N/A	0.941	0.269	0.326	3e-23
Q5GIG6	834	Serine/threonine-protein	no	N/A	0.941	0.269	0.323	5e-22
Q7TQP6	835	Serine/threonine-protein	no	N/A	0.941	0.269	0.319	1e-21
Q5RF15	618	Serine/threonine-protein	no	N/A	0.912	0.352	0.332	2e-21

>sp|Q13418|ILK_HUMAN Integrin-linked protein kinase OS=Homo sapiens GN=ILK PE=1 SV=2

 Score =  238 bits (606), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 130/297 (43%), Positives = 173/297 (58%), Gaps = 68/297 (22%)

Query: 8   DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDT--------------------- 46
           DDHGFSPLHWAC+EG   +VE+L+ RGAR+N  NRGDDT                     
Sbjct: 31  DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYK 90

Query: 47  ------------PLHLAA------------AHGHL--------------------DIVRL 62
                       PLH A             A+G L                    +++R 
Sbjct: 91  ADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRE 150

Query: 63  LAVQNNQDLTKINFKDQSWLGL-KTRSRDATLSRHKGISLNDLSLHTKISSGPNGDTWRG 121
            A +  Q+L +I +KD  W G  +TR R+ TL++H GI    L+  TK++   +G+ W+G
Sbjct: 151 RAEKMGQNLNRIPYKDTFWKGTTRTRPRNGTLNKHSGIDFKQLNFLTKLNENHSGELWKG 210

Query: 122 RWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSP--PDLVVISQ 179
           RWQ NDIV K+L VR+ + R SRDFNEE P+LRIFSHPNVLPV+G   SP  P   +I+ 
Sbjct: 211 RWQGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLITH 270

Query: 180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
           +M +GSLY +LHEG   VVD +QA++FA+D+ARGMAFLH+LE +IP++ LNSR VM+
Sbjct: 271 WMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHTLEPLIPRHALNSRSVMI 327

Receptor-proximal protein kinase regulating integrin-mediated signal transduction. May act as a mediator of inside-out integrin signaling. Focal adhesion protein part of the complex ILK-PINCH. This complex is considered to be one of the convergence points of integrin- and growth factor-signaling pathway. Could be implicated in mediating cell architecture, adhesion to integrin substrates and anchorage-dependent growth in epithelial cells. Phosphorylates beta-1 and beta-3 integrin subunit on serine and threonine residues, but also AKT1 and GSK3B.
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q5R5V4|ILK_PONAB Integrin-linked protein kinase OS=Pongo abelii GN=ILK PE=2 SV=1

 Score =  237 bits (605), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 130/297 (43%), Positives = 173/297 (58%), Gaps = 68/297 (22%)

Query: 8   DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDT--------------------- 46
           DDHGFSPLHWAC+EG   +VE+L+ RGAR+N  NRGDDT                     
Sbjct: 31  DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYK 90

Query: 47  ------------PLHLAA------------AHGHL--------------------DIVRL 62
                       PLH A             A+G L                    +++R 
Sbjct: 91  ADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRE 150

Query: 63  LAVQNNQDLTKINFKDQSWLGL-KTRSRDATLSRHKGISLNDLSLHTKISSGPNGDTWRG 121
            A +  Q+L +I +KD  W G  +TR R+ TL++H GI    L+  TK++   +G+ W+G
Sbjct: 151 RAEKMGQNLNRIPYKDTFWKGTTRTRPRNGTLNKHSGIDFKQLNFLTKLNENHSGELWKG 210

Query: 122 RWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSP--PDLVVISQ 179
           RWQ NDIV K+L VR+ + R SRDFNEE P+LRIFSHPNVLPV+G   SP  P   +I+ 
Sbjct: 211 RWQGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLITH 270

Query: 180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
           +M +GSLY +LHEG   VVD +QA++FA+D+ARGMAFLH+LE +IP++ LNSR VM+
Sbjct: 271 WMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHTLEPLIPRHALNSRSVMI 327

Receptor-proximal protein kinase regulating integrin-mediated signal transduction. May act as a mediator of inside-out integrin signaling. Focal adhesion protein part of the complex ILK-PINCH. This complex is considered to be one of the convergence points of integrin- and growth factor-signaling pathway. Could be implicated in mediating cell architecture, adhesion to integrin substrates and anchorage-dependent growth in epithelial cells. Phosphorylates beta-1 and beta-3 integrin subunit on serine and threonine residues, but also AKT1 and GSK3B.

Pongo abelii (taxid: 9601)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P57044|ILK_CAVPO Integrin-linked protein kinase OS=Cavia porcellus GN=ILK PE=2 SV=1

 Score =  236 bits (601), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 129/297 (43%), Positives = 172/297 (57%), Gaps = 68/297 (22%)

Query: 8   DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDT--------------------- 46
           DDHGFSPLHWAC+EG   +VE+L+ RGAR+N  NRGDDT                     
Sbjct: 31  DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYK 90

Query: 47  ------------PLHLAA------------AHGHL--------------------DIVRL 62
                       PLH A             A+G L                    +++R 
Sbjct: 91  ADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPMDKAKAPLRELLRE 150

Query: 63  LAVQNNQDLTKINFKDQSWLGL-KTRSRDATLSRHKGISLNDLSLHTKISSGPNGDTWRG 121
            A +  Q+L +I +KD  W G  +TR R+ TL++H GI    L+   K++   +G+ W+G
Sbjct: 151 RAEKMGQNLNRIPYKDTFWKGTTRTRPRNGTLNKHSGIDFKQLNFLAKLNENHSGELWKG 210

Query: 122 RWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSP--PDLVVISQ 179
           RWQ NDIV K+L VR+ + R SRDFNEE P+LRIFSHPNVLPV+G   SP  P   +I+ 
Sbjct: 211 RWQGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLITH 270

Query: 180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
           +M +GSLY +LHEG   VVD +QA++FA+D+ARGMAFLH+LE +IP++ LNSR VM+
Sbjct: 271 WMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHTLEPLIPRHALNSRSVMI 327

Receptor-proximal protein kinase regulating integrin-mediated signal transduction. May act as a mediator of inside-out integrin signaling. Focal adhesion protein part of the complex ILK-PINCH. This complex is considered to be one of the convergence points of integrin- and growth factor-signaling pathway. Could be implicated in mediating cell architecture, adhesion to integrin substrates and anchorage-dependent growth in epithelial cells. Phosphorylates beta-1 and beta-3 integrin subunit on serine and threonine residues, but also AKT1 and GSK3B.

Cavia porcellus (taxid: 10141)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q3SWY2|ILK_BOVIN Integrin-linked protein kinase OS=Bos taurus GN=ILK PE=2 SV=1

 Score =  235 bits (599), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 129/297 (43%), Positives = 172/297 (57%), Gaps = 68/297 (22%)

Query: 8   DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDT--------------------- 46
           DDHGFSPLHWAC+EG   +VE+L+ RGAR+N  NRGDDT                     
Sbjct: 31  DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYK 90

Query: 47  ------------PLHLAA------------AHGHL--------------------DIVRL 62
                       PLH A             A+G L                    +++R 
Sbjct: 91  ADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKPPLRELLRE 150

Query: 63  LAVQNNQDLTKINFKDQSWLGL-KTRSRDATLSRHKGISLNDLSLHTKISSGPNGDTWRG 121
            A +  Q+L +I +KD  W G  +TR R+ TL++H GI    L+   K++   +G+ W+G
Sbjct: 151 RAEKMGQNLNRIPYKDTFWKGTTRTRPRNGTLNKHSGIDFKQLNFLAKLNENHSGELWKG 210

Query: 122 RWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSP--PDLVVISQ 179
           RWQ NDIV K+L VR+ + R SRDFNEE P+LRIFSHPNVLPV+G   SP  P   +I+ 
Sbjct: 211 RWQGNDIVVKMLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLITH 270

Query: 180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
           +M +GSLY +LHEG   VVD +QA++FA+D+ARGMAFLH+LE +IP++ LNSR VM+
Sbjct: 271 WMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHTLEPLIPRHALNSRSVMI 327

Receptor-proximal protein kinase regulating integrin-mediated signal transduction. May act as a mediator of inside-out integrin signaling. Focal adhesion protein part of the complex ILK-PINCH. This complex is considered to be one of the convergence points of integrin- and growth factor-signaling pathway. Could be implicated in mediating cell architecture, adhesion to integrin substrates and anchorage-dependent growth in epithelial cells. Phosphorylates beta-1 and beta-3 integrin subunit on serine and threonine residues, but also AKT1 and GSK3B.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q99J82|ILK_RAT Integrin-linked protein kinase OS=Rattus norvegicus GN=Ilk PE=2 SV=1

 Score =  234 bits (598), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 128/297 (43%), Positives = 172/297 (57%), Gaps = 68/297 (22%)

Query: 8   DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDT--------------------- 46
           DDHGFSPLHWAC+EG   +VE+L+ RGAR+N  NRGDDT                     
Sbjct: 31  DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYK 90

Query: 47  ------------PLHLAA------------AHGHL--------------------DIVRL 62
                       PLH A             A+G L                    +++R 
Sbjct: 91  ADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRE 150

Query: 63  LAVQNNQDLTKINFKDQSWLGL-KTRSRDATLSRHKGISLNDLSLHTKISSGPNGDTWRG 121
            A +  Q+L +I +KD  W G  +TR R+ TL++H GI    L+   K++   +G+ W+G
Sbjct: 151 RAEKMGQNLNRIPYKDTFWKGTTRTRPRNGTLNKHSGIDFKQLNFLAKLNENHSGELWKG 210

Query: 122 RWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSP--PDLVVISQ 179
           RWQ NDIV K+L VR+ + R SRDFNEE P+LRIFSHPNVLPV+G   +P  P   +I+ 
Sbjct: 211 RWQGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQAPPAPHPTLITH 270

Query: 180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
           +M +GSLY +LHEG   VVD +QA++FA+D+ARGMAFLH+LE +IP++ LNSR VM+
Sbjct: 271 WMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHTLEPLIPRHALNSRSVMI 327

Receptor-proximal protein kinase regulating integrin-mediated signal transduction. May act as a mediator of inside-out integrin signaling. Focal adhesion protein part of the complex ILK-PINCH. This complex is considered to be one of the convergence points of integrin- and growth factor-signaling pathway. Could be implicated in mediating cell architecture, adhesion to integrin substrates and anchorage-dependent growth in epithelial cells. Phosphorylates beta-1 and beta-3 integrin subunit on serine and threonine residues, but also AKT1 and GSK3B.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O55222|ILK_MOUSE Integrin-linked protein kinase OS=Mus musculus GN=Ilk PE=1 SV=2

 Score =  234 bits (598), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 128/297 (43%), Positives = 172/297 (57%), Gaps = 68/297 (22%)

Query: 8   DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDT--------------------- 46
           DDHGFSPLHWAC+EG   +VE+L+ RGAR+N  NRGDDT                     
Sbjct: 31  DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYK 90

Query: 47  ------------PLHLAA------------AHGHL--------------------DIVRL 62
                       PLH A             A+G L                    +++R 
Sbjct: 91  ADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRE 150

Query: 63  LAVQNNQDLTKINFKDQSWLGL-KTRSRDATLSRHKGISLNDLSLHTKISSGPNGDTWRG 121
            A +  Q+L +I +KD  W G  +TR R+ TL++H GI    L+   K++   +G+ W+G
Sbjct: 151 RAEKMGQNLNRIPYKDTFWKGTTRTRPRNGTLNKHSGIDFKQLNFLAKLNENHSGELWKG 210

Query: 122 RWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSP--PDLVVISQ 179
           RWQ NDIV K+L VR+ + R SRDFNEE P+LRIFSHPNVLPV+G   +P  P   +I+ 
Sbjct: 211 RWQGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQAPPAPHPTLITH 270

Query: 180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
           +M +GSLY +LHEG   VVD +QA++FA+D+ARGMAFLH+LE +IP++ LNSR VM+
Sbjct: 271 WMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHTLEPLIPRHALNSRSVMI 327

Receptor-proximal protein kinase regulating integrin-mediated signal transduction. May act as a mediator of inside-out integrin signaling. Focal adhesion protein part of the complex ILK-PINCH. This complex is considered to be one of the convergence points of integrin- and growth factor-signaling pathway. Could be implicated in mediating cell architecture, adhesion to integrin substrates and anchorage-dependent growth in epithelial cells. Phosphorylates beta-1 and beta-3 integrin subunit on serine and threonine residues, but also AKT1 and GSK3B.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q59H18|TNI3K_HUMAN Serine/threonine-protein kinase TNNI3K OS=Homo sapiens GN=TNNI3K PE=1 SV=3

 Score =  108 bits (270), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 85/260 (32%), Positives = 128/260 (49%), Gaps = 35/260 (13%)

Query: 11  GFSPLHWACKEGHLKLVELLLQRGARVN---------ATNRGDDTPLHLAAAHGHLDIVR 61
           G + LH AC  GH++LV+ LL  GA +N         +  + + T L  A   GH  IV 
Sbjct: 340 GHTGLHSACYHGHIRLVQFLLDNGADMNLVACDPSRSSGEKDEQTCLMWAYEKGHDAIVT 399

Query: 62  LLA-VQNNQDLTKINFKDQ-----------SWLG-LKTRSRD--------ATLSRHKGIS 100
           LL   +  QD    N   Q           S LG +K+ +++        A L  H  + 
Sbjct: 400 LLKHYKRPQDELPCNEYSQPGGDGSYVSVPSPLGKIKSMTKEKADILLLRAGLPSHFHLQ 459

Query: 101 LNDLSLHTKISSGPNGDTWRGRWQKNDIVA--KILAVRNCTPRVSRDFNEEFPKLRIFSH 158
           L+++  H  I SG  G  ++GR  +N IVA  +  A   C+      F  E   L   +H
Sbjct: 460 LSEIEFHEIIGSGSFGKVYKGRC-RNKIVAIKRYRANTYCSKSDVDMFCREVSILCQLNH 518

Query: 159 PNVLPVIG-CVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
           P V+  +G C+N P    +++QY++ GSL++LLHE   I+ D    L  AVDVA+GM +L
Sbjct: 519 PCVIQFVGACLNDPSQFAIVTQYISGGSLFSLLHEQKRIL-DLQSKLIIAVDVAKGMEYL 577

Query: 218 HSLERIIPQYQLNSRHVMVY 237
           H+L + I    LNS ++++Y
Sbjct: 578 HNLTQPIIHRDLNSHNILLY 597

May play a role in cardiac physiology.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q5GIG6|TNI3K_MOUSE Serine/threonine-protein kinase TNNI3K OS=Mus musculus GN=Tnni3k PE=2 SV=4

 Score =  104 bits (260), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 84/260 (32%), Positives = 127/260 (48%), Gaps = 35/260 (13%)

Query: 11  GFSPLHWACKEGHLKLVELLLQRGARVN---------ATNRGDDTPLHLAAAHGHLDIVR 61
           G + LH AC  GH++LV+ LL  GA +N         +  + + T L  A   GH  IV 
Sbjct: 339 GHTGLHSACYHGHIRLVQFLLDNGADMNLVACDPSRSSGEKDEQTCLMWAYEKGHDAIVT 398

Query: 62  LLA-VQNNQDLTKINFKDQ-----------SWLG-LKTRSRD--------ATLSRHKGIS 100
           LL   +  QD    N   Q           S LG +K+ +++        A L     + 
Sbjct: 399 LLKHYKRPQDELPCNEYSQPGGDGSYVSVPSPLGKIKSMTKEKADVLLLRAELPSRFHLQ 458

Query: 101 LNDLSLHTKISSGPNGDTWRGRWQKNDIVA--KILAVRNCTPRVSRDFNEEFPKLRIFSH 158
           L+++  H  I SG  G  ++GR  +N IVA  +  A   C+      F  E   L   +H
Sbjct: 459 LSEIEFHEIIGSGSFGKVYKGRC-RNKIVAIKRYRANTYCSKSDVDMFCREVSILCQLNH 517

Query: 159 PNVLPVIG-CVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
           P V+  +G C++ P    +++QY++ GSL++LLHE   I+ D    L  AVDVA+GM +L
Sbjct: 518 PCVVQFVGACLDDPSQFAIVTQYISGGSLFSLLHEQKRIL-DLQSKLIIAVDVAKGMEYL 576

Query: 218 HSLERIIPQYQLNSRHVMVY 237
           HSL + I    LNS ++++Y
Sbjct: 577 HSLTQPIIHRDLNSHNILLY 596

May play a role in cardiac physiology.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q7TQP6|TNI3K_RAT Serine/threonine-protein kinase TNNI3K OS=Rattus norvegicus GN=Tnni3k PE=2 SV=3

 Score =  103 bits (256), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/260 (31%), Positives = 127/260 (48%), Gaps = 35/260 (13%)

Query: 11  GFSPLHWACKEGHLKLVELLLQRGARVN---------ATNRGDDTPLHLAAAHGHLDIVR 61
           G + LH AC  GH++LV+ LL  GA +N         +  + + T L  A   GH  IV 
Sbjct: 340 GHTGLHSACYHGHIRLVQFLLDNGADMNLVACDPSRSSGEKDEQTCLMWAYEKGHDAIVT 399

Query: 62  LLA-VQNNQDLTKINFKDQ-----------SWLG-LKTRSRD--------ATLSRHKGIS 100
           LL   +  Q+    N   Q           S LG +K+ +++        A L     + 
Sbjct: 400 LLKHYKRPQEELPCNEYSQPGGDGSYVSVPSPLGKIKSMTKEKADVLLLRAELPSRFHLQ 459

Query: 101 LNDLSLHTKISSGPNGDTWRGRWQKNDIVA--KILAVRNCTPRVSRDFNEEFPKLRIFSH 158
           L+++  H  I SG  G  ++GR  +N IVA  +  A   C+      F  E   L   +H
Sbjct: 460 LSEIEFHEIIGSGSFGKVYKGRC-RNKIVAIKRYRANTYCSKSDVDMFCREVSILCQLNH 518

Query: 159 PNVLPVIG-CVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
           P V+  +G C++ P    +++QY++ GSL++LLHE   I+ D    L  AVDVA+GM +L
Sbjct: 519 PCVVQFVGACLDDPSQFAIVTQYISGGSLFSLLHEQKRIL-DLQSKLIIAVDVAKGMEYL 577

Query: 218 HSLERIIPQYQLNSRHVMVY 237
           HSL + I    LNS ++++Y
Sbjct: 578 HSLTQPIIHRDLNSHNILLY 597

May play a role in cardiac physiology.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q5RF15|TNI3K_PONAB Serine/threonine-protein kinase TNNI3K OS=Pongo abelii GN=TNNI3K PE=2 SV=3

 Score =  102 bits (255), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/253 (33%), Positives = 121/253 (47%), Gaps = 35/253 (13%)

Query: 11  GFSPLHWACKEGHLKLVELLLQRGARVN---------ATNRGDDTPLHLAAAHGHLDIVR 61
           G + LH AC  GH+ LV+ LL  GA +N         +  + + T L  A   GH  IV 
Sbjct: 340 GHTGLHSACYHGHIHLVQFLLDNGADMNLVACDPSRSSGEKDEQTCLMWAYEKGHDAIVT 399

Query: 62  LLA-VQNNQDLTKINFKDQ-----------SWLG-LKTRSRD--------ATLSRHKGIS 100
           LL   +  QD    N   Q           S LG +K+ +++        A L  H  + 
Sbjct: 400 LLKHYKRPQDELPCNEYSQPGGDGSYVSVPSPLGKIKSMTKEKADILLLRAGLPSHFHLQ 459

Query: 101 LNDLSLHTKISSGPNGDTWRGRWQKNDIVA--KILAVRNCTPRVSRDFNEEFPKLRIFSH 158
           L+++  H  I SG  G  ++GR  +N IVA  +  A   C+      F  E   L   +H
Sbjct: 460 LSEIEFHEIIGSGSFGKVYKGRC-RNKIVAIKRYRANTYCSKSDVDMFCREVSILCQLNH 518

Query: 159 PNVLPVIG-CVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
           P V+  +G C+N P    +++QY++ GSL++LLHE   I +D    L  AVDVARGM +L
Sbjct: 519 PCVIQFVGACLNDPSQFAIVTQYISGGSLFSLLHEQKRI-LDLQSKLIIAVDVARGMEYL 577

Query: 218 HSLERIIPQYQLN 230
           H+L + I    LN
Sbjct: 578 HNLTQPIIHRDLN 590

May play a role in cardiac physiology.

Pongo abelii (taxid: 9601)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	239
242023921	448	Integrin-linked protein kinase, putative	0.958	0.511	0.622	3e-96
193639989	448	PREDICTED: integrin-linked protein kinas	0.958	0.511	0.608	8e-95
170062766	448	integrin-linked protein kinase [Culex qu	0.958	0.511	0.585	1e-86
357621622	473	putative integrin-linked protein kinase	0.966	0.488	0.561	2e-86
157130008	448	integrin-linked protein kinase 2 (ilk-2)	0.958	0.511	0.585	5e-86
262305469	305	protein kinase [Acheta domesticus]	0.870	0.681	0.741	5e-86
91079909	448	PREDICTED: similar to integrin-linked pr	0.958	0.511	0.574	2e-85
289740545	448	integrin-linked kinase [Glossina morsita	0.974	0.520	0.560	8e-85
195126621	453	GI13131 [Drosophila mojavensis] gi|19391	0.974	0.514	0.557	9e-85
195379018	453	GJ13879 [Drosophila virilis] gi|19415543	0.974	0.514	0.553	1e-84

>gi|242023921|ref|XP_002432379.1| Integrin-linked protein kinase, putative [Pediculus humanus corporis] gi|212517802|gb|EEB19641.1| Integrin-linked protein kinase, putative [Pediculus humanus corporis]

 Score =  357 bits (915), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 183/294 (62%), Positives = 204/294 (69%), Gaps = 65/294 (22%)

Query: 8   DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDD---------------------- 45
           DDHG SPLHWA KEGH K+VELLLQRGARVNATNRGDD                      
Sbjct: 31  DDHGLSPLHWASKEGHAKIVELLLQRGARVNATNRGDDTALHLAAAHGHREIVHMLLKSR 90

Query: 46  -----------TPLHLAA-------------------------------AHGHL-DIVRL 62
                      +PLH A                                A GHL   +  
Sbjct: 91  ADVNFINEHGNSPLHYACFWGYQGIAEDLVAQGGLVSLANKDGDTPLDKARGHLAKTLHD 150

Query: 63  LAVQNNQDLTKINFKDQSWLGLKTRSRDATLSRHKGISLNDLSLHTKISSGPNGDTWRGR 122
           LAV+  QDL KI FKDQSWLGLKTRSRD TLSRH+GI++ DL+LHTKI+S P+GDTWRG+
Sbjct: 151 LAVETGQDLKKITFKDQSWLGLKTRSRDPTLSRHRGINIADLALHTKIASTPSGDTWRGK 210

Query: 123 WQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMA 182
           WQKND+VAKILAVR CTPR+SRDFNEEFPKLRIFSHPNVLPVIGC NSPP+LVVI+QYM 
Sbjct: 211 WQKNDVVAKILAVRECTPRISRDFNEEFPKLRIFSHPNVLPVIGCCNSPPNLVVINQYMP 270

Query: 183 WGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
           WGSLY LLHEGAG+VVD AQALRFAVD ARGMA+LHSLER+ PQ+ LNSRH+M+
Sbjct: 271 WGSLYTLLHEGAGVVVDMAQALRFAVDTARGMAYLHSLERLNPQFNLNSRHIMI 324

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193639989|ref|XP_001947936.1| PREDICTED: integrin-linked protein kinase-like [Acyrthosiphon pisum]

 Score =  352 bits (903), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 179/294 (60%), Positives = 205/294 (69%), Gaps = 65/294 (22%)

Query: 8   DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDT--------------------- 46
           DDHGFSPLHWA KEGHLK+VE+L+QRGAR+N+TNRGDDT                     
Sbjct: 31  DDHGFSPLHWAAKEGHLKIVEMLVQRGARINSTNRGDDTPLHLAAAHGHHEIVHLLLKNR 90

Query: 47  ------------PLHLAAAHGHLDI--------------------------------VRL 62
                       PLH A   G+  I                                ++ 
Sbjct: 91  ADINFTNEHGNTPLHYACFWGYEAIAEELIENGALAALANKDGDTPLDKGKGPILKHLKD 150

Query: 63  LAVQNNQDLTKINFKDQSWLGLKTRSRDATLSRHKGISLNDLSLHTKISSGPNGDTWRGR 122
           LA+Q+ QDLTKINFKDQSWLGLKTRSRDATLSRHKGI+L+DL LHTK+++ P+G+TWRG 
Sbjct: 151 LALQSGQDLTKINFKDQSWLGLKTRSRDATLSRHKGINLSDLYLHTKMATSPSGETWRGH 210

Query: 123 WQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMA 182
           WQKNDIVAK+LAVR CTPR+SRDFNEEFPKLRIFSHPNVLPVIGC NSPP+LVVISQYM 
Sbjct: 211 WQKNDIVAKVLAVRQCTPRISRDFNEEFPKLRIFSHPNVLPVIGCCNSPPNLVVISQYMP 270

Query: 183 WGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
           WGSL+ LLHEGA + VD A ALR AVDV+R MAFLHSLERIIPQ+ LNS H+M+
Sbjct: 271 WGSLHTLLHEGARVTVDTALALRLAVDVSRAMAFLHSLERIIPQFHLNSHHIMI 324

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170062766|ref|XP_001866812.1| integrin-linked protein kinase [Culex quinquefasciatus] gi|167880577|gb|EDS43960.1| integrin-linked protein kinase [Culex quinquefasciatus]

 Score =  325 bits (832), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 172/294 (58%), Positives = 194/294 (65%), Gaps = 65/294 (22%)

Query: 8   DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDD---------------------- 45
           DDHGFSPLHW  KEGH KLVE+LL RGARVNATN GDD                      
Sbjct: 31  DDHGFSPLHWCAKEGHTKLVEMLLHRGARVNATNMGDDIPLHLAAAHGHLEIVQMLVRHR 90

Query: 46  -----------TPLHLAAAHGHLDI------------------------------VRL-- 62
                      TPLH A   G+  I                               RL  
Sbjct: 91  SDVNAANEHGNTPLHYACFWGYQPIAEELVSNGALVSLANKDGDTPLDKAKASVATRLHN 150

Query: 63  LAVQNNQDLTKINFKDQSWLGLKTRSRDATLSRHKGISLNDLSLHTKISSGPNGDTWRGR 122
           LAV++ Q+L KI+FKDQSWLG+KTRSRDATLSR KGI++ DL LHTK++  P G+TWRGR
Sbjct: 151 LAVESGQELKKISFKDQSWLGMKTRSRDATLSRFKGINIQDLMLHTKLAITPGGETWRGR 210

Query: 123 WQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMA 182
           WQ NDIVAKILA+R C  RVSRDFNEEFPKLRIFSHPN+LPVIG  N+PP L+VISQYM 
Sbjct: 211 WQNNDIVAKILAIRECNARVSRDFNEEFPKLRIFSHPNILPVIGACNAPPRLIVISQYMP 270

Query: 183 WGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
            GSLY LLH  AGIVVD AQA+RFA+D+ARGMA+LHSLERIIP+Y LNS HVM+
Sbjct: 271 RGSLYDLLHGAAGIVVDTAQAVRFALDIARGMAYLHSLERIIPEYHLNSFHVMI 324

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357621622|gb|EHJ73397.1| putative integrin-linked protein kinase [Danaus plexippus]

 Score =  324 bits (830), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 168/299 (56%), Positives = 200/299 (66%), Gaps = 68/299 (22%)

Query: 8   DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDT--------------------- 46
           DDHGFSPLHWACKEGHLK+VE+L++RGAR+N TN GDDT                     
Sbjct: 31  DDHGFSPLHWACKEGHLKIVEMLIKRGARINVTNMGDDTPLHLSAAHGHRPIVQLLLQNR 90

Query: 47  ------------PLHLAAAHGH------------------------LDIVR--------L 62
                       PLH A   G+                        LD  R         
Sbjct: 91  VDVNFTNEHGNSPLHYACFWGYSAIAEDLVLSGALVSLANKDGDTPLDKTRGQLVQRLHE 150

Query: 63  LAVQNNQDLTKINFKDQSWLGLKTRSRDATLSRHKGISLNDLSLHTKISSGPNGDTWRGR 122
           LAV   QDL KI F D+SWLGLKTRSRDATLSRHKGI++++L+LHT+I+  P+G+TWRGR
Sbjct: 151 LAVNQGQDLKKIQFIDRSWLGLKTRSRDATLSRHKGINISELALHTRIAVTPSGETWRGR 210

Query: 123 WQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMA 182
           WQKNDIVAKI+AVR CTPR+ RDFNEEFPKLRIFSHPN+LPV+GC  SPP LVVISQYM+
Sbjct: 211 WQKNDIVAKIIAVRECTPRIQRDFNEEFPKLRIFSHPNILPVVGCCVSPPSLVVISQYMS 270

Query: 183 WGSLYALLHEGAG-IVVDFAQALRFAVDVARGMAFLHSLE--RIIPQYQLNSRHVMVYI 238
           WGSL+ALLH+G G ++VD   A+R A DVA GMA+LHSL+  R++PQY LNSRH+MV +
Sbjct: 271 WGSLHALLHDGGGRVLVDAGAAVRLARDVAAGMAYLHSLQRDRVLPQYHLNSRHIMVSV 329

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157130008|ref|XP_001655514.1| integrin-linked protein kinase 2 (ilk-2) [Aedes aegypti] gi|108884397|gb|EAT48622.1| AAEL000378-PA [Aedes aegypti]

 Score =  323 bits (827), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 172/294 (58%), Positives = 194/294 (65%), Gaps = 65/294 (22%)

Query: 8   DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDD---------------------- 45
           DDHGFSPLHW  KEGH KLVE+LL RGARVNATN GDD                      
Sbjct: 31  DDHGFSPLHWCAKEGHTKLVEMLLHRGARVNATNMGDDIPLHLAAAHGHLEIVQMLIRFR 90

Query: 46  -----------TPLHLAAAHGHLDI------------------------------VRL-- 62
                      TPLH A   G+  I                               RL  
Sbjct: 91  SDVNAANEHGNTPLHYACFWGYQPIAEELVNNGALVSLANKDGDTPLDKAKAQLATRLHN 150

Query: 63  LAVQNNQDLTKINFKDQSWLGLKTRSRDATLSRHKGISLNDLSLHTKISSGPNGDTWRGR 122
           LAV++ Q+L KI+FKDQSWLGLKTRSRDATLSR+KGI++ DL LHTK++    G+TWRGR
Sbjct: 151 LAVESGQELKKISFKDQSWLGLKTRSRDATLSRYKGINIQDLMLHTKLAITAGGETWRGR 210

Query: 123 WQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMA 182
           WQ NDIVAKILA+R C  RVSRDFNEEFPKLRIFSHPN+LPVIG  N+PP L+VISQYM 
Sbjct: 211 WQNNDIVAKILAIRECNARVSRDFNEEFPKLRIFSHPNILPVIGACNAPPRLIVISQYMP 270

Query: 183 WGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
            GSLY LLH  AGIVVD AQA+RFA+D+ARGMA+LHSLERIIP+Y LNS HVM+
Sbjct: 271 RGSLYDLLHGAAGIVVDTAQAVRFALDIARGMAYLHSLERIIPEYHLNSCHVMI 324

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|262305469|gb|ACY45327.1| protein kinase [Acheta domesticus]

 Score =  323 bits (827), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 158/213 (74%), Positives = 181/213 (84%), Gaps = 5/213 (2%)

Query: 26  LVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRL--LAVQNNQDLTKINFKDQSWLG 83
           + E L+  GA V+  N+  DTPL    A G L   RL  LAV+  QDL KINFKDQSWLG
Sbjct: 4   IAEDLIHNGALVSLANKDGDTPLD--KARGIL-AKRLHDLAVETGQDLKKINFKDQSWLG 60

Query: 84  LKTRSRDATLSRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVS 143
           LKTRSRDATLSRHKGI+++DL+LHTKI++ P+G+TWRGRWQKN+IVAKILA+R CT R+S
Sbjct: 61  LKTRSRDATLSRHKGINISDLALHTKIATSPSGETWRGRWQKNEIVAKILALRECTSRIS 120

Query: 144 RDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQA 203
           RDFNEEFPKLRIFSHPNVLPV+GC NSPP+LVVI+QYM WGSLY LLHEG G+VVD AQA
Sbjct: 121 RDFNEEFPKLRIFSHPNVLPVVGCCNSPPNLVVINQYMPWGSLYTLLHEGTGVVVDTAQA 180

Query: 204 LRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
           LRFA+D+ARGMAFLHSLERIIPQY LNSRHVM+
Sbjct: 181 LRFALDIARGMAFLHSLERIIPQYHLNSRHVMM 213

Source: Acheta domesticus

Species: Acheta domesticus

Genus: Acheta

Family: Gryllidae

Order: Orthoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91079909|ref|XP_966719.1| PREDICTED: similar to integrin-linked protein kinase 2 (ilk-2) [Tribolium castaneum] gi|270003268|gb|EEZ99715.1| hypothetical protein TcasGA2_TC002476 [Tribolium castaneum]

 Score =  321 bits (822), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 169/294 (57%), Positives = 195/294 (66%), Gaps = 65/294 (22%)

Query: 8   DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDT--------------------- 46
           DDHGFSPLHWA K GH K+VE+LL RGARVNATNRGDDT                     
Sbjct: 31  DDHGFSPLHWAAKRGHTKIVEMLLLRGARVNATNRGDDTPLHLAAAHGHREIVLMLLRQR 90

Query: 47  ------------PLHLAAAHGHLDIVRLL------------------------------- 63
                       PLH A   G+ +I   L                               
Sbjct: 91  ADVNFTNEHGNTPLHYACFWGYREIAEDLVHHDAKVSLANKYGDTPLDKARGNLAKILHD 150

Query: 64  -AVQNNQDLTKINFKDQSWLGLKTRSRDATLSRHKGISLNDLSLHTKISSGPNGDTWRGR 122
            AV++ QDL KI FKDQSWLGLKTRSRDATLSRHKGI++ +L    +I+S P+G T+RG 
Sbjct: 151 MAVESGQDLKKIIFKDQSWLGLKTRSRDATLSRHKGINIKELHQREEIASTPSGVTYRGT 210

Query: 123 WQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMA 182
           WQKND+VAKIL +R  T R+SRDFNEEFPKLRIFSHPN+LPVIGC NSPP L+VISQYM 
Sbjct: 211 WQKNDVVAKILNIREVTSRISRDFNEEFPKLRIFSHPNILPVIGCCNSPPYLIVISQYMP 270

Query: 183 WGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
            GSLY +LHE +GIVVD AQALRFAVD+ARGMA+LHSLERIIP+Y+LNSRHV++
Sbjct: 271 LGSLYNVLHESSGIVVDNAQALRFAVDIARGMAYLHSLERIIPEYRLNSRHVII 324

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289740545|gb|ADD19020.1| integrin-linked kinase [Glossina morsitans morsitans]

 Score =  318 bits (816), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 167/298 (56%), Positives = 196/298 (65%), Gaps = 65/298 (21%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDD------------------ 45
           +++ DDHGFSPLHW  KEGH KLVE LLQRGARVNATN GDD                  
Sbjct: 27  MNLGDDHGFSPLHWCAKEGHSKLVETLLQRGARVNATNMGDDIPLHLAAAHGHRDVVQML 86

Query: 46  ---------------TPLHLAAAHGH----LDIV-------------------------- 60
                          TPLH     G+     D+V                          
Sbjct: 87  LKERSDVNAVNEHGNTPLHYGCFWGYDMICEDLVNAGALVTIANKDDDTPLDKAKPSLAK 146

Query: 61  RL--LAVQNNQDLTKINFKDQSWLGLKTRSRDATLSRHKGISLNDLSLHTKISSGPNGDT 118
           RL  LA +N Q++ KI+FK+QSWLG KTRSRDATLSR KGIS+ DL LHTKI+  P+G+T
Sbjct: 147 RLEDLAERNGQEMKKISFKEQSWLGFKTRSRDATLSRFKGISMGDLDLHTKIAVTPSGET 206

Query: 119 WRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVIS 178
           WRGRWQKND++AKIL VR C+ RVSRDFNEEFPKLRIFSHPN+LP+IG  NSPP+L+ IS
Sbjct: 207 WRGRWQKNDVIAKILTVRQCSSRVSRDFNEEFPKLRIFSHPNILPIIGACNSPPNLITIS 266

Query: 179 QYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
           QYM  GSL+ LLH   G+VVD +QA+RFA+D+ARGMA+LHSLERIIP Y LNS HVM+
Sbjct: 267 QYMPRGSLFNLLHAATGVVVDTSQAVRFALDIARGMAYLHSLERIIPSYHLNSHHVMI 324

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195126621|ref|XP_002007769.1| GI13131 [Drosophila mojavensis] gi|193919378|gb|EDW18245.1| GI13131 [Drosophila mojavensis]

 Score =  318 bits (816), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 166/298 (55%), Positives = 198/298 (66%), Gaps = 65/298 (21%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDD------------------ 45
           +++ DDHGFSPLHW  KEGH KLVE LLQRGARVNATN GDD                  
Sbjct: 27  MNLGDDHGFSPLHWVAKEGHAKLVETLLQRGARVNATNMGDDIPLHLAAAHGHREVVQML 86

Query: 46  ---------------TPLH----------------------LAAAHGHLDI--------- 59
                          TPLH                      +A   GH  I         
Sbjct: 87  LRERSDVNAVNEHGNTPLHYACFWGYDMICEDLLNAGALVSIANKDGHTAIDKAKPSLGK 146

Query: 60  -VRLLAVQNNQDLTKINFKDQSWLGLKTRSRDATLSRHKGISLNDLSLHTKISSGPNGDT 118
            ++ LA ++ Q+L  I+FK+QSW+G+KTRSRDATLSR KGISL DL LHTKI+  P+G+T
Sbjct: 147 RIQDLAEKSGQELKIISFKEQSWMGMKTRSRDATLSRFKGISLGDLDLHTKIAVTPSGET 206

Query: 119 WRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVIS 178
           WRGRWQKND+VAKILA+R CT R+SRDFNEEFPKLRIFSHPN+LP+IG  NSPP+LVVIS
Sbjct: 207 WRGRWQKNDVVAKILALRQCTSRISRDFNEEFPKLRIFSHPNILPIIGACNSPPNLVVIS 266

Query: 179 QYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
           Q+M   SL+ LLH  +G+VVD +QA+RFA+D+ARGMA+LHSLERIIP Y LNS HVM+
Sbjct: 267 QFMPRSSLFNLLHGASGVVVDTSQAVRFALDIARGMAYLHSLERIIPTYHLNSHHVMI 324

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195379018|ref|XP_002048278.1| GJ13879 [Drosophila virilis] gi|194155436|gb|EDW70620.1| GJ13879 [Drosophila virilis]

 Score =  318 bits (816), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 165/298 (55%), Positives = 197/298 (66%), Gaps = 65/298 (21%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDD------------------ 45
           +++ DDHGFSPLHW  KEGH KLVE LLQRGARVNATN GDD                  
Sbjct: 27  MNLGDDHGFSPLHWVAKEGHAKLVETLLQRGARVNATNMGDDIPLHLAAAHGHRDVVQML 86

Query: 46  ---------------TPLH----------------------LAAAHGHLDI--------- 59
                          TPLH                      +A   GH  I         
Sbjct: 87  LRERSDVNAVNEHGNTPLHYACFWGYDMICEDLLSAGALVSIANKDGHTPIDKAKPSLGK 146

Query: 60  -VRLLAVQNNQDLTKINFKDQSWLGLKTRSRDATLSRHKGISLNDLSLHTKISSGPNGDT 118
            ++ LA ++ Q++  I+FK+QSWLG+KTRSRDATLSR KGIS+ DL LHTKIS  P+G+T
Sbjct: 147 RIQDLAEKSGQEMKVISFKEQSWLGMKTRSRDATLSRFKGISMGDLDLHTKISVTPSGET 206

Query: 119 WRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVIS 178
           WRGRWQKND++AKIL VR CT R+SRDFNEEFPKLRIFSHPN+LP+IG  NSPP+LVVIS
Sbjct: 207 WRGRWQKNDVIAKILVVRQCTSRISRDFNEEFPKLRIFSHPNILPIIGACNSPPNLVVIS 266

Query: 179 QYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
           Q+M   SL+ LLH  +G+VVD +QA+RFA+D+ARGMA+LHSLERIIP Y LNS HVM+
Sbjct: 267 QFMPRSSLFNLLHGASGVVVDTSQAVRFALDIARGMAYLHSLERIIPTYHLNSHHVMI 324

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	239
FB|FBgn0028427	448	Ilk "Integrin linked kinase" [	0.970	0.517	0.618	1.1e-73
UNIPROTKB|B7Z418	391	ILK "cDNA FLJ50979, moderately	0.949	0.580	0.525	3.1e-60
WB|WBGene00003931	466	pat-4 [Caenorhabditis elegans	0.974	0.5	0.472	4e-58
UNIPROTKB|Q9TZC4	466	pat-4 "Protein PAT-4" [Caenorh	0.974	0.5	0.472	4e-58
UNIPROTKB|F1NP98	422	ILK "Uncharacterized protein"	0.970	0.549	0.495	5.9e-57
UNIPROTKB|Q13418	452	ILK "Integrin-linked protein k	0.970	0.513	0.474	2.6e-54
UNIPROTKB|I3L9C8	452	ILK "Uncharacterized protein"	0.970	0.513	0.474	4.3e-54
UNIPROTKB|E2R5H4	452	ILK "Uncharacterized protein"	0.970	0.513	0.470	8.9e-54
MGI|MGI:1195267	452	Ilk "integrin linked kinase" [	0.970	0.513	0.466	1.9e-53
RGD|620063	452	Ilk "integrin-linked kinase" [	0.970	0.513	0.466	1.9e-53

FB|FBgn0028427 Ilk "Integrin linked kinase" [Drosophila melanogaster (taxid:7227)]

 Score = 744 (267.0 bits), Expect = 1.1e-73, P = 1.1e-73
 Identities = 144/233 (61%), Positives = 179/233 (76%)

Query:     4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
             V+  ++HG +PLH+AC  G+  + E LL  GA+V   N+   TPL  A        ++ L
Sbjct:    93 VNAVNEHGNTPLHYACFWGYDMICEDLLNAGAQVGIANKDGHTPLEKAKP-SLAKRLQDL 151

Query:    64 AVQNNQDLTKINFKDQSWLGLKTRSRDATLSRHKGISLNDLSLHTKISSGPNGDTWRGRW 123
               ++ +++  I+FK+QSW GLKTRSRDATLSR KGIS+ DL LHTK+S  P+G+TWRGRW
Sbjct:   152 VEKSGREVKVISFKEQSWQGLKTRSRDATLSRFKGISMGDLDLHTKLSVTPSGETWRGRW 211

Query:   124 QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAW 183
             QKND+VAKILAVR CTPR+SRDFNEEFPKLRIFSHPN+LP+IG  NSPP+LV ISQ+M  
Sbjct:   212 QKNDVVAKILAVRQCTPRISRDFNEEFPKLRIFSHPNILPIIGACNSPPNLVTISQFMPR 271

Query:   184 GSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
              SL++LLH   G+VVD +QA+ FA+DVARGMAFLHSLERIIP Y LNS HVM+
Sbjct:   272 LSLFSLLHGATGVVVDTSQAVSFALDVARGMAFLHSLERIIPTYHLNSHHVMI 324

GO:0007229 "integrin-mediated signaling pathway" evidence=ISS;IMP

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005925 "focal adhesion" evidence=ISS

GO:0007016 "cytoskeletal anchoring at plasma membrane" evidence=ISS

GO:0006468 "protein phosphorylation" evidence=IKR;NAS

GO:0004672 "protein kinase activity" evidence=IKR;NAS

GO:0016203 "muscle attachment" evidence=IMP

GO:0007475 "apposition of dorsal and ventral imaginal disc-derived wing surfaces" evidence=IMP

GO:0007160 "cell-matrix adhesion" evidence=IMP

GO:0007155 "cell adhesion" evidence=TAS

GO:0005524 "ATP binding" evidence=IEA

GO:0009966 "regulation of signal transduction" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|B7Z418 ILK "cDNA FLJ50979, moderately similar to Integrin-linked protein kinase (EC 2.7.11.1)" [Homo sapiens (taxid:9606)]

 Score = 617 (222.3 bits), Expect = 3.1e-60, P = 3.1e-60
 Identities = 125/238 (52%), Positives = 164/238 (68%)

Query:     8 DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQN 67
             DDHGFSPLHWAC+EG   +VE+L+ RGAR+N  NRGDDTPLHLAA+HGH DIV+ L +Q 
Sbjct:    31 DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKL-LQY 89

Query:    68 NQDLTKINFKDQSWLGLKT---RSRDATLSRHKGISLNDLSLHTKISSGPN----GDTWR 120
               D+  +N      L       + + A   + +   ++ +  HT+  SG      G  W+
Sbjct:    90 KADINAVNEHGNVPLHYACFWGQDQVAESGQRRWARISTV-FHTRTHSGRGPPALGPLWK 148

Query:   121 GRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP--DLVVIS 178
             GRWQ NDIV K+L VR+ + R SRDFNEE P+LRIFSHPNVLPV+G   SPP     +I+
Sbjct:   149 GRWQGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLIT 208

Query:   179 QYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
              +M +GSLY +LHEG   VVD +QA++FA+D+ARGMAFLH+LE +IP++ LNSR VM+
Sbjct:   209 HWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHTLEPLIPRHALNSRSVMI 266

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007229 "integrin-mediated signaling pathway" evidence=IEA

WB|WBGene00003931 pat-4 [Caenorhabditis elegans (taxid:6239)]

 Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
 Identities = 110/233 (47%), Positives = 163/233 (69%)

Query:     4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
             V+ T++HG +PLH+AC  G+ ++ E L+  GA VN  N+   TPL +        I+ + 
Sbjct:   110 VNATNEHGMTPLHYACFWGYEQIAEDLISCGAAVNVCNKKGMTPLDVCQPMCKNTILEIA 169

Query:    64 AVQNNQDLTKINFKDQSWLGLKTRSRDATLSRHKGISLNDLSLHTKISSGPNGDTWRGRW 123
                      ++ FKD +W G K+R+RDATLSR+ G+ ++ L+L TKI+   +G+ WRG+W
Sbjct:   170 QEHGQSPNDRVPFKDTTWKGTKSRTRDATLSRYTGVDVSSLNLITKIAESHSGELWRGKW 229

Query:   124 QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAW 183
             Q NDIVA+IL V+  T R+SRDF  EFP LRIF+HPN+  V+   N PP+LV+ISQYM +
Sbjct:   230 QGNDIVARILNVQEVTARISRDFQTEFPALRIFAHPNICAVLAAANQPPNLVIISQYMPF 289

Query:   184 GSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
             GSLY +LHE + +V+D  QA+RFA+D+ARGM++LHSL+ ++ ++ L+S+HV+V
Sbjct:   290 GSLYNVLHEQSSVVIDHGQAVRFALDIARGMSYLHSLDPMLLRFYLSSKHVVV 342

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0009966 "regulation of signal transduction" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0061199 "striated muscle contraction involved in embryonic body morphogenesis" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0071688 "striated muscle myosin thick filament assembly" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0007229 "integrin-mediated signaling pathway" evidence=IGI

GO:0030239 "myofibril assembly" evidence=IMP

GO:0005912 "adherens junction" evidence=IDA

GO:0008305 "integrin complex" evidence=IDA

GO:0005178 "integrin binding" evidence=TAS

GO:0055120 "striated muscle dense body" evidence=IDA

GO:0031430 "M band" evidence=IDA

UNIPROTKB|Q9TZC4 pat-4 "Protein PAT-4" [Caenorhabditis elegans (taxid:6239)]

 Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
 Identities = 110/233 (47%), Positives = 163/233 (69%)

Query:     4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
             V+ T++HG +PLH+AC  G+ ++ E L+  GA VN  N+   TPL +        I+ + 
Sbjct:   110 VNATNEHGMTPLHYACFWGYEQIAEDLISCGAAVNVCNKKGMTPLDVCQPMCKNTILEIA 169

Query:    64 AVQNNQDLTKINFKDQSWLGLKTRSRDATLSRHKGISLNDLSLHTKISSGPNGDTWRGRW 123
                      ++ FKD +W G K+R+RDATLSR+ G+ ++ L+L TKI+   +G+ WRG+W
Sbjct:   170 QEHGQSPNDRVPFKDTTWKGTKSRTRDATLSRYTGVDVSSLNLITKIAESHSGELWRGKW 229

Query:   124 QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAW 183
             Q NDIVA+IL V+  T R+SRDF  EFP LRIF+HPN+  V+   N PP+LV+ISQYM +
Sbjct:   230 QGNDIVARILNVQEVTARISRDFQTEFPALRIFAHPNICAVLAAANQPPNLVIISQYMPF 289

Query:   184 GSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
             GSLY +LHE + +V+D  QA+RFA+D+ARGM++LHSL+ ++ ++ L+S+HV+V
Sbjct:   290 GSLYNVLHEQSSVVIDHGQAVRFALDIARGMSYLHSLDPMLLRFYLSSKHVVV 342

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F1NP98 ILK "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 586 (211.3 bits), Expect = 5.9e-57, P = 5.9e-57
 Identities = 117/236 (49%), Positives = 162/236 (68%)

Query:     4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
             ++  ++HG +PLH+AC  GH  + E L+  GA V+  N+  +TP+  A      +I++  
Sbjct:    63 INAVNEHGNTPLHYACFWGHDTVAEDLVGNGALVSIANKYSETPIDKAKMPLR-EILKER 121

Query:    64 AVQNNQDLTKINFKDQSWLGL-KTRSRDATLSRHKGISLNDLSLHTKISSGPNGDTWRGR 122
             A +  Q+LTKI +KD  W G  +TR R+ TL++  GI    LSL  K++   +G+ W+GR
Sbjct:   122 AEKLGQNLTKIPYKDTFWKGTTRTRPRNGTLNKLAGIDFKQLSLSQKLNENQSGELWKGR 181

Query:   123 WQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP--DLVVISQY 180
             WQ NDIV K+L +R+ T R SRDFNEE+PKLRIFSHPNVLPV+G   SPP    +VIS +
Sbjct:   182 WQGNDIVIKMLKIRDWTTRKSRDFNEEYPKLRIFSHPNVLPVLGACQSPPAPHPIVISHW 241

Query:   181 MAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
             M +GSLY +LHEG   VVD  QA++FA D+ARGMAFLH+LE +IP++ LNSR +M+
Sbjct:   242 MPYGSLYNVLHEGTNFVVDQMQAVKFAFDIARGMAFLHTLEPLIPRHHLNSRSIMI 297

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0001658 "branching involved in ureteric bud morphogenesis" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0030513 "positive regulation of BMP signaling pathway" evidence=IEA

GO:0042327 "positive regulation of phosphorylation" evidence=IEA

GO:0045197 "establishment or maintenance of epithelial cell apical/basal polarity" evidence=IEA

GO:0045669 "positive regulation of osteoblast differentiation" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0090263 "positive regulation of canonical Wnt receptor signaling pathway" evidence=IEA

UNIPROTKB|Q13418 ILK "Integrin-linked protein kinase" [Homo sapiens (taxid:9606)]

 Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
 Identities = 112/236 (47%), Positives = 161/236 (68%)

Query:     4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
             ++  ++HG  PLH+AC  G  ++ E L+  GA V+  N+  + P+  A A    +++R  
Sbjct:    93 INAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLR-ELLRER 151

Query:    64 AVQNNQDLTKINFKDQSWLGL-KTRSRDATLSRHKGISLNDLSLHTKISSGPNGDTWRGR 122
             A +  Q+L +I +KD  W G  +TR R+ TL++H GI    L+  TK++   +G+ W+GR
Sbjct:   152 AEKMGQNLNRIPYKDTFWKGTTRTRPRNGTLNKHSGIDFKQLNFLTKLNENHSGELWKGR 211

Query:   123 WQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP--DLVVISQY 180
             WQ NDIV K+L VR+ + R SRDFNEE P+LRIFSHPNVLPV+G   SPP     +I+ +
Sbjct:   212 WQGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLITHW 271

Query:   181 MAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
             M +GSLY +LHEG   VVD +QA++FA+D+ARGMAFLH+LE +IP++ LNSR VM+
Sbjct:   272 MPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHTLEPLIPRHALNSRSVMI 327

GO:0001658 "branching involved in ureteric bud morphogenesis" evidence=IEA

GO:0001954 "positive regulation of cell-matrix adhesion" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0005178 "integrin binding" evidence=IEA

GO:0005911 "cell-cell junction" evidence=IEA

GO:0006469 "negative regulation of protein kinase activity" evidence=IEA

GO:0007050 "cell cycle arrest" evidence=IEA

GO:0007569 "cell aging" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0010667 "negative regulation of cardiac muscle cell apoptotic process" evidence=IEA

GO:0014912 "negative regulation of smooth muscle cell migration" evidence=IEA

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0018105 "peptidyl-serine phosphorylation" evidence=IEA

GO:0030335 "positive regulation of cell migration" evidence=IEA

GO:0030513 "positive regulation of BMP signaling pathway" evidence=IEA

GO:0032288 "myelin assembly" evidence=IEA

GO:0032956 "regulation of actin cytoskeleton organization" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IEA

GO:0043034 "costamere" evidence=IEA

GO:0043195 "terminal bouton" evidence=IEA

GO:0043198 "dendritic shaft" evidence=IEA

GO:0043206 "extracellular fibril organization" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0043406 "positive regulation of MAP kinase activity" evidence=IEA

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IEA

GO:0045197 "establishment or maintenance of epithelial cell apical/basal polarity" evidence=IEA

GO:0045663 "positive regulation of myoblast differentiation" evidence=IEA

GO:0045669 "positive regulation of osteoblast differentiation" evidence=IEA

GO:0045773 "positive regulation of axon extension" evidence=IEA

GO:0048662 "negative regulation of smooth muscle cell proliferation" evidence=IEA

GO:0048812 "neuron projection morphogenesis" evidence=IEA

GO:0050775 "positive regulation of dendrite morphogenesis" evidence=IEA

GO:0051291 "protein heterooligomerization" evidence=IEA

GO:0051897 "positive regulation of protein kinase B signaling cascade" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005925 "focal adhesion" evidence=IEA

GO:0030017 "sarcomere" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0005737 "cytoplasm" evidence=NAS

GO:0004674 "protein serine/threonine kinase activity" evidence=IDA

GO:0005524 "ATP binding" evidence=NAS

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0007160 "cell-matrix adhesion" evidence=NAS

GO:0007229 "integrin-mediated signaling pathway" evidence=IDA;NAS

GO:0008283 "cell proliferation" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0042327 "positive regulation of phosphorylation" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP

GO:0090263 "positive regulation of canonical Wnt receptor signaling pathway" evidence=IMP

GO:0019901 "protein kinase binding" evidence=IPI

GO:0034446 "substrate adhesion-dependent cell spreading" evidence=IMP

GO:0005829 "cytosol" evidence=TAS

GO:0034329 "cell junction assembly" evidence=TAS

UNIPROTKB|I3L9C8 ILK "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
 Identities = 112/236 (47%), Positives = 161/236 (68%)

Query:     4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
             ++  ++HG  PLH+AC  G  ++ E L+  GA V+  N+  + P+  A A    +++R  
Sbjct:    93 INAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLR-ELLRER 151

Query:    64 AVQNNQDLTKINFKDQSWLGL-KTRSRDATLSRHKGISLNDLSLHTKISSGPNGDTWRGR 122
             A +  Q+L +I +KD  W G  +TR R+ TL++H GI    L+  TK++   +G+ W+GR
Sbjct:   152 AEKMGQNLNRIPYKDTFWKGTTRTRPRNGTLNKHSGIDFKQLNFLTKLNENHSGELWKGR 211

Query:   123 WQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP--DLVVISQY 180
             WQ NDIV K+L VR+ + R SRDFNEE P+LRIFSHPNVLPV+G   SPP     +I+ +
Sbjct:   212 WQGNDIVVKMLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLITHW 271

Query:   181 MAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
             M +GSLY +LHEG   VVD +QA++FA+D+ARGMAFLH+LE +IP++ LNSR VM+
Sbjct:   272 MPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHTLEPLIPRHALNSRSVMI 327

GO:0090263 "positive regulation of canonical Wnt receptor signaling pathway" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0045669 "positive regulation of osteoblast differentiation" evidence=IEA

GO:0045197 "establishment or maintenance of epithelial cell apical/basal polarity" evidence=IEA

GO:0042327 "positive regulation of phosphorylation" evidence=IEA

GO:0030513 "positive regulation of BMP signaling pathway" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0001658 "branching involved in ureteric bud morphogenesis" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

UNIPROTKB|E2R5H4 ILK "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
 Identities = 111/236 (47%), Positives = 160/236 (67%)

Query:     4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
             ++  ++HG  PLH+AC  G  ++ E L+  GA V+  N+  + P+  A A    +++R  
Sbjct:    93 INAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLR-ELLRER 151

Query:    64 AVQNNQDLTKINFKDQSWLGL-KTRSRDATLSRHKGISLNDLSLHTKISSGPNGDTWRGR 122
             A +  Q+L +I +KD  W G  +TR R+ TL++H GI    L+   K++   +G+ W+GR
Sbjct:   152 AEKMGQNLNRIPYKDTFWKGTTRTRPRNGTLNKHSGIDFKQLNFLAKLNENHSGELWKGR 211

Query:   123 WQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP--DLVVISQY 180
             WQ NDIV K+L VR+ + R SRDFNEE P+LRIFSHPNVLPV+G   SPP     +I+ +
Sbjct:   212 WQGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLITHW 271

Query:   181 MAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
             M +GSLY +LHEG   VVD +QA++FA+D+ARGMAFLH+LE +IP++ LNSR VM+
Sbjct:   272 MPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHTLEPLIPRHALNSRSVMI 327

GO:0090263 "positive regulation of canonical Wnt receptor signaling pathway" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0045669 "positive regulation of osteoblast differentiation" evidence=IEA

GO:0045197 "establishment or maintenance of epithelial cell apical/basal polarity" evidence=IEA

GO:0042327 "positive regulation of phosphorylation" evidence=IEA

GO:0030513 "positive regulation of BMP signaling pathway" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0001658 "branching involved in ureteric bud morphogenesis" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

MGI|MGI:1195267 Ilk "integrin linked kinase" [Mus musculus (taxid:10090)]

 Score = 553 (199.7 bits), Expect = 1.9e-53, P = 1.9e-53
 Identities = 110/236 (46%), Positives = 160/236 (67%)

Query:     4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
             ++  ++HG  PLH+AC  G  ++ E L+  GA V+  N+  + P+  A A    +++R  
Sbjct:    93 INAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLR-ELLRER 151

Query:    64 AVQNNQDLTKINFKDQSWLGL-KTRSRDATLSRHKGISLNDLSLHTKISSGPNGDTWRGR 122
             A +  Q+L +I +KD  W G  +TR R+ TL++H GI    L+   K++   +G+ W+GR
Sbjct:   152 AEKMGQNLNRIPYKDTFWKGTTRTRPRNGTLNKHSGIDFKQLNFLAKLNENHSGELWKGR 211

Query:   123 WQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP--DLVVISQY 180
             WQ NDIV K+L VR+ + R SRDFNEE P+LRIFSHPNVLPV+G   +PP     +I+ +
Sbjct:   212 WQGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQAPPAPHPTLITHW 271

Query:   181 MAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
             M +GSLY +LHEG   VVD +QA++FA+D+ARGMAFLH+LE +IP++ LNSR VM+
Sbjct:   272 MPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHTLEPLIPRHALNSRSVMI 327

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001558 "regulation of cell growth" evidence=ISO

GO:0001658 "branching involved in ureteric bud morphogenesis" evidence=IDA

GO:0001725 "stress fiber" evidence=ISO

GO:0001954 "positive regulation of cell-matrix adhesion" evidence=ISO

GO:0004672 "protein kinase activity" evidence=ISO

GO:0004674 "protein serine/threonine kinase activity" evidence=ISO

GO:0004871 "signal transducer activity" evidence=ISO

GO:0005178 "integrin binding" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0005911 "cell-cell junction" evidence=ISO

GO:0005925 "focal adhesion" evidence=ISO;ISA;IDA

GO:0006468 "protein phosphorylation" evidence=ISO

GO:0006469 "negative regulation of protein kinase activity" evidence=ISO

GO:0007050 "cell cycle arrest" evidence=ISO

GO:0007229 "integrin-mediated signaling pathway" evidence=ISO

GO:0007569 "cell aging" evidence=ISO

GO:0008284 "positive regulation of cell proliferation" evidence=ISO;IMP

GO:0009966 "regulation of signal transduction" evidence=IEA

GO:0010667 "negative regulation of cardiac muscle cell apoptotic process" evidence=ISO

GO:0014044 "Schwann cell development" evidence=IMP

GO:0014912 "negative regulation of smooth muscle cell migration" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0017124 "SH3 domain binding" evidence=ISO

GO:0018105 "peptidyl-serine phosphorylation" evidence=ISO;IMP

GO:0019901 "protein kinase binding" evidence=ISO

GO:0021675 "nerve development" evidence=IMP

GO:0022011 "myelination in peripheral nervous system" evidence=IMP

GO:0030027 "lamellipodium" evidence=IDA

GO:0030030 "cell projection organization" evidence=IMP

GO:0030054 "cell junction" evidence=IEA

GO:0030335 "positive regulation of cell migration" evidence=ISO

GO:0030424 "axon" evidence=ISO

GO:0030513 "positive regulation of BMP signaling pathway" evidence=IMP

GO:0032288 "myelin assembly" evidence=ISO

GO:0032956 "regulation of actin cytoskeleton organization" evidence=ISO

GO:0034446 "substrate adhesion-dependent cell spreading" evidence=ISO

GO:0042327 "positive regulation of phosphorylation" evidence=ISO

GO:0042995 "cell projection" evidence=IEA

GO:0043025 "neuronal cell body" evidence=ISO

GO:0043034 "costamere" evidence=ISO

GO:0043066 "negative regulation of apoptotic process" evidence=ISO

GO:0043195 "terminal bouton" evidence=ISO

GO:0043198 "dendritic shaft" evidence=ISO

GO:0043206 "extracellular fibril organization" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

GO:0043406 "positive regulation of MAP kinase activity" evidence=ISO

GO:0043410 "positive regulation of MAPK cascade" evidence=ISO

GO:0043491 "protein kinase B signaling cascade" evidence=IMP

GO:0043524 "negative regulation of neuron apoptotic process" evidence=ISO

GO:0045197 "establishment or maintenance of epithelial cell apical/basal polarity" evidence=IMP

GO:0045663 "positive regulation of myoblast differentiation" evidence=ISO

GO:0045669 "positive regulation of osteoblast differentiation" evidence=IMP

GO:0045773 "positive regulation of axon extension" evidence=ISO

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO

GO:0048662 "negative regulation of smooth muscle cell proliferation" evidence=ISO

GO:0048812 "neuron projection morphogenesis" evidence=ISO

GO:0050772 "positive regulation of axonogenesis" evidence=ISO

GO:0050775 "positive regulation of dendrite morphogenesis" evidence=ISO

GO:0051291 "protein heterooligomerization" evidence=ISO

GO:0051897 "positive regulation of protein kinase B signaling cascade" evidence=ISO

GO:0090263 "positive regulation of canonical Wnt receptor signaling pathway" evidence=ISO

RGD|620063 Ilk "integrin-linked kinase" [Rattus norvegicus (taxid:10116)]

 Score = 553 (199.7 bits), Expect = 1.9e-53, P = 1.9e-53
 Identities = 110/236 (46%), Positives = 160/236 (67%)

Query:     4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
             ++  ++HG  PLH+AC  G  ++ E L+  GA V+  N+  + P+  A A    +++R  
Sbjct:    93 INAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLR-ELLRER 151

Query:    64 AVQNNQDLTKINFKDQSWLGL-KTRSRDATLSRHKGISLNDLSLHTKISSGPNGDTWRGR 122
             A +  Q+L +I +KD  W G  +TR R+ TL++H GI    L+   K++   +G+ W+GR
Sbjct:   152 AEKMGQNLNRIPYKDTFWKGTTRTRPRNGTLNKHSGIDFKQLNFLAKLNENHSGELWKGR 211

Query:   123 WQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP--DLVVISQY 180
             WQ NDIV K+L VR+ + R SRDFNEE P+LRIFSHPNVLPV+G   +PP     +I+ +
Sbjct:   212 WQGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQAPPAPHPTLITHW 271

Query:   181 MAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
             M +GSLY +LHEG   VVD +QA++FA+D+ARGMAFLH+LE +IP++ LNSR VM+
Sbjct:   272 MPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHTLEPLIPRHALNSRSVMI 327

GO:0001558 "regulation of cell growth" evidence=IMP

GO:0001658 "branching involved in ureteric bud morphogenesis" evidence=IEA;ISO

GO:0001954 "positive regulation of cell-matrix adhesion" evidence=IMP

GO:0004672 "protein kinase activity" evidence=IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISO;IDA;IMP

GO:0004871 "signal transducer activity" evidence=IDA

GO:0005178 "integrin binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005911 "cell-cell junction" evidence=IDA

GO:0005925 "focal adhesion" evidence=ISO;IDA

GO:0006468 "protein phosphorylation" evidence=ISO;IDA

GO:0006469 "negative regulation of protein kinase activity" evidence=IMP

GO:0007050 "cell cycle arrest" evidence=IMP

GO:0007229 "integrin-mediated signaling pathway" evidence=ISO;IMP

GO:0007569 "cell aging" evidence=IMP

GO:0008284 "positive regulation of cell proliferation" evidence=ISO;IMP

GO:0010667 "negative regulation of cardiac muscle cell apoptotic process" evidence=IMP

GO:0014044 "Schwann cell development" evidence=ISO

GO:0014912 "negative regulation of smooth muscle cell migration" evidence=IMP

GO:0017124 "SH3 domain binding" evidence=IDA

GO:0018105 "peptidyl-serine phosphorylation" evidence=ISO;IMP

GO:0019901 "protein kinase binding" evidence=IEA;ISO

GO:0019904 "protein domain specific binding" evidence=IC

GO:0021675 "nerve development" evidence=ISO

GO:0022011 "myelination in peripheral nervous system" evidence=ISO

GO:0030017 "sarcomere" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA;ISO

GO:0030030 "cell projection organization" evidence=ISO

GO:0030335 "positive regulation of cell migration" evidence=IMP

GO:0030424 "axon" evidence=IDA

GO:0030513 "positive regulation of BMP signaling pathway" evidence=IEA;ISO

GO:0032288 "myelin assembly" evidence=IMP

GO:0032956 "regulation of actin cytoskeleton organization" evidence=IMP

GO:0034446 "substrate adhesion-dependent cell spreading" evidence=ISO;IMP

GO:0042327 "positive regulation of phosphorylation" evidence=ISO

GO:0043025 "neuronal cell body" evidence=IDA

GO:0043034 "costamere" evidence=IDA

GO:0043066 "negative regulation of apoptotic process" evidence=IMP

GO:0043195 "terminal bouton" evidence=IDA

GO:0043198 "dendritic shaft" evidence=IDA

GO:0043206 "extracellular fibril organization" evidence=IMP

GO:0043234 "protein complex" evidence=IDA

GO:0043406 "positive regulation of MAP kinase activity" evidence=IMP

GO:0043410 "positive regulation of MAPK cascade" evidence=IMP

GO:0043491 "protein kinase B signaling cascade" evidence=ISO

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IMP

GO:0045197 "establishment or maintenance of epithelial cell apical/basal polarity" evidence=IEA;ISO

GO:0045663 "positive regulation of myoblast differentiation" evidence=IMP

GO:0045669 "positive regulation of osteoblast differentiation" evidence=IEA;ISO

GO:0045773 "positive regulation of axon extension" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA;ISO

GO:0048662 "negative regulation of smooth muscle cell proliferation" evidence=IMP

GO:0048812 "neuron projection morphogenesis" evidence=IMP

GO:0050772 "positive regulation of axonogenesis" evidence=IMP

GO:0050775 "positive regulation of dendrite morphogenesis" evidence=IMP

GO:0051291 "protein heterooligomerization" evidence=IDA;IPI

GO:0051897 "positive regulation of protein kinase B signaling cascade" evidence=IMP

GO:0090263 "positive regulation of canonical Wnt receptor signaling pathway" evidence=IEA;ISO

GO:0001725 "stress fiber" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	239
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	7e-20
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-19
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-18
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	6e-17
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	2e-16
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	6e-16
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	2e-15
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	1e-14
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-14
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	6e-14
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	2e-12
cd05034	261	cd05034, PTKc_Src_like, Catalytic domain of Src ki	4e-12
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	4e-11
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	9e-11
cd05041	251	cd05041, PTKc_Fes_like, Catalytic domain of Fes-li	3e-10
cd05148	261	cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro	6e-10
cd05052	263	cd05052, PTKc_Abl, Catalytic domain of the Protein	6e-10
cd05033	266	cd05033, PTKc_EphR, Catalytic domain of Ephrin Rec	8e-10
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	2e-09
pfam00023	33	pfam00023, Ank, Ankyrin repeat	2e-09
cd05069	260	cd05069, PTKc_Yes, Catalytic domain of the Protein	2e-09
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-09
cd05068	261	cd05068, PTKc_Frk_like, Catalytic domain of Fyn-re	3e-09
cd05035	273	cd05035, PTKc_Axl_like, Catalytic Domain of Axl-li	4e-09
cd05070	260	cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Pro	5e-09
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	9e-09
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	2e-08
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	5e-08
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	8e-08
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	9e-08
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	9e-08
cd05071	262	cd05071, PTKc_Src, Catalytic domain of the Protein	1e-07
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	3e-07
cd05075	272	cd05075, PTKc_Axl, Catalytic domain of the Protein	4e-07
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	8e-07
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	9e-07
cd05083	254	cd05083, PTKc_Chk, Catalytic domain of the Protein	1e-06
smart00248	30	smart00248, ANK, ankyrin repeats	2e-06
cd05112	256	cd05112, PTKc_Itk, Catalytic domain of the Protein	2e-06
cd05066	267	cd05066, PTKc_EphR_A, Catalytic domain of the Prot	2e-06
cd05067	260	cd05067, PTKc_Lck_Blk, Catalytic domain of the Pro	3e-06
cd05082	256	cd05082, PTKc_Csk, Catalytic domain of the Protein	3e-06
cd05072	261	cd05072, PTKc_Lyn, Catalytic domain of the Protein	4e-06
cd05080	283	cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) doma	5e-06
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	6e-06
cd05043	280	cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Rece	8e-06
cd05059	256	cd05059, PTKc_Tec_like, Catalytic domain of Tec-li	1e-05
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	2e-05
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	2e-05
cd05042	269	cd05042, PTKc_Aatyk, Catalytic domain of the Prote	2e-05
cd05055	302	cd05055, PTKc_PDGFR, Catalytic domain of the Prote	3e-05
PHA02741	169	PHA02741, PHA02741, hypothetical protein; Provisio	3e-05
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	3e-05
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	4e-05
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	4e-05
cd05057	279	cd05057, PTKc_EGFR_like, Catalytic domain of Epide	4e-05
cd05113	256	cd05113, PTKc_Btk_Bmx, Catalytic domain of the Pro	4e-05
cd05045	290	cd05045, PTKc_RET, Catalytic domain of the Protein	6e-05
cd05065	269	cd05065, PTKc_EphR_B, Catalytic domain of the Prot	6e-05
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	7e-05
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	8e-05
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	1e-04
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	1e-04
cd05089	297	cd05089, PTKc_Tie1, Catalytic domain of the Protei	1e-04
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	1e-04
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	1e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	2e-04
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	2e-04
cd05084	252	cd05084, PTKc_Fes, Catalytic domain of the Protein	2e-04
cd05085	250	cd05085, PTKc_Fer, Catalytic domain of the Protein	2e-04
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	2e-04
cd05110	303	cd05110, PTKc_HER4, Catalytic domain of the Protei	2e-04
cd05073	260	cd05073, PTKc_Hck, Catalytic domain of the Protein	2e-04
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	3e-04
cd05048	283	cd05048, PTKc_Ror, Catalytic Domain of the Protein	3e-04
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	5e-04
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	5e-04
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	6e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-04
cd05056	270	cd05056, PTKc_FAK, Catalytic domain of the Protein	7e-04
cd05051	296	cd05051, PTKc_DDR, Catalytic domain of the Protein	8e-04
cd05047	270	cd05047, PTKc_Tie, Catalytic domain of Tie Protein	8e-04
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	0.001
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	0.001
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	0.001
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	0.001
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	0.001
cd05040	257	cd05040, PTKc_Ack_like, Catalytic domain of the Pr	0.001
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	0.001
cd08216	314	cd08216, PK_STRAD, Pseudokinase domain of STE20-re	0.001
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	0.001
cd05088	303	cd05088, PTKc_Tie2, Catalytic domain of the Protei	0.001
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	0.002
smart00248	30	smart00248, ANK, ankyrin repeats	0.002
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	0.002
cd05097	295	cd05097, PTKc_DDR_like, Catalytic domain of Discoi	0.002
PHA02946	446	PHA02946, PHA02946, ankyin-like protein; Provision	0.002
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	0.003
cd05063	268	cd05063, PTKc_EphR_A2, Catalytic domain of the Pro	0.003
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	0.004
cd05064	266	cd05064, PTKc_EphR_A10, Catalytic domain of the Pr	0.004

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 81.7 bits (202), Expect = 7e-20
 Identities = 33/75 (44%), Positives = 48/75 (64%), Gaps = 1/75 (1%)

Query: 6  VTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAV 65
            D+ G +PLH A   GHL++V+LLL+ GA VNA +    TPLHLAA +GHL+IV+LL +
Sbjct: 2  ARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLL-L 60

Query: 66 QNNQDLTKINFKDQS 80
          +   D+   +    +
Sbjct: 61 EKGADVNARDKDGNT 75

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 81.3 bits (201), Expect = 1e-19
 Identities = 34/72 (47%), Positives = 54/72 (75%), Gaps = 1/72 (1%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           V+  D+ G +PLH A K GHL++V+LLL++GA VNA ++  +TPLHLAA +G+LD+V+LL
Sbjct: 33  VNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLL 92

Query: 64  AVQNNQDLTKIN 75
            +++  D+   +
Sbjct: 93  -LKHGADVNARD 103

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 77.0 bits (190), Expect = 4e-18
 Identities = 31/61 (50%), Positives = 44/61 (72%)

Query: 3   YVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRL 62
            V+  D  G +PLH A + G+L +V+LLL+ GA VNA ++   TPLHLAA +GHL++V+L
Sbjct: 65  DVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKL 124

Query: 63  L 63
           L
Sbjct: 125 L 125

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 73.1 bits (180), Expect = 6e-17
 Identities = 26/51 (50%), Positives = 40/51 (78%)

Query: 13 SPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
          + LH A + G+L++V+LLL+ GA VNA ++  +T LHLAA +G+L+IV+LL
Sbjct: 30 TALHLAARNGNLEIVKLLLEHGADVNAKDKDGNTALHLAARNGNLEIVKLL 80

Length = 91

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 75.7 bits (187), Expect = 2e-16
 Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 6/126 (4%)

Query: 104 LSLHTKISSGPNGDTWRGRWQKNDIVAKIL-AV----RNCTPRVSRDFNEEFPKLRIFSH 158
           L+L  K+  G  G+ ++G  +      ++  AV     + + +   +F  E   +R   H
Sbjct: 1   LTLGKKLGEGAFGEVYKGTLKGKGDGKEVEVAVKTLKEDASEQQIEEFLREARIMRKLDH 60

Query: 159 PNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH 218
           PN++ ++G       L+++ +YM  G L   L +     +  +  L FA+ +ARGM +L 
Sbjct: 61  PNIVKLLGVCTEEEPLMIVMEYMPGGDLLDYLRKNRPKELSLSDLLSFALQIARGMEYLE 120

Query: 219 SLERII 224
           S    I
Sbjct: 121 SK-NFI 125

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 74.1 bits (183), Expect = 6e-16
 Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 8/122 (6%)

Query: 104 LSLHTKISSGPNGDTWRGRW-----QKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFS 157
           L L  K+  G  G+ ++G            VA K L     +     +F EE   ++  S
Sbjct: 1   LELGKKLGEGAFGEVYKGTLKGDGEGTETKVAVKTLK-EGASEEEREEFLEEASIMKKLS 59

Query: 158 HPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
           HPN++ ++G       L ++++YM  G L   L +  G  +     L+ A+ +A+GM +L
Sbjct: 60  HPNIVRLLGVCTQGEPLYIVTEYMPGGDLLDFLRKH-GEKLTLKDLLQMALQIAKGMEYL 118

Query: 218 HS 219
            S
Sbjct: 119 ES 120

Length = 258

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 71.9 bits (177), Expect = 2e-15
 Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 5/117 (4%)

Query: 110 ISSGPNGDTWRGRWQKND--IVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGC 167
           +  G  G  +  R +K    +  KI+  +  +  +  +   E   L+  +HPN++ + G 
Sbjct: 1   LGEGGFGTVYLARDKKTGKKVAIKII-KKEDSSSLLEELLREIEILKKLNHPNIVKLYGV 59

Query: 168 VNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERII 224
                 L ++ +Y   GSL  LL E  G  +   + LR  + +  G+ +LHS   II
Sbjct: 60  FEDENHLYLVMEYCEGGSLKDLLKENEGK-LSEDEILRILLQILEGLEYLHS-NGII 114

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 70.6 bits (174), Expect = 1e-14
 Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 9/127 (7%)

Query: 104 LSLHTKISSGPNGDTWRGRW----QKNDI-VA-KILAVRNCTPRVSRDFNEEFPKLRIFS 157
           L+L  K+  G  G+ ++G+      K  + VA K L   + + +   +F  E   +R   
Sbjct: 1   LTLGKKLGEGAFGEVYKGKLKGKGGKKKVEVAVKTLKE-DASEQQIEEFLREARIMRKLD 59

Query: 158 HPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
           HPNV+ ++G       L ++ +YM  G L + L +     +  +  L FA+ +ARGM +L
Sbjct: 60  HPNVVKLLGVCTEEEPLYIVMEYMEGGDLLSYLRKNRP-KLSLSDLLSFALQIARGMEYL 118

Query: 218 HSLERII 224
            S    I
Sbjct: 119 ESK-NFI 124

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 65.0 bits (159), Expect = 3e-14
 Identities = 22/53 (41%), Positives = 37/53 (69%)

Query: 11 GFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
          G + LH A   G L+LV+ LL++G  +N T+   +T LH+AA +G+L++++LL
Sbjct: 1  GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLL 53

Length = 54

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 65.0 bits (159), Expect = 6e-14
 Identities = 32/64 (50%), Positives = 46/64 (71%), Gaps = 6/64 (9%)

Query: 15 LHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKI 74
          LH A K G+L+LV+LLL++GA VN  +   DT LHLAA +G+L+IV+LL +++  D   +
Sbjct: 1  LHLAAKNGNLELVKLLLEKGADVNLGDT--DTALHLAARNGNLEIVKLL-LEHGAD---V 54

Query: 75 NFKD 78
          N KD
Sbjct: 55 NAKD 58

Length = 91

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 64.5 bits (158), Expect = 2e-12
 Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 11/115 (9%)

Query: 116 GDTWRGRWQKNDIVAKILAV---RNCTPRVSR-DFNEEFPKLRIFSHPNVLPVIGCVNSP 171
           G+ ++G+ +  D     +AV   +       R DF +E   ++   HPNV+ ++G     
Sbjct: 9   GEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVRLLGVCTEE 68

Query: 172 PDLVVISQYMAWGSLYALL-------HEGAGIVVDFAQALRFAVDVARGMAFLHS 219
             L ++ +YM  G L   L              +     L FA+ +A+GM +L S
Sbjct: 69  EPLYLVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLAS 123

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases

 Score = 63.5 bits (155), Expect = 4e-12
 Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 6/139 (4%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFS 157
           I    L L  K+ +G  G+ W G W     VA K L     +P     F +E   ++   
Sbjct: 3   IPRESLKLERKLGAGQFGEVWMGTWNGTTKVAVKTLKPGTMSPE---AFLQEAQIMKKLR 59

Query: 158 HPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
           H  ++ +    +    + ++++YM+ GSL   L  G G  +   Q +  A  +A GMA+L
Sbjct: 60  HDKLVQLYAVCSEEEPIYIVTEYMSKGSLLDFLKSGEGKKLRLPQLVDMAAQIAEGMAYL 119

Query: 218 HSLERIIPQYQLNSRHVMV 236
            S   I     L +R+++V
Sbjct: 120 ESRNYI--HRDLAARNILV 136

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 60.7 bits (148), Expect = 4e-11
 Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 5/121 (4%)

Query: 106 LHTKISSGPNGDTWRGRWQK-NDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLP 163
           L  K+ SG  G  ++ + +    IVA KIL  R+   +  +    E   LR  SHPN++ 
Sbjct: 3   LLRKLGSGSFGTVYKAKHKGTGKIVAVKILKKRSEKSKKDQTARREIRILRRLSHPNIVR 62

Query: 164 VIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERI 223
           +I        L ++ +Y   G L+  L    G  +   +A + A+ + RG+ +LHS   I
Sbjct: 63  LIDAFEDKDHLYLVMEYCEGGDLFDYLSR--GGPLSEDEAKKIALQILRGLEYLHS-NGI 119

Query: 224 I 224
           I
Sbjct: 120 I 120

Length = 260

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 59.7 bits (145), Expect = 9e-11
 Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 3/121 (2%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSH 158
           I+  +L L   I  G  GD   G ++   +  K L         ++ F  E   +    H
Sbjct: 3   INSKELKLGATIGKGEFGDVMLGDYRGQKVAVKCL---KDDSTAAQAFLAEASVMTTLRH 59

Query: 159 PNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH 218
           PN++ ++G V     L ++++YMA GSL   L      V+  AQ L FA+DV  GM +L 
Sbjct: 60  PNLVQLLGVVLQGNPLYIVTEYMAKGSLVDYLRSRGRAVITLAQQLGFALDVCEGMEYLE 119

Query: 219 S 219
            
Sbjct: 120 E 120

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases

 Score = 58.2 bits (141), Expect = 3e-10
 Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 13/117 (11%)

Query: 109 KISSGPNGDTWRGRWQKNDIVAKILAVRNC----TPRVSRDFNEEFPKLRIFSHPNVLPV 164
           KI  G  GD ++G  + N  VA    V+ C     P + R F +E   L+ + HPN++ +
Sbjct: 2   KIGKGNFGDVYKGVLKGNTEVA----VKTCRSTLPPDLKRKFLQEAEILKQYDHPNIVKL 57

Query: 165 IG-CVNSPPDLVVISQYMAWGSLYALLH-EGAGIVVDFAQALRFAVDVARGMAFLHS 219
           IG CV   P  +V+ + +  GSL   L  +   + V   + L+ ++D A GM +L S
Sbjct: 58  IGVCVQKQPIYIVM-ELVPGGSLLTFLRKKKNRLTVK--KLLQMSLDAAAGMEYLES 111

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251

>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

 Score = 57.4 bits (139), Expect = 6e-10
 Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 3/134 (2%)

Query: 103 DLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVL 162
           + +L  K+ SG  G+ W G W+    VA I  +++      +DF +E   L+   H +++
Sbjct: 7   EFTLERKLGSGYFGEVWEGLWKNRVRVA-IKILKSDDLLKQQDFQKEVQALKRLRHKHLI 65

Query: 163 PVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLER 222
            +    +    + +I++ M  GSL A L    G V+  A  +  A  VA GMA+L   E+
Sbjct: 66  SLFAVCSVGEPVYIITELMEKGSLLAFLRSPEGQVLPVASLIDMACQVAEGMAYLE--EQ 123

Query: 223 IIPQYQLNSRHVMV 236
                 L +R+++V
Sbjct: 124 NSIHRDLAARNILV 137

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261

>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

 Score = 57.6 bits (139), Expect = 6e-10
 Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 3/118 (2%)

Query: 103 DLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVL 162
           D+++  K+  G  G+ + G W+K  +   +  ++  T  V  +F +E   ++   HPN++
Sbjct: 7   DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNLV 65

Query: 163 PVIG-CVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS 219
            ++G C   PP   +I+++M +G+L   L E     V+    L  A  ++  M +L  
Sbjct: 66  QLLGVCTREPP-FYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEK 122

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). The TEL gene is a frequent fusion partner of other tyr kinase oncogenes, including Tel/Abl, Tel/PDGFRbeta, and Tel/Jak2, found in patients with leukemia and myeloproliferative disorders. Length = 263

>gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

 Score = 57.3 bits (139), Expect = 8e-10
 Identities = 35/142 (24%), Positives = 62/142 (43%), Gaps = 7/142 (4%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVR----NCTPRVSRDFNEEFPKLR 154
           I  + +++   I  G  G+  RGR +        +A++      + +   DF  E   + 
Sbjct: 1   IDPSYVTIEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMG 60

Query: 155 IFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGM 214
            F HPN++ + G V     +++I++YM  GSL   L E  G      Q +     +A GM
Sbjct: 61  QFDHPNIIRLEGVVTKSRPVMIITEYMENGSLDKFLRENDGKFT-VGQLVGMLRGIASGM 119

Query: 215 AFLHSLERIIPQYQLNSRHVMV 236
            +L   E       L +R+++V
Sbjct: 120 KYLS--EMNYVHRDLAARNILV 139

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. This allows ephrin/EphR dimers to form, leading to the activation of the intracellular tyr kinase domain. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). The main effect of ephrin/EphR interaction is cell-cell repulsion or adhesion. Ephrin/EphR signaling is important in neural development and plasticity, cell morphogenesis and proliferation, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 57.2 bits (138), Expect = 2e-09
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 8   DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQN 67
           D  G +PLH AC  GH+++V +LL+ GA     ++   TPL LA  +G  ++V+LL+  +
Sbjct: 112 DYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLLSRHS 171

Query: 68  NQDLT-KINFKDQSWLGLKTRSRDATLSRH 96
                   N K  S+ G      D+ +S H
Sbjct: 172 QCHFELGANAKPDSFTGKPPSLEDSPISSH 201

Length = 664

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 51.4 bits (124), Expect = 2e-09
 Identities = 17/33 (51%), Positives = 25/33 (75%)

Query: 10 HGFSPLHWACKEGHLKLVELLLQRGARVNATNR 42
           G +PLH A + GHL++V+LLL+ GA VNA ++
Sbjct: 1  DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|133200 cd05069, PTKc_Yes, Catalytic domain of the Protein Tyrosine Kinase, Yes

 Score = 55.8 bits (134), Expect = 2e-09
 Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 5/126 (3%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFS 157
           I    L L  K+  G  G+ W G W     VA K L      P     F +E   ++   
Sbjct: 3   IPRESLRLDVKLGQGCFGEVWMGTWNGTTKVAIKTLKPGTMMPEA---FLQEAQIMKKLR 59

Query: 158 HPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
           H  ++P+   V+  P + +++++M  GSL   L EG G  +   Q +  A  +A GMA++
Sbjct: 60  HDKLVPLYAVVSEEP-IYIVTEFMGKGSLLDFLKEGDGKYLKLPQLVDMAAQIADGMAYI 118

Query: 218 HSLERI 223
             +  I
Sbjct: 119 ERMNYI 124

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. c-Yes kinase is the cellular homolog of the oncogenic protein (v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma viruses. It displays functional overlap with other Src subfamily members, particularly Src. It also shows some unique functions such as binding to occludins, transmembrane proteins that regulate extracellular interactions in tight junctions. Yes also associates with a number of proteins in different cell types that Src does not interact with, like JAK2 and gp130 in pre-adipocytes, and Pyk2 in treated pulmonary vein endothelial cells. Although the biological function of Yes remains unclear, it appears to have a role in regulating cell-cell interactions and vesicle trafficking in polarized cells. Length = 260

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 55.6 bits (133), Expect = 2e-09
 Identities = 25/56 (44%), Positives = 35/56 (62%)

Query: 8   DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           D+ G +PLHWA   G   +VELLL+ GA  N+ N    T L  AA +G +++V+LL
Sbjct: 144 DEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLL 199

Length = 235

>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

 Score = 55.5 bits (134), Expect = 3e-09
 Identities = 41/140 (29%), Positives = 64/140 (45%), Gaps = 8/140 (5%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFS 157
           I    + L  K+ +G  G+ W G W     VA K L      P+   DF  E   ++   
Sbjct: 3   IDRTSIQLLRKLGAGQFGEVWEGLWNNTTPVAVKTLKPGTMDPK---DFLAEAQIMKKLR 59

Query: 158 HPNVLPVIG-CVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAF 216
           HP ++ +   C    P + ++++ M +GSL   L  GAG  +   Q +  A  VA GMA+
Sbjct: 60  HPKLIQLYAVCTLEEP-IYIVTELMKYGSLLEYLQGGAGRALKLPQLIDMAAQVASGMAY 118

Query: 217 LHSLERIIPQYQLNSRHVMV 236
           L +   I     L +R+V+V
Sbjct: 119 LEAQNYI--HRDLAARNVLV 136

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Frk, also known as Rak, is specifically expressed in liver, lung, kidney, intestine, mammary glands, and the islets of Langerhans. Rodent homologs were previously referred to as GTK (gastrointestinal tyr kinase), BSK (beta-cell Src-like kinase), or IYK (intestinal tyr kinase). Studies in mice reveal that Frk is not essential for viability. It plays a role in the signaling that leads to cytokine-induced beta-cell death in Type I diabetes. It also regulates beta-cell number during embryogenesis and early in life. Length = 261

>gnl|CDD|133167 cd05035, PTKc_Axl_like, Catalytic Domain of Axl-like Protein Tyrosine Kinases

 Score = 55.2 bits (133), Expect = 4e-09
 Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 15/131 (11%)

Query: 104 LSLHTKISSGPNGDTWRGRWQKND-----IVAKILAVRNCTPRVSRDFNEEFPKLRIFSH 158
           L L   +  G  G    G+  ++D     +  K + +   T     +F  E   ++ F H
Sbjct: 1   LKLGKILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDH 60

Query: 159 PNVLPVIG-CV-----NSPPDLVVISQYMAWGSLYALLH----EGAGIVVDFAQALRFAV 208
           PNV+ +IG C         P  +VI  +M  G L++ L      G    +     L+F V
Sbjct: 61  PNVMKLIGVCFEASSLQKIPKPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMV 120

Query: 209 DVARGMAFLHS 219
           D+A GM +L +
Sbjct: 121 DIALGMEYLSN 131

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellular effects including survival, proliferation, migration, and phagocytosis. They are also associated with several types of cancer as well as inflammatory, autoimmune, vascular, and kidney diseases. Mer is named after its original reported expression pattern (monocytes, epithelial, and reproductive tissues). It is required for the ingestion of apoptotic cells by phagocytes such as macrophages, retinal pigment epithelial cells, and dendritic cells. Mer is also important in maintaining immune homeostasis. Length = 273

>gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

 Score = 55.0 bits (132), Expect = 5e-09
 Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 7/139 (5%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFS 157
           I    L L  K+ +G  G+ W G W  N  VA K L     +P     F EE   ++   
Sbjct: 3   IPRESLQLIKKLGNGQFGEVWMGTWNGNTKVAVKTLKPGTMSPES---FLEEAQIMKKLR 59

Query: 158 HPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
           H  ++ +   V+  P + ++++YM+ GSL   L +G G  +     +  A  VA GMA++
Sbjct: 60  HDKLVQLYAVVSEEP-IYIVTEYMSKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYI 118

Query: 218 HSLERIIPQYQLNSRHVMV 236
             +  I     L S +++V
Sbjct: 119 ERMNYI--HRDLRSANILV 135

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Fyn, together with Lck, plays a critical role in T-cell signal transduction by phosphorylating ITAM (immunoreceptor tyr activation motif) sequences on T-cell receptors, ultimately leading to the proliferation and differentiation of T-cells. In addition, Fyn is involved in the myelination of neurons, and is implicated in Alzheimer's and Parkinson's diseases. Yrk has been detected only in chickens. It is primarily found in neuronal and epithelial cells and in macrophages. It may play a role in inflammation and in response to injury. Length = 260

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 50.0 bits (120), Expect = 9e-09
 Identities = 20/45 (44%), Positives = 27/45 (60%)

Query: 7  TDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLA 51
          TD +G +PLH A K G L+LV+ LL+ G  +N  +    T L LA
Sbjct: 12 TDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 53.9 bits (130), Expect = 2e-08
 Identities = 23/60 (38%), Positives = 38/60 (63%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           +++ D +GF+PLH+A    + + V+ LL  GA  N  N+  DTPLH+A  + + +I +LL
Sbjct: 185 INIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLL 244

Length = 422

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 49.2 bits (118), Expect = 5e-08
 Identities = 15/38 (39%), Positives = 25/38 (65%)

Query: 4  VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATN 41
          V+  D  G + LH A + G+L++V+LLL+ GA +N  +
Sbjct: 54 VNAKDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 51.8 bits (124), Expect = 8e-08
 Identities = 21/58 (36%), Positives = 32/58 (55%)

Query: 6   VTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
                G + LH+A +    +L ELLL  GA VN  ++ +++PLH A  H +  IV +L
Sbjct: 163 KDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHIL 220

Length = 477

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 51.0 bits (121), Expect = 9e-08
 Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 7/80 (8%)

Query: 8   DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHL-----DIVRL 62
           D  G  PLH A  +G  K+V+LLL  GA VNA +   DTPLHLAA +G+      ++ +L
Sbjct: 70  DLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKL 129

Query: 63  L--AVQNNQDLTKINFKDQS 80
           L  A  +       +    +
Sbjct: 130 LLEAGADLDVNNLRDEDGNT 149

Length = 235

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 51.3 bits (123), Expect = 9e-08
 Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 5/103 (4%)

Query: 136 RNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSP--PDLVVISQYMAWGSLYALLHEG 193
            +   +   DF  E   LR   H N++   G    P    L +I +Y+  GSL   L   
Sbjct: 43  HSGEEQHRSDFEREIEILRTLDHENIVKYKGVCEKPGGRSLRLIMEYLPSGSLRDYLQRH 102

Query: 194 AGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
               ++  + L F+  + +GM +L S   I     L +R+++V
Sbjct: 103 RD-QINLKRLLLFSSQICKGMDYLGSQRYI--HRDLAARNILV 142

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase, Src

 Score = 50.8 bits (121), Expect = 1e-07
 Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 5/126 (3%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFS 157
           I    L L  K+  G  G+ W G W     VA K L     +P     F +E   ++   
Sbjct: 3   IPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEA---FLQEAQVMKKLR 59

Query: 158 HPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
           H  ++ +   V+  P + ++++YM+ GSL   L    G  +   Q +  A  +A GMA++
Sbjct: 60  HEKLVQLYAVVSEEP-IYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYV 118

Query: 218 HSLERI 223
             +  +
Sbjct: 119 ERMNYV 124

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Length = 262

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 50.0 bits (119), Expect = 3e-07
 Identities = 24/72 (33%), Positives = 40/72 (55%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           V++ DD+G  P+H A K     +++LLL++GA  N  +   ++PLH AA +G    ++LL
Sbjct: 150 VNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLL 209

Query: 64  AVQNNQDLTKIN 75
               N  + K  
Sbjct: 210 IDHGNHIMNKCK 221

Length = 434

>gnl|CDD|173642 cd05075, PTKc_Axl, Catalytic domain of the Protein Tyrosine Kinase, Axl

 Score = 49.3 bits (117), Expect = 4e-07
 Identities = 43/147 (29%), Positives = 69/147 (46%), Gaps = 16/147 (10%)

Query: 104 LSLHTKISSGPNGDTWRGRWQKNDIVAKI----LAVRNCTPRVSRDFNEEFPKLRIFSHP 159
           L+L   +  G  G    G+  ++D + K+    + +  CT     DF  E   ++ F HP
Sbjct: 1   LALGKTLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTRSEMEDFLSEAVCMKEFDHP 60

Query: 160 NVLPVIG-CVNSP-----PDLVVISQYMAWGSLYA-LLHEGAGIVVDF--AQAL-RFAVD 209
           NV+ +IG C+ +      P  VVI  +M  G L++ LL+   G    +   Q L +F  D
Sbjct: 61  NVMRLIGVCLQTVESEGYPSPVVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTD 120

Query: 210 VARGMAFLHSLERIIPQYQLNSRHVMV 236
           +A GM +L S   I     L +R+ M+
Sbjct: 121 IASGMEYLSSKSFI--HRDLAARNCML 145

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transformed cells. Axl signaling is important in many cellular functions such as survival, anti-apoptosis, proliferation, migration, and adhesion. Axl was originally isolated from patients with chronic myelogenous leukemia and a chronic myeloproliferative disorder. Axl is overexpressed in many human cancers including colon, squamous cell, thyroid, breast, and lung carcinomas. Length = 272

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 48.3 bits (114), Expect = 8e-07
 Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 8/69 (11%)

Query: 3   YVSVTDDHGFSPLHWACKEGHLK-----LVELLLQRGAR---VNATNRGDDTPLHLAAAH 54
            V+  D  G +PLH A   G+       + +LLL+ GA     N  +   +TPLH AA +
Sbjct: 98  DVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALN 157

Query: 55  GHLDIVRLL 63
           G  DIV LL
Sbjct: 158 GDADIVELL 166

Length = 235

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 48.5 bits (116), Expect = 9e-07
 Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 5/77 (6%)

Query: 3   YVSVTDDHGFSPLHWA--CKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGH--LD 58
            V+  D++G +PL +A   K     +VE LL  GA VN  N   +  LHL        L 
Sbjct: 98  NVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLK 157

Query: 59  IVRLLAVQNNQDLTKIN 75
           I++LL +    D+   N
Sbjct: 158 ILKLL-IDKGVDINAKN 173

Length = 422

>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

 Score = 48.0 bits (114), Expect = 1e-06
 Identities = 36/139 (25%), Positives = 68/139 (48%), Gaps = 9/139 (6%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVS-RDFNEEFPKLRIFS 157
           ++L  L+L   I  G  G   +G +       + +AV+N    V+ + F EE   +    
Sbjct: 3   LNLQKLTLGEIIGEGEFGAVLQGEY-----TGQKVAVKNIKCDVTAQAFLEETAVMTKLH 57

Query: 158 HPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
           H N++ ++G +     L ++ + M+ G+L   L      +V   Q L+F++DVA GM +L
Sbjct: 58  HKNLVRLLGVILHN-GLYIVMELMSKGNLVNFLRTRGRALVSVIQLLQFSLDVAEGMEYL 116

Query: 218 HSLERIIPQYQLNSRHVMV 236
            S  + +    L +R+++V
Sbjct: 117 ES--KKLVHRDLAARNILV 133

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As a negative regulator of Src kinases, Chk may play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Chk is expressed in brain and hematopoietic cells. Studies in mice reveal that Chk is not functionally redundant with Csk and that it plays an important role as a regulator of immune responses. Chk also plays a role in neural differentiation in a manner independent of Src by enhancing Mapk activation via Ras-mediated signaling. Length = 254

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 43.0 bits (102), Expect = 2e-06
 Identities = 15/30 (50%), Positives = 23/30 (76%)

Query: 10 HGFSPLHWACKEGHLKLVELLLQRGARVNA 39
           G +PLH A + G+L++V+LLL +GA +NA
Sbjct: 1  DGRTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

 Score = 47.3 bits (112), Expect = 2e-06
 Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 7/123 (5%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSH 158
           I  ++L+L  +I SG  G  W G W +   VA I  +R        DF EE   +   SH
Sbjct: 1   IHPSELTLVQEIGSGQFGLVWLGYWLEKRKVA-IKTIRE-GAMSEEDFIEEAQVMMKLSH 58

Query: 159 PNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQA--LRFAVDVARGMAF 216
           P ++ + G       + ++ ++M  G L   L    G    F+Q   L   +DV  GMA+
Sbjct: 59  PKLVQLYGVCTERSPICLVFEFMEHGCLSDYLRAQRGK---FSQETLLGMCLDVCEGMAY 115

Query: 217 LHS 219
           L S
Sbjct: 116 LES 118

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Itk contains the Tec homology (TH) domain containing one proline-rich region and a zinc-binding region. Tec kinases are expressed mainly by haematopoietic cells. Itk is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, Itk plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, Itk is crucial for the development of T-helper(Th)2 effector responses. Length = 256

>gnl|CDD|173639 cd05066, PTKc_EphR_A, Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

 Score = 47.2 bits (112), Expect = 2e-06
 Identities = 38/133 (28%), Positives = 65/133 (48%), Gaps = 11/133 (8%)

Query: 110 ISSGPNGDTWRGRWQ---KNDIVAKILAVR-NCTPRVSRDFNEEFPKLRIFSHPNVLPVI 165
           I +G  G+   GR +   K +I   I  ++   T +  RDF  E   +  F HPN++ + 
Sbjct: 12  IGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIHLE 71

Query: 166 GCVNSPPDLVVISQYMAWGSLYALL--HEGAGIVVDFAQALRFAVDVARGMAFLHSLERI 223
           G V     ++++++YM  GSL A L  H+G   V+     LR    +A GM +L  +  +
Sbjct: 72  GVVTKSKPVMIVTEYMENGSLDAFLRKHDGQFTVIQLVGMLR---GIASGMKYLSDMGYV 128

Query: 224 IPQYQLNSRHVMV 236
                L +R+++V
Sbjct: 129 --HRDLAARNILV 139

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. EphARs and ephrin-A ligands are expressed in multiple areas of the developing brain, especially in the retina and tectum. They are part of a system controlling retinotectal mapping. Length = 267

>gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

 Score = 46.8 bits (111), Expect = 3e-06
 Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 5/120 (4%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFS 157
           +    L L  K+ +G  G+ W G +  +  VA K L   + +P     F  E   ++   
Sbjct: 3   VPRETLKLVKKLGAGQFGEVWMGYYNGHTKVAIKSLKQGSMSPEA---FLAEANLMKQLQ 59

Query: 158 HPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
           HP ++ +   V   P + +I++YM  GSL   L    GI +   + +  A  +A GMAF+
Sbjct: 60  HPRLVRLYAVVTQEP-IYIITEYMENGSLVDFLKTPEGIKLTINKLIDMAAQIAEGMAFI 118

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lck is expressed in T-cells and natural killer (NK) cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Blk is expressed specifically in B-cells. It is involved in pre-BCR (B-cell receptor) signaling. Length = 260

>gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

 Score = 46.5 bits (110), Expect = 3e-06
 Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 7/139 (5%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSH 158
           +++ +L L   I  G  GD   G ++ N +  K   ++N     ++ F  E   +    H
Sbjct: 3   LNMKELKLLQTIGKGEFGDVMLGDYRGNKVAVK--CIKN--DATAQAFLAEASVMTQLRH 58

Query: 159 PNVLPVIGC-VNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
            N++ ++G  V     L ++++YMA GSL   L      V+     L+F++DV   M +L
Sbjct: 59  SNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYL 118

Query: 218 HSLERIIPQYQLNSRHVMV 236
            +   +     L +R+V+V
Sbjct: 119 EANNFV--HRDLAARNVLV 135

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Csk is expressed in a wide variety of tissues. As a negative regulator of Src, Csk plays a role in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, Csk also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. Length = 256

>gnl|CDD|173641 cd05072, PTKc_Lyn, Catalytic domain of the Protein Tyrosine Kinase, Lyn

 Score = 46.2 bits (109), Expect = 4e-06
 Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 6/121 (4%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVS--RDFNEEFPKLRIF 156
           I    + L  K+ +G  G+ W G +  +  VA    V+   P     + F EE   ++  
Sbjct: 3   IPRESIKLVKKLGAGQFGEVWMGYYNNSTKVA----VKTLKPGTMSVQAFLEEANLMKTL 58

Query: 157 SHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAF 216
            H  ++ +   V     + +I++YMA GSL   L    G  V   + + F+  +A GMA+
Sbjct: 59  QHDKLVRLYAVVTKEEPIYIITEYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAY 118

Query: 217 L 217
           +
Sbjct: 119 I 119

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lyn is expressed in B lymphocytes and myeloid cells. It exhibits both positive and negative regulatory roles in B cell receptor (BCR) signaling. Lyn, as well as Fyn and Blk, promotes B cell activation by phosphorylating ITAMs (immunoreceptor tyr activation motifs) in CD19 and in Ig components of BCR. It negatively regulates signaling by its unique ability to phosphorylate ITIMs (immunoreceptor tyr inhibition motifs) in cell surface receptors like CD22 and CD5. Lyn also plays an important role in G-CSF receptor signaling by phosphorylating a variety of adaptor molecules. Length = 261

>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

 Score = 46.0 bits (109), Expect = 5e-06
 Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 11/117 (9%)

Query: 126 NDIVAKILAV----RNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPD--LVVISQ 179
           ND   +++AV    R C  + +  + +E   L+   H N++   GC +      L +I +
Sbjct: 29  NDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTLYHENIVKYKGCCSEQGGKGLQLIME 88

Query: 180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
           Y+  GSL   L +     ++ AQ L FA  +  GMA+LHS   I     L +R+V++
Sbjct: 89  YVPLGSLRDYLPKHK---LNLAQLLLFAQQICEGMAYLHSQHYI--HRDLAARNVLL 140

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 283

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 45.6 bits (109), Expect = 6e-06
 Identities = 25/121 (20%), Positives = 49/121 (40%), Gaps = 12/121 (9%)

Query: 109 KISSGPNGDTWRGRWQKND-IVA-KILAVRNCTPRVSRDFNEEFPKLRIFS---HPNVLP 163
           K+  G  G  +  R +K   +VA K++  +       R   E    ++I     HPN++ 
Sbjct: 6   KLGEGSFGKVYLARDKKTGKLVAIKVIKKKKIKKDRERILRE----IKILKKLKHPNIVR 61

Query: 164 VIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERI 223
           +         L ++ +Y   G L+ LL +   +     +A  +   +   + +LHS   I
Sbjct: 62  LYDVFEDEDKLYLVMEYCEGGDLFDLLKKRGRL--SEDEARFYLRQILSALEYLHSK-GI 118

Query: 224 I 224
           +
Sbjct: 119 V 119

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|133175 cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

 Score = 45.5 bits (108), Expect = 8e-06
 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 7/79 (8%)

Query: 152 KLRIFSHPNVLPVIGCVNSPPDL-VVISQYMAWGSLYALLHEGAGIVVDFAQALR----- 205
            L   SH N+LP++       +   V+  YM WG+L   L +      +  QAL      
Sbjct: 61  LLYGLSHQNILPILHVCIEDGEPPFVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLV 120

Query: 206 -FAVDVARGMAFLHSLERI 223
             A+ +A GM++LH    I
Sbjct: 121 HMAIQIACGMSYLHKRGVI 139

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It acts as a chemorepulsive axon guidance receptor of Wnt glycoproteins and is responsible for the establishment of axon tracts during the development of the central nervous system. In addition, studies in mice reveal that Ryk is essential in skeletal, craniofacial, and cardiac development. Thus, it appears Ryk is involved in signal transduction despite its lack of kinase activity. Ryk may function as an accessory protein that modulates the signals coming from catalytically active partner RTKs such as the Eph receptors. Length = 280

>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 5/134 (3%)

Query: 103 DLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVL 162
           +L+   ++ SG  G    G+W+    VA I  +R        DF EE   +   SHPN++
Sbjct: 5   ELTFLKELGSGQFGVVHLGKWRGKIDVA-IKMIREGA-MSEDDFIEEAKVMMKLSHPNLV 62

Query: 163 PVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLER 222
            + G       + ++++YMA G L   L E  G  +     L    DV   M +L S   
Sbjct: 63  QLYGVCTKQRPIFIVTEYMANGCLLNYLRERKGK-LGTEWLLDMCSDVCEAMEYLESNGF 121

Query: 223 IIPQYQLNSRHVMV 236
           I     L +R+ +V
Sbjct: 122 I--HRDLAARNCLV 133

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 27/94 (28%), Positives = 53/94 (56%), Gaps = 4/94 (4%)

Query: 3   YVSVTDDHGFSPLH-WACKEGHLKLVELLLQRGARVNATNRGDDTPLH--LAAAHGHLDI 59
            V+  +  GF+PLH +      L +++LL++ GA VNA ++   TPLH  L+  + +  +
Sbjct: 75  DVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKV 134

Query: 60  VRLLAVQNNQDLTKINFKDQSWLGLKTRSRDATL 93
           +RLL ++   D+  ++    + L +  +SR+A +
Sbjct: 135 IRLL-LRKGADVNALDLYGMTPLAVLLKSRNANV 167

Length = 471

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 39.9 bits (94), Expect = 2e-05
 Identities = 16/30 (53%), Positives = 23/30 (76%)

Query: 10 HGFSPLHWACKEGHLKLVELLLQRGARVNA 39
           G +PLH A + G+L+LV+LLL+ GA +NA
Sbjct: 1  DGNTPLHLAARNGNLELVKLLLEHGADINA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|133174 cd05042, PTKc_Aatyk, Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 5/89 (5%)

Query: 139 TPRVSRDFNEEFPKLRIFSHPNVLPVIG-CVNSPPDLVVISQYMAWGSLYALLHEGAGIV 197
           TP     F +E    R  +HPNVL  +G C+ S P L+V+ ++   G L   L    G+V
Sbjct: 35  TPDEQLLFLQEVQPYRELNHPNVLQCLGQCIESIPYLLVL-EFCPLGDLKNYLRSNRGMV 93

Query: 198 VDFAQA---LRFAVDVARGMAFLHSLERI 223
              AQ     R A +VA G+ +LH  + I
Sbjct: 94  AQMAQKDVLQRMACEVASGLLWLHQADFI 122

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kinases based on overall sequence similarity and the phylogenetic tree. However, analysis of catalytic residues suggests that Aatyk proteins may be multispecific kinases, functioning also as serine/threonine kinases. They are involved in neural differentiation, nerve growth factor (NGF) signaling, apoptosis, and spermatogenesis. Length = 269

>gnl|CDD|133186 cd05055, PTKc_PDGFR, Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

 Score = 44.0 bits (104), Expect = 3e-05
 Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 8/101 (7%)

Query: 125 KNDIVAKILAVRNCTPRVSRDFNEEF-PKLRIFS----HPNVLPVIG-CVNSPPDLVVIS 178
           K+D V K+ AV+   P       E    +L+I S    H N++ ++G C    P ++VI+
Sbjct: 61  KSDAVMKV-AVKMLKPTAHSSEREALMSELKIMSHLGNHENIVNLLGACTIGGP-ILVIT 118

Query: 179 QYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS 219
           +Y  +G L   L       +     L F+  VA+GMAFL S
Sbjct: 119 EYCCYGDLLNFLRRKRESFLTLEDLLSFSYQVAKGMAFLAS 159

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR subfamily receptors are important in the development of a variety of cells. PDGFRs are expressed in a many cells including fibroblasts, neurons, endometrial cells, mammary epithelial cells, and vascular smooth muscle cells. PDGFR signaling is critical in normal embryonic development, angiogenesis, and wound healing. PDGFRs transduce mitogenic signals for connective tissue cells and are important for cell shape and motility. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem cells, the interstitial cells of Cajal, and the pacemaker cells of the GI tract. CSF-1R signaling is critical in the regulation of macrophages and osteoclasts. Mammalian FLT3 plays an important role in the survival, proliferation, and differentiation of stem cells. Length = 302

>gnl|CDD|165108 PHA02741, PHA02741, hypothetical protein; Provisional

 Score = 43.1 bits (101), Expect = 3e-05
 Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 2   YYVSVTDDHGFSPLHWAC----KEGHLKLVELLLQRGARVNATNRGD-DTPLHLAAAHGH 56
             ++ TDD G   +H A      +   ++++ L++ GA +NA    + DT LHLAA    
Sbjct: 51  AALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEGDTALHLAAHRRD 110

Query: 57  LDIVRLLAVQNNQDLTKINFKDQSWLGLKTRSRDATL 93
            D+   L  Q   DL   N  ++S   L   + D  +
Sbjct: 111 HDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAM 147

Length = 169

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 44.3 bits (104), Expect = 3e-05
 Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 1/56 (1%)

Query: 2   YYVSVTDDHGFSPLHWACKEGHL-KLVELLLQRGARVNATNRGDDTPLHLAAAHGH 56
           + V+  DD   +PLH A +   L +LV  LL+RGA VNA N   +TPL+L A +G+
Sbjct: 264 FSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGY 319

Length = 682

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 18/71 (25%)

Query: 11  GFSPLHWACKEGH--LKLVELLLQRGARVNATNRGD----------------DTPLHLAA 52
           G + LH   +     LK+++LL+ +G  +NA NR +                 TPLH A 
Sbjct: 141 GENLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAV 200

Query: 53  AHGHLDIVRLL 63
            + + + V+ L
Sbjct: 201 YNNNPEFVKYL 211

Length = 422

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 43.9 bits (103), Expect = 4e-05
 Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 6/98 (6%)

Query: 20  KEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQ 79
           ++  L + E+LL+ GA VNA +    TP+H AA  G+  +V LL +    D+  I   D 
Sbjct: 154 QQDELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLL-LSYGADVNIIALDDL 212

Query: 80  SWLGLKTRSRD-----ATLSRHKGISLNDLSLHTKISS 112
           S L     S++     A +     I+ NDLSL   I +
Sbjct: 213 SVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRN 250

Length = 682

>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

 Score = 43.2 bits (102), Expect = 4e-05
 Identities = 33/131 (25%), Positives = 63/131 (48%), Gaps = 11/131 (8%)

Query: 112 SGPNGDTWRGRW----QKNDIVAKILAVRNCTPRVS-RDFNEEFPKLRIFSHPNVLPVIG 166
           SG  G  ++G W    +K  I   I  +R  T   + ++  +E   +    HP+V+ ++G
Sbjct: 17  SGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMASVDHPHVVRLLG 76

Query: 167 -CVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIP 225
            C++S   + +I+Q M  G L   +       +     L + V +A+GM++L   E+ + 
Sbjct: 77  ICLSS--QVQLITQLMPLGCLLDYVRNHKD-NIGSQYLLNWCVQIAKGMSYLE--EKRLV 131

Query: 226 QYQLNSRHVMV 236
              L +R+V+V
Sbjct: 132 HRDLAARNVLV 142

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, resulting in the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Collectively, they can recognize a variety of ligands including EGF, TGFalpha, and neuregulins, among others. All four subfamily members can form homo- or heterodimers. HER3 contains an impaired kinase domain and depends on its heterodimerization partner for activation. EGFR subfamily members are involved in signaling pathways leading to a broad range of cellular responses including cell proliferation, differentiation, migration, growth inhibition, and apoptosis. Gain of function alterations, through their overexpression, deletions, or point mutations in their kinase domains, have been implicated in various cancers. These receptors are targets of many small molecule inhibitors and monoclonal antibodies used in cancer therapy. Length = 279

>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

 Score = 43.3 bits (102), Expect = 4e-05
 Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 5/122 (4%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQ-KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFS 157
           I   DL+   ++ +G  G    G+W+ + D+  K++   + +     +F EE   +   S
Sbjct: 1   IDPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMS---EDEFIEEAKVMMKLS 57

Query: 158 HPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
           H  ++ + G       + ++++YM+ G L   L E  G     +Q L    DV  GMA+L
Sbjct: 58  HEKLVQLYGVCTKQRPIYIVTEYMSNGCLLNYLREH-GKRFQPSQLLEMCKDVCEGMAYL 116

Query: 218 HS 219
            S
Sbjct: 117 ES 118

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Btk contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. Bmx is primarily expressed in bone marrow and the arterial endothelium, and plays an important role in ischemia-induced angiogenesis. It facilitates arterial growth, capillary formation, vessel maturation, and bone marrow-derived endothelial progenitor cell mobilization. Length = 256

>gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

 Score = 43.0 bits (101), Expect = 6e-05
 Identities = 32/139 (23%), Positives = 59/139 (42%), Gaps = 25/139 (17%)

Query: 120 RGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQ 179
           +GR     +  K+L   N +    RD   EF  L+  +HP+V+ + G  +    L++I +
Sbjct: 25  KGRAGYTTVAVKMLK-ENASSSELRDLLSEFNLLKQVNHPHVIKLYGACSQDGPLLLIVE 83

Query: 180 YMAWGSLYALLHEGAGI----------------------VVDFAQALRFAVDVARGMAFL 217
           Y  +GSL + L E   +                       +     + FA  ++RGM +L
Sbjct: 84  YAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMGDLISFAWQISRGMQYL 143

Query: 218 HSLERIIPQYQLNSRHVMV 236
             ++ +     L +R+V+V
Sbjct: 144 AEMKLV--HRDLAARNVLV 160

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leading to autophosphorylation, activation, and intracellular signaling. RET is essential for the development of the sympathetic, parasympathetic and enteric nervous systems, and the kidney. RET disruption by germline mutations causes diseases in humans including congenital aganglionosis of the gastrointestinal tract (Hirschsprung's disease) and three related inherited cancers: multiple endocrine neoplasia type 2A (MEN2A), MEN2B, and familial medullary thyroid carcinoma (FMTC). Length = 290

>gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

 Score = 42.5 bits (100), Expect = 6e-05
 Identities = 36/133 (27%), Positives = 66/133 (49%), Gaps = 11/133 (8%)

Query: 110 ISSGPNGDTWRGRWQ---KNDIVAKILAVR-NCTPRVSRDFNEEFPKLRIFSHPNVLPVI 165
           I +G  G+  RGR +   K +I   I  ++   T +  RDF  E   +  F HPN++ + 
Sbjct: 12  IGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNIIHLE 71

Query: 166 GCVNSPPDLVVISQYMAWGSLYALL--HEGAGIVVDFAQALRFAVDVARGMAFLHSLERI 223
           G V     +++I+++M  G+L + L  ++G   V+     LR    +A GM +L  +  +
Sbjct: 72  GVVTKSRPVMIITEFMENGALDSFLRQNDGQFTVIQLVGMLR---GIAAGMKYLSEMNYV 128

Query: 224 IPQYQLNSRHVMV 236
                L +R+++V
Sbjct: 129 --HRDLAARNILV 139

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion. EphBRs play important roles in synapse formation and plasticity, spine morphogenesis, axon guidance, and angiogenesis. In the intestinal epithelium, EphBRs are Wnt signaling target genes that control cell compartmentalization. They function as suppressors of color cancer progression. Length = 269

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 42.7 bits (101), Expect = 7e-05
 Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 8/78 (10%)

Query: 2   YYVSVTDDHGFSPLHWACKEGH-----LKLVELLLQRGARVNATNRGDDTPLHLAAAH-- 54
             ++ +  +  +PLH+     +      ++V+LLL+ GA VNA +    TPL  A +   
Sbjct: 59  ADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKS 118

Query: 55  GHLDIVRLLAVQNNQDLT 72
               IV  L + N  ++ 
Sbjct: 119 NSYSIVEYL-LDNGANVN 135

Length = 422

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 42.7 bits (101), Expect = 8e-05
 Identities = 16/58 (27%), Positives = 30/58 (51%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVR 61
           ++  + +G +PLH+A    + +    L+  GA +NA +   +TPL L   + +   VR
Sbjct: 250 INARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVR 307

Length = 471

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 38.9 bits (91), Expect = 1e-04
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 29 LLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINF 76
          LL      +NAT+   +TPLHLAA +G L++V+ L ++   DL   + 
Sbjct: 1  LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWL-LKPGVDLNLRDS 47

Length = 56

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 42.3 bits (99), Expect = 1e-04
 Identities = 19/49 (38%), Positives = 31/49 (63%)

Query: 15  LHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           LH+A K+G L+ +++L + GA VN  +     P+H+A  H   DI++LL
Sbjct: 128 LHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLL 176

Length = 434

>gnl|CDD|133220 cd05089, PTKc_Tie1, Catalytic domain of the Protein Tyrosine Kinase, Tie1

 Score = 42.3 bits (99), Expect = 1e-04
 Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 17/108 (15%)

Query: 144 RDFNEEFPKL-RIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFA- 201
           RDF  E   L ++  HPN++ ++G   +   L +  +Y  +G+L   L +   +  D A 
Sbjct: 47  RDFAGELEVLCKLGHHPNIINLLGACENRGYLYIAIEYAPYGNLLDFLRKSRVLETDPAF 106

Query: 202 -------------QALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
                        Q L+FA DVA GM +L   + I     L +R+V+V
Sbjct: 107 AKEHGTASTLTSQQLLQFASDVATGMQYLSEKQFI--HRDLAARNVLV 152

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations. In vivo studies of Tie1 show that it is critical in vascular development. Length = 297

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 14/68 (20%)

Query: 10  HGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDD--------------TPLHLAAAHG 55
            G + LH A    + ++V+LLL+RGA V A   GD               +PL+ AA  G
Sbjct: 127 PGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLG 186

Query: 56  HLDIVRLL 63
              IV LL
Sbjct: 187 SPSIVALL 194

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 2/79 (2%)

Query: 2   YYVSVTDDH-GFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIV 60
           ++ S++D H     L  A K   L  ++ LL++G  V++ +    T L +A A  H+D+V
Sbjct: 612 HFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMV 671

Query: 61  RLLAVQNNQDLTKINFKDQ 79
           RLL + N  D+ K N  D 
Sbjct: 672 RLL-IMNGADVDKANTDDD 689

Length = 823

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 37.5 bits (88), Expect = 2e-04
 Identities = 13/19 (68%), Positives = 18/19 (94%)

Query: 45 DTPLHLAAAHGHLDIVRLL 63
          +TPLHLAA +GHL++V+LL
Sbjct: 3  NTPLHLAARNGHLEVVKLL 21

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 8/120 (6%)

Query: 103 DLSLHTKISSGPNGDTWRG-RWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFSHPN 160
           +  L   I  G  G  ++G   +  D VA K +++        +   +E   L+   HPN
Sbjct: 1   NYQLGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPN 60

Query: 161 VLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQAL--RFAVDVARGMAFLH 218
           ++  IG + +   L +I +Y   GSL  ++ +       F ++L   +   V +G+A+LH
Sbjct: 61  IVKYIGSIETSDSLYIILEYAENGSLRQIIKKFGP----FPESLVAVYVYQVLQGLAYLH 116

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|173645 cd05084, PTKc_Fes, Catalytic domain of the Protein Tyrosine Kinase, Fes

 Score = 41.5 bits (97), Expect = 2e-04
 Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 10/116 (8%)

Query: 109 KISSGPNGDTWRGRWQKNDIVAKILAVRNC----TPRVSRDFNEEFPKLRIFSHPNVLPV 164
           +I  G  G+ + GR + ++     +AV++C     P +   F +E   L+ +SHPN++ +
Sbjct: 2   RIGRGNFGEVFSGRLRADN---TPVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRL 58

Query: 165 IG-CVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS 219
           IG C    P  +V+        L  L  EG  + V   + ++   + A GM +L S
Sbjct: 59  IGVCTQKQPIYIVMELVQGGDFLTFLRTEGPRLKVK--ELIQMVENAAAGMEYLES 112

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells. It plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. A recent study implicates Fes kinase as a tumor suppressor in colorectal cancer. Length = 252

>gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase, Fer

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 27/114 (23%), Positives = 53/114 (46%), Gaps = 9/114 (7%)

Query: 110 ISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRD----FNEEFPKLRIFSHPNVLPVI 165
           +  G  G+ ++G  +    VA    V+ C   + ++    F  E   L+ + HPN++ +I
Sbjct: 3   LGKGNFGEVFKGTLKDKTPVA----VKTCKEDLPQELKIKFLSEARILKQYDHPNIVKLI 58

Query: 166 GCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS 219
           G       + ++ + +  G   + L +     +   Q ++FA+D A GMA+L S
Sbjct: 59  GVCTQRQPIYIVMELVPGGDFLSFLRKKKD-ELKTKQLVKFALDAAAGMAYLES 111

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. Length = 250

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 41.5 bits (97), Expect = 2e-04
 Identities = 20/53 (37%), Positives = 29/53 (54%)

Query: 11  GFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           G +PLH A     L +++LL+ RGA  +  N    +PLHLA   G +  + LL
Sbjct: 102 GMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELL 154

Length = 413

>gnl|CDD|173655 cd05110, PTKc_HER4, Catalytic domain of the Protein Tyrosine Kinase, HER4

 Score = 41.2 bits (96), Expect = 2e-04
 Identities = 36/137 (26%), Positives = 67/137 (48%), Gaps = 19/137 (13%)

Query: 110 ISSGPNGDTWRGRWQKNDIVAKI---LAVRNCT--PRVSRDFNEEFPKLRIFSHPNVLPV 164
           + SG  G  ++G W       KI   + + N T  P+ + +F +E   +    HP+++ +
Sbjct: 15  LGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRL 74

Query: 165 IGCVNSPPDLVVISQYMAWGSLYALLHE-----GAGIVVDFAQALRFAVDVARGMAFLHS 219
           +G   S P + +++Q M  G L   +HE     G+ ++      L + V +A+GM +L  
Sbjct: 75  LGVCLS-PTIQLVTQLMPHGCLLDYVHEHKDNIGSQLL------LNWCVQIAKGMMYLE- 126

Query: 220 LERIIPQYQLNSRHVMV 236
            ER +    L +R+V+V
Sbjct: 127 -ERRLVHRDLAARNVLV 142

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands that bind HER4 fall into two groups, the neuregulins (or heregulins) and some EGFR (HER1) ligands including betacellulin, HBEGF, and epiregulin. All four neuregulins (NRG1-4) interact with HER4. Upon ligand binding, HER4 forms homo- or heterodimers with other HER proteins. HER4 is essential in embryonic development. It is implicated in mammary gland, cardiac, and neural development. As a postsynaptic receptor of NRG1, HER4 plays an important role in synaptic plasticity and maturation. The impairment of NRG1/HER4 signaling may contribute to schizophrenia. Length = 303

>gnl|CDD|133204 cd05073, PTKc_Hck, Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

 Score = 41.2 bits (96), Expect = 2e-04
 Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 3/114 (2%)

Query: 104 LSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLP 163
           L L  K+ +G  G+ W   + K+  VA +  ++  +  V   F  E   ++   H  ++ 
Sbjct: 8   LKLEKKLGAGQFGEVWMATYNKHTKVA-VKTMKPGSMSVEA-FLAEANVMKTLQHDKLVK 65

Query: 164 VIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
           +   V   P + +I+++MA GSL   L    G      + + F+  +A GMAF+
Sbjct: 66  LHAVVTKEP-IYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFI 118

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Hck is present in myeloid and lymphoid cells that play a role in the development of cancer. It may be important in the oncogenic signaling of the protein Tel-Abl, which induces a chronic myelogenous leukemia (CML)-like disease. Hck also acts as a negative regulator of granulocyte colony-stimulating factor (G-CSF)-induced proliferation of granulocytic precursors, suggesting a possible role in the development of acute myeloid leukemia (AML). In addition, Hck is essential in regulating the degranulation of polymorphonuclear leukocytes (PMNs). Genetic polymorphisms affect the expression level of Hck, which affects PMN mediator release and influences the development of chronic obstructive pulmonary disease (COPD). Length = 260

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 41.1 bits (96), Expect = 3e-04
 Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 6/73 (8%)

Query: 3   YVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARV-NATNRGDDTPLHLAAAHGHLDIVR 61
           Y +V D++G SPLH A + G    ++LL+  G  + N    G  TPLH A  H     + 
Sbjct: 182 YANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNG-FTPLHNAIIHNR-SAIE 239

Query: 62  LL---AVQNNQDL 71
           LL   A  N+QD+
Sbjct: 240 LLINNASINDQDI 252

Length = 434

>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 33/159 (20%), Positives = 65/159 (40%), Gaps = 22/159 (13%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGR-----WQKNDIVAKILAVR-NCTPRVSRDFNEEFPK 152
           I L+ +    ++  G  G  ++G       + +     I  ++ N  P+V ++F +E   
Sbjct: 2   IPLSAVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAEL 61

Query: 153 LRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALL-----HEGAGI---------VV 198
           +    HPN++ ++G         ++ +Y+A G L+  L     H   G           +
Sbjct: 62  MSDLQHPNIVCLLGVCTKEQPTCMLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSL 121

Query: 199 DFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY 237
           D +  L  A+ +A GM +L S         L +R+ +V 
Sbjct: 122 DCSDFLHIAIQIAAGMEYLSS--HHFVHRDLAARNCLVG 158

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. They play important roles in bone and heart formation. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Drosophila Ror is expressed only in the developing nervous system during neurite outgrowth and neuronal differentiation, suggesting a role for Drosophila Ror in neural development. More recently, mouse Ror1 and Ror2 have also been found to play an important role in regulating neurite growth in central neurons. Ror1 and Ror2 are believed to have some overlapping and redundant functions. Length = 283

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 15/26 (57%), Positives = 21/26 (80%)

Query: 38 NATNRGDDTPLHLAAAHGHLDIVRLL 63
          NA +    TPLHLAA++GHL++V+LL
Sbjct: 1  NARDEDGRTPLHLAASNGHLEVVKLL 26

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 40.2 bits (94), Expect = 5e-04
 Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 1/61 (1%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAH-GHLDIVRL 62
           V++ D    SPLH A K  +  +V +LL+ GA  +A ++  +TPLH++  +    DI++L
Sbjct: 194 VNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKL 253

Query: 63  L 63
           L
Sbjct: 254 L 254

Length = 477

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 40.4 bits (94), Expect = 6e-04
 Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 4/79 (5%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           V+  D +  +P+H+A + G+ K+V LLL  GA VN     D + L  A    ++D ++  
Sbjct: 171 VNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIK-- 228

Query: 64  AVQNNQDLTKINFKDQSWL 82
           A+ +N+  + IN  D S L
Sbjct: 229 AIIDNR--SNINKNDLSLL 245

Length = 682

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 40.2 bits (94), Expect = 6e-04
 Identities = 40/153 (26%), Positives = 72/153 (47%), Gaps = 24/153 (15%)

Query: 66  QNNQDLTKINFKDQSWLGLKTRSRDATLSRHKGISLNDLSLHTK----ISSGPNGDTWRG 121
           +NN +L ++  +D +W   + +  D+ +S  K I++ND+    K    IS G  G +++G
Sbjct: 655 RNNLELKRVENEDGTW---ELQFFDSKVS--KSITINDILSSLKEENVISRGKKGASYKG 709

Query: 122 RWQKND---IVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVIS 178
           +  KN    +V +I    N    +      +  KL+   HPN++ +IG   S     +I 
Sbjct: 710 KSIKNGMQFVVKEI----NDVNSIPSSEIADMGKLQ---HPNIVKLIGLCRSEKGAYLIH 762

Query: 179 QYMAWGSLYALL-----HEGAGIVVDFAQALRF 206
           +Y+   +L  +L          I +  A+ALRF
Sbjct: 763 EYIEGKNLSEVLRNLSWERRRKIAIGIAKALRF 795

Length = 968

>gnl|CDD|133187 cd05056, PTKc_FAK, Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

 Score = 39.7 bits (93), Expect = 7e-04
 Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 6/126 (4%)

Query: 98  GISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNC----TPRVSRDFNEEFPKL 153
            I   D++L   I  G  GD ++G +   +     +AV+ C    +P V   F +E   +
Sbjct: 2   EIQREDITLGRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIM 61

Query: 154 RIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARG 213
           R F HP+++ +IG +   P  +V+      G L + L       +D A  + ++  ++  
Sbjct: 62  RQFDHPHIVKLIGVITENPVWIVMELA-PLGELRSYLQVNKY-SLDLASLILYSYQLSTA 119

Query: 214 MAFLHS 219
           +A+L S
Sbjct: 120 LAYLES 125

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions and at growth factor receptors. Through diverse molecular interactions, FAK functions as a biosensor or integrator to control cell motility. It is a key regulator of cell survival, proliferation, migration and invasion, and thus plays an important role in the development and progression of cancer. Src binds to autophosphorylated FAK forming the FAK-Src dual kinase complex, which is activated in a wide variety of tumor cells and generates signals promoting growth and metastasis. FAK is being developed as a target for cancer therapy. Length = 270

>gnl|CDD|173632 cd05051, PTKc_DDR, Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

 Score = 39.6 bits (93), Expect = 8e-04
 Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 11/86 (12%)

Query: 145 DFNEEFPKLRIFSHPNVLPVIG-CVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQA 203
           DF +E   L   S PN+  ++G C   PP L +I +YM  G L   L +        A  
Sbjct: 65  DFLKEVKILSRLSDPNIARLLGVCTVDPP-LCMIMEYMENGDLNQFLQKHVAETSGLACN 123

Query: 204 LRF---------AVDVARGMAFLHSL 220
            +          A  +A GM +L SL
Sbjct: 124 SKSLSFSTLLYMATQIASGMRYLESL 149

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 296

>gnl|CDD|88330 cd05047, PTKc_Tie, Catalytic domain of Tie Protein Tyrosine Kinases

 Score = 39.3 bits (91), Expect = 8e-04
 Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 17/108 (15%)

Query: 144 RDFNEEFPKL-RIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFA- 201
           RDF  E   L ++  HPN++ ++G       L +  +Y   G+L   L +   +  D A 
Sbjct: 40  RDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAF 99

Query: 202 -------------QALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
                        Q L FA DVARGM +L   ++      L +R+++V
Sbjct: 100 AIANSTASTLSSQQLLHFAADVARGMDYLS--QKQFIHRDLAARNILV 145

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific ligand has been identified for Tie1. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. In vivo studies of Tie1 show that it is critical in vascular development. Length = 270

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 37.4 bits (87), Expect = 0.001
 Identities = 15/28 (53%), Positives = 20/28 (71%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLL 31
           V+  D  G +PLH A K GHL++V+LLL
Sbjct: 99  VNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 39.5 bits (92), Expect = 0.001
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 12 FSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAH-GHLDIVRLLAVQNNQD 70
          F PLH A +  +L +V+ LL RG  VN  +  D TPLH+       L +  ++   N   
Sbjct: 38 FIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCS 97

Query: 71 L 71
          +
Sbjct: 98 V 98

Length = 477

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 39.2 bits (92), Expect = 0.001
 Identities = 22/51 (43%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 7   TDDHGFSPLHWACKEGHLK--LVELLLQRGARVNATNRGDDTPLHLAAAHG 55
           TD  G +PLH        K  LV  LL  G  +NA NR   TPLH AA   
Sbjct: 218 TDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFN 268

Length = 471

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 10/113 (8%)

Query: 4   VSVTDDHGFSPLHWACKEGH---LKLVELLLQRGARVNATNRGDDTPLHLAAAHGH-LDI 59
           V+   ++G +PLH            +V LLL+ GA VNA  R   TPLHL   +   LD+
Sbjct: 40  VNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDV 99

Query: 60  VRLLAVQNNQDLTKINFKDQSWL-----GLKTRSRDATLSRHKGISLNDLSLH 107
           ++LL ++   D+   +   ++ L     G     +   L   KG  +N L L+
Sbjct: 100 IKLL-IKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLY 151

Length = 471

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 39.7 bits (92), Expect = 0.001
 Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 3/67 (4%)

Query: 15  LHWA-CKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHG-HLDIVRLLAVQNNQDLT 72
           LH+A C       V+ L+ RGA VN+ N+   TPLH A      LD++ +L + N  D+ 
Sbjct: 412 LHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEML-LDNGADVN 470

Query: 73  KINFKDQ 79
            IN ++Q
Sbjct: 471 AINIQNQ 477

Length = 682

>gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 8/121 (6%)

Query: 109 KISSGPNGDTWRGRWQKN-----DIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLP 163
           K+  G  G   RG W  +      +  K L     +  +  DF +E   +    H N++ 
Sbjct: 2   KLGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLS-DIMDDFLKEAAIMHSLDHENLIR 60

Query: 164 VIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERI 223
           + G V + P L+++++    GSL   L + A      +    +AV +A GM +L S +R 
Sbjct: 61  LYGVVLTHP-LMMVTELAPLGSLLDRLRKDALGHFLISTLCDYAVQIANGMRYLES-KRF 118

Query: 224 I 224
           I
Sbjct: 119 I 119

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with androgen-independent prostate cancer progression. Tnk1 regulates TNFalpha signaling and may play an important role in cell death. Length = 257

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 39.0 bits (89), Expect = 0.001
 Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 4/117 (3%)

Query: 106 LHTKISSGPNGDTWRGRWQKNDIVAKILAVRNC-TPRVSRDFNEEFPKLRIFSHP-NVLP 163
           +  K+  G  G+ +  R  +  +  K+LA +     +    F  E   L   +HP N++ 
Sbjct: 4   ILRKLGEGSFGEVYLAR-DRKLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNIVK 62

Query: 164 VIGCVNSPPDLVVISQYMAWGSLYALLHE-GAGIVVDFAQALRFAVDVARGMAFLHS 219
           +         L ++ +Y+  GSL  LL + G    +  ++AL     +   + +LHS
Sbjct: 63  LYDFFQDEGSLYLVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLHS 119

Length = 384

>gnl|CDD|173756 cd08216, PK_STRAD, Pseudokinase domain of STE20-related kinase adapter protein

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 8/71 (11%)

Query: 154 RIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLH----EGAGIVVDFAQALRFAVD 209
           R   HPN+LP +       +L V+S  MA+GS   LL     EG   +   A  L+   D
Sbjct: 54  RQLQHPNILPYVTSFIVDSELYVVSPLMAYGSCEDLLKTHFPEGLPELA-IAFILK---D 109

Query: 210 VARGMAFLHSL 220
           V   + ++HS 
Sbjct: 110 VLNALDYIHSK 120

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buccal mucosa. There are two forms of STRAD, alpha and beta, that complex with LKB1 and MO25. The structure of STRAD-alpha is available and shows that this protein binds ATP, has an ordered activation loop, and adopts a closed conformation typical of fully active protein kinases. It does not possess activity due to nonconservative substitutions of essential catalytic residues. ATP binding enhances the affinity of STRAD for MO25. The conformation of STRAD-alpha stabilized through ATP and MO25 may be needed to activate LKB1. Length = 314

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 38.5 bits (90), Expect = 0.001
 Identities = 25/113 (22%), Positives = 52/113 (46%), Gaps = 4/113 (3%)

Query: 109 KISSGPNGDTWRG-RWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIG 166
           KI  G  G  +        +++A K + +++  P+  ++  +E   L +  HPN++   G
Sbjct: 7   KIGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVKYYG 66

Query: 167 CVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS 219
                  + +  +Y + G+L  LL  G   ++D      + + +  G+A+LHS
Sbjct: 67  VEVHREKVYIFMEYCSGGTLEELLEHGR--ILDEHVIRVYTLQLLEGLAYLHS 117

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|133219 cd05088, PTKc_Tie2, Catalytic domain of the Protein Tyrosine Kinase, Tie2

 Score = 38.8 bits (90), Expect = 0.001
 Identities = 40/154 (25%), Positives = 64/154 (41%), Gaps = 22/154 (14%)

Query: 102 NDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVS----RDFNEEFPKL-RIF 156
           ND+     I  G  G   + R +K+ +     A++      S    RDF  E   L ++ 
Sbjct: 7   NDIKFQDVIGEGNFGQVLKARIKKDGLRMDA-AIKRMKEYASKDDHRDFAGELEVLCKLG 65

Query: 157 SHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFA--------------Q 202
            HPN++ ++G       L +  +Y   G+L   L +   +  D A              Q
Sbjct: 66  HHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQ 125

Query: 203 ALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
            L FA DVARGM +L   + I     L +R+++V
Sbjct: 126 LLHFAADVARGMDYLSQKQFI--HRDLAARNILV 157

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. Tie2 signaling plays key regulatory roles in vascular integrity and quiescence, and in inflammation. Length = 303

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 38.4 bits (89), Expect = 0.002
 Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 9/111 (8%)

Query: 3   YVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRL 62
            ++++ D   +PL  A + G  K+VEL ++ GA +N  N     PL  A   G  DI++L
Sbjct: 27  CINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKL 86

Query: 63  L-------AVQNNQDLTKINFKDQSWLGLKTRSRDATLSR--HKGISLNDL 104
           L       ++     + K   K     G+    +DA L    H  I   DL
Sbjct: 87  LIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDL 137

Length = 434

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 34.5 bits (80), Expect = 0.002
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)

Query: 44 DDTPLHLAAAHGHLDIVRLLAVQNNQDLTK 73
            TPLHLAA +G+L++V+LL +    D+  
Sbjct: 2  GRTPLHLAAENGNLEVVKLL-LDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 38.9 bits (90), Expect = 0.002
 Identities = 22/50 (44%), Positives = 33/50 (66%), Gaps = 2/50 (4%)

Query: 13  SPLHWACKEG-HLKLVELLLQRGARVNATNRGDDTPLHLAAA-HGHLDIV 60
           +PLH+ACK+   L ++E+LL  GA VNA N  +  PL +A   HG ++I+
Sbjct: 444 TPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLIALEYHGIVNIL 493

Length = 682

>gnl|CDD|133228 cd05097, PTKc_DDR_like, Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

 Score = 38.4 bits (89), Expect = 0.002
 Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 16/104 (15%)

Query: 132 ILAVRNCTPRVSR----DFNEEFPKLRIFSHPNVLPVIG-CVNSPPDLVVISQYMAWGSL 186
           ++AV+     V++    DF +E   +    +PN++ ++G CV+  P L +I++YM  G L
Sbjct: 46  LVAVKMLRADVTKTARNDFLKEIKIMSRLKNPNIIRLLGVCVSDDP-LCMITEYMENGDL 104

Query: 187 YALL----------HEGAGIVVDFAQALRFAVDVARGMAFLHSL 220
              L          H      V  A  L  AV +A GM +L SL
Sbjct: 105 NQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLASL 148

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 295

>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional

 Score = 38.9 bits (90), Expect = 0.002
 Identities = 20/48 (41%), Positives = 28/48 (58%)

Query: 2   YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLH 49
           Y  + TDD G  PLH A K  + ++V +LL  GA  NA ++   TPL+
Sbjct: 63  YSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLY 110

Length = 446

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 38.0 bits (88), Expect = 0.003
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           +  TD   FSPLH A   G +K +ELL+   A ++  +    TPL +A A G + I ++L
Sbjct: 130 IPNTDK--FSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKML 187

Length = 413

>gnl|CDD|133194 cd05063, PTKc_EphR_A2, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

 Score = 37.6 bits (87), Expect = 0.003
 Identities = 34/144 (23%), Positives = 66/144 (45%), Gaps = 11/144 (7%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQ---KNDIVAKILAVR-NCTPRVSRDFNEEFPKLR 154
           I  + ++    I +G  G+ +RG  +   + ++   I  ++   T +  +DF  E   + 
Sbjct: 2   IHPSHITKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIMG 61

Query: 155 IFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALL--HEGAGIVVDFAQALRFAVDVAR 212
            FSH N++ + G V      ++I++YM  G+L   L  H+G          LR    +A 
Sbjct: 62  QFSHHNIIRLEGVVTKFKPAMIITEYMENGALDKYLRDHDGEFSSYQLVGMLR---GIAA 118

Query: 213 GMAFLHSLERIIPQYQLNSRHVMV 236
           GM +L  +  +     L +R+++V
Sbjct: 119 GMKYLSDMNYV--HRDLAARNILV 140

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. The EphA2 receptor is overexpressed in tumor cells and tumor blood vessels in a variety of cancers including breast, prostate, lung, and colon. As a result, it is an attractive target for drug design since its inhibition could affect several aspects of tumor progression. Length = 268

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 37.6 bits (87), Expect = 0.004
 Identities = 16/37 (43%), Positives = 23/37 (62%)

Query: 27  VELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
             +LL  GA  N  +    TPLH+A A+GH+ +VR+L
Sbjct: 98  ARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVL 134

Length = 664

>gnl|CDD|133195 cd05064, PTKc_EphR_A10, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

 Score = 37.2 bits (86), Expect = 0.004
 Identities = 32/139 (23%), Positives = 64/139 (46%), Gaps = 11/139 (7%)

Query: 104 LSLHTKISSGPNGDTWRGRWQ---KNDIVAKILAVR-NCTPRVSRDFNEEFPKLRIFSHP 159
           + +   + +G  G+  RG  +   K ++   I  +R  C+ +  R F  E   L  F H 
Sbjct: 7   IKIERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCSDKQRRGFLAEALTLGQFDHS 66

Query: 160 NVLPVIGCVNSPPDLVVISQYMAWGSLYALL--HEGAGIVVDFAQALRFAVDVARGMAFL 217
           N++ + G +     ++++++YM+ G+L + L  HEG  +     Q +     +A GM +L
Sbjct: 67  NIVRLEGVITRGNTMMIVTEYMSNGALDSFLRKHEGQLVA---GQLMGMLPGLASGMKYL 123

Query: 218 HSLERIIPQYQLNSRHVMV 236
             +  +     L +  V+V
Sbjct: 124 SEMGYV--HKGLAAHKVLV 140

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). EphA10, which contains an inactive tyr kinase domain, may function to attenuate signals of co-clustered active receptors. EphA10 is mainly expressed in the testis. Ephrin/EphR interaction results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	239
KOG0195|consensus	448		100.0
KOG0595|consensus	429		100.0
KOG0192|consensus	362		100.0
KOG1187|consensus	361		99.97
KOG0615|consensus	475		99.97
KOG0197|consensus	468		99.97
KOG0581|consensus	364		99.97
KOG0598|consensus	357		99.96
KOG0575|consensus	592		99.96
KOG0193|consensus	678		99.96
KOG0600|consensus	560		99.96
KOG0592|consensus	604		99.96
KOG0591|consensus	375		99.96
KOG0593|consensus	396		99.96
KOG0580|consensus	281		99.96
KOG0194|consensus	474		99.95
KOG0610|consensus	459		99.95
KOG0583|consensus	370		99.95
KOG0616|consensus	355		99.95
KOG0661|consensus	538		99.95
KOG0659|consensus	318		99.95
KOG0198|consensus	313		99.95
KOG0597|consensus	808		99.95
KOG0582|consensus	516		99.95
KOG0611|consensus	668		99.95
KOG0594|consensus	323		99.95
KOG0605|consensus	550		99.95
KOG0585|consensus	576		99.94
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	99.94
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	99.94
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	99.94
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	99.94
KOG0663|consensus	419		99.94
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	99.94
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	99.94
PTZ00263	329	protein kinase A catalytic subunit; Provisional	99.94
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	99.94
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	99.94
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	99.94
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	99.94
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	99.93
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	99.93
KOG0658|consensus	364		99.93
KOG0589|consensus	426		99.93
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	99.93
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	99.93
KOG1989|consensus	738		99.93
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	99.93
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	99.93
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	99.93
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	99.93
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	99.93
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	99.93
KOG1094|consensus	807		99.93
KOG0588|consensus	786		99.93
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	99.93
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	99.93
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	99.93
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	99.93
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	99.93
KOG1026|consensus	774		99.93
KOG0584|consensus	632		99.93
KOG0032|consensus	382		99.93
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	99.93
KOG4250|consensus	732		99.93
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	99.93
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	99.93
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	99.93
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	99.93
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	99.93
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	99.93
PHA02988	283	hypothetical protein; Provisional	99.92
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	99.92
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	99.92
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	99.92
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	99.92
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	99.92
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	99.92
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	99.92
KOG4721|consensus	904		99.92
KOG0578|consensus	550		99.92
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	99.92
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	99.92
KOG0586|consensus	596		99.92
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	99.92
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	99.92
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	99.92
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	99.92
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	99.92
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	99.92
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	99.92
KOG0667|consensus	586		99.92
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	99.92
KOG0033|consensus	355		99.92
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	99.92
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	99.92
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	99.92
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	99.92
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	99.92
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	99.92
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	99.92
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	99.92
KOG0196|consensus	996		99.92
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	99.92
KOG4717|consensus	864		99.92
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	99.92
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	99.92
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	99.92
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	99.92
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	99.92
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	99.92
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	99.92
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	99.92
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	99.91
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	99.91
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	99.91
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	99.91
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	99.91
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	99.91
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	99.91
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	99.91
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	99.91
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	99.91
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	99.91
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	99.91
PHA03212	391	serine/threonine kinase US3; Provisional	99.91
KOG1095|consensus	1025		99.91
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	99.91
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	99.91
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	99.91
KOG0599|consensus	411		99.91
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	99.91
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	99.91
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	99.91
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	99.91
KOG0694|consensus	694		99.91
KOG0607|consensus	463		99.91
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	99.91
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.91
PTZ00266	1021	NIMA-related protein kinase; Provisional	99.91
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	99.91
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	99.91
KOG2052|consensus	513		99.91
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	99.91
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	99.91
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	99.91
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	99.91
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	99.91
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	99.91
KOG0660|consensus	359		99.91
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	99.91
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	99.91
PLN00034	353	mitogen-activated protein kinase kinase; Provision	99.91
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	99.91
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	99.91
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	99.91
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	99.91
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	99.91
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	99.91
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	99.91
KOG0662|consensus	292		99.91
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	99.91
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	99.91
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	99.91
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	99.91
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	99.91
PTZ00267	478	NIMA-related protein kinase; Provisional	99.91
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	99.91
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	99.91
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	99.91
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	99.91
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	99.91
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	99.91
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	99.91
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	99.91
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	99.91
KOG0574|consensus	502		99.91
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	99.91
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	99.91
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	99.91
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	99.91
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	99.91
PTZ00283	496	serine/threonine protein kinase; Provisional	99.91
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	99.91
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	99.9
KOG3653|consensus	534		99.9
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	99.9
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	99.9
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	99.9
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	99.9
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	99.9
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	99.9
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	99.9
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	99.9
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	99.9
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	99.9
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	99.9
KOG2345|consensus	302		99.9
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	99.9
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	99.9
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	99.9
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	99.9
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	99.9
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	99.9
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	99.9
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	99.9
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	99.9
KOG4236|consensus	888		99.9
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	99.9
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	99.9
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	99.9
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	99.9
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	99.9
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	99.9
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	99.9
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	99.9
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	99.9
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	99.9
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	99.9
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	99.9
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	99.9
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	99.9
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	99.9
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	99.9
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	99.9
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	99.9
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	99.9
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	99.9
KOG4257|consensus	974		99.9
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	99.9
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	99.9
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	99.9
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	99.9
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	99.9
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	99.9
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	99.9
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	99.9
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	99.9
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	99.9
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	99.9
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	99.89
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	99.89
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	99.89
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	99.89
PLN00009	294	cyclin-dependent kinase A; Provisional	99.89
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	99.89
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	99.89
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	99.89
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	99.89
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	99.89
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	99.89
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	99.89
PTZ00036	440	glycogen synthase kinase; Provisional	99.89
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	99.89
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	99.89
KOG0666|consensus	438		99.89
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	99.89
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	99.89
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	99.89
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	99.89
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	99.89
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	99.89
PHA03211	461	serine/threonine kinase US3; Provisional	99.89
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	99.89
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	99.89
PHA03209	357	serine/threonine kinase US3; Provisional	99.89
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	99.89
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	99.89
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	99.89
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	99.89
KOG0579|consensus	1187		99.89
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	99.89
KOG0612|consensus	1317		99.89
PHA03207	392	serine/threonine kinase US3; Provisional	99.89
KOG0199|consensus	1039		99.89
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	99.89
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	99.88
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	99.88
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	99.88
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	99.88
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	99.88
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	99.88
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	99.88
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	99.88
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	99.88
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	99.88
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	99.88
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	99.88
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	99.88
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.88
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	99.88
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	99.88
KOG1290|consensus	590		99.88
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	99.88
KOG4278|consensus	1157		99.88
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	99.88
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	99.88
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	99.88
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	99.88
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	99.88
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	99.88
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	99.88
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	99.88
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	99.88
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	99.88
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	99.88
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	99.88
KOG0201|consensus	467		99.88
KOG0577|consensus	948		99.88
PRK10345	210	hypothetical protein; Provisional	99.88
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	99.88
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	99.87
PTZ00284	467	protein kinase; Provisional	99.87
KOG0668|consensus	338		99.87
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	99.87
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	99.87
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	99.87
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	99.87
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	99.87
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	99.87
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	99.87
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	99.87
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	99.87
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	99.87
PHA03210	501	serine/threonine kinase US3; Provisional	99.87
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	99.87
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	99.87
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	99.87
KOG1035|consensus	1351		99.87
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	99.87
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	99.87
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	99.87
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	99.87
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	99.87
KOG4645|consensus	1509		99.87
PTZ00024	335	cyclin-dependent protein kinase; Provisional	99.87
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.86
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	99.86
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	99.86
PRK09188	365	serine/threonine protein kinase; Provisional	99.86
KOG1151|consensus	775		99.86
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	99.86
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	99.86
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	99.86
KOG1152|consensus	772		99.86
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	99.86
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	99.86
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	99.86
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	99.86
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	99.86
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	99.86
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	99.86
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	99.86
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	99.86
KOG0604|consensus	400		99.86
KOG1025|consensus	1177		99.86
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	99.86
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	99.86
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	99.86
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	99.86
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	99.86
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	99.86
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	99.86
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	99.86
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	99.85
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	99.85
KOG4279|consensus	1226		99.85
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	99.85
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.85
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	99.85
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	99.85
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	99.85
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	99.85
KOG0596|consensus	677		99.85
KOG4412|consensus	226		99.85
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	99.85
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	99.85
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	99.85
KOG0986|consensus	591		99.84
KOG0608|consensus	1034		99.84
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	99.84
KOG0669|consensus	376		99.84
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	99.84
KOG0690|consensus	516		99.83
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	99.83
KOG1027|consensus	903		99.83
PLN03224	507	probable serine/threonine protein kinase; Provisio	99.83
PHA02882	294	putative serine/threonine kinase; Provisional	99.83
KOG0576|consensus	829		99.82
KOG0587|consensus	953		99.82
KOG4412|consensus	226		99.82
KOG1345|consensus	378		99.82
KOG1163|consensus	341		99.81
KOG0200|consensus	609		99.81
KOG0671|consensus	415		99.8
PRK14879	211	serine/threonine protein kinase; Provisional	99.8
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.8
KOG0614|consensus	732		99.8
KOG0984|consensus	282		99.8
KOG0664|consensus	449		99.8
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.8
KOG1006|consensus	361		99.79
KOG0983|consensus	391		99.79
KOG0696|consensus	683		99.79
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	99.79
PRK09605	535	bifunctional UGMP family protein/serine/threonine	99.78
KOG0695|consensus	593		99.78
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	99.78
KOG0512|consensus	228		99.78
KOG1164|consensus	322		99.78
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.77
KOG0603|consensus	612		99.76
KOG1165|consensus	449		99.76
KOG1167|consensus	418		99.76
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	99.75
smart00090	237	RIO RIO-like kinase.	99.75
KOG0509|consensus	600		99.74
PRK12274	218	serine/threonine protein kinase; Provisional	99.74
PHA02743	166	Viral ankyrin protein; Provisional	99.73
KOG0665|consensus	369		99.71
KOG0514|consensus	452		99.71
PHA02741	169	hypothetical protein; Provisional	99.71
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	99.7
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.68
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.68
KOG0509|consensus	600		99.68
KOG0502|consensus	296		99.67
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	99.67
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	99.66
KOG1166|consensus	974		99.65
PHA02736	154	Viral ankyrin protein; Provisional	99.63
COG0515	384	SPS1 Serine/threonine protein kinase [General func	99.63
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	99.62
KOG0670|consensus	752		99.62
KOG4214|consensus	117		99.62
KOG0508|consensus	615		99.62
KOG4177|consensus	1143		99.61
PHA02884	300	ankyrin repeat protein; Provisional	99.61
PHA02946	446	ankyin-like protein; Provisional	99.61
PHA02791	284	ankyrin-like protein; Provisional	99.61
PHA02791	284	ankyrin-like protein; Provisional	99.61
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.6
KOG1024|consensus	563		99.6
PHA02874	434	ankyrin repeat protein; Provisional	99.6
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.59
PHA02859	209	ankyrin repeat protein; Provisional	99.59
KOG0510|consensus	929		99.58
PHA02878	477	ankyrin repeat protein; Provisional	99.57
PHA02859	209	ankyrin repeat protein; Provisional	99.57
PHA02741	169	hypothetical protein; Provisional	99.57
PHA02875	413	ankyrin repeat protein; Provisional	99.56
KOG0514|consensus	452		99.56
PHA03095	471	ankyrin-like protein; Provisional	99.54
PHA02878	477	ankyrin repeat protein; Provisional	99.53
PHA02730	672	ankyrin-like protein; Provisional	99.53
PHA02875	413	ankyrin repeat protein; Provisional	99.53
PHA03095	471	ankyrin-like protein; Provisional	99.53
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.52
PHA02743	166	Viral ankyrin protein; Provisional	99.52
KOG0512|consensus	228		99.51
KOG0508|consensus	615		99.5
PHA02874	434	ankyrin repeat protein; Provisional	99.5
PHA02798	489	ankyrin-like protein; Provisional	99.5
PHA02795	437	ankyrin-like protein; Provisional	99.49
PHA03100	480	ankyrin repeat protein; Provisional	99.47
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.47
PHA02884	300	ankyrin repeat protein; Provisional	99.46
PHA02946	446	ankyin-like protein; Provisional	99.46
PHA02876	682	ankyrin repeat protein; Provisional	99.46
PHA02736	154	Viral ankyrin protein; Provisional	99.46
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.45
PHA03100	480	ankyrin repeat protein; Provisional	99.45
PLN00181	793	protein SPA1-RELATED; Provisional	99.43
KOG1240|consensus	1431		99.43
PHA02798	489	ankyrin-like protein; Provisional	99.43
PHA02795	437	ankyrin-like protein; Provisional	99.43
KOG0515|consensus	752		99.42
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.42
PHA02989	494	ankyrin repeat protein; Provisional	99.41
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.41
KOG0195|consensus	448		99.39
PHA02917	661	ankyrin-like protein; Provisional	99.39
KOG0510|consensus	929		99.38
PHA02989	494	ankyrin repeat protein; Provisional	99.38
PHA02876	682	ankyrin repeat protein; Provisional	99.37
KOG4158|consensus	598		99.36
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	99.35
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.35
PHA02917	661	ankyrin-like protein; Provisional	99.35
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.35
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	99.34
KOG1710|consensus	396		99.31
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	99.31
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	99.3
PF13606	30	Ank_3: Ankyrin repeat	99.29
KOG3087|consensus	229		99.29
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	99.27
KOG0590|consensus	601		99.27
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.27
PHA02792	631	ankyrin-like protein; Provisional	99.27

>KOG0195|consensus

Probab=100.00  E-value=2.5e-40  Score=242.73  Aligned_cols=234  Identities=64%  Similarity=1.052  Sum_probs=206.6

Q ss_pred             cCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCcc
Q psy12580          3 YVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWL   82 (239)
Q Consensus         3 ~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l   82 (239)
                      |.|+.|..|.+||||||+.|+..+++.|+.+|+.+|..+....||||+|+.+||.++|+.|+ +..+|+|..|..|.||+
T Consensus        26 dln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll-~~kadvnavnehgntpl  104 (448)
T KOG0195|consen   26 DLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLL-SRKADVNAVNEHGNTPL  104 (448)
T ss_pred             ccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHH-HHhcccchhhccCCCch
Confidence            67899999999999999999999999999999999999999999999999999999998884 46777788877777777


Q ss_pred             ccc------------------------------------------------------------------cccCccccccc
Q psy12580         83 GLK------------------------------------------------------------------TRSRDATLSRH   96 (239)
Q Consensus        83 ~~a------------------------------------------------------------------~~~~~~~~~~~   96 (239)
                      ++|                                                                  ++.++.+++++
T Consensus       105 hyacfwgydqiaedli~~ga~v~icnk~g~tpldkakp~l~~~l~e~aek~gq~~nripfkdt~wkgtktr~rdatlsr~  184 (448)
T KOG0195|consen  105 HYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAKPMLKNTLLEIAEKHGQSPNRIPFKDTTWKGTKTRTRDATLSRY  184 (448)
T ss_pred             hhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhchHHHHHHHHHHHHhCCCCCcccccccccccccccccccccccc
Confidence            753                                                                  22333445666


Q ss_pred             cCCCCCCCcccccccCCCCCCceeeccCCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEE
Q psy12580         97 KGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVV  176 (239)
Q Consensus        97 ~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~l  176 (239)
                      .+++..++++..++.+...|..|+|+|.+..+++|++..+..++...+.|..|...++-..||||+.++|.|..+..+.+
T Consensus       185 ~gid~~~lnl~tkl~e~hsgelwrgrwqgndivakil~vr~~t~risrdfneefp~lrifshpnilpvlgacnsppnlv~  264 (448)
T KOG0195|consen  185 TGIDVSSLNLITKLAESHSGELWRGRWQGNDIVAKILNVREVTARISRDFNEEFPALRIFSHPNILPVLGACNSPPNLVI  264 (448)
T ss_pred             cCcchhhhhhhhhhccCCCcccccccccCcchhhhhhhhhhcchhhcchhhhhCcceeeecCCchhhhhhhccCCCCceE
Confidence            77888889999999999999999999999999999999998888888999999999999999999999999999999999


Q ss_pred             EEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        177 ISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       177 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +..||+.|||+.++..+.+-..+..++.+++.++++|+.|||+..+.|.---|.+..++||
T Consensus       265 isq~mp~gslynvlhe~t~vvvd~sqav~faldiargmaflhslep~ipr~~lns~hvmid  325 (448)
T KOG0195|consen  265 ISQYMPFGSLYNVLHEQTSVVVDHSQAVRFALDIARGMAFLHSLEPMIPRFYLNSKHVMID  325 (448)
T ss_pred             eeeeccchHHHHHHhcCccEEEecchHHHHHHHHHhhHHHHhhcchhhhhhhcccceEEec
Confidence            9999999999999999887778999999999999999999999886555556777777776

>KOG0595|consensus

Probab=100.00  E-value=1.8e-35  Score=227.29  Aligned_cols=133  Identities=20%  Similarity=0.393  Sum_probs=122.7

Q ss_pred             CCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEE
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVIS  178 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~  178 (239)
                      ..+|.+.+.||+|+|++||+|+.  .+..+++|.+......+...+.+..|+.+|+.++|||||++++++..++.+||||
T Consensus         9 ~~~y~~~~~iG~GsfavVykg~h~~~~~~VAIK~i~~~~l~~k~~e~L~~Ei~iLkel~H~nIV~l~d~~~~~~~i~lVM   88 (429)
T KOG0595|consen    9 VGDYELSREIGSGSFAVVYKGRHKKSGTEVAIKCIAKKKLNKKLVELLLSEIKILKELKHPNIVRLLDCIEDDDFIYLVM   88 (429)
T ss_pred             cccceehhhccCcceEEEEEeEeccCCceEEeeeehhhccCHHHHHHHHHHHHHHHhcCCcceeeEEEEEecCCeEEEEE
Confidence            36788888899999999999998  4467778998877766777788899999999999999999999999999999999


Q ss_pred             eeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        179 QYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       179 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |||.||+|.+|++..+  .+++.+++.++.|++.||++||+.+  ||||||||+||||+
T Consensus        89 EyC~gGDLs~yi~~~~--~l~e~t~r~Fm~QLA~alq~L~~~~--IiHRDLKPQNiLLs  143 (429)
T KOG0595|consen   89 EYCNGGDLSDYIRRRG--RLPEATARHFMQQLASALQFLHENN--IIHRDLKPQNILLS  143 (429)
T ss_pred             EeCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCC--eeeccCCcceEEec
Confidence            9999999999999987  6999999999999999999999999  99999999999986

>KOG0192|consensus

Probab=100.00  E-value=7.4e-33  Score=218.96  Aligned_cols=144  Identities=31%  Similarity=0.570  Sum_probs=128.4

Q ss_pred             ccccCCCCCCCcccccccCCCCCCceeeccCCCc-eeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCC
Q psy12580         94 SRHKGISLNDLSLHTKISSGPNGDTWRGRWQKND-IVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP  172 (239)
Q Consensus        94 ~~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~-~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~  172 (239)
                      ...+.++..++...+.+|+|+||+||+|.|++.. +++|.+.....+....+.|.+|+.+|.+++|||||+++|++..+.
T Consensus        33 ~~~~~i~~~~l~~~~~iG~G~~g~V~~~~~~g~~~vavK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~f~G~~~~~~  112 (362)
T KOG0192|consen   33 LPEEEIDPDELPIEEVLGSGSFGTVYKGKWRGTDVVAVKIISDPDFDDESRKAFRREASLLSRLRHPNIVQFYGACTSPP  112 (362)
T ss_pred             ccceecChHHhhhhhhcccCCceeEEEEEeCCceeEEEEEecchhcChHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCC
Confidence            3455677778888888999999999999999988 888988776655555778999999999999999999999999888


Q ss_pred             -ceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceeec
Q psy12580        173 -DLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVYI  238 (239)
Q Consensus       173 -~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~~  238 (239)
                       .+++||||+++|+|.+++.......+++..+.+++.||++||+|||+.++ ||||||||+|||++-
T Consensus       113 ~~~~iVtEy~~~GsL~~~l~~~~~~~l~~~~~l~~aldiArGm~YLH~~~~-iIHrDLK~~NiLv~~  178 (362)
T KOG0192|consen  113 GSLCIVTEYMPGGSLSVLLHKKRKRKLPLKVRLRIALDIARGMEYLHSEGP-IIHRDLKSDNILVDL  178 (362)
T ss_pred             CceEEEEEeCCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcCCC-eeecccChhhEEEcC
Confidence             79999999999999999988433479999999999999999999999886 999999999999973

>KOG1187|consensus

Probab=99.97  E-value=2e-31  Score=211.97  Aligned_cols=134  Identities=26%  Similarity=0.425  Sum_probs=117.6

Q ss_pred             CCCcccccccCCCCCCceeeccCC-CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCC-ceEEEEe
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRWQK-NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP-DLVVISQ  179 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~~~-~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~-~~~lv~e  179 (239)
                      ++|.....||+|+||.||+|...+ ..++||.+.......  .++|.+|+.++.+++|||+|+++|||...+ +.+||+|
T Consensus        75 ~~Fs~~~~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~~~~~--~~eF~~Ei~~ls~l~H~Nlv~LlGyC~e~~~~~~LVYE  152 (361)
T KOG1187|consen   75 NNFSESNLIGEGGFGTVYKGVLSDGTVVAVKRLSSNSGQG--EREFLNEVEILSRLRHPNLVKLLGYCLEGGEHRLLVYE  152 (361)
T ss_pred             hCCchhcceecCCCeEEEEEEECCCCEEEEEEecCCCCcc--hhHHHHHHHHHhcCCCcCcccEEEEEecCCceEEEEEE
Confidence            667777899999999999999976 677888665443321  456999999999999999999999999988 5999999


Q ss_pred             eCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhc-CCCCcccCCCCCccceee
Q psy12580        180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS-LERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       180 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~-~~~~ivHrdikp~Nill~  237 (239)
                      |+++|||.+.|.......++|..+.+|+.++|+||+|||+ ..++||||||||+|||||
T Consensus       153 ym~nGsL~d~L~~~~~~~L~W~~R~kIa~g~A~gL~yLH~~~~~~iiHrDiKssNILLD  211 (361)
T KOG1187|consen  153 YMPNGSLEDHLHGKKGEPLDWETRLKIALGAARGLAYLHEGCPPPIIHRDIKSSNILLD  211 (361)
T ss_pred             ccCCCCHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHccCCCCCEecCCCCHHHeeEC
Confidence            9999999999988654368999999999999999999998 556899999999999998

>KOG0615|consensus

Probab=99.97  E-value=1.4e-30  Score=200.60  Aligned_cols=134  Identities=17%  Similarity=0.256  Sum_probs=117.1

Q ss_pred             CCCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCc-----hHHHHHHHHHhHhhhcCCCceeeeeeeeeCCC
Q psy12580        100 SLNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTP-----RVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP  172 (239)
Q Consensus       100 ~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~-----~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~  172 (239)
                      ..+.|.+.+.+|+|+||.|-.|..  .++.+|+|++..+....     .......+|+.+|++++||+||++++++..++
T Consensus       170 ~~d~yii~~~LGsGafg~Vkla~e~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~HP~IV~~~d~f~~~d  249 (475)
T KOG0615|consen  170 FNDYYIISKTLGSGAFGLVKLAYEKKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSHPNIVRIKDFFEVPD  249 (475)
T ss_pred             hcceeEeeeeecCCceeEEEEEEEcccCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhcCCCCEEEEeeeeecCC
Confidence            446677889999999999998876  46788899997763322     11233469999999999999999999999999


Q ss_pred             ceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        173 DLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       173 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ..||||||++||+|++.+-...  .+.+..-+.+++|++.|+.|||++|  |+||||||+|||+.
T Consensus       250 s~YmVlE~v~GGeLfd~vv~nk--~l~ed~~K~~f~Qll~avkYLH~~G--I~HRDiKPeNILl~  310 (475)
T KOG0615|consen  250 SSYMVLEYVEGGELFDKVVANK--YLREDLGKLLFKQLLTAVKYLHSQG--IIHRDIKPENILLS  310 (475)
T ss_pred             ceEEEEEEecCccHHHHHHhcc--ccccchhHHHHHHHHHHHHHHHHcC--cccccCCcceEEec
Confidence            9999999999999999998877  7888899999999999999999999  99999999999985

>KOG0197|consensus

Probab=99.97  E-value=1.3e-30  Score=206.87  Aligned_cols=139  Identities=25%  Similarity=0.496  Sum_probs=126.3

Q ss_pred             ccccCCCCCCCcccccccCCCCCCceeeccCCC-ceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCC
Q psy12580         94 SRHKGISLNDLSLHTKISSGPNGDTWRGRWQKN-DIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP  172 (239)
Q Consensus        94 ~~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~-~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~  172 (239)
                      ...+.++.+.+.+.+.||+|.||.||.|.|++. .+++|.++.....+   +.|.+|+.+|.+++|++||+++|+|..++
T Consensus       198 ~d~wei~r~~l~l~~~LG~G~FG~V~~g~~~~~~~vavk~ik~~~m~~---~~f~~Ea~iMk~L~H~~lV~l~gV~~~~~  274 (468)
T KOG0197|consen  198 RDPWEIPREELKLIRELGSGQFGEVWLGKWNGSTKVAVKTIKEGSMSP---EAFLREAQIMKKLRHEKLVKLYGVCTKQE  274 (468)
T ss_pred             cCCeeecHHHHHHHHHhcCCccceEEEEEEcCCCcccceEEeccccCh---hHHHHHHHHHHhCcccCeEEEEEEEecCC
Confidence            334567778888999999999999999999876 88999998764443   67889999999999999999999999988


Q ss_pred             ceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        173 DLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       173 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +++||||||+.|||.+||+...+..+...+.+.++.|||+||+||++++  +|||||.++|||++
T Consensus       275 piyIVtE~m~~GsLl~yLr~~~~~~l~~~~Ll~~a~qIaeGM~YLes~~--~IHRDLAARNiLV~  337 (468)
T KOG0197|consen  275 PIYIVTEYMPKGSLLDYLRTREGGLLNLPQLLDFAAQIAEGMAYLESKN--YIHRDLAARNILVD  337 (468)
T ss_pred             ceEEEEEecccCcHHHHhhhcCCCccchHHHHHHHHHHHHHHHHHHhCC--ccchhhhhhheeec
Confidence            9999999999999999999866568999999999999999999999999  99999999999997

>KOG0581|consensus

Probab=99.97  E-value=4.2e-30  Score=195.85  Aligned_cols=136  Identities=24%  Similarity=0.382  Sum_probs=120.0

Q ss_pred             cCCCCCCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCC-c
Q psy12580         97 KGISLNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP-D  173 (239)
Q Consensus        97 ~~~~~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~-~  173 (239)
                      ..+..++++....||+|..|.||++.++  +.-.|.|++ .....+...+++.+|+.+++..+||+||.+||+|..+. .
T Consensus        74 ~~i~~~dle~~~~lG~G~gG~V~kv~Hk~t~~i~AlK~I-~~~~~~~~~~Qi~rEl~il~~~~spyIV~~ygaF~~~~~~  152 (364)
T KOG0581|consen   74 NGISLSDLERLGVLGSGNGGTVYKVRHKPTGKIYALKVI-LLNIDPALQKQILRELEILRSCQSPYIVGFYGAFYSNGEE  152 (364)
T ss_pred             cccCHHHhhhhhhcccCCCcEEEEEEEcCCCeEEEEEee-cccCCHHHHHHHHHHHHHHhhCCCCCeeeEeEEEEeCCce
Confidence            3455678889999999999999999985  445566777 33455666788999999999999999999999999988 5


Q ss_pred             eEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhc-CCCCcccCCCCCccceee
Q psy12580        174 LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS-LERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~-~~~~ivHrdikp~Nill~  237 (239)
                      +.|+||||++|||.++++..+  .+++....+++.++++||.|||+ ++  ||||||||+|||+.
T Consensus       153 isI~mEYMDgGSLd~~~k~~g--~i~E~~L~~ia~~VL~GL~YLh~~~~--IIHRDIKPsNlLvN  213 (364)
T KOG0581|consen  153 ISICMEYMDGGSLDDILKRVG--RIPEPVLGKIARAVLRGLSYLHEERK--IIHRDIKPSNLLVN  213 (364)
T ss_pred             EEeehhhcCCCCHHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHhhccC--eeeccCCHHHeeec
Confidence            999999999999999999876  69999999999999999999996 77  99999999999985

>KOG0598|consensus

Probab=99.96  E-value=6.5e-30  Score=194.69  Aligned_cols=136  Identities=18%  Similarity=0.273  Sum_probs=123.1

Q ss_pred             CCCCCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCc-hHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCce
Q psy12580         98 GISLNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTP-RVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDL  174 (239)
Q Consensus        98 ~~~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~-~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~  174 (239)
                      .+..++|++.++||+|+||+|+.++.  .++-+|+|++.++.... ...+....|..+|.+++||.||++.-.|.++..+
T Consensus        21 ~~~~~dF~~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL~~v~hPFiv~l~ysFQt~~kL  100 (357)
T KOG0598|consen   21 MVGPDDFEILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKKKIVEKKEVRHTKAERNILSKIKHPFIVKLIYSFQTEEKL  100 (357)
T ss_pred             cCChhheeeeeeeeccCCceEEEEEEcccCceeehhhhhhhHhhhhhhHHHHHHHHHHHHhCCCCcEeeeEEecccCCeE
Confidence            45678999999999999999999876  34667789997765443 3456788999999999999999999999999999


Q ss_pred             EEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        175 VVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       175 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |||+||+.||.|+..|++.+  .|++..++.++.+|+.||.|||+.|  ||||||||+|||||
T Consensus       101 ylVld~~~GGeLf~hL~~eg--~F~E~~arfYlaEi~lAL~~LH~~g--IiyRDlKPENILLd  159 (357)
T KOG0598|consen  101 YLVLDYLNGGELFYHLQREG--RFSEDRARFYLAEIVLALGYLHSKG--IIYRDLKPENILLD  159 (357)
T ss_pred             EEEEeccCCccHHHHHHhcC--CcchhHHHHHHHHHHHHHHHHHhCC--eeeccCCHHHeeec
Confidence            99999999999999999887  7999999999999999999999999  99999999999998

>KOG0575|consensus

Probab=99.96  E-value=4.6e-29  Score=200.68  Aligned_cols=132  Identities=17%  Similarity=0.278  Sum_probs=119.4

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccC-CchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEE
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNC-TPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVIS  178 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~  178 (239)
                      ..|...+.||+|+|+.+|.++.  .+..+|+|++..... .+...+...+|+.+.+.++|||||+++++|++.+.+|||.
T Consensus        18 ~~Y~~g~~LGkGgFA~cYe~~~~~tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr~L~HpnIV~f~~~FEDs~nVYivL   97 (592)
T KOG0575|consen   18 KRYKRGRFLGKGGFARCYEARDLDTGEVVAVKVVPKKLLKKPKQREKVLNEIEIHRSLKHPNIVQFYHFFEDSNNVYIVL   97 (592)
T ss_pred             ceeeeeeeeccCcceEEEEEEEcCCCcEEEEEEeehHHhcCcchHHHHHHHHHHHHhcCCCcEEeeeeEeecCCceEEEE
Confidence            5588899999999999999987  567777899876532 3445577899999999999999999999999999999999


Q ss_pred             eeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        179 QYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       179 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |+|+.++|..++++..  .+++..++.+++||+.||.|||+.+  |||||||..|+||+
T Consensus        98 ELC~~~sL~el~Krrk--~ltEpEary~l~QIv~GlkYLH~~~--IiHRDLKLGNlfL~  152 (592)
T KOG0575|consen   98 ELCHRGSLMELLKRRK--PLTEPEARYFLRQIVEGLKYLHSLG--IIHRDLKLGNLFLN  152 (592)
T ss_pred             EecCCccHHHHHHhcC--CCCcHHHHHHHHHHHHHHHHHHhcC--ceecccchhheeec
Confidence            9999999999999665  8999999999999999999999999  99999999999986

>KOG0193|consensus

Probab=99.96  E-value=2.5e-29  Score=201.97  Aligned_cols=138  Identities=30%  Similarity=0.535  Sum_probs=129.0

Q ss_pred             cccCCCCCCCcccccccCCCCCCceeeccCCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCce
Q psy12580         95 RHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDL  174 (239)
Q Consensus        95 ~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~  174 (239)
                      ..+++..+++.+...||+|+||+||+|.|.| .||||++......++..+.|.+|+.++++.+|.||+-++|++..++. 
T Consensus       385 ~~WeIp~~ev~l~~rIGsGsFGtV~Rg~whG-dVAVK~Lnv~~pt~~qlqaFKnEVa~lkkTRH~NIlLFMG~~~~p~~-  462 (678)
T KOG0193|consen  385 EEWEIPPEEVLLGERIGSGSFGTVYRGRWHG-DVAVKLLNVDDPTPEQLQAFKNEVAVLKKTRHENILLFMGACMNPPL-  462 (678)
T ss_pred             cccccCHHHhhccceeccccccceeeccccc-ceEEEEEecCCCCHHHHHHHHHHHHHHhhcchhhheeeehhhcCCce-
Confidence            5778888999999999999999999999975 59999999988888888999999999999999999999999998876 


Q ss_pred             EEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        175 VVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       175 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .||+.||+|-||+.+++... ..|+..+..+|++||++||.|||.++  |||||||..|||+.
T Consensus       463 AIiTqwCeGsSLY~hlHv~e-tkfdm~~~idIAqQiaqGM~YLHAK~--IIHrDLKSnNIFl~  522 (678)
T KOG0193|consen  463 AIITQWCEGSSLYTHLHVQE-TKFDMNTTIDIAQQIAQGMDYLHAKN--IIHRDLKSNNIFLH  522 (678)
T ss_pred             eeeehhccCchhhhhccchh-hhhhHHHHHHHHHHHHHhhhhhhhhh--hhhhhccccceEEc
Confidence            99999999999999998766 46999999999999999999999999  99999999999985

>KOG0600|consensus

Probab=99.96  E-value=4.6e-29  Score=196.65  Aligned_cols=135  Identities=18%  Similarity=0.271  Sum_probs=119.4

Q ss_pred             CCCCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCC--Cce
Q psy12580         99 ISLNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSP--PDL  174 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~--~~~  174 (239)
                      ...+.|+..+.||+|.||.||+|+.  .+..||+|.+......+.......+|+.+|+++.||||+++.+.....  ..+
T Consensus       114 r~~~~feki~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~~~~~~~~t~~REI~ILr~l~HpNIikL~eivt~~~~~si  193 (560)
T KOG0600|consen  114 RRADSFEKIEKIGEGTYGQVYKARDLETGKIVALKKVRFDNEKEGFPITAIREIKILRRLDHPNIIKLEEIVTSKLSGSI  193 (560)
T ss_pred             cchHHHHHHHHhcCcchhheeEeeecccCcEEEEEEeecccCCCcchHHHHHHHHHHHhcCCCcccceeeEEEecCCceE
Confidence            3447788889999999999999997  456677788887776677777789999999999999999999988766  589


Q ss_pred             EEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        175 VVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       175 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |||+|||++ +|.-++.... -.|++.+++.+++|++.||+|+|++|  |+|||||.+|||||
T Consensus       194 YlVFeYMdh-DL~GLl~~p~-vkft~~qIKc~mkQLl~Gl~~cH~~g--vlHRDIK~SNiLid  252 (560)
T KOG0600|consen  194 YLVFEYMDH-DLSGLLSSPG-VKFTEPQIKCYMKQLLEGLEYCHSRG--VLHRDIKGSNILID  252 (560)
T ss_pred             EEEEecccc-hhhhhhcCCC-cccChHHHHHHHHHHHHHHHHHhhcC--eeeccccccceEEc
Confidence            999999988 9998887754 36999999999999999999999999  99999999999997

>KOG0592|consensus

Probab=99.96  E-value=2.2e-29  Score=199.95  Aligned_cols=136  Identities=18%  Similarity=0.248  Sum_probs=122.2

Q ss_pred             CCCCCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCch-HHHHHHHHHhHhhhc-CCCceeeeeeeeeCCCc
Q psy12580         98 GISLNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPR-VSRDFNEEFPKLRIF-SHPNVLPVIGCVNSPPD  173 (239)
Q Consensus        98 ~~~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~-~~~~~~~e~~~l~~l-~h~~iv~l~~~~~~~~~  173 (239)
                      .....||.+++.+|.|+|++|++|+.  .+..+|+|++.++....+ ..+-..+|-.+|.++ .||.|++|+-.|.+...
T Consensus        69 kk~~~DF~Fg~~lGeGSYStV~~A~~~~t~keYAiKVl~K~~Iike~KvkYV~~Ek~~l~~L~~hPgivkLy~TFQD~~s  148 (604)
T KOG0592|consen   69 KKTPNDFKFGKILGEGSYSTVVLAREKATGKEYAIKVLDKRYIIKEKKVKYVTREKEALTQLSGHPGIVKLYFTFQDEES  148 (604)
T ss_pred             cCChhhcchhheeccccceeEEEeeecCCCceeeHhhhhHHHHHhhcccchhhHHHHHHHHhhCCCCeEEEEEEeecccc
Confidence            45568999999999999999999987  457889999977644332 235567888999999 89999999999999999


Q ss_pred             eEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        174 LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +|+|+||+++|+|.++|++.+  .|++..++.++.||+.||+|||++|  ||||||||+|||||
T Consensus       149 LYFvLe~A~nGdll~~i~K~G--sfde~caR~YAAeIldAleylH~~G--IIHRDlKPENILLd  208 (604)
T KOG0592|consen  149 LYFVLEYAPNGDLLDLIKKYG--SFDETCARFYAAEILDALEYLHSNG--IIHRDLKPENILLD  208 (604)
T ss_pred             eEEEEEecCCCcHHHHHHHhC--cchHHHHHHHHHHHHHHHHHHHhcC--ceeccCChhheeEc
Confidence            999999999999999999987  7999999999999999999999999  99999999999997

>KOG0591|consensus

Probab=99.96  E-value=2.4e-30  Score=190.61  Aligned_cols=138  Identities=14%  Similarity=0.258  Sum_probs=119.6

Q ss_pred             CCCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeee-eeeCCC-ceE
Q psy12580        100 SLNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIG-CVNSPP-DLV  175 (239)
Q Consensus       100 ~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~-~~~~~~-~~~  175 (239)
                      ...+|.+.++||+|+||.||++..  .+..+|.|.+.-...+....+.+..|+.+|++++|||||++++ .+...+ .++
T Consensus        17 ~l~~y~Il~~IG~GsFg~vykv~~~~~g~l~a~K~i~f~~md~k~rq~~v~Ei~lLkQL~HpNIVqYy~~~f~~~~evln   96 (375)
T KOG0591|consen   17 TLADYQILKKIGRGSFGEVYKVQCLLDGKLVALKKIQFGMMDAKARQDCVKEISLLKQLNHPNIVQYYAHSFIEDNEVLN   96 (375)
T ss_pred             cHHHHHHHHHHcCCcchheEEeeeccCcchhhhhhcchhhccHHHHHHHHHHHHHHHhcCCchHHHHHHHhhhccchhhH
Confidence            346789999999999999999876  5667777888877777888889999999999999999999998 454444 499


Q ss_pred             EEEeeCCCCCHHHHhhc--CCCcccCHHHHHHHHHHHHHHhhhhhcCCCC--cccCCCCCccceee
Q psy12580        176 VISQYMAWGSLYALLHE--GAGIVVDFAQALRFAVDVARGMAFLHSLERI--IPQYQLNSRHVMVY  237 (239)
Q Consensus       176 lv~e~~~~gsL~~~l~~--~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~--ivHrdikp~Nill~  237 (239)
                      ||||+|.+|+|.+.++.  ...+.+++..+++++.|++.||..+|+.=+.  |+||||||.||+||
T Consensus        97 ivmE~c~~GDLsqmIk~~K~qkr~ipE~~Vwk~f~QL~~AL~~cH~~~~r~~VmHRDIKPaNIFl~  162 (375)
T KOG0591|consen   97 IVMELCDAGDLSQMIKHFKKQKRLIPEKTVWKYFVQLCRALYHCHSKIPRGTVMHRDIKPANIFLT  162 (375)
T ss_pred             HHHHhhcccCHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHhccccccceeeccCcchheEEc
Confidence            99999999999999984  3345799999999999999999999993333  99999999999997

>KOG0593|consensus

Probab=99.96  E-value=2.7e-29  Score=186.81  Aligned_cols=132  Identities=14%  Similarity=0.196  Sum_probs=116.7

Q ss_pred             CCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEe
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQ  179 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e  179 (239)
                      +.|+...++|+|+||.||+|+.+  |+-||+|.+.....++...+-.++|+++|++++|+|+|.++++|.....+++|+|
T Consensus         2 ekYE~LgkvGEGSYGvV~KCrnk~TgqIVAIKkF~Esedd~~VkKIAlREIrmLKqLkH~NLVnLiEVFrrkrklhLVFE   81 (396)
T KOG0593|consen    2 EKYEKLGKVGEGSYGVVMKCRNKDTGQIVAIKKFVESEDDPVVKKIALREIRMLKQLKHENLVNLIEVFRRKRKLHLVFE   81 (396)
T ss_pred             cHHhhhhccccCcceEEEEeccCCcccEEEEEeeccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHhcceeEEEee
Confidence            35667788999999999999984  4667778887666666667778999999999999999999999999999999999


Q ss_pred             eCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       180 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||+. ++.+-+.+.+. .++...+.++.+|++.|+.|+|+.+  +|||||||+||||+
T Consensus        82 ~~dh-TvL~eLe~~p~-G~~~~~vk~~l~Q~l~ai~~cHk~n--~IHRDIKPENILit  135 (396)
T KOG0593|consen   82 YCDH-TVLHELERYPN-GVPSELVKKYLYQLLKAIHFCHKNN--CIHRDIKPENILIT  135 (396)
T ss_pred             ecch-HHHHHHHhccC-CCCHHHHHHHHHHHHHHhhhhhhcC--eecccCChhheEEe
Confidence            9988 77777777653 5899999999999999999999999  99999999999986

>KOG0580|consensus

Probab=99.96  E-value=1.7e-29  Score=181.91  Aligned_cols=138  Identities=20%  Similarity=0.336  Sum_probs=121.9

Q ss_pred             CCCCCCcccccccCCCCCCceeeccCC--CceeeeeeeeccC-CchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceE
Q psy12580         99 ISLNDLSLHTKISSGPNGDTWRGRWQK--NDIVAKILAVRNC-TPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLV  175 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g~~g~v~~~~~~~--~~~~vk~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~  175 (239)
                      ...++|++++.+|+|.||.||.|+.+.  .-+++|++.+... ......++.+|+++-+.++||||+++|++|.+...+|
T Consensus        19 ~~l~dfeigr~LgkgkFG~vYlarekks~~IvalKVlfKsqi~~~~v~~qlrREiEIqs~L~hpnilrlY~~fhd~~riy   98 (281)
T KOG0580|consen   19 WTLDDFEIGRPLGKGKFGNVYLAREKKSLFIVALKVLFKSQILKTQVEHQLRREIEIQSHLRHPNILRLYGYFHDSKRIY   98 (281)
T ss_pred             cchhhccccccccCCccccEeEeeeccCCcEEEEeeeeHHHHHHhcchhhhhheeEeecccCCccHHhhhhheeccceeE
Confidence            445789999999999999999999854  4455688865432 2234577899999999999999999999999999999


Q ss_pred             EEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceeec
Q psy12580        176 VISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVYI  238 (239)
Q Consensus       176 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~~  238 (239)
                      +++||...|+++..|+.++...+++..+..+..|++.||.|+|..+  ||||||||+|+|+++
T Consensus        99 LilEya~~gel~k~L~~~~~~~f~e~~~a~Yi~q~A~Al~y~h~k~--VIhRdiKpenlLlg~  159 (281)
T KOG0580|consen   99 LILEYAPRGELYKDLQEGRMKRFDEQRAATYIKQLANALLYCHLKR--VIHRDIKPENLLLGS  159 (281)
T ss_pred             EEEEecCCchHHHHHHhcccccccccchhHHHHHHHHHHHHhccCC--cccCCCCHHHhccCC
Confidence            9999999999999999777678999999999999999999999999  999999999999975

>KOG0194|consensus

Probab=99.95  E-value=2.9e-28  Score=196.00  Aligned_cols=141  Identities=23%  Similarity=0.378  Sum_probs=123.5

Q ss_pred             ccccCCCCCCCcccccccCCCCCCceeeccCC--C---c-eeeeeeeec-cCCchHHHHHHHHHhHhhhcCCCceeeeee
Q psy12580         94 SRHKGISLNDLSLHTKISSGPNGDTWRGRWQK--N---D-IVAKILAVR-NCTPRVSRDFNEEFPKLRIFSHPNVLPVIG  166 (239)
Q Consensus        94 ~~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~--~---~-~~vk~~~~~-~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~  166 (239)
                      .+.+.+..+++.+.++||+|+||.||+|.+.-  .   . |++|..... ........++.+|+++|++++|||||++||
T Consensus       149 r~~Wel~H~~v~l~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~~~e~m~EArvMr~l~H~NVVr~yG  228 (474)
T KOG0194|consen  149 RQKWELSHSDIELGKKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQIKEFMKEARVMRQLNHPNVVRFYG  228 (474)
T ss_pred             ccccEEeccCccccceeecccccEEEEEEEEecCCceeeeeEEEeecccccccHHHHHHHHHHHHHHHhCCCCCEEEEEE
Confidence            34566777889999999999999999998732  1   2 566666542 245566788999999999999999999999


Q ss_pred             eeeCCCceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        167 CVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       167 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ++....++++|||+|.||+|.++|++.++ .++..+...++.+.+.||+|||+.+  +|||||..+|+|++
T Consensus       229 Va~~~~Pl~ivmEl~~gGsL~~~L~k~~~-~v~~~ek~~~~~~AA~Gl~YLh~k~--~IHRDIAARNcL~~  296 (474)
T KOG0194|consen  229 VAVLEEPLMLVMELCNGGSLDDYLKKNKK-SLPTLEKLRFCYDAARGLEYLHSKN--CIHRDIAARNCLYS  296 (474)
T ss_pred             EEcCCCccEEEEEecCCCcHHHHHHhCCC-CCCHHHHHHHHHHHHhHHHHHHHCC--CcchhHhHHHheec
Confidence            99999999999999999999999999774 5999999999999999999999999  99999999999986

>KOG0610|consensus

Probab=99.95  E-value=1.8e-28  Score=189.08  Aligned_cols=140  Identities=16%  Similarity=0.263  Sum_probs=125.8

Q ss_pred             cccCCCCCCCcccccccCCCCCCceeeccCC--CceeeeeeeeccCC-chHHHHHHHHHhHhhhcCCCceeeeeeeeeCC
Q psy12580         95 RHKGISLNDLSLHTKISSGPNGDTWRGRWQK--NDIVAKILAVRNCT-PRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSP  171 (239)
Q Consensus        95 ~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~--~~~~vk~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~  171 (239)
                      +...+..+++++.+.||+|..|.||.++.++  ...|+|++.+.... .....+...|..+|+.+.||.++.||+.+.++
T Consensus        70 ~~~~l~l~~f~llk~LG~GdiG~VyL~~l~~t~~~fAmKVmdK~~l~~rkKl~Ra~tE~eIL~~lDHPFlPTLYa~fet~  149 (459)
T KOG0610|consen   70 KDGSLGLRHFRLLKRLGCGDIGTVYLVELRGTNCLFAMKVMDKESLASRKKLKRAQTEREILSLLDHPFLPTLYASFETD  149 (459)
T ss_pred             CCCccCHHHHHHHHHcCCCCceeEEEEEecCCCceEEEEEecHHHHhhhhHHHHHHHHHHHHHhcCCCccchhhheeecc
Confidence            3445666888999999999999999999866  56778999776443 33446678899999999999999999999999


Q ss_pred             CceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCcccee
Q psy12580        172 PDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV  236 (239)
Q Consensus       172 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill  236 (239)
                      ...|++||||+||+|..++++++++.|++..++.++.+++-||+|||-+|  ||.|||||+||||
T Consensus       150 ~~~cl~meyCpGGdL~~LrqkQp~~~fse~~aRFYaAEvl~ALEYLHmlG--ivYRDLKPENILv  212 (459)
T KOG0610|consen  150 KYSCLVMEYCPGGDLHSLRQKQPGKRFSESAARFYAAEVLLALEYLHMLG--IVYRDLKPENILV  212 (459)
T ss_pred             ceeEEEEecCCCccHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHhhc--eeeccCCcceeEE
Confidence            99999999999999999999999999999999999999999999999999  9999999999997

>KOG0583|consensus

Probab=99.95  E-value=3.5e-28  Score=193.96  Aligned_cols=136  Identities=17%  Similarity=0.358  Sum_probs=118.5

Q ss_pred             CCCCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCC---chHHHHHHHHHhHhhhcC-CCceeeeeeeeeCCC
Q psy12580         99 ISLNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCT---PRVSRDFNEEFPKLRIFS-HPNVLPVIGCVNSPP  172 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~---~~~~~~~~~e~~~l~~l~-h~~iv~l~~~~~~~~  172 (239)
                      .....|.+.+.||+|+||.|+.|..  .+..+++|++..+...   ....+.+.+|+.+++.+. ||||++++.++....
T Consensus        14 ~~~g~y~~~~~lG~GsfgkV~~a~~~~t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~~HpnI~~l~ev~~t~~   93 (370)
T KOG0583|consen   14 LSIGKYELGRTLGSGSFGKVKLAKHRLTGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLRSHPNIIRLLEVFATPT   93 (370)
T ss_pred             cccCceeeeeeecCCCCeeEEEeeeccCCCeEEEEEechhcccccccccchhhHHHHHHHHHhccCCCEeEEEEEEecCC
Confidence            3456788999999999999999976  4678888976554221   123456678999999998 999999999999999


Q ss_pred             ceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceeec
Q psy12580        173 DLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVYI  238 (239)
Q Consensus       173 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~~  238 (239)
                      .+++||||+.+|+|++++...+  .+.+..+..+++|+++|++|+|+.|  |+||||||+|||+|-
T Consensus        94 ~~~ivmEy~~gGdL~~~i~~~g--~l~E~~ar~~F~Qlisav~y~H~~g--i~HRDLK~ENilld~  155 (370)
T KOG0583|consen   94 KIYIVMEYCSGGDLFDYIVNKG--RLKEDEARKYFRQLISAVAYCHSRG--IVHRDLKPENILLDG  155 (370)
T ss_pred             eEEEEEEecCCccHHHHHHHcC--CCChHHHHHHHHHHHHHHHHHHhCC--EeeCCCCHHHEEecC
Confidence            9999999999999999999955  6999999999999999999999999  999999999999983

>KOG0616|consensus

Probab=99.95  E-value=1.6e-28  Score=182.05  Aligned_cols=135  Identities=21%  Similarity=0.333  Sum_probs=121.0

Q ss_pred             CCCCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccC-CchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceE
Q psy12580         99 ISLNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNC-TPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLV  175 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~  175 (239)
                      ...++|+....+|.|+||.|...+.  .+.-+|+|++..+.. .-...+...+|..+|+.+.||.++++++.+.+.+.++
T Consensus        41 ~~l~dfe~~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k~~vVklKQveH~~nEk~vL~~v~~PFlv~l~~t~~d~~~ly  120 (355)
T KOG0616|consen   41 YSLQDFERLKTLGTGSFGRVHLVREKHSGNYYAMKVLDKQKVVKLKQVEHTHNEKRVLKAVSHPFLVKLYGTFKDNSNLY  120 (355)
T ss_pred             cchhhhhheeeeccCccceEEEEEEccCCceeehhhcCHHHHHHHHHHHHHhhHHHHHhhccCceeEEEEEeeccCCeEE
Confidence            4457889999999999999998876  456678899976533 2334566788999999999999999999999999999


Q ss_pred             EEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        176 VISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       176 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |||||.+||.|++++++.+  +|++..++.++.||+.||+|||+.+  |++|||||+|||||
T Consensus       121 mvmeyv~GGElFS~Lrk~~--rF~e~~arFYAAeivlAleylH~~~--iiYRDLKPENiLlD  178 (355)
T KOG0616|consen  121 MVMEYVPGGELFSYLRKSG--RFSEPHARFYAAEIVLALEYLHSLD--IIYRDLKPENLLLD  178 (355)
T ss_pred             EEEeccCCccHHHHHHhcC--CCCchhHHHHHHHHHHHHHHHHhcC--eeeccCChHHeeec
Confidence            9999999999999999987  7999999999999999999999999  99999999999998

>KOG0661|consensus

Probab=99.95  E-value=3.9e-29  Score=195.78  Aligned_cols=133  Identities=14%  Similarity=0.264  Sum_probs=116.6

Q ss_pred             CCCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcC-CCceeeeeeeeeCCC-ceE
Q psy12580        100 SLNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFS-HPNVLPVIGCVNSPP-DLV  175 (239)
Q Consensus       100 ~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~-h~~iv~l~~~~~~~~-~~~  175 (239)
                      ..+.|.+.+++|.|.||.||+|+.  .+..||+|.++.+-.. ..+-.-.+|+..|+++. ||||+++.+++.+.+ .++
T Consensus         8 ~m~RY~~i~klGDGTfGsV~la~~~~~~~~VAIK~MK~Kf~s-~ee~~nLREvksL~kln~hpniikL~Evi~d~~~~L~   86 (538)
T KOG0661|consen    8 FMDRYTVIRKLGDGTFGSVYLAKSKETGELVAIKKMKKKFYS-WEECMNLREVKSLRKLNPHPNIIKLKEVIRDNDRILY   86 (538)
T ss_pred             HHHHHHHHHHhcCCcceeEEEeeecCCCceeeHHHHHhhhcc-HHHHHHHHHHHHHHhcCCCCcchhhHHHhhccCceEe
Confidence            346788899999999999999986  4566777888765443 33445578999999998 999999999998888 999


Q ss_pred             EEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        176 VISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       176 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +|||||+. +|+++++.+ ++.|++..++.|++||++||+|+|.+|  +.|||+||+|||+.
T Consensus        87 fVfE~Md~-NLYqLmK~R-~r~fse~~irnim~QilqGL~hiHk~G--fFHRDlKPENiLi~  144 (538)
T KOG0661|consen   87 FVFEFMDC-NLYQLMKDR-NRLFSESDIRNIMYQILQGLAHIHKHG--FFHRDLKPENILIS  144 (538)
T ss_pred             eeHHhhhh-hHHHHHhhc-CCcCCHHHHHHHHHHHHHHHHHHHhcC--cccccCChhheEec
Confidence            99999976 999999988 468999999999999999999999999  99999999999985

>KOG0659|consensus

Probab=99.95  E-value=3.8e-28  Score=177.56  Aligned_cols=131  Identities=18%  Similarity=0.335  Sum_probs=119.0

Q ss_pred             CCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEee
Q psy12580        103 DLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQY  180 (239)
Q Consensus       103 ~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~  180 (239)
                      .|...+++|+|.||.||+|+.  .++.|++|.+..............+|+..|+.++|+||+.++++|...+.+.||+||
T Consensus         3 rY~~~~~lGEG~~gvVyka~d~~t~~~VAIKKIkl~~~kdGi~~talREIK~Lqel~h~nIi~LiD~F~~~~~l~lVfEf   82 (318)
T KOG0659|consen    3 RYEKLEKLGEGTYGVVYKARDTETGKRVAIKKIKLGNAKDGINRTALREIKLLQELKHPNIIELIDVFPHKSNLSLVFEF   82 (318)
T ss_pred             hhhhhhhhcCcceEEEEEEEecCCCcEEEEEEeeccccccCccHHHHHHHHHHHHccCcchhhhhhhccCCCceEEEEEe
Confidence            466788999999999999987  567888899988766656667788999999999999999999999999999999999


Q ss_pred             CCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        181 MAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       181 ~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ++. +|...++... ..++..+++.++.++++||+|+|+..  |+||||||.|+|++
T Consensus        83 m~t-dLe~vIkd~~-i~l~pa~iK~y~~m~LkGl~y~H~~~--IlHRDlKPnNLLis  135 (318)
T KOG0659|consen   83 MPT-DLEVVIKDKN-IILSPADIKSYMLMTLKGLAYCHSKW--ILHRDLKPNNLLIS  135 (318)
T ss_pred             ccc-cHHHHhcccc-cccCHHHHHHHHHHHHHHHHHHHhhh--hhcccCCccceEEc
Confidence            977 9999999866 36999999999999999999999999  99999999999997

>KOG0198|consensus

Probab=99.95  E-value=8.7e-28  Score=185.11  Aligned_cols=133  Identities=19%  Similarity=0.334  Sum_probs=116.1

Q ss_pred             CCCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCC--ceEE
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP--DLVV  176 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~--~~~l  176 (239)
                      ..++...+.+|+|+||.||.+...  +...++|.........  .+.+.+|+.+|.+++|||||+++|......  .+++
T Consensus        16 ~~~~~~~~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~~~~~--~~~l~~Ei~iL~~l~~p~IV~~~G~~~~~~~~~~~i   93 (313)
T KOG0198|consen   16 ISNWSKGKLLGRGSFGSVYLATNKKTGELMAVKSVELEDSPT--SESLEREIRILSRLNHPNIVQYYGSSSSRENDEYNI   93 (313)
T ss_pred             cchhhhhccccCccceEEEEEEecCCCcceeeeeeecccchh--HHHHHHHHHHHHhCCCCCEEeeCCccccccCeeeEe
Confidence            345678889999999999999884  4777888886652222  567899999999999999999999855444  6999


Q ss_pred             EEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceeec
Q psy12580        177 ISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVYI  238 (239)
Q Consensus       177 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~~  238 (239)
                      .|||+++|||.+++.+.++ .+++..++++.+||++||+|||++|  ||||||||+|||++.
T Consensus        94 ~mEy~~~GsL~~~~~~~g~-~l~E~~v~~ytr~iL~GL~ylHs~g--~vH~DiK~~NiLl~~  152 (313)
T KOG0198|consen   94 FMEYAPGGSLSDLIKRYGG-KLPEPLVRRYTRQILEGLAYLHSKG--IVHCDIKPANILLDP  152 (313)
T ss_pred             eeeccCCCcHHHHHHHcCC-CCCHHHHHHHHHHHHHHHHHHHhCC--EeccCcccceEEEeC
Confidence            9999999999999999876 7999999999999999999999999  999999999999985

>KOG0597|consensus

Probab=99.95  E-value=3.8e-28  Score=194.16  Aligned_cols=131  Identities=18%  Similarity=0.377  Sum_probs=119.2

Q ss_pred             CCCcccccccCCCCCCceeeccCC--CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEe
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRWQK--NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQ  179 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~~~--~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e  179 (239)
                      ++|.+.+.||+|+||.||+|+.++  +-+++|.+.+........+.+.+|+++++.++||||+.++++|++..++|+|+|
T Consensus         2 e~yhv~e~iG~Gsfg~VYKgrrK~t~~~vAik~i~K~gr~~k~l~~l~~ev~i~r~lkHpniv~m~esfEt~~~~~vVte   81 (808)
T KOG0597|consen    2 EQYHVYEMIGEGSFGRVYKGRRKYTIQVVAIKFIDKSGRNEKELKNLRQEVRILRSLKHPNIVEMLESFETSAHLWVVTE   81 (808)
T ss_pred             cchhHHHHhcCCccceeeecccccceeEEEEEEehhcCCchHHHHHHHHHHHHHHhcCCcchhhHHHhhcccceEEEEeh
Confidence            567888999999999999999854  455668887766666677889999999999999999999999999999999999


Q ss_pred             eCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       180 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||.| +|+.++...+  .++++.+..++.|++.||.|||+.+  |+|||+||+|||++
T Consensus        82 ~a~g-~L~~il~~d~--~lpEe~v~~~a~~LVsaL~yLhs~r--ilhrd~kPqniLl~  134 (808)
T KOG0597|consen   82 YAVG-DLFTILEQDG--KLPEEQVRAIAYDLVSALYYLHSNR--ILHRDMKPQNILLE  134 (808)
T ss_pred             hhhh-hHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHHHhcC--cccccCCcceeeec
Confidence            9977 9999999877  7999999999999999999999999  99999999999986

>KOG0582|consensus

Probab=99.95  E-value=2.1e-27  Score=184.85  Aligned_cols=139  Identities=17%  Similarity=0.286  Sum_probs=126.7

Q ss_pred             ccCCCCCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCc
Q psy12580         96 HKGISLNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPD  173 (239)
Q Consensus        96 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~  173 (239)
                      .+..+..+|++.++||.|..+.||+|+.  .+..|++|++....++.. .+.+.+|+..|+.+.||||++++..|..+..
T Consensus        20 ~~p~n~~~YeL~e~IG~G~sa~V~~A~c~p~~e~VAIK~inLEkc~~~-ld~l~kE~~~msl~~HPNIv~~~~sFvv~~~   98 (516)
T KOG0582|consen   20 EFPLNAKDYELQEVIGVGASAVVYLARCIPTNEVVAIKIINLEKCNND-LDALRKEVQTMSLIDHPNIVTYHCSFVVDSE   98 (516)
T ss_pred             cCCCCccceeEEEEEeccceeEeeeeeecccCCEEEEEEeehhhhhhh-HHHHHHHHHHhhhcCCCCcceEEEEEEecce
Confidence            4456779999999999999999999987  456677799988877665 6889999999999999999999999999999


Q ss_pred             eEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        174 LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +|+||.||.+||+.++++..-...+++..+..|.+++++||.|||.+|  .||||||+.|||||
T Consensus        99 LWvVmpfMa~GS~ldIik~~~~~Gl~E~~Ia~iLre~LkaL~YLH~~G--~IHRdvKAgnILi~  160 (516)
T KOG0582|consen   99 LWVVMPFMAGGSLLDIIKTYYPDGLEEASIATILREVLKALDYLHQNG--HIHRDVKAGNILID  160 (516)
T ss_pred             eEEeehhhcCCcHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHhcC--ceecccccccEEEc
Confidence            999999999999999999865567999999999999999999999999  99999999999997

>KOG0611|consensus

Probab=99.95  E-value=9.7e-28  Score=185.31  Aligned_cols=132  Identities=12%  Similarity=0.266  Sum_probs=118.8

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccC-CchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEE
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNC-TPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVIS  178 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~  178 (239)
                      ..|++.+.+|+|.||+|-+|..  .|+.|++|.+.+... +.+..-.+.+|+++|..++||||+++|++|...+.+.|||
T Consensus        53 HRyE~~etLGkGTYGKVk~A~e~~sgR~VAiKsIrKdkIkdeqDlvhIRREIeIMSsLNHPhII~IyEVFENkdKIvivM  132 (668)
T KOG0611|consen   53 HRYEITETLGKGTYGKVKLAYEHKSGREVAIKSIRKDKIKDEQDLVHIRREIEIMSSLNHPHIIQIYEVFENKDKIVIVM  132 (668)
T ss_pred             hHHHHHHHhcCCcccceeehhhccCCcEeehhhhhhhhcccHHHHHHHHHHHHHHhhcCCCceeehhhhhcCCceEEEEE
Confidence            4578889999999999999976  567788888866543 3334456789999999999999999999999999999999


Q ss_pred             eeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        179 QYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       179 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||..+|.|++|+.+.+  .+++..++.+++||.+|+.|+|..+  ++|||||.+|||+|
T Consensus       133 EYaS~GeLYDYiSer~--~LsErEaRhfFRQIvSAVhYCHknr--VvHRDLKLENILLD  187 (668)
T KOG0611|consen  133 EYASGGELYDYISERG--SLSEREARHFFRQIVSAVHYCHKNR--VVHRDLKLENILLD  187 (668)
T ss_pred             EecCCccHHHHHHHhc--cccHHHHHHHHHHHHHHHHHHhhcc--ceecccchhheeec
Confidence            9999999999999887  7999999999999999999999999  99999999999998

>KOG0594|consensus

Probab=99.95  E-value=2.4e-27  Score=180.25  Aligned_cols=134  Identities=18%  Similarity=0.260  Sum_probs=115.4

Q ss_pred             CCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCc-eeeeeeeeeCCC-----
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPN-VLPVIGCVNSPP-----  172 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~-iv~l~~~~~~~~-----  172 (239)
                      ...|...+++|+|.||.||+|+.  .|..||+|.+..............+|+.+++.++|+| |+.+++++.+.+     
T Consensus        10 ~~~~~~~eklGeGtyg~Vykar~~~~g~~VALKkirl~~~~EG~P~taiREisllk~L~~~~~iv~L~dv~~~~~~~~~~   89 (323)
T KOG0594|consen   10 MFDYEKVEKLGEGTYGVVYKARSKRTGKFVALKKIRLEFEEEGVPSTAIREISLLKRLSHANHIVRLHDVIHTSNNHRGI   89 (323)
T ss_pred             HHHHHHHHHhCCCCceEEEEEEEecCCCEEEEEEEeccccccCCCchhhHHHHHHHHhCCCcceEEEEeeeeeccccccc
Confidence            45577788899999999999987  4567888888766443344456789999999999999 999999998877     


Q ss_pred             -ceEEEEeeCCCCCHHHHhhcCCC--cccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        173 -DLVVISQYMAWGSLYALLHEGAG--IVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       173 -~~~lv~e~~~~gsL~~~l~~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                       .+++|+||++. +|..++...+.  ..++...++.++.||++||+|||+++  |+||||||+||||+
T Consensus        90 ~~l~lvfe~~d~-DL~~ymd~~~~~~~g~~~~~ik~~m~Qll~gl~~~H~~~--IlHRDLKPQNlLi~  154 (323)
T KOG0594|consen   90 GKLYLVFEFLDR-DLKKYMDSLPKKPQGLPPRLIKSFMRQLLRGLAFLHSHG--ILHRDLKPQNLLIS  154 (323)
T ss_pred             ceEEEEEEeecc-cHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHhCC--eecccCCcceEEEC
Confidence             79999999977 99999987553  35788999999999999999999999  99999999999997

>KOG0605|consensus

Probab=99.95  E-value=4e-27  Score=187.01  Aligned_cols=138  Identities=17%  Similarity=0.206  Sum_probs=122.7

Q ss_pred             cCCCCCCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCC-chHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCc
Q psy12580         97 KGISLNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCT-PRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPD  173 (239)
Q Consensus        97 ~~~~~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~  173 (239)
                      ..+..++|++...||+|+||.||.|+-+  |.-+|+|++.+.... .........|-.+|....+|.||++|-.|.+.+.
T Consensus       136 ~r~~~~DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~M~~~~Qv~hV~aERdiL~~~ds~~vVKLyYsFQD~~~  215 (550)
T KOG0605|consen  136 TRLSLDDFELLKVIGKGAFGEVRLARKKDTGEIYAMKILKKSEMLKKNQVEHVRAERDILAEVDSPWVVKLYYSFQDKEY  215 (550)
T ss_pred             ccCCcccchhheeeccccceeEEEEEEccCCcEEeeecccHHHHHhhhhHHHHHHHHHHhhhcCCCcEEEEEEEecCCCe
Confidence            3567899999999999999999999864  455666888765433 2334667889999999999999999999999999


Q ss_pred             eEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceeec
Q psy12580        174 LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVYI  238 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~~  238 (239)
                      +||||||++||++..+|...+  .+++..++.++.+++-|++.||..|  +|||||||+|+|||.
T Consensus       216 LYLiMEylPGGD~mTLL~~~~--~L~e~~arfYiaE~vlAI~~iH~~g--yIHRDIKPdNlLiD~  276 (550)
T KOG0605|consen  216 LYLIMEYLPGGDMMTLLMRKD--TLTEDWARFYIAETVLAIESIHQLG--YIHRDIKPDNLLIDA  276 (550)
T ss_pred             eEEEEEecCCccHHHHHHhcC--cCchHHHHHHHHHHHHHHHHHHHcC--cccccCChhheeecC
Confidence            999999999999999999887  7999999999999999999999999  999999999999985

>KOG0585|consensus

Probab=99.94  E-value=2.9e-27  Score=185.41  Aligned_cols=135  Identities=22%  Similarity=0.322  Sum_probs=112.3

Q ss_pred             CCCCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCch------------HHHHHHHHHhHhhhcCCCceeee
Q psy12580         99 ISLNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPR------------VSRDFNEEFPKLRIFSHPNVLPV  164 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~------------~~~~~~~e~~~l~~l~h~~iv~l  164 (239)
                      ...++|.+.+.||+|.||.|-+|+.  .+..+|+|++.+......            ..+...+|+.+|+++.|||||+|
T Consensus        94 k~lNqy~l~~eiG~G~yGkVkLar~~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl~H~nVV~L  173 (576)
T KOG0585|consen   94 KQLNQYELIKEIGSGQYGKVKLARDEVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKLHHPNVVKL  173 (576)
T ss_pred             eehhheehhhhhcCCccceEEEEeecCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhcCCcCeeEE
Confidence            4457899999999999999999886  557788899865422111            12468899999999999999999


Q ss_pred             eeeeeCCC--ceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        165 IGCVNSPP--DLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       165 ~~~~~~~~--~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +++..++.  .+|||+|||..|.+...=....  .+++.++++++++++.||+|||.+|  ||||||||+|+||+
T Consensus       174 iEvLDDP~s~~~YlVley~s~G~v~w~p~d~~--els~~~Ar~ylrDvv~GLEYLH~Qg--iiHRDIKPsNLLl~  244 (576)
T KOG0585|consen  174 IEVLDDPESDKLYLVLEYCSKGEVKWCPPDKP--ELSEQQARKYLRDVVLGLEYLHYQG--IIHRDIKPSNLLLS  244 (576)
T ss_pred             EEeecCcccCceEEEEEeccCCccccCCCCcc--cccHHHHHHHHHHHHHHHHHHHhcC--eeccccchhheEEc
Confidence            99997765  8999999999988654333322  3899999999999999999999999  99999999999986

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.94  E-value=7.2e-27  Score=189.27  Aligned_cols=131  Identities=13%  Similarity=0.127  Sum_probs=115.0

Q ss_pred             CCcccccccCCCCCCceeecc--CCCceeeeeeeeccC-CchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEe
Q psy12580        103 DLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNC-TPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQ  179 (239)
Q Consensus       103 ~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e  179 (239)
                      +|.+.+.||+|+||.||++..  .+..+++|++..... .....+.+.+|+.++..++||||+++++++..++..++|||
T Consensus         2 ~y~~~~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~E   81 (377)
T cd05629           2 DFHTVKVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAESDSPWVVSLYYSFQDAQYLYLIME   81 (377)
T ss_pred             CceEeEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHHHHhHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCeeEEEEe
Confidence            577889999999999999876  456778888755322 23344668889999999999999999999999999999999


Q ss_pred             eCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       180 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |+++|+|.+++....  .+++..+..++.|++.||+|||+.+  |+||||||+|||++
T Consensus        82 ~~~gg~L~~~l~~~~--~~~~~~~~~~~~ql~~aL~~LH~~g--ivHrDlkp~NIll~  135 (377)
T cd05629          82 FLPGGDLMTMLIKYD--TFSEDVTRFYMAECVLAIEAVHKLG--FIHRDIKPDNILID  135 (377)
T ss_pred             CCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCC--eeccCCCHHHEEEC
Confidence            999999999998765  6899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=99.94  E-value=1.2e-26  Score=188.15  Aligned_cols=131  Identities=11%  Similarity=0.122  Sum_probs=115.4

Q ss_pred             CCcccccccCCCCCCceeecc--CCCceeeeeeeeccC-CchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEe
Q psy12580        103 DLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNC-TPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQ  179 (239)
Q Consensus       103 ~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e  179 (239)
                      .|...+.||+|+||.||+|..  .+..+++|++..... .......+..|+.++..++||||+++++++...+.+++|||
T Consensus         2 ~f~~~~~LG~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~l~~~~~~~~~~~lv~E   81 (381)
T cd05626           2 MFVKIKTLGIGAFGEVCLACKVDTHALYAMKTLRKKDVLNRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMD   81 (381)
T ss_pred             CceEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhcCCCCeeeeEEEEecCCEEEEEEe
Confidence            467888999999999999987  346678888865432 23344678899999999999999999999999999999999


Q ss_pred             eCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       180 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |+++|+|.+++....  .+++..+..++.|++.||+|||+.+  |+||||||+|||++
T Consensus        82 ~~~gg~L~~~l~~~~--~~~e~~~~~~~~qi~~aL~~LH~~g--ivHrDlKp~Nili~  135 (381)
T cd05626          82 YIPGGDMMSLLIRME--VFPEVLARFYIAELTLAIESVHKMG--FIHRDIKPDNILID  135 (381)
T ss_pred             cCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCC--eeecCCcHHHEEEC
Confidence            999999999998765  6899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=99.94  E-value=1.7e-26  Score=184.55  Aligned_cols=137  Identities=23%  Similarity=0.366  Sum_probs=113.5

Q ss_pred             CCCCCCCcccccccCCCCCCceeecc-------CCCceeeeeeeeccCCchHHHHHHHHHhHhhhc-CCCceeeeeeeee
Q psy12580         98 GISLNDLSLHTKISSGPNGDTWRGRW-------QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIF-SHPNVLPVIGCVN  169 (239)
Q Consensus        98 ~~~~~~~~~~~~ig~g~~g~v~~~~~-------~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~l~~~~~  169 (239)
                      .++.++|.+.+.||+|+||.||+|.+       .+..+++|.+... ........+.+|+.++..+ +||||+++++++.
T Consensus         3 ~~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~   81 (338)
T cd05102           3 EFPRDRLRLGKVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEG-ATASEHKALMSELKILIHIGNHLNVVNLLGACT   81 (338)
T ss_pred             ccchhHceeeeEeccCCcceEEEEEEeccCCcccchhhheeccccc-cchHHHHHHHHHHHHHHHhccCcceeeEEeEec
Confidence            45667889999999999999999964       1245777887543 2333446788999999999 8999999999887


Q ss_pred             CCC-ceEEEEeeCCCCCHHHHhhcCC------------------------------------------------------
Q psy12580        170 SPP-DLVVISQYMAWGSLYALLHEGA------------------------------------------------------  194 (239)
Q Consensus       170 ~~~-~~~lv~e~~~~gsL~~~l~~~~------------------------------------------------------  194 (239)
                      ..+ .++++|||+++|+|.+++....                                                      
T Consensus        82 ~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (338)
T cd05102          82 KPNGPLMVIVEFCKYGNLSNFLRAKREFFSPYREKSPKQRGRFRAMVEQSRVDRRIEAGQASVLFSRFQPSTSGSTNPPQ  161 (338)
T ss_pred             CCCCceEEEEecCCCCcHHHHHHhcchhcccccccchhhhhhhhhhhhhhccccccccccCCccccccccccCcccccch
Confidence            644 6899999999999999997532                                                      


Q ss_pred             ------CcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        195 ------GIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       195 ------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                            ...+++..+..++.|+++||+|||+.+  |+||||||+|||++
T Consensus       162 ~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~--ivHrDiKp~Nil~~  208 (338)
T cd05102         162 ETDDLWKSPLTMEDLICYSFQVARGMEFLASRK--CIHRDLAARNILLS  208 (338)
T ss_pred             hccccccCCCCHHHHHHHHHHHHHHHHHHHHCC--EECCCCccceEEEc
Confidence                  124778889999999999999999999  99999999999986

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.94  E-value=8.8e-27  Score=187.97  Aligned_cols=132  Identities=14%  Similarity=0.139  Sum_probs=116.1

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccC-CchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEE
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNC-TPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVIS  178 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~  178 (239)
                      ++|.+.+.||+|+||.||++..  .+..+++|++..... .......+.+|+.++..++||||+++++++..++..++||
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~   80 (364)
T cd05599           1 DDFESIKVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEADNPWVVKLYYSFQDENYLYLIM   80 (364)
T ss_pred             CCceEEEEEEecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCeEEEEE
Confidence            3678889999999999999987  456788888865432 2233456788999999999999999999999999999999


Q ss_pred             eeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        179 QYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       179 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||+++|+|.+++....  .+++..+..++.|++.||+|||+.+  |+||||||+|||++
T Consensus        81 E~~~~g~L~~~l~~~~--~l~~~~~~~~~~qi~~aL~~lH~~~--ivH~Dlkp~NIl~~  135 (364)
T cd05599          81 EYLPGGDMMTLLMKKD--TFTEEETRFYIAETILAIDSIHKLG--YIHRDIKPDNLLLD  135 (364)
T ss_pred             CCCCCcHHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCC--eEeccCCHHHeEEC
Confidence            9999999999998765  6899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>KOG0663|consensus

Probab=99.94  E-value=3.7e-27  Score=177.54  Aligned_cols=133  Identities=17%  Similarity=0.244  Sum_probs=112.8

Q ss_pred             CCCCcccccccCCCCCCceeeccCC--CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCC--CceEE
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRWQK--NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSP--PDLVV  176 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~~~--~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~--~~~~l  176 (239)
                      .++|+..+.|++|.||.||+|+...  .-||+|.++.........-..++|+.+|.+++|||||.+-.+....  +.+||
T Consensus        75 v~efe~lnrI~EGtyGiVYRakdk~t~eIVALKr~kmekek~GFPItsLREIniLl~~~H~NIV~vkEVVvG~~~d~iy~  154 (419)
T KOG0663|consen   75 VEEFEKLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINILLKARHPNIVEVKEVVVGSNMDKIYI  154 (419)
T ss_pred             HHHHHHHhhcccCcceeEEEeccCCcceeEEeeecccccccCCCcchhHHHHHHHHhcCCCCeeeeEEEEeccccceeee
Confidence            4678888999999999999999843  3445577766544444445578999999999999999998877554  48999


Q ss_pred             EEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        177 ISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       177 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |||||++ +|.+++..-+ ++|...+++.++.|+++|++|||...  |+||||||+|+|+.
T Consensus       155 VMe~~Eh-DLksl~d~m~-q~F~~~evK~L~~QlL~glk~lH~~w--ilHRDLK~SNLLm~  211 (419)
T KOG0663|consen  155 VMEYVEH-DLKSLMETMK-QPFLPGEVKTLMLQLLRGLKHLHDNW--ILHRDLKTSNLLLS  211 (419)
T ss_pred             eHHHHHh-hHHHHHHhcc-CCCchHHHHHHHHHHHHHHHHHhhce--eEecccchhheeec
Confidence            9999988 9999998765 47999999999999999999999999  99999999999974

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=99.94  E-value=1.3e-26  Score=186.81  Aligned_cols=132  Identities=13%  Similarity=0.141  Sum_probs=115.6

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCC-chHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEE
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCT-PRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVIS  178 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~  178 (239)
                      ++|+..+.||+|+||.||++..  .+..+++|++...... ......+..|..++..++||+|+++++.+.....+++||
T Consensus         1 ~~y~~~~~LG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~~~~~~iv~~~~~~~~~~~~~lv~   80 (363)
T cd05628           1 EDFESLKVIGRGAFGEVRLVQKKDTGHVYAMKILRKADMLEKEQVGHIRAERDILVEADSLWVVKMFYSFQDKLNLYLIM   80 (363)
T ss_pred             CCceEeEEEEeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHhCCCCCcceEEEEEecCCeEEEEE
Confidence            3678889999999999999986  3567888888654322 233456788999999999999999999999999999999


Q ss_pred             eeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        179 QYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       179 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||+++|+|.+++....  .+++..+..++.|++.||+|||+.|  |+||||||+|||++
T Consensus        81 E~~~gg~L~~~l~~~~--~l~~~~~~~~~~qi~~aL~~lH~~g--ivHrDlKp~NILi~  135 (363)
T cd05628          81 EFLPGGDMMTLLMKKD--TLTEEETQFYIAETVLAIDSIHQLG--FIHRDIKPDNLLLD  135 (363)
T ss_pred             cCCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCC--eEecCCCHHHeEEC
Confidence            9999999999998765  6899999999999999999999999  99999999999996

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=99.94  E-value=2.8e-26  Score=177.38  Aligned_cols=135  Identities=20%  Similarity=0.368  Sum_probs=115.7

Q ss_pred             CCCCCCcccccccCCCCCCceeeccC-----CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCc
Q psy12580         99 ISLNDLSLHTKISSGPNGDTWRGRWQ-----KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPD  173 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g~~g~v~~~~~~-----~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~  173 (239)
                      +...+|++.+.||+|+||.||+|.++     +..+++|.+.... .......+.+|+..+.+++||||+++++++..++.
T Consensus         2 i~~~~~~~~~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~   80 (266)
T cd05064           2 LDNKSIKIERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGC-SDKQRRGFLAEALTLGQFDHSNIVRLEGVITRGNT   80 (266)
T ss_pred             CchHHeEEeeeecccCCCeEEEEEEecCCCceeeEEEEecCCCC-CHHHHHHHHHHHHHHhcCCCCCcCeEEEEEecCCC
Confidence            45567889999999999999999753     2356667765432 23344678899999999999999999999999999


Q ss_pred             eEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        174 LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .++||||+++|+|.+++....+ .+++..++.++.|++.||+|||+.+  ++||||||+|||++
T Consensus        81 ~~lv~e~~~~~~L~~~l~~~~~-~l~~~~~~~~~~~i~~al~~lH~~~--iiH~dikp~nili~  141 (266)
T cd05064          81 MMIVTEYMSNGALDSFLRKHEG-QLVAGQLMGMLPGLASGMKYLSEMG--YVHKGLAAHKVLVN  141 (266)
T ss_pred             cEEEEEeCCCCcHHHHHHhCCC-CCCHHHHHHHHHHHHHHHHHHHHCC--EeeccccHhhEEEc
Confidence            9999999999999999987542 5899999999999999999999999  99999999999986

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=99.94  E-value=1.8e-26  Score=183.64  Aligned_cols=135  Identities=16%  Similarity=0.257  Sum_probs=118.5

Q ss_pred             CCCCCCcccccccCCCCCCceeeccC--CCceeeeeeeeccC-CchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceE
Q psy12580         99 ISLNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNC-TPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLV  175 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~  175 (239)
                      ....+|.+.+.||+|+||.||+|...  +..+++|++..... .....+.+.+|+.++..++||||+++++++...+..+
T Consensus        15 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~   94 (329)
T PTZ00263         15 WKLSDFEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSILMELSHPFIVNMMCSFQDENRVY   94 (329)
T ss_pred             CCchheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCcEEEEEEcCCEEE
Confidence            44578899999999999999999874  46678888865432 2233466889999999999999999999999999999


Q ss_pred             EEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        176 VISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       176 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +||||+.+|+|.+++....  .+++..+..++.|++.||+|||+.+  |+||||||+|||++
T Consensus        95 lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~~--ivH~dlkp~NIll~  152 (329)
T PTZ00263         95 FLLEFVVGGELFTHLRKAG--RFPNDVAKFYHAELVLAFEYLHSKD--IIYRDLKPENLLLD  152 (329)
T ss_pred             EEEcCCCCChHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCC--eeecCCCHHHEEEC
Confidence            9999999999999998765  6899999999999999999999999  99999999999996

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=99.94  E-value=1.9e-26  Score=184.02  Aligned_cols=137  Identities=13%  Similarity=0.247  Sum_probs=118.7

Q ss_pred             cCCCCCCCcccccccCCCCCCceeeccCC---CceeeeeeeeccC-CchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCC
Q psy12580         97 KGISLNDLSLHTKISSGPNGDTWRGRWQK---NDIVAKILAVRNC-TPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP  172 (239)
Q Consensus        97 ~~~~~~~~~~~~~ig~g~~g~v~~~~~~~---~~~~vk~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~  172 (239)
                      ..+...+|.+.+.||+|+||.||+|.+.+   ..+++|.+..... .....+.+.+|+.++..++||||+++++++...+
T Consensus        25 ~~~~~~~y~~~~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~  104 (340)
T PTZ00426         25 NKMKYEDFNFIRTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKIIKQKQVDHVFSERKILNYINHPFCVNLYGSFKDES  104 (340)
T ss_pred             CCCChhhcEEEEEEeecCCeEEEEEEEECCCCeEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCCcceEEEEEeCC
Confidence            34566789999999999999999998633   3577787754322 2334466888999999999999999999999999


Q ss_pred             ceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        173 DLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       173 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ..++||||+++|+|.+++....  .+++..+..++.|++.||.|||+.+  |+||||||+|||++
T Consensus       105 ~~~lv~Ey~~~g~L~~~i~~~~--~~~~~~~~~~~~qi~~aL~~LH~~~--ivHrDLkp~NILl~  165 (340)
T PTZ00426        105 YLYLVLEFVIGGEFFTFLRRNK--RFPNDVGCFYAAQIVLIFEYLQSLN--IVYRDLKPENLLLD  165 (340)
T ss_pred             EEEEEEeCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCC--eEccCCCHHHEEEC
Confidence            9999999999999999998766  6899999999999999999999999  99999999999986

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=99.94  E-value=2e-26  Score=186.63  Aligned_cols=132  Identities=12%  Similarity=0.135  Sum_probs=115.1

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccC-CchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEE
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNC-TPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVIS  178 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~  178 (239)
                      ++|.+.+.||+|+||.||++..  .+..+++|++..... .......+.+|+.++..++||||+++++.+..++.+++||
T Consensus         1 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~   80 (376)
T cd05598           1 SMFVKIKTIGIGAFGEVCLVRKVDTNALYAMKTLRKADVLMRNQAAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVM   80 (376)
T ss_pred             CCceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEcHHHHHhhhhHHHHHHHHHHHHhCCCCCcceEEEEEEcCCEEEEEE
Confidence            3678889999999999999986  356778888754322 1223456788999999999999999999999999999999


Q ss_pred             eeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        179 QYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       179 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||+++|+|.+++....  .+++..+..++.||+.||+|||+.+  |+||||||+|||++
T Consensus        81 E~~~~g~L~~~i~~~~--~~~~~~~~~~~~qi~~al~~lH~~~--ivHrDlkp~Nill~  135 (376)
T cd05598          81 DYIPGGDMMSLLIRLG--IFEEDLARFYIAELTCAIESVHKMG--FIHRDIKPDNILID  135 (376)
T ss_pred             eCCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCC--eEeCCCCHHHEEEC
Confidence            9999999999998765  6899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=99.94  E-value=1.6e-26  Score=180.94  Aligned_cols=131  Identities=19%  Similarity=0.307  Sum_probs=115.2

Q ss_pred             CCcccccccCCCCCCceeeccC--CCceeeeeeeeccC-CchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEe
Q psy12580        103 DLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNC-TPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQ  179 (239)
Q Consensus       103 ~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e  179 (239)
                      +|.+.+.||+|+||.||++...  +..+++|++..... .....+.+.+|+.+++.++||||+++++++...+..++|||
T Consensus         2 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e   81 (291)
T cd05612           2 DLERIKTVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHPFIIRLFWTEHDQRFLYMLME   81 (291)
T ss_pred             CceeeeeeecCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCcHhhhHhhhccCCeEEEEEe
Confidence            5778899999999999999874  56788888865432 22334568889999999999999999999999999999999


Q ss_pred             eCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       180 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |+++|+|.+++....  .+++..+..++.|++.||+|||+.|  |+||||||+|||++
T Consensus        82 ~~~~~~L~~~~~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~--i~H~dlkp~NIli~  135 (291)
T cd05612          82 YVPGGELFSYLRNSG--RFSNSTGLFYASEIVCALEYLHSKE--IVYRDLKPENILLD  135 (291)
T ss_pred             CCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCC--eeecCCCHHHeEEC
Confidence            999999999998765  6899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=99.94  E-value=3.5e-26  Score=185.54  Aligned_cols=131  Identities=12%  Similarity=0.138  Sum_probs=114.4

Q ss_pred             CCcccccccCCCCCCceeecc--CCCceeeeeeeeccC-CchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEe
Q psy12580        103 DLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNC-TPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQ  179 (239)
Q Consensus       103 ~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e  179 (239)
                      .|...+.||+|+||.||+|..  .+..+++|.+..... .......+.+|+.+++.++||||+++++.+...+.+++|||
T Consensus         2 ~f~~~~~LG~G~~g~Vy~a~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~~~h~~iv~~~~~~~~~~~~~lv~E   81 (382)
T cd05625           2 MFVKIKTLGIGAFGEVCLARKVDTKALYAMKTLRKKDVLLRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFVMD   81 (382)
T ss_pred             CcEEEEEEEeCCCEEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhCCCCcCCeEEEEEEeCCEEEEEEe
Confidence            467788999999999999987  345677788765432 22334678889999999999999999999999999999999


Q ss_pred             eCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       180 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |+++|+|.+++.+..  .+++..+..++.||+.||+|||+.+  |+||||||+|||++
T Consensus        82 ~~~gg~L~~~l~~~~--~~~e~~~~~~~~qi~~al~~lH~~~--ivHrDlKp~NILl~  135 (382)
T cd05625          82 YIPGGDMMSLLIRMG--IFPEDLARFYIAELTCAVESVHKMG--FIHRDIKPDNILID  135 (382)
T ss_pred             CCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCCHHHEEEC
Confidence            999999999998765  6899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=99.93  E-value=1.3e-25  Score=176.84  Aligned_cols=135  Identities=24%  Similarity=0.372  Sum_probs=113.2

Q ss_pred             CCCCCcccccccCCCCCCceeeccCC------------------CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCce
Q psy12580        100 SLNDLSLHTKISSGPNGDTWRGRWQK------------------NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNV  161 (239)
Q Consensus       100 ~~~~~~~~~~ig~g~~g~v~~~~~~~------------------~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i  161 (239)
                      ...+|.+.+.||+|+||.||++.+++                  ..+++|.+... ........+.+|+.++.+++||||
T Consensus         3 ~~~~~~~~~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~~E~~~l~~l~h~ni   81 (304)
T cd05096           3 PRGHLLFKEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPD-ANKNARNDFLKEVKILSRLKDPNI   81 (304)
T ss_pred             chhhCeeeeEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCC-CCHHHHHHHHHHHHHHhhcCCCCe
Confidence            34678888999999999999997532                  24677777543 223345678899999999999999


Q ss_pred             eeeeeeeeCCCceEEEEeeCCCCCHHHHhhcCC-----------------CcccCHHHHHHHHHHHHHHhhhhhcCCCCc
Q psy12580        162 LPVIGCVNSPPDLVVISQYMAWGSLYALLHEGA-----------------GIVVDFAQALRFAVDVARGMAFLHSLERII  224 (239)
Q Consensus       162 v~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~-----------------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~i  224 (239)
                      +++++++...+..++||||+++|+|.+++....                 ...+++..+..++.|++.||.|||+.+  |
T Consensus        82 v~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~--i  159 (304)
T cd05096          82 IRLLGVCVDEDPLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLSSLN--F  159 (304)
T ss_pred             eEEEEEEecCCceEEEEecCCCCcHHHHHHhccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHCC--c
Confidence            999999999899999999999999999986532                 124678889999999999999999999  9


Q ss_pred             ccCCCCCccceee
Q psy12580        225 PQYQLNSRHVMVY  237 (239)
Q Consensus       225 vHrdikp~Nill~  237 (239)
                      +||||||+|||++
T Consensus       160 vH~dlkp~Nill~  172 (304)
T cd05096         160 VHRDLATRNCLVG  172 (304)
T ss_pred             cccCcchhheEEc
Confidence            9999999999986

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=99.93  E-value=6.9e-26  Score=180.65  Aligned_cols=131  Identities=15%  Similarity=0.168  Sum_probs=115.6

Q ss_pred             CCcccccccCCCCCCceeeccC--CCceeeeeeeeccCC-chHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEe
Q psy12580        103 DLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCT-PRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQ  179 (239)
Q Consensus       103 ~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e  179 (239)
                      +|.+.+.||+|+||.||+|...  +..+++|++...... ......+..|+.++..++||||+++++++...+..++|||
T Consensus         2 ~y~~~~~ig~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   81 (333)
T cd05600           2 DFQILTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKSEWLVKLLYAFQDDEYLYLAME   81 (333)
T ss_pred             CcEEEEEEeecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhCCCCCCccEEEEEEcCCEEEEEEe
Confidence            5788899999999999999874  567788888654322 2334568889999999999999999999999999999999


Q ss_pred             eCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       180 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |+++|+|.+++....  .+++..+..++.|++.||.|||+.+  |+||||||+|||++
T Consensus        82 ~~~g~~L~~~l~~~~--~l~~~~~~~~~~qi~~~l~~lH~~~--ivH~dlkp~Nil~~  135 (333)
T cd05600          82 YVPGGDFRTLLNNLG--VLSEDHARFYMAEMFEAVDALHELG--YIHRDLKPENFLID  135 (333)
T ss_pred             CCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCC--ccccCCCHHHEEEC
Confidence            999999999998765  6899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>KOG0658|consensus

Probab=99.93  E-value=5.9e-27  Score=178.40  Aligned_cols=125  Identities=21%  Similarity=0.346  Sum_probs=102.9

Q ss_pred             CcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCC-----ceEE
Q psy12580        104 LSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP-----DLVV  176 (239)
Q Consensus       104 ~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~-----~~~l  176 (239)
                      |...+++|+|+||.||+|..  .+..+|+|.......      --.+|+.+|+.+.|||||++.-+|....     ...+
T Consensus        26 ~~~~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~r------~knrEl~im~~l~HpNIV~L~~~f~~~~~~d~~~lnl   99 (364)
T KOG0658|consen   26 YEAVRLIGSGSFGVVYQAKLRETEEEVAIKKVLQDKR------YKNRELQIMRKLDHPNIVRLLYFFSSSTESDEVYLNL   99 (364)
T ss_pred             EEeeEEEeecccceEEEEEEcCCCceeEEEEecCCCC------cCcHHHHHHHhcCCcCeeeEEEEEEecCCCchhHHHH
Confidence            45667899999999999987  346778866643321      2347899999999999999988774432     4679


Q ss_pred             EEeeCCCCCHHHHhhcC--CCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        177 ISQYMAWGSLYALLHEG--AGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       177 v~e~~~~gsL~~~l~~~--~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||||++. +|.++++.-  .+..++...++.+..||.+||.|||+.|  |+||||||+|+|+|
T Consensus       100 VleymP~-tL~~~~r~~~~~~~~mp~~~iKLYt~Qlfrgl~yLh~~~--IcHRDIKPqNlLvD  159 (364)
T KOG0658|consen  100 VLEYMPE-TLYRVIRHYTRANQRMPLLEIKLYTYQLFRGLAYLHSHG--ICHRDIKPQNLLVD  159 (364)
T ss_pred             HHHhchH-HHHHHHHHHhhcCCCCceeeeHHHHHHHHHHHHHHHhcC--cccCCCChheEEEc
Confidence            9999988 999999851  2236899999999999999999999999  99999999999998

>KOG0589|consensus

Probab=99.93  E-value=4.2e-26  Score=180.52  Aligned_cols=135  Identities=18%  Similarity=0.314  Sum_probs=122.2

Q ss_pred             CCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCc-eEEE
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPD-LVVI  177 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~-~~lv  177 (239)
                      .++|...+.+|+|+||.++..+.  .+..+++|.+.....+....+...+|+.+++++.|||||.+.+.|..++. .+||
T Consensus         3 m~~Ye~~~~iG~GafG~a~lvrhk~~~~~~vlK~I~l~~~t~~~r~~A~~E~~lis~~~hP~iv~y~ds~~~~~~~l~Iv   82 (426)
T KOG0589|consen    3 MDNYEVLRQVGRGAFGSALLVRHKSDDKLYVLKKINLEKLTEPERRSAIQEMDLLSKLLHPNIVEYKDSFEEDGQLLCIV   82 (426)
T ss_pred             cchhhhhhhcCccccchhhhhhhccCCceEEEEEEeccccCchhhHHHHHHHHHHHhccCCCeeeeccchhcCCceEEEE
Confidence            46788899999999999887765  45678889988877777777788999999999999999999999988887 9999


Q ss_pred             EeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        178 SQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       178 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |+||+||++.+.+.++.+..|+++.+..|+.|++.|+.|||+..  |+|||||+.|||++
T Consensus        83 m~Y~eGg~l~~~i~~~k~~~f~E~~i~~~~~Q~~~av~ylH~~~--iLHRDlK~~Niflt  140 (426)
T KOG0589|consen   83 MEYCEGGDLAQLIKEQKGVLFPEERILKWFVQILLAVNYLHENR--VLHRDLKCANIFLT  140 (426)
T ss_pred             EeecCCCCHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhhh--hhcccchhhhhhcc
Confidence            99999999999999887778999999999999999999999988  99999999999986

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=99.93  E-value=6.3e-26  Score=183.00  Aligned_cols=135  Identities=18%  Similarity=0.202  Sum_probs=115.7

Q ss_pred             CCCCCCCcccccccCCCCCCceeeccC--CCceeeeeeeeccC-CchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCce
Q psy12580         98 GISLNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNC-TPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDL  174 (239)
Q Consensus        98 ~~~~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~  174 (239)
                      .....+|++.+.||+|+||.||++...  +..+++|++..... .......+.+|..+++.++||||+++++++..++.+
T Consensus        39 ~~~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~~~  118 (370)
T cd05621          39 QMKAEDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFCAFQDDKYL  118 (370)
T ss_pred             CCCHHHCeEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEE
Confidence            344577889999999999999999874  45677788754322 222335577899999999999999999999999999


Q ss_pred             EEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        175 VVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       175 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ++||||+++|+|.+++...   .+++..+..++.||+.||+|||+.+  |+||||||+|||++
T Consensus       119 ~lv~Ey~~gg~L~~~l~~~---~~~~~~~~~~~~qil~aL~~LH~~~--IvHrDLKp~NILl~  176 (370)
T cd05621         119 YMVMEYMPGGDLVNLMSNY---DVPEKWAKFYTAEVVLALDAIHSMG--LIHRDVKPDNMLLD  176 (370)
T ss_pred             EEEEcCCCCCcHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHHCC--eEecCCCHHHEEEC
Confidence            9999999999999999764   3889999999999999999999999  99999999999996

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=99.93  E-value=7.8e-26  Score=179.58  Aligned_cols=126  Identities=17%  Similarity=0.184  Sum_probs=110.2

Q ss_pred             ccccCCCCCCceeecc--CCCceeeeeeeeccC-CchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEeeCCCC
Q psy12580        108 TKISSGPNGDTWRGRW--QKNDIVAKILAVRNC-TPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWG  184 (239)
Q Consensus       108 ~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~~~g  184 (239)
                      +.||+|+||.||++..  .+..+++|++..... .......+..|+.++..++||||+++++++...+..++||||+++|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~~~~~   80 (323)
T cd05571           1 KLLGKGTFGKVILVREKATGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPFLTALKYSFQTHDRLCFVMEYANGG   80 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCCEEEEEEcCCEEEEEEeCCCCC
Confidence            3689999999999976  456788888865432 2233456778999999999999999999999999999999999999


Q ss_pred             CHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        185 SLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       185 sL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +|.+++....  .+++..+..++.||+.||+|||+.|  |+||||||+|||++
T Consensus        81 ~L~~~l~~~~--~~~~~~~~~~~~qi~~~L~~lH~~~--ivHrDlkp~NIll~  129 (323)
T cd05571          81 ELFFHLSRER--VFSEDRARFYGAEIVSALGYLHSCD--VVYRDLKLENLMLD  129 (323)
T ss_pred             cHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHhCC--eEeCCCCHHHEEEC
Confidence            9999998765  6899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>KOG1989|consensus

Probab=99.93  E-value=5.3e-26  Score=189.96  Aligned_cols=141  Identities=16%  Similarity=0.235  Sum_probs=120.2

Q ss_pred             cccCCCCCCCcccccccCCCCCCceeeccCC--CceeeeeeeeccCCchHHHHHHHHHhHhhhcC-CCceeeeeeee-eC
Q psy12580         95 RHKGISLNDLSLHTKISSGPNGDTWRGRWQK--NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFS-HPNVLPVIGCV-NS  170 (239)
Q Consensus        95 ~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~--~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~-h~~iv~l~~~~-~~  170 (239)
                      +...+....+.+.+.|.+|+|+.||.|+..+  .++|+|.+...  +....+.+.+|+.+|+.|+ |+|||.+++.. ..
T Consensus        30 ~~~~Vg~~~v~V~~vLAEGGFa~VYla~~~~~~~~~AlKrm~~~--de~~L~~v~~EI~~MK~L~gh~nIV~yidss~~~  107 (738)
T KOG1989|consen   30 QTFTVGSHRVTVEKVLAEGGFAQVYLAQDVKGGKKYALKRMYVN--DEEALNAVKREIDIMKLLSGHKNIVSYIDSSAIN  107 (738)
T ss_pred             eEEEECCEEEEEEEEEccCCcEEEEEEEecCCCceeeeeeeecC--CHHHHHHHHHHHHHHHHhcCCCceeeEecccccc
Confidence            4455666778899999999999999999843  67788887654  5666788999999999995 99999999932 21


Q ss_pred             C------CceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        171 P------PDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       171 ~------~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .      -++.|.||||.+|+|-+++..+....|++.++++|+.|+++|+.+||...+||||||||-|||||+
T Consensus       108 ~~~~~~~~EvllLmEyC~gg~Lvd~mn~Rlq~~lte~eVLkIf~dv~~AVa~mH~~~pPiIHRDLKiENvLls  180 (738)
T KOG1989|consen  108 RSSNNGVWEVLLLMEYCKGGSLVDFMNTRLQTRLTEDEVLKIFYDVCEAVAAMHYLKPPIIHRDLKIENVLLS  180 (738)
T ss_pred             ccCCCceeEEEeehhhccCCcHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcCCCccchhhhhhhheEEc
Confidence            1      268899999999999999986554469999999999999999999999999999999999999996

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=99.93  E-value=1.1e-25  Score=182.10  Aligned_cols=139  Identities=22%  Similarity=0.355  Sum_probs=116.3

Q ss_pred             ccCCCCCCCcccccccCCCCCCceeecc-------CCCceeeeeeeeccCCchHHHHHHHHHhHhhhc-CCCceeeeeee
Q psy12580         96 HKGISLNDLSLHTKISSGPNGDTWRGRW-------QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIF-SHPNVLPVIGC  167 (239)
Q Consensus        96 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~-------~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~l~~~  167 (239)
                      .+.++.++|.+.+.||+|+||.||+|.+       .+..+++|++.... .....+.+.+|+.++..+ +||||++++++
T Consensus        29 ~~~~~~~~~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~-~~~~~~~~~~Ei~il~~l~~HpnIv~l~~~  107 (375)
T cd05104          29 KWEFPRNRLSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSA-HLTEREALMSELKVLSYLGNHINIVNLLGA  107 (375)
T ss_pred             ccccchHHeehhheecCCccceEEEEEEeccccCccceeEEEEeccCCc-CcHHHHHHHHHHHHHHHhcCCcceeeeeee
Confidence            3455667899999999999999999864       12357778775432 233446788999999999 89999999999


Q ss_pred             eeCCCceEEEEeeCCCCCHHHHhhcCC-----------------------------------------------------
Q psy12580        168 VNSPPDLVVISQYMAWGSLYALLHEGA-----------------------------------------------------  194 (239)
Q Consensus       168 ~~~~~~~~lv~e~~~~gsL~~~l~~~~-----------------------------------------------------  194 (239)
                      +...+..++||||+++|+|.++++...                                                     
T Consensus       108 ~~~~~~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  187 (375)
T cd05104         108 CTVGGPTLVITEYCCYGDLLNFLRRKRDSFICPKHEDHAEAALYKNLLHQREMSCDSLNEYMDMKPGVSYVVPTKADKRR  187 (375)
T ss_pred             eccCCcceeeehhccCCcHHHHHHhcccccccccccchhhhHHHHhhhhhhcccchhhhhhhhcCCCccccccccccccc
Confidence            999999999999999999999997532                                                     


Q ss_pred             --------------------CcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        195 --------------------GIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       195 --------------------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                                          ...+++..+..++.||++||.|||+.+  |+||||||+|||++
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~--ivH~Dlkp~Nill~  248 (375)
T cd05104         188 SVRSGSYIDQDVTSEILEEDELALDTEDLLSFSYQVAKGMSFLASKN--CIHRDLAARNILLT  248 (375)
T ss_pred             ccccceecccccHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCC--eeccCCchhhEEEE
Confidence                                114788899999999999999999999  99999999999986

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=99.93  E-value=1.1e-25  Score=178.77  Aligned_cols=126  Identities=17%  Similarity=0.179  Sum_probs=110.1

Q ss_pred             ccccCCCCCCceeecc--CCCceeeeeeeeccC-CchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEeeCCCC
Q psy12580        108 TKISSGPNGDTWRGRW--QKNDIVAKILAVRNC-TPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWG  184 (239)
Q Consensus       108 ~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~~~g  184 (239)
                      +.||+|+||.||++..  .+..+++|.+..... .......+..|+.+++.++||||+++++++...+..++||||+++|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i~~~~~~~~~~~~~~lv~E~~~~~   80 (323)
T cd05595           1 KLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGG   80 (323)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCcceeeEEecCCEEEEEEeCCCCC
Confidence            3689999999999986  456788888865432 2333456778999999999999999999999999999999999999


Q ss_pred             CHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        185 SLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       185 sL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +|..++....  .+++..++.++.|++.||.|||+.+  |+||||||+|||++
T Consensus        81 ~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~~--ivH~Dlkp~NIll~  129 (323)
T cd05595          81 ELFFHLSRER--VFTEERARFYGAEIVSALEYLHSRD--VVYRDIKLENLMLD  129 (323)
T ss_pred             cHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCC--eEecCCCHHHEEEc
Confidence            9999988765  6899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=99.93  E-value=1.7e-25  Score=178.01  Aligned_cols=130  Identities=18%  Similarity=0.301  Sum_probs=111.9

Q ss_pred             ccccccCC--CCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEeeC
Q psy12580        106 LHTKISSG--PNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYM  181 (239)
Q Consensus       106 ~~~~ig~g--~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~  181 (239)
                      +.++||+|  +|+.||++..  .+..+++|.+..........+.+..|+.+++.++||||+++++++..++..++||||+
T Consensus         2 ~~~~ig~G~~~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~   81 (327)
T cd08227           2 LLTVIGRGFEDLMTVNLARYKPTGEYVTVRRINLEACTNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVVTSFM   81 (327)
T ss_pred             hhhhccccccceEEEEEEeecccCcEEEEEEechhhccHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEECCEEEEEEecc
Confidence            45789999  6788999887  3466777888665444444566778999999999999999999999999999999999


Q ss_pred             CCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        182 AWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       182 ~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ++|+|.+++.......+++..++.++.|++.||+|||+.+  |+||||||+|||++
T Consensus        82 ~~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~--iiH~dlkp~Nil~~  135 (327)
T cd08227          82 AYGSAKDLICTHFMDGMSELAIAYILQGVLKALDYIHHMG--YVHRSVKASHILIS  135 (327)
T ss_pred             CCCcHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCC--EecCCCChhhEEEe
Confidence            9999999997644346899999999999999999999999  99999999999986

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=99.93  E-value=1.2e-25  Score=181.10  Aligned_cols=131  Identities=13%  Similarity=0.151  Sum_probs=114.7

Q ss_pred             CCcccccccCCCCCCceeeccC--CCceeeeeeeeccC-CchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEe
Q psy12580        103 DLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNC-TPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQ  179 (239)
Q Consensus       103 ~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e  179 (239)
                      +|+..+.||+|+||.||++...  +..+++|++..... .......+..|..++..++||+|+++++.+...+.+++|||
T Consensus         2 ~f~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~~~lv~E   81 (360)
T cd05627           2 DFESLKVIGRGAFGEVRLVQKKDTGHIYAMKILRKADMLEKEQVAHIRAERDILVEADGAWVVKMFYSFQDKRNLYLIME   81 (360)
T ss_pred             CceEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEEe
Confidence            5778899999999999999873  56677788864322 23334567889999999999999999999999999999999


Q ss_pred             eCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       180 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |+++|+|.+++....  .+++..+..++.|++.||+|||+.|  |+||||||+|||++
T Consensus        82 ~~~gg~L~~~l~~~~--~l~~~~~~~~~~qi~~~L~~lH~~g--ivHrDLkp~NIli~  135 (360)
T cd05627          82 FLPGGDMMTLLMKKD--TLSEEATQFYIAETVLAIDAIHQLG--FIHRDIKPDNLLLD  135 (360)
T ss_pred             CCCCccHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCC--eEccCCCHHHEEEC
Confidence            999999999998765  6899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=99.93  E-value=6.3e-26  Score=182.07  Aligned_cols=131  Identities=17%  Similarity=0.229  Sum_probs=116.4

Q ss_pred             CCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCc-hHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEe
Q psy12580        103 DLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTP-RVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQ  179 (239)
Q Consensus       103 ~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~-~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e  179 (239)
                      +|.+.+.||+|+||.||+|...  +..+++|++....... .....+..|..++..++||||+++++++...+..++|||
T Consensus         2 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e   81 (350)
T cd05573           2 DFEVIKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAERDILADADSPWIVKLYYSFQDEEHLYLVME   81 (350)
T ss_pred             CceEEEEEEeCCcEEEEEEEECCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhcCCCCccchhhheecCCeEEEEEc
Confidence            5778899999999999999875  6778888886543222 344678889999999999999999999999999999999


Q ss_pred             eCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       180 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |+++|+|.+++....  .+++..+..++.|++.||+|||+.|  |+||||||+|||++
T Consensus        82 ~~~~~~L~~~l~~~~--~l~~~~~~~i~~qi~~aL~~LH~~g--iiH~Dlkp~NIll~  135 (350)
T cd05573          82 YMPGGDLMNLLIRKD--VFPEETARFYIAELVLALDSVHKLG--FIHRDIKPDNILID  135 (350)
T ss_pred             CCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCC--eeccCCCHHHeEEC
Confidence            999999999998764  6899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=99.93  E-value=1.6e-25  Score=174.87  Aligned_cols=132  Identities=14%  Similarity=0.090  Sum_probs=112.8

Q ss_pred             CcccccccCCCCCCceeecc--CCCceeeeeeeeccCC-chHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEee
Q psy12580        104 LSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCT-PRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQY  180 (239)
Q Consensus       104 ~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~  180 (239)
                      |...+.||+|+||.||++..  .+..+++|.+...... ......+.+|+.++..++|++|+++++++...+..++||||
T Consensus         2 f~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~iv~~~~~~~~~~~~~lv~e~   81 (285)
T cd05631           2 FRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSRFVVSLAYAYETKDALCLVLTI   81 (285)
T ss_pred             ceEEEEEecCCCEEEEEEEEecCCceEEEEEeeHhhhhhhhhHHHHHHHHHHHHhcCCCcEEEEEEEEccCCeEEEEEEe
Confidence            55678899999999999987  4567788877644322 22234577899999999999999999999999999999999


Q ss_pred             CCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        181 MAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       181 ~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +++|+|.+++.......+++..+..++.|++.||+|||+.+  |+||||||+|||++
T Consensus        82 ~~~g~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~--iiH~dikp~Nill~  136 (285)
T cd05631          82 MNGGDLKFHIYNMGNPGFDEQRAIFYAAELCCGLEDLQRER--IVYRDLKPENILLD  136 (285)
T ss_pred             cCCCcHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhCC--EEeCCCCHHHEEEC
Confidence            99999998887644346899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>KOG1094|consensus

Probab=99.93  E-value=5.5e-26  Score=182.36  Aligned_cols=139  Identities=24%  Similarity=0.368  Sum_probs=121.9

Q ss_pred             ccCCCCCCCcccccccCCCCCCceeeccCC-CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCce
Q psy12580         96 HKGISLNDLSLHTKISSGPNGDTWRGRWQK-NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDL  174 (239)
Q Consensus        96 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~-~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~  174 (239)
                      ..++..+.+.+.++||+|.||.|..++..+ ..+|+|.+..... .....+|..|+.+|.+++||||+.++|+|..++++
T Consensus       532 l~EfPRs~L~~~ekiGeGqFGEVhLCeveg~lkVAVK~Lr~~a~-~~~r~~F~kEIkiLsqLkhPNIveLvGVC~~DePi  610 (807)
T KOG1094|consen  532 LVEFPRSRLRFKEKIGEGQFGEVHLCEVEGPLKVAVKILRPDAT-KNARNDFLKEIKILSRLKHPNIVELLGVCVQDDPL  610 (807)
T ss_pred             hhhcchhheehhhhhcCcccceeEEEEecCceEEEEeecCcccc-hhHHHHHHHHHHHHhccCCCCeeEEEeeeecCCch
Confidence            345667778899999999999999999876 7788888866543 44458899999999999999999999999999999


Q ss_pred             EEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        175 VVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       175 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ++++||+++|+|.+++.......+......+|+.||++||+||.+.+  +|||||.+.|+|+|
T Consensus       611 cmI~EYmEnGDLnqFl~aheapt~~t~~~vsi~tqiasgmaYLes~n--fVHrd~a~rNcLv~  671 (807)
T KOG1094|consen  611 CMITEYMENGDLNQFLSAHELPTAETAPGVSICTQIASGMAYLESLN--FVHRDLATRNCLVD  671 (807)
T ss_pred             HHHHHHHhcCcHHHHHHhccCcccccchhHHHHHHHHHHHHHHHhhc--hhhccccccceeec
Confidence            99999999999999999874323456677889999999999999999  99999999999987

>KOG0588|consensus

Probab=99.93  E-value=6.9e-26  Score=184.05  Aligned_cols=131  Identities=18%  Similarity=0.322  Sum_probs=118.5

Q ss_pred             CCcccccccCCCCCCceeecc--CCCceeeeeeeec-cCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEe
Q psy12580        103 DLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVR-NCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQ  179 (239)
Q Consensus       103 ~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~-~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e  179 (239)
                      -+.+++.+|.|+.|.|-.|..  .|+..|+|++... ...........+|+.+|+-+.||||+++|+++....++|+|.|
T Consensus        13 pwkLgkTLG~Gstg~vrlakh~~TGqlaaiKii~k~~~~s~s~~~~IerEIviMkLi~HpnVl~LydVwe~~~~lylvlE   92 (786)
T KOG0588|consen   13 PWKLGKTLGKGSTGCVRLAKHAETGQLAAIKIIPKRSELSSSQPAGIEREIVIMKLIEHPNVLRLYDVWENKQHLYLVLE   92 (786)
T ss_pred             ceeccccccCCCCceehhhhcccccceeEEEeeccccccccccccchhhhhHHHHHhcCCCeeeeeeeeccCceEEEEEE
Confidence            457888999999999999987  5778888999776 3333344668899999999999999999999999999999999


Q ss_pred             eCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       180 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |+++|-|++|+-+.+  ++++..+.+++.||+.|+.|+|..+  |+|||+||+|+|||
T Consensus        93 yv~gGELFdylv~kG--~l~e~eaa~ff~QIi~gv~yCH~~~--icHRDLKpENlLLd  146 (786)
T KOG0588|consen   93 YVPGGELFDYLVRKG--PLPEREAAHFFRQILDGVSYCHAFN--ICHRDLKPENLLLD  146 (786)
T ss_pred             ecCCchhHHHHHhhC--CCCCHHHHHHHHHHHHHHHHHhhhc--ceeccCCchhhhhh
Confidence            999999999999888  7999999999999999999999999  99999999999997

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=99.93  E-value=1.8e-25  Score=177.86  Aligned_cols=126  Identities=17%  Similarity=0.179  Sum_probs=110.2

Q ss_pred             ccccCCCCCCceeecc--CCCceeeeeeeeccC-CchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEeeCCCC
Q psy12580        108 TKISSGPNGDTWRGRW--QKNDIVAKILAVRNC-TPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWG  184 (239)
Q Consensus       108 ~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~~~g  184 (239)
                      +.||+|+||.||++..  .+..+++|++..... .......+.+|+.+++.+.||||+++++++...+..++||||+++|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~Ey~~~g   80 (328)
T cd05593           1 KLLGKGTFGKVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPFLTSLKYSFQTKDRLCFVMEYVNGG   80 (328)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCEEEEEEeCCCCC
Confidence            3589999999999876  456788888865432 2334467788999999999999999999999999999999999999


Q ss_pred             CHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        185 SLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       185 sL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +|..++....  .+++..+..++.||+.||+|||+.+  |+||||||+|||++
T Consensus        81 ~L~~~l~~~~--~l~~~~~~~~~~qi~~aL~~LH~~~--ivHrDikp~NIll~  129 (328)
T cd05593          81 ELFFHLSRER--VFSEDRTRFYGAEIVSALDYLHSGK--IVYRDLKLENLMLD  129 (328)
T ss_pred             CHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCC--eEecccCHHHeEEC
Confidence            9999987765  6899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=99.93  E-value=1.8e-25  Score=176.67  Aligned_cols=124  Identities=16%  Similarity=0.247  Sum_probs=108.6

Q ss_pred             ccCCCCCCceeeccC--CCceeeeeeeecc-CCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEeeCCCCCH
Q psy12580        110 ISSGPNGDTWRGRWQ--KNDIVAKILAVRN-CTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSL  186 (239)
Q Consensus       110 ig~g~~g~v~~~~~~--~~~~~vk~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~~~gsL  186 (239)
                      ||+|+||.||++...  +..+++|.+.... ........+..|+.++..++||||+++++++...+..++||||+++|+|
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L   80 (312)
T cd05585           1 IGKGSFGKVMQVRKRDTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFIVPLKFSFQSPEKLYLVLAFINGGEL   80 (312)
T ss_pred             CCcCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCcEeceeeEEecCCeEEEEEcCCCCCcH
Confidence            689999999999874  4567778876432 2233446678899999999999999999999999999999999999999


Q ss_pred             HHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        187 YALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       187 ~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .+++....  .+++..+..++.|++.||.|||+.+  |+||||||+|||++
T Consensus        81 ~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~--i~HrDlkp~Nili~  127 (312)
T cd05585          81 FHHLQREG--RFDLSRARFYTAELLCALENLHKFN--VIYRDLKPENILLD  127 (312)
T ss_pred             HHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCC--eEeCCCCHHHeEEC
Confidence            99998765  6899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=99.93  E-value=1.5e-25  Score=177.63  Aligned_cols=126  Identities=17%  Similarity=0.210  Sum_probs=110.0

Q ss_pred             ccccCCCCCCceeecc-----CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEeeCC
Q psy12580        108 TKISSGPNGDTWRGRW-----QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMA  182 (239)
Q Consensus       108 ~~ig~g~~g~v~~~~~-----~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~~  182 (239)
                      +.||+|+||.||++..     .+..+++|++............+..|+.++.+++||||+++++++..++..++||||++
T Consensus         2 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~   81 (318)
T cd05582           2 KVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLKVRDRVRTKMERDILAEVNHPFIVKLHYAFQTEGKLYLILDFLR   81 (318)
T ss_pred             ceeeeCCCEEEEEEEEeccCCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhCCCCCcccEEEEEEcCCEEEEEEcCCC
Confidence            4689999999998764     35677888886544333334567789999999999999999999999999999999999


Q ss_pred             CCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        183 WGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       183 ~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +|+|.+++....  .+++..+..++.|+++||.|||+.+  |+||||||+|||++
T Consensus        82 ~~~L~~~l~~~~--~l~~~~~~~~~~qi~~~l~~lH~~~--i~H~dlkp~Nil~~  132 (318)
T cd05582          82 GGDLFTRLSKEV--MFTEEDVKFYLAELALALDHLHSLG--IIYRDLKPENILLD  132 (318)
T ss_pred             CCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCC--EecCCCCHHHeEEC
Confidence            999999997765  6899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=99.93  E-value=4.9e-25  Score=169.42  Aligned_cols=134  Identities=30%  Similarity=0.494  Sum_probs=120.5

Q ss_pred             CCCCCCcccccccCCCCCCceeeccCCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEE
Q psy12580         99 ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVIS  178 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~  178 (239)
                      +...++++.+.+|+|++|.||++...++.+++|.+.....   ..+.+.+|+.+++.++|+||+++++++...+..++||
T Consensus         3 ~~~~~~~~~~~ig~g~~g~v~~~~~~~~~v~iK~~~~~~~---~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~   79 (256)
T cd05039           3 INSKELKLGATIGKGEFGDVMLGDYRGQKVAVKCLKDDST---AAQAFLAEASVMTTLRHPNLVQLLGVVLQGNPLYIVT   79 (256)
T ss_pred             cChhhccceeeeecCCCceEEEEEecCcEEEEEEeccchh---HHHHHHHHHHHHHhcCCcceeeeEEEEcCCCCeEEEE
Confidence            4567888999999999999999999988899888864422   4567889999999999999999999999888999999


Q ss_pred             eeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        179 QYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       179 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||+++++|.+++.......+++..+..++.|++.||.|||+.+  ++||||||+||+++
T Consensus        80 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~--i~H~di~p~Nili~  136 (256)
T cd05039          80 EYMAKGSLVDYLRSRGRAVITLAQQLGFALDVCEGMEYLEEKN--FVHRDLAARNVLVS  136 (256)
T ss_pred             EecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC--ccchhcccceEEEe
Confidence            9999999999998765446899999999999999999999999  99999999999986

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=99.93  E-value=1.4e-25  Score=181.05  Aligned_cols=135  Identities=16%  Similarity=0.162  Sum_probs=115.7

Q ss_pred             CCCCCCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCC-chHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCce
Q psy12580         98 GISLNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCT-PRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDL  174 (239)
Q Consensus        98 ~~~~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~  174 (239)
                      .....+|.+.+.||+|+||.||++...  +..+++|.+...... ......+..|+.+++.++||||+++++++..++..
T Consensus        39 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~h~~iv~~~~~~~~~~~~  118 (370)
T cd05596          39 RMKAEDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAHANSEWIVQLHYAFQDDKYL  118 (370)
T ss_pred             CCCHHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEE
Confidence            345678889999999999999999873  566777888643221 22334577899999999999999999999999999


Q ss_pred             EEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        175 VVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       175 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ++||||+++|+|.+++...   .+++..+..++.|++.||+|||+.+  |+||||||+|||++
T Consensus       119 ~lv~Ey~~gg~L~~~l~~~---~l~~~~~~~~~~qi~~aL~~LH~~~--ivHrDLkp~NILl~  176 (370)
T cd05596         119 YMVMEYMPGGDLVNLMSNY---DIPEKWARFYTAEVVLALDAIHSMG--FIHRDVKPDNMLLD  176 (370)
T ss_pred             EEEEcCCCCCcHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHHCC--eeccCCCHHHEEEc
Confidence            9999999999999998764   3889999999999999999999999  99999999999996

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>KOG1026|consensus

Probab=99.93  E-value=9.7e-26  Score=187.91  Aligned_cols=139  Identities=23%  Similarity=0.374  Sum_probs=120.2

Q ss_pred             ccCCCCCCCcccccccCCCCCCceeeccCC-------CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeee
Q psy12580         96 HKGISLNDLSLHTKISSGPNGDTWRGRWQK-------NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCV  168 (239)
Q Consensus        96 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~-------~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~  168 (239)
                      ...++..++...+.||+|+||+||+|+..+       ..|+||.++.. .+.+..++|.+|+.++..++|||||+++|+|
T Consensus       480 ~~~i~r~~i~~~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~-a~~~~~~dF~REaeLla~l~H~nIVrLlGVC  558 (774)
T KOG1026|consen  480 VLEIPRSDIVFKEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDK-AENQARQDFRREAELLAELQHPNIVRLLGVC  558 (774)
T ss_pred             eeEechhheeehhhhcCchhhhhhhhhccCCCCCccceehhHhhhccc-ccHHHHHHHHHHHHHHHhccCCCeEEEEEEE
Confidence            445677888999999999999999998632       34666777654 3344668899999999999999999999999


Q ss_pred             eCCCceEEEEeeCCCCCHHHHhhcCC--------Ccc----cCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCcccee
Q psy12580        169 NSPPDLVVISQYMAWGSLYALLHEGA--------GIV----VDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV  236 (239)
Q Consensus       169 ~~~~~~~lv~e~~~~gsL~~~l~~~~--------~~~----~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill  236 (239)
                      ..+++++||+|||..|||.++|+...        +..    ++..+.+.|+.|||.||+||-++.  +|||||..+|+||
T Consensus       559 ~~~~P~~MvFEYm~~GDL~eFLra~sP~a~~~~~g~~~~~~L~~~q~L~iA~QIAaGM~YLs~~~--FVHRDLATRNCLV  636 (774)
T KOG1026|consen  559 REGDPLCMVFEYMDHGDLHEFLRARSPKADKLASGQDTPPPLSTSQFLHIATQIAAGMEYLSSHH--FVHRDLATRNCLV  636 (774)
T ss_pred             ccCCeeEEEEEecccccHHHHHHhhCCccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCc--ccccchhhhhcee
Confidence            99999999999999999999998532        223    889999999999999999999998  9999999999998


Q ss_pred             e
Q psy12580        237 Y  237 (239)
Q Consensus       237 ~  237 (239)
                      .
T Consensus       637 g  637 (774)
T KOG1026|consen  637 G  637 (774)
T ss_pred             c
Confidence            5

>KOG0584|consensus

Probab=99.93  E-value=7.1e-26  Score=182.92  Aligned_cols=132  Identities=15%  Similarity=0.281  Sum_probs=111.7

Q ss_pred             CcccccccCCCCCCceeeccCC--Cceeeeeeeec--cCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCC--ceEEE
Q psy12580        104 LSLHTKISSGPNGDTWRGRWQK--NDIVAKILAVR--NCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP--DLVVI  177 (239)
Q Consensus       104 ~~~~~~ig~g~~g~v~~~~~~~--~~~~vk~~~~~--~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~--~~~lv  177 (239)
                      ..+..+||+|+|-+||+|....  -+|+--.++..  ...+...++|..|+.+|+.|+||||+++|.++.+..  .+-+|
T Consensus        42 ~k~~evLGrGafKtVYka~De~~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lLKsL~H~NIirfy~SW~d~~n~~in~i  121 (632)
T KOG0584|consen   42 LKFDEVLGRGAFKTVYKAFDEEEGIEVAWNQVKIRDVTQSPEELERLYSEVHLLKSLKHPNIIRFYDSWVDTDNKTINFI  121 (632)
T ss_pred             eehhhhcccccceeeeeccccccchhhHHHHHhHHHhhcChHHHHHHHHHHHHHccCCCCceeeeeeheecCCCceeeee
Confidence            3566789999999999998743  23332222222  233555689999999999999999999999887765  48899


Q ss_pred             EeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        178 SQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       178 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +|.+..|+|..|+++.+  .++...++.|++||++||.|||++.|||||||||.+||||.
T Consensus       122 TEL~TSGtLr~Y~kk~~--~vn~kaik~W~RQILkGL~yLHs~~PPIIHRDLKCDNIFin  179 (632)
T KOG0584|consen  122 TELFTSGTLREYRKKHR--RVNIKAIKSWCRQILKGLVYLHSQDPPIIHRDLKCDNIFVN  179 (632)
T ss_pred             eecccCCcHHHHHHHhc--cCCHHHHHHHHHHHHHHhhhhhcCCCCccccccccceEEEc
Confidence            99999999999999987  68999999999999999999999999999999999999985

>KOG0032|consensus

Probab=99.93  E-value=2.8e-25  Score=177.33  Aligned_cols=132  Identities=17%  Similarity=0.302  Sum_probs=118.1

Q ss_pred             CCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCc-hHHHHHHHHHhHhhhcC-CCceeeeeeeeeCCCceEE
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTP-RVSRDFNEEFPKLRIFS-HPNVLPVIGCVNSPPDLVV  176 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~-~~~~~~~~e~~~l~~l~-h~~iv~l~~~~~~~~~~~l  176 (239)
                      ...|.+.+.+|+|.||.||++..  .+..+++|.+.++.... .......+|+.+|+.+. ||||+++++++.+...+++
T Consensus        34 ~~~Y~l~~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~l~~hpniv~l~~~~e~~~~~~l  113 (382)
T KOG0032|consen   34 KEKYELGRELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRGKEDREDVRREVAILQQLSGHPNIVQLKDAFEDPDSVYL  113 (382)
T ss_pred             cccEEehhhhCCCCceEEEEEEecCCCceeEEEEeehhhccccccHHHHHHHHHHHHhccCCCCEEEEEEEEEcCCeEEE
Confidence            45678889999999999999987  36778889997765432 23467889999999998 9999999999999999999


Q ss_pred             EEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        177 ISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       177 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |||+|.||.|++.+...   .+++..+..++.|++.|+.|||+.|  |+||||||+|+|+.
T Consensus       114 vmEL~~GGeLfd~i~~~---~~sE~da~~~~~~il~av~~lH~~g--vvHrDlKpEN~L~~  169 (382)
T KOG0032|consen  114 VMELCEGGELFDRIVKK---HYSERDAAGIIRQILEAVKYLHSLG--VVHRDLKPENLLLA  169 (382)
T ss_pred             EEEecCCchHHHHHHHc---cCCHHHHHHHHHHHHHHHHHHHhCC--ceeccCCHHHeeec
Confidence            99999999999999886   2899999999999999999999999  99999999999986

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=99.93  E-value=2.2e-25  Score=177.59  Aligned_cols=133  Identities=16%  Similarity=0.134  Sum_probs=114.3

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeecc-CCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEE
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRN-CTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVIS  178 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~  178 (239)
                      ++|++.+.||+|+||.||++..  .+..+++|++.... ......+.+..|..++..++|+||+++++++..++.+++||
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (331)
T cd05597           1 DDFEILKVIGRGAFGEVAVVKMKNTGQVYAMKILNKWEMLKRAETACFREERDVLVNGDRRWITNLHYAFQDENNLYLVM   80 (331)
T ss_pred             CCceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCceEEEEecCCeEEEEE
Confidence            3678889999999999999986  35677888886432 22233456788999999999999999999999999999999


Q ss_pred             eeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        179 QYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       179 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||+++|+|.+++.... ..+++..+..++.||+.||+|||+.+  |+||||||+|||++
T Consensus        81 e~~~g~~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~--ivH~dlkp~Nill~  136 (331)
T cd05597          81 DYYVGGDLLTLLSKFE-DRLPEDMARFYLAEMVLAIDSVHQLG--YVHRDIKPDNVLLD  136 (331)
T ss_pred             ecCCCCcHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhCC--eEECCCCHHHEEEC
Confidence            9999999999997643 25899999999999999999999999  99999999999985

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>KOG4250|consensus

Probab=99.93  E-value=8.4e-26  Score=184.78  Aligned_cols=130  Identities=18%  Similarity=0.301  Sum_probs=111.3

Q ss_pred             cccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCC------ceEE
Q psy12580        105 SLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP------DLVV  176 (239)
Q Consensus       105 ~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~------~~~l  176 (239)
                      ...+.+|+|+||.||+|+.  .|..+|+|...... .....+...+|+.+|++++|||||++++.-.+..      ...+
T Consensus        16 ~~~e~LG~Ga~g~V~rgrnketG~~vAvK~~~~~~-~~r~~e~~~~EieilkKLnh~NIVk~f~iee~~~~~~~~~~~vl   94 (732)
T KOG4250|consen   16 EMDERLGKGAFGNVYRGRNKETGRLVAVKTFNKES-SLRPRERWCREIEILKKLNHPNIVKLFDIEETKFLGLVTRLPVL   94 (732)
T ss_pred             eehhhhcCCccceeeeecccccccchhHHhhhhhc-ccchHHHHHHHHHHHHHcCchhhhhhcccCCccccCcccccceE
Confidence            4557899999999999996  56788889886654 2334566789999999999999999998775443      6789


Q ss_pred             EEeeCCCCCHHHHhhcCCC-cccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        177 ISQYMAWGSLYALLHEGAG-IVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       177 v~e~~~~gsL~~~l~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |||||.+|||+.++++..+ ..+++..++.+..++..||.|||+.|  ||||||||.||++-
T Consensus        95 vmEyC~gGsL~~~L~~PEN~~GLpE~e~l~lL~d~~~al~~LrEn~--IvHRDlKP~NIvl~  154 (732)
T KOG4250|consen   95 VMEYCSGGSLRKVLNSPENAYGLPESEFLDLLSDLVSALRHLRENG--IVHRDLKPGNIVLQ  154 (732)
T ss_pred             EEeecCCCcHHHHhcCcccccCCCHHHHHHHHHHHHHHHHHHHHcC--ceeccCCCCcEEEe
Confidence            9999999999999987432 46999999999999999999999999  99999999999974

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=99.93  E-value=3e-25  Score=176.81  Aligned_cols=133  Identities=16%  Similarity=0.131  Sum_probs=113.7

Q ss_pred             CCCcccccccCCCCCCceeeccC--CCceeeeeeeecc-CCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEE
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRN-CTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVIS  178 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~  178 (239)
                      ++|.+.+.||+|+||.||++...  +..+++|++.... ........+..|..++..+.|++|+++++++...+..++||
T Consensus         1 d~y~i~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~l~~~~~~~~~~~lv~   80 (331)
T cd05624           1 DDFEIIKVIGRGAFGEVAVVKMKHTERIYAMKILNKWEMLKRAETACFREERNVLVNGDCQWITTLHYAFQDENYLYLVM   80 (331)
T ss_pred             CCceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHHHhhHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEE
Confidence            36788899999999999999873  4567778875432 22223455778889999999999999999999999999999


Q ss_pred             eeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        179 QYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       179 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||+++|+|.+++.... ..+++..+..++.|++.||+|||+.+  |+||||||+|||++
T Consensus        81 Ey~~gg~L~~~l~~~~-~~l~~~~~~~~~~qi~~~L~~lH~~~--iiHrDlkp~Nill~  136 (331)
T cd05624          81 DYYVGGDLLTLLSKFE-DRLPEDMARFYIAEMVLAIHSIHQLH--YVHRDIKPDNVLLD  136 (331)
T ss_pred             eCCCCCcHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCC--eeeccCchHHEEEc
Confidence            9999999999998743 25899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.93  E-value=5.7e-25  Score=170.76  Aligned_cols=124  Identities=17%  Similarity=0.304  Sum_probs=103.6

Q ss_pred             cccCCCCCCceeeccCC--------------------------CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCcee
Q psy12580        109 KISSGPNGDTWRGRWQK--------------------------NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVL  162 (239)
Q Consensus       109 ~ig~g~~g~v~~~~~~~--------------------------~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv  162 (239)
                      .||+|+||.||+|.+..                          ..+++|++...  .......+..|+.+++.++||||+
T Consensus         2 ~lG~G~~~~vy~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~--~~~~~~~~~~~~~~~~~l~h~niv   79 (274)
T cd05076           2 HLGQGTRTNIYDGRLRVEGGGEPEEDEMEDEDPLVEGNNNGRELRVVLKVLDPS--HRDIALAFFETASLMSQVSHIHLA   79 (274)
T ss_pred             CcCcccccceecceeEeccCCCCcccccccccccccccCCCeeeeEEEEecChH--HHHHHHHHHHHHHHHhcCCCCCee
Confidence            58999999999987421                          12445555332  122345688889999999999999


Q ss_pred             eeeeeeeCCCceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        163 PVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       163 ~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ++++++......++||||+++|+|..++....+ .+++..+..++.|+++||+|||+.+  |+||||||+|||++
T Consensus        80 ~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~-~~~~~~~~~i~~qi~~~l~~lH~~~--iiH~dlkp~Nill~  151 (274)
T cd05076          80 FVHGVCVRGSENIMVEEFVEHGPLDVCLRKEKG-RVPVAWKITVAQQLASALSYLEDKN--LVHGNVCAKNILLA  151 (274)
T ss_pred             eEEEEEEeCCceEEEEecCCCCcHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHcCC--ccCCCCCcccEEEe
Confidence            999999999999999999999999999876432 5899999999999999999999999  99999999999985

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=99.93  E-value=5.3e-25  Score=178.90  Aligned_cols=139  Identities=22%  Similarity=0.345  Sum_probs=116.4

Q ss_pred             ccCCCCCCCcccccccCCCCCCceeeccCC-------CceeeeeeeeccCCchHHHHHHHHHhHhhhcC-CCceeeeeee
Q psy12580         96 HKGISLNDLSLHTKISSGPNGDTWRGRWQK-------NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFS-HPNVLPVIGC  167 (239)
Q Consensus        96 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~-------~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~-h~~iv~l~~~  167 (239)
                      .+.++...|.+.+.||+|+||.||+|.+.+       ..+++|++... ......+.+.+|+.++..+. ||||++++++
T Consensus        31 ~~~~~~~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~-~~~~~~~~~~~Ei~~l~~l~~HpnIv~l~~~  109 (400)
T cd05105          31 RWEFPRDGLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPT-ARSSEKQALMSELKIMTHLGPHLNIVNLLGA  109 (400)
T ss_pred             ceeccccceehhheecCCCCceEEEEEEcccCCCCCceEEEEEecCCC-CChHHHHHHHHHHHHHHhcCCCCCeeeEEEE
Confidence            455667889999999999999999997522       24777877543 22334467899999999995 9999999999


Q ss_pred             eeCCCceEEEEeeCCCCCHHHHhhcCC-----------------------------------------------------
Q psy12580        168 VNSPPDLVVISQYMAWGSLYALLHEGA-----------------------------------------------------  194 (239)
Q Consensus       168 ~~~~~~~~lv~e~~~~gsL~~~l~~~~-----------------------------------------------------  194 (239)
                      +...+..+||||||++|+|.+++....                                                     
T Consensus       110 ~~~~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (400)
T cd05105         110 CTKSGPIYIITEYCFYGDLVNYLHKNRDNFLSRHPEKPKKDLDIFGINPADESTRSYVILSFENKGDYMDMKQADTTQYV  189 (400)
T ss_pred             EccCCceEEEEEecCCCcHHHHHHHhhhhhhccccccccccccccCCCcccccccchhhhhhcccccccccccccccccc
Confidence            999999999999999999999986421                                                     


Q ss_pred             -----------------------------------------CcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCcc
Q psy12580        195 -----------------------------------------GIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRH  233 (239)
Q Consensus       195 -----------------------------------------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~N  233 (239)
                                                               ...+++..+..++.|+++||+|||+.+  |+||||||+|
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~--ivH~dikp~N  267 (400)
T cd05105         190 PMLEIKEASKYSDIQRSNYDRPASYKGSNDSEVKNLLSDDGSEGLTTLDLLSFTYQVARGMEFLASKN--CVHRDLAARN  267 (400)
T ss_pred             hhhhhhhhhhhhhcccCcccccccccCcchhhHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhCC--eeCCCCChHh
Confidence                                                     124778888999999999999999999  9999999999


Q ss_pred             ceee
Q psy12580        234 VMVY  237 (239)
Q Consensus       234 ill~  237 (239)
                      ||++
T Consensus       268 ill~  271 (400)
T cd05105         268 VLLA  271 (400)
T ss_pred             EEEe
Confidence            9986

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=99.93  E-value=2.4e-25  Score=179.72  Aligned_cols=136  Identities=18%  Similarity=0.194  Sum_probs=116.1

Q ss_pred             cCCCCCCCcccccccCCCCCCceeeccC--CCceeeeeeeeccC-CchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCc
Q psy12580         97 KGISLNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNC-TPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPD  173 (239)
Q Consensus        97 ~~~~~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~  173 (239)
                      ......+|.+.+.||+|+||.||++...  +..+++|++..... .......+..|..+++.++||||+++++++..++.
T Consensus        38 ~~~~~~~y~i~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~~  117 (371)
T cd05622          38 LRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDRY  117 (371)
T ss_pred             cCcchhhcEEEEEEeecCCeEEEEEEECCCCcEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCE
Confidence            3455688999999999999999999874  45667787754322 22233557789999999999999999999999999


Q ss_pred             eEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        174 LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .++||||+++|+|.+++....   +++..+..++.|++.||+|||+.+  |+||||||+|||++
T Consensus       118 ~~lv~Ey~~gg~L~~~~~~~~---~~~~~~~~~~~qi~~aL~~LH~~~--ivHrDLkp~NIll~  176 (371)
T cd05622         118 LYMVMEYMPGGDLVNLMSNYD---VPEKWARFYTAEVVLALDAIHSMG--FIHRDVKPDNMLLD  176 (371)
T ss_pred             EEEEEcCCCCCcHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHHCC--EEeCCCCHHHEEEC
Confidence            999999999999999997643   889999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=99.93  E-value=1.9e-25  Score=172.10  Aligned_cols=130  Identities=25%  Similarity=0.433  Sum_probs=110.5

Q ss_pred             cccccccCCCCCCceeeccC------CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEE
Q psy12580        105 SLHTKISSGPNGDTWRGRWQ------KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVIS  178 (239)
Q Consensus       105 ~~~~~ig~g~~g~v~~~~~~------~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~  178 (239)
                      +..+.||.|+||.||+|.+.      +..+++|.+.. .......+.+.+|+..+++++||||++++|++...+..++|+
T Consensus         2 ~~~~~ig~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~-~~~~~~~~~~~~e~~~l~~l~h~ni~~~~g~~~~~~~~~lv~   80 (259)
T PF07714_consen    2 KLIKQIGEGSFGKVYRAEWKQKDNDKNQPVAVKILKP-SSSEEEEEEFLNEIQILRKLRHPNIVKLYGFCIENEPLFLVM   80 (259)
T ss_dssp             EEEEEEEEESSEEEEEEEEESTTTSSEEEEEEEEEST-TSSHHHHHHHHHHHHHHHTHSBTTBE-EEEEEESSSSEEEEE
T ss_pred             EEeeEEccCCCcEEEEEEEEcccCCCCEEEEEEEecc-ccccccceeeeecccccccccccccccccccccccccccccc
Confidence            35678999999999999987      45677777743 233444688999999999999999999999999888899999


Q ss_pred             eeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        179 QYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       179 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||+++|+|.+++.......+++..+..++.||++||.|||+.+  ++|+||+|+|||++
T Consensus        81 e~~~~g~L~~~L~~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~~--iiH~~l~~~nill~  137 (259)
T PF07714_consen   81 EYCPGGSLDDYLKSKNKEPLSEQQRLSIAIQIAEALSYLHSNN--IIHGNLSPSNILLD  137 (259)
T ss_dssp             E--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTT--EEEST-SGGGEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccc--cccccccccccccc
Confidence            9999999999999873347999999999999999999999999  99999999999997

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=99.93  E-value=2.8e-25  Score=176.90  Aligned_cols=132  Identities=16%  Similarity=0.202  Sum_probs=115.3

Q ss_pred             CCcccccccCCCCCCceeecc--CCCceeeeeeeeccC-CchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEe
Q psy12580        103 DLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNC-TPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQ  179 (239)
Q Consensus       103 ~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e  179 (239)
                      +|.+.+.||+|+||.||++..  .+..+++|++..... .......+..|..++..++||||+++++++...+..++|||
T Consensus         2 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~~~~i~~~~~~~~~~~~~~lv~e   81 (330)
T cd05601           2 DFDVKSLVGRGHFGEVQVVREKATGDIYAMKVMKKSVLLAQETVSFFEEERDILSISNSPWIPQLQYAFQDKDNLYLVME   81 (330)
T ss_pred             CceEEEEEEeccCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceeeEEecCCeEEEEEC
Confidence            578889999999999999986  456778888865433 23344667889999999999999999999999999999999


Q ss_pred             eCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       180 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |+++|+|.+++....+ .+++..+..++.|++.||.|||+.+  |+||||||+|||++
T Consensus        82 ~~~~~~L~~~l~~~~~-~l~~~~~~~~~~qi~~aL~~lH~~~--i~H~Dlkp~NIll~  136 (330)
T cd05601          82 YQPGGDLLSLLNRYED-QFDEDMAQFYLAELVLAIHSVHQMG--YVHRDIKPENVLID  136 (330)
T ss_pred             CCCCCCHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHCC--eEcccCchHheEEC
Confidence            9999999999987632 6899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>PHA02988 hypothetical protein; Provisional

Probab=99.92  E-value=5.7e-25  Score=171.48  Aligned_cols=140  Identities=20%  Similarity=0.307  Sum_probs=117.4

Q ss_pred             ccccCCCCCCCccc--ccccCCCCCCceeeccCCCceeeeeeeeccCCc-hHHHHHHHHHhHhhhcCCCceeeeeeeeeC
Q psy12580         94 SRHKGISLNDLSLH--TKISSGPNGDTWRGRWQKNDIVAKILAVRNCTP-RVSRDFNEEFPKLRIFSHPNVLPVIGCVNS  170 (239)
Q Consensus        94 ~~~~~~~~~~~~~~--~~ig~g~~g~v~~~~~~~~~~~vk~~~~~~~~~-~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~  170 (239)
                      .....++..+++..  ..+++|+++.||+|.+++..+++|.+....... ...+.+.+|+.+|.+++||||+++++++..
T Consensus        10 ~~~~~i~~~~i~~~~~~~i~~g~~~~v~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~   89 (283)
T PHA02988         10 NDIKCIESDDIDKYTSVLIKENDQNSIYKGIFNNKEVIIRTFKKFHKGHKVLIDITENEIKNLRRIDSNNILKIYGFIID   89 (283)
T ss_pred             CcceecCHHHcCCCCCeEEeeCCceEEEEEEECCEEEEEEeccccccccHHHHHHHHHHHHHHHhcCCCCEEEEeeeEEe
Confidence            33444555556555  678999999999999999999999886543322 224678899999999999999999999866


Q ss_pred             ----CCceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhc-CCCCcccCCCCCccceee
Q psy12580        171 ----PPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS-LERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       171 ----~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~-~~~~ivHrdikp~Nill~  237 (239)
                          ....++||||+++|+|.+++....  .+++.....++.|++.||.|||+ .+  ++||||||+|||++
T Consensus        90 ~~~~~~~~~lv~Ey~~~g~L~~~l~~~~--~~~~~~~~~i~~~i~~~l~~lH~~~~--~~Hrdlkp~nill~  157 (283)
T PHA02988         90 IVDDLPRLSLILEYCTRGYLREVLDKEK--DLSFKTKLDMAIDCCKGLYNLYKYTN--KPYKNLTSVSFLVT  157 (283)
T ss_pred             cccCCCceEEEEEeCCCCcHHHHHhhCC--CCChhHHHHHHHHHHHHHHHHHhcCC--CCCCcCChhhEEEC
Confidence                347899999999999999998765  68999999999999999999998 47  88999999999987

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=99.92  E-value=6.6e-25  Score=168.72  Aligned_cols=132  Identities=23%  Similarity=0.413  Sum_probs=113.9

Q ss_pred             CCCCCcccccccCCCCCCceeeccCC-CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEE
Q psy12580        100 SLNDLSLHTKISSGPNGDTWRGRWQK-NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVIS  178 (239)
Q Consensus       100 ~~~~~~~~~~ig~g~~g~v~~~~~~~-~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~  178 (239)
                      +.++|.+.+.||+|+||.||++.+++ ..+++|.+.....   ....+..|+.+++.++||||+++++++...+..++||
T Consensus         2 ~~~~~~~~~~lg~G~~~~vy~~~~~~~~~~a~K~~~~~~~---~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~iv~   78 (256)
T cd05114           2 NPSELTFMKELGSGQFGVVHLGKWRAQIKVAIKAINEGAM---SEEDFIEEAKVMMKLSHPKLVQLYGVCTQQKPLYIVT   78 (256)
T ss_pred             CHHHcEEeeEecCCcCceEEEEEeccCceEEEEecccCCc---cHHHHHHHHHHHHHCCCCCceeEEEEEccCCCEEEEE
Confidence            34667888999999999999998865 4566676643322   2356888999999999999999999999999999999


Q ss_pred             eeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        179 QYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       179 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||+++|+|.+++....+ .+++..+..++.|++.||+|||+.+  |+||||||+||+++
T Consensus        79 e~~~~~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~l~~lH~~~--i~H~dl~p~ni~i~  134 (256)
T cd05114          79 EFMENGCLLNYLRQRQG-KLSKDMLLSMCQDVCEGMEYLERNS--FIHRDLAARNCLVS  134 (256)
T ss_pred             EcCCCCcHHHHHHhCcc-CCCHHHHHHHHHHHHHHHHHHHHCC--ccccccCcceEEEc
Confidence            99999999999976442 5899999999999999999999999  99999999999986

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=99.92  E-value=4.5e-25  Score=172.53  Aligned_cols=132  Identities=16%  Similarity=0.291  Sum_probs=112.5

Q ss_pred             CCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEE
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVIS  178 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~  178 (239)
                      .++|...+.||+|+||.||+|..  .+..+++|.+..... ......+.+|+.+++.++||||+++++++...+..++||
T Consensus         4 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~   82 (288)
T cd07871           4 LETYVKLDKLGEGTYATVFKGRSKLTENLVALKEIRLEHE-EGAPCTAIREVSLLKNLKHANIVTLHDIIHTERCLTLVF   82 (288)
T ss_pred             cccceEeeEEecCCCEEEEEEEECCCCCEEEEEEeccccc-CCcchhHHHHHHHHHhCCCCCEeeEEEEEcCCCeEEEEE
Confidence            46788899999999999999976  346677787754322 222345778999999999999999999999888999999


Q ss_pred             eeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        179 QYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       179 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||+++ +|.+++.... ..+++..+..++.||+.||+|||+.+  |+||||||+|||++
T Consensus        83 e~~~~-~l~~~l~~~~-~~~~~~~~~~~~~qi~~aL~~LH~~~--ivH~dlkp~Nil~~  137 (288)
T cd07871          83 EYLDS-DLKQYLDNCG-NLMSMHNVKIFMFQLLRGLSYCHKRK--ILHRDLKPQNLLIN  137 (288)
T ss_pred             eCCCc-CHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHhCC--cccCCCCHHHEEEC
Confidence            99975 9999987654 25789999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=99.92  E-value=3e-25  Score=179.39  Aligned_cols=139  Identities=22%  Similarity=0.363  Sum_probs=115.9

Q ss_pred             ccCCCCCCCcccccccCCCCCCceeeccC-------CCceeeeeeeeccCCchHHHHHHHHHhHhhhc-CCCceeeeeee
Q psy12580         96 HKGISLNDLSLHTKISSGPNGDTWRGRWQ-------KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIF-SHPNVLPVIGC  167 (239)
Q Consensus        96 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~~-------~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~l~~~  167 (239)
                      .+....++|++.+.||+|+||.||++.+.       +..+++|.+..... ......+.+|+.+++.+ +|+||++++++
T Consensus        32 ~~~~~~~~~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~E~~il~~l~~h~nIv~~~~~  110 (374)
T cd05106          32 KWEFPRDNLQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAH-TDEREALMSELKILSHLGQHKNIVNLLGA  110 (374)
T ss_pred             cccccHHHceehheecCCCcccEEEEEEecCCcccccceeEEEeccCCCC-HHHHHHHHHHHHHHHhhccCCceeeEeeE
Confidence            34566678999999999999999998752       13577777754332 33345688999999999 89999999999


Q ss_pred             eeCCCceEEEEeeCCCCCHHHHhhcCC-----------------------------------------------------
Q psy12580        168 VNSPPDLVVISQYMAWGSLYALLHEGA-----------------------------------------------------  194 (239)
Q Consensus       168 ~~~~~~~~lv~e~~~~gsL~~~l~~~~-----------------------------------------------------  194 (239)
                      +...+..++||||+++|+|.+++....                                                     
T Consensus       111 ~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (374)
T cd05106         111 CTHGGPVLVITEYCCYGDLLNFLRKKAETFLNFVMALPEISETSSDYKNITLEKKYIRSDSGFSSQGSDTYVEMRPVSSS  190 (374)
T ss_pred             ecCCCCeEEeHhhccCCcHHHHHHhhhhhhccccccccccccccccccccchhcccccccccccccccccccccCCcccc
Confidence            999999999999999999999986421                                                     


Q ss_pred             ---------------CcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        195 ---------------GIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       195 ---------------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                                     ...+++..+.+++.||+.||.|||+.+  |+||||||+|||++
T Consensus       191 ~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~yLH~~g--iiHrDLkp~Nil~~  246 (374)
T cd05106         191 SSQSSDSKDEEDTEDSWPLDLDDLLRFSSQVAQGMDFLASKN--CIHRDVAARNVLLT  246 (374)
T ss_pred             ccccccccchhccCCCCCcCHHHHHHHHHHHHHHHHHHHHCC--EEeccCchheEEEe
Confidence                           124788899999999999999999999  99999999999986

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=99.92  E-value=5.5e-25  Score=174.88  Aligned_cols=126  Identities=17%  Similarity=0.167  Sum_probs=109.0

Q ss_pred             ccccCCCCCCceeecc--CCCceeeeeeeeccC-CchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEeeCCCC
Q psy12580        108 TKISSGPNGDTWRGRW--QKNDIVAKILAVRNC-TPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWG  184 (239)
Q Consensus       108 ~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~~~g  184 (239)
                      +.||+|+||.||++..  .+..+++|++..... .......+..|..++..++||||+++++++...+..++||||+++|
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~~   80 (325)
T cd05594           1 KLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYANGG   80 (325)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCCceEEEEEcCCEEEEEEeCCCCC
Confidence            3589999999999876  456778888865432 2233456778999999999999999999999999999999999999


Q ss_pred             CHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhc-CCCCcccCCCCCccceee
Q psy12580        185 SLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS-LERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       185 sL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~-~~~~ivHrdikp~Nill~  237 (239)
                      +|..++....  .+++..+..++.|++.||.|||+ .+  |+||||||+|||++
T Consensus        81 ~L~~~l~~~~--~l~~~~~~~~~~qi~~aL~~lH~~~~--ivHrDikp~NIll~  130 (325)
T cd05594          81 ELFFHLSRER--VFSEDRARFYGAEIVSALDYLHSEKN--VVYRDLKLENLMLD  130 (325)
T ss_pred             cHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhcCC--EEecCCCCCeEEEC
Confidence            9999987765  68999999999999999999997 78  99999999999986

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=99.92  E-value=7.5e-25  Score=174.61  Aligned_cols=134  Identities=15%  Similarity=0.285  Sum_probs=114.9

Q ss_pred             CCCCCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEE
Q psy12580         99 ISLNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVV  176 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~l  176 (239)
                      +..++|++.+.||+|+||.||++...  +..+++|.+... ........+.+|+.++..++||||+++++++...+..++
T Consensus         2 l~~~~y~~~~~lg~g~~g~V~~~~~~~~~~~~a~k~~~~~-~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l   80 (333)
T cd06650           2 LKDDDFEKISELGAGNGGVVFKVSHKPSGLIMARKLIHLE-IKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISI   80 (333)
T ss_pred             cchhhhheeccccCCCCEEEEEEEECCCCcEEEEEEeecc-cCHHHHHHHHHHHHHHHHCCCCcccceeEEEEECCEEEE
Confidence            44578899999999999999999884  344455665443 233344678899999999999999999999999999999


Q ss_pred             EEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhc-CCCCcccCCCCCccceee
Q psy12580        177 ISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS-LERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       177 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~-~~~~ivHrdikp~Nill~  237 (239)
                      ||||+.+|+|.+++....  .+++..+..++.|++.||.|||+ .+  |+||||||+|||++
T Consensus        81 v~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~l~~~l~~lH~~~~--ivH~dlkp~Nili~  138 (333)
T cd06650          81 CMEHMDGGSLDQVLKKAG--RIPEQILGKVSIAVIKGLTYLREKHK--IMHRDVKPSNILVN  138 (333)
T ss_pred             EEecCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHhcCC--EEecCCChhhEEEc
Confidence            999999999999998765  68999999999999999999997 47  99999999999986

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=99.92  E-value=1e-24  Score=177.14  Aligned_cols=139  Identities=20%  Similarity=0.358  Sum_probs=117.1

Q ss_pred             ccCCCCCCCcccccccCCCCCCceeeccCC-------CceeeeeeeeccCCchHHHHHHHHHhHhhhcC-CCceeeeeee
Q psy12580         96 HKGISLNDLSLHTKISSGPNGDTWRGRWQK-------NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFS-HPNVLPVIGC  167 (239)
Q Consensus        96 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~-------~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~-h~~iv~l~~~  167 (239)
                      .+.+..+++.+.+.||+|+||.||+|.+++       ..+++|++.... .....+.+..|+.++..+. ||||++++++
T Consensus        31 ~~~~~~~~~~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~-~~~~~~~~~~E~~~l~~l~~H~niv~~~~~  109 (401)
T cd05107          31 AWEMPRDNLVLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTA-RSSEKQALMSELKIMSHLGPHLNIVNLLGA  109 (401)
T ss_pred             cceecHHHeehhhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCC-ChhHHHHHHHHHHHHHhcCCCCCeEEEEEE
Confidence            466777888999999999999999998643       357788886432 2333456889999999997 9999999999


Q ss_pred             eeCCCceEEEEeeCCCCCHHHHhhcCCC----------------------------------------------------
Q psy12580        168 VNSPPDLVVISQYMAWGSLYALLHEGAG----------------------------------------------------  195 (239)
Q Consensus       168 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~----------------------------------------------------  195 (239)
                      +...+..++||||+++|+|.++++....                                                    
T Consensus       110 ~~~~~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (401)
T cd05107         110 CTKGGPIYIITEYCRYGDLVDYLHRNKHTFLQYYLDKNRDDGSLISGGSTPLSQRKSHVSLGSESDGGYMDMSKDESADY  189 (401)
T ss_pred             EccCCCcEEEEeccCCCcHHHHHHhccccchhhhcccccccccccccccccccccccchhhhhccCccccccCCccccCc
Confidence            9999999999999999999999975321                                                    


Q ss_pred             --------------------------------------------cccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCC
Q psy12580        196 --------------------------------------------IVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNS  231 (239)
Q Consensus       196 --------------------------------------------~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp  231 (239)
                                                                  ..+++..+..++.|++.||.|||+.+  |+||||||
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~--ivHrdlkp  267 (401)
T cd05107         190 VPMQDMKGTVKYADIESSNYESPYDQYLPSAPERTRRDTLINESPALSYMDLVGFSYQVANGMEFLASKN--CVHRDLAA  267 (401)
T ss_pred             cchhcchhhhhhhhhhccCcCCchhhhhcccCCCcchhhhhcCCCCCCHHHHHHHHHHHHHHHHHHhcCC--cCcccCCc
Confidence                                                        23677788999999999999999999  99999999


Q ss_pred             ccceee
Q psy12580        232 RHVMVY  237 (239)
Q Consensus       232 ~Nill~  237 (239)
                      +|||++
T Consensus       268 ~NiLl~  273 (401)
T cd05107         268 RNVLIC  273 (401)
T ss_pred             ceEEEe
Confidence            999986

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=99.92  E-value=9.6e-25  Score=173.90  Aligned_cols=134  Identities=17%  Similarity=0.285  Sum_probs=115.8

Q ss_pred             CCCCCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEE
Q psy12580         99 ISLNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVV  176 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~l  176 (239)
                      +..++|+..+.||+|+||.||++...  +..+++|.+... ........+.+|+.++++++||||+++++++...+..++
T Consensus         2 l~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~-~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l   80 (331)
T cd06649           2 LKDDDFERISELGAGNGGVVTKVQHKPSGLIMARKLIHLE-IKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISI   80 (331)
T ss_pred             CCcccceEEEeecCCCCEEEEEEEECCCCcEEEEEEeecc-cCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEE
Confidence            34578889999999999999999884  344556666543 233445678999999999999999999999999999999


Q ss_pred             EEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcC-CCCcccCCCCCccceee
Q psy12580        177 ISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSL-ERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       177 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~-~~~ivHrdikp~Nill~  237 (239)
                      ||||+++|+|.+++....  .+++..+..++.|++.||.|||+. +  |+||||||+|||++
T Consensus        81 v~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~i~~~l~~lH~~~~--ivH~dlkp~Nil~~  138 (331)
T cd06649          81 CMEHMDGGSLDQVLKEAK--RIPEEILGKVSIAVLRGLAYLREKHQ--IMHRDVKPSNILVN  138 (331)
T ss_pred             EeecCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHhhcCC--EEcCCCChhhEEEc
Confidence            999999999999998765  689999999999999999999984 6  99999999999986

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>KOG4721|consensus

Probab=99.92  E-value=1.2e-25  Score=180.17  Aligned_cols=131  Identities=23%  Similarity=0.425  Sum_probs=118.3

Q ss_pred             ccccCCCCCCCcccccccCCCCCCceeeccCCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCc
Q psy12580         94 SRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPD  173 (239)
Q Consensus        94 ~~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~  173 (239)
                      ...+++..+.+.-.+=+|+|+-|.||.|++++..|+||.+...         -..++..|++++||||+.|.|+|....-
T Consensus       116 ~e~WeiPFe~IsELeWlGSGaQGAVF~Grl~netVAVKKV~el---------kETdIKHLRkLkH~NII~FkGVCtqsPc  186 (904)
T KOG4721|consen  116 EELWEIPFEEISELEWLGSGAQGAVFLGRLHNETVAVKKVREL---------KETDIKHLRKLKHPNIITFKGVCTQSPC  186 (904)
T ss_pred             hhhccCCHHHhhhhhhhccCcccceeeeeccCceehhHHHhhh---------hhhhHHHHHhccCcceeeEeeeecCCce
Confidence            3467788787778888999999999999999999999777432         1246888999999999999999999999


Q ss_pred             eEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        174 LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +|||||||..|-|+.+|+...  .+.......|..+|+.||.|||.+.  |||||||+-||||+
T Consensus       187 yCIiMEfCa~GqL~~VLka~~--~itp~llv~Wsk~IA~GM~YLH~hK--IIHRDLKSPNiLIs  246 (904)
T KOG4721|consen  187 YCIIMEFCAQGQLYEVLKAGR--PITPSLLVDWSKGIAGGMNYLHLHK--IIHRDLKSPNILIS  246 (904)
T ss_pred             eEEeeeccccccHHHHHhccC--ccCHHHHHHHHHHhhhhhHHHHHhh--HhhhccCCCceEee
Confidence            999999999999999999877  7899999999999999999999999  99999999999996

>KOG0578|consensus

Probab=99.92  E-value=1.6e-25  Score=179.01  Aligned_cols=130  Identities=21%  Similarity=0.355  Sum_probs=115.7

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEe
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQ  179 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e  179 (239)
                      ..|....+||+|+.|.||.+..  .+..|++|.+..+....  .+-+.+|+.+|+..+|+|||.++..|...+.+|+|||
T Consensus       273 ~~y~~~~kigqgaSG~vy~A~~~~~~~~VaiK~m~l~~Q~~--keLilnEi~Vm~~~~H~NiVnfl~Sylv~deLWVVME  350 (550)
T KOG0578|consen  273 SKYTDFKKIGQGATGGVYVARKISTKQEVAIKRMDLRKQPK--KELLLNEILVMRDLHHPNIVNFLDSYLVGDELWVVME  350 (550)
T ss_pred             hhhcchhhhccccccceeeeeeccCCceEEEEEEEeccCCc--hhhhHHHHHHHHhccchHHHHHHHHhcccceeEEEEe
Confidence            5566778899999999999976  45677888887765444  2557899999999999999999999988899999999


Q ss_pred             eCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceeec
Q psy12580        180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVYI  238 (239)
Q Consensus       180 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~~  238 (239)
                      |++||+|.+.+....   +++.++..|++++++||+|||..|  |+|||||.+|||++.
T Consensus       351 ym~ggsLTDvVt~~~---~~E~qIA~Icre~l~aL~fLH~~g--IiHrDIKSDnILL~~  404 (550)
T KOG0578|consen  351 YMEGGSLTDVVTKTR---MTEGQIAAICREILQGLKFLHARG--IIHRDIKSDNILLTM  404 (550)
T ss_pred             ecCCCchhhhhhccc---ccHHHHHHHHHHHHHHHHHHHhcc--eeeeccccceeEecc
Confidence            999999999998765   999999999999999999999999  999999999999863

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=99.92  E-value=7.4e-25  Score=168.87  Aligned_cols=135  Identities=24%  Similarity=0.433  Sum_probs=117.2

Q ss_pred             CCCCCCCcccccccCCCCCCceeeccCC-CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEE
Q psy12580         98 GISLNDLSLHTKISSGPNGDTWRGRWQK-NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVV  176 (239)
Q Consensus        98 ~~~~~~~~~~~~ig~g~~g~v~~~~~~~-~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~l  176 (239)
                      .+..++|++.+.+|+|++|.||+|...+ ..+++|.+...   ....+.+.+|+.+++.++|+||+++++.+...+..++
T Consensus         2 ~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~v~iK~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   78 (261)
T cd05072           2 EIPRESIKLVKKLGAGQFGEVWMGYYNNSTKVAVKTLKPG---TMSVQAFLEEANLMKTLQHDKLVRLYAVVTKEEPIYI   78 (261)
T ss_pred             cCchHHeEEeeecCCcCCceEEEEEecCCceEEEEEccCC---chhHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCcEE
Confidence            4566788999999999999999998754 45666766432   2234678899999999999999999999999899999


Q ss_pred             EEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        177 ISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       177 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ++||+++|+|.+++....+..+++..+..++.|++.||.|||+.+  ++||||||+||+++
T Consensus        79 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~LH~~~--i~H~dl~p~nili~  137 (261)
T cd05072          79 ITEYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERKN--YIHRDLRAANVLVS  137 (261)
T ss_pred             EEecCCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCC--eeccccchhhEEec
Confidence            999999999999998755456899999999999999999999999  99999999999986

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=99.92  E-value=9.2e-25  Score=167.95  Aligned_cols=132  Identities=24%  Similarity=0.425  Sum_probs=114.8

Q ss_pred             CCCCCcccccccCCCCCCceeeccCCC-ceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEE
Q psy12580        100 SLNDLSLHTKISSGPNGDTWRGRWQKN-DIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVIS  178 (239)
Q Consensus       100 ~~~~~~~~~~ig~g~~g~v~~~~~~~~-~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~  178 (239)
                      +..+|.+.+.+|+|+||.||.+.+.+. .+++|.+.....   ....+.+|+.++..++||||+++++++...+..+++|
T Consensus         2 ~~~~~~~~~~lg~G~~~~vy~~~~~~~~~~aik~~~~~~~---~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   78 (256)
T cd05113           2 DPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM---SEDEFIEEAKVMMKLSHEKLVQLYGVCTKQRPIYIVT   78 (256)
T ss_pred             ChHHeEEeeEecCcccceEEEEEecCCCcEEEEEcCCCcc---cHHHHHHHHHHHhcCCCCCeeeEEEEEccCCCcEEEE
Confidence            346788889999999999999988654 477787653322   2356889999999999999999999999888999999


Q ss_pred             eeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        179 QYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       179 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||+.+|+|.+++..... .+++..++.++.|++.||.|||+.+  ++|+||||+||+++
T Consensus        79 e~~~~~~l~~~i~~~~~-~~~~~~~~~~~~~i~~~l~~lH~~~--i~H~dl~p~nili~  134 (256)
T cd05113          79 EYMSNGCLLNYLREHGK-RFQPSQLLEMCKDVCEGMAYLESKQ--FIHRDLAARNCLVD  134 (256)
T ss_pred             EcCCCCcHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHhCC--eeccccCcceEEEc
Confidence            99999999999987543 5899999999999999999999999  99999999999986

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>KOG0586|consensus

Probab=99.92  E-value=3.5e-25  Score=178.57  Aligned_cols=134  Identities=16%  Similarity=0.296  Sum_probs=123.0

Q ss_pred             CCCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEE
Q psy12580        100 SLNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVI  177 (239)
Q Consensus       100 ~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv  177 (239)
                      ....|.+...||+|.|+.|..+..  .+.+|++|.+.+........+.+.+|+.+|..++|||||+++.+..+...+|+|
T Consensus        54 ~vg~y~i~~tig~g~f~~V~La~~~~t~~~VaiK~idkt~ln~~~~~k~~rev~imk~l~HPnIvkl~~v~~t~~~lylV  133 (596)
T KOG0586|consen   54 SVGLYVIIKTIGKGNFAKVKLARHILTGTEVAIKIIDKTQLNPSKRQKLGREVDIMKSLNHPNIVKLFSVIETEATLYLV  133 (596)
T ss_pred             cccceeeeeeeccceeEEEEeeEecCCCceEEEEEehhcccChHHHHHHHHHHHHHHhcCCcceeeeeeeeeecceeEEE
Confidence            345678889999999999999986  678899999988777776667799999999999999999999999999999999


Q ss_pred             EeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        178 SQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       178 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |||+.+|.+++|+...+  .+.+..+..++.|+.+|++|+|+.+  |||||||++|||||
T Consensus       134 ~eya~~ge~~~yl~~~g--r~~e~~ar~~F~q~vsaveYcH~k~--ivHrdLk~eNilL~  189 (596)
T KOG0586|consen  134 MEYASGGELFDYLVKHG--RMKEKEARAKFRQIVSAVEYCHSKN--IVHRDLKAENILLD  189 (596)
T ss_pred             EEeccCchhHHHHHhcc--cchhhhhhhhhHHHHHHHHHHhhcc--eeccccchhhcccc
Confidence            99999999999999887  6777999999999999999999999  99999999999997

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=99.92  E-value=4.6e-25  Score=172.36  Aligned_cols=131  Identities=13%  Similarity=0.190  Sum_probs=111.8

Q ss_pred             CCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEee
Q psy12580        103 DLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQY  180 (239)
Q Consensus       103 ~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~  180 (239)
                      +|.+.+.||+|+||.||++..+  +..+++|++..........+.+.+|+.+++.++||||+++++++...+..++||||
T Consensus         2 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   81 (287)
T cd07848           2 KFEVLGVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQENIVELKEAFRRRGKLYLVFEY   81 (287)
T ss_pred             CceEEEEecccCCEEEEEEEECCCCcEEEEEEEecccccccchhhHHHHHHHHHhCCCccccchhhhEecCCEEEEEEec
Confidence            5778899999999999999884  45677788765544444456778899999999999999999999999999999999


Q ss_pred             CCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        181 MAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       181 ~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ++++++..+.....  .+++..++.++.|++.||.|||+.+  |+||||||+||+++
T Consensus        82 ~~~~~l~~~~~~~~--~~~~~~~~~~~~qi~~~L~~lH~~~--i~H~dlkp~Nill~  134 (287)
T cd07848          82 VEKNMLELLEEMPN--GVPPEKVRSYIYQLIKAIHWCHKND--IVHRDIKPENLLIS  134 (287)
T ss_pred             CCCCHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCCHHHEEEc
Confidence            99877665544333  5899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=99.92  E-value=6.8e-25  Score=174.60  Aligned_cols=126  Identities=13%  Similarity=0.189  Sum_probs=109.2

Q ss_pred             ccccCCCCCCceeeccC--CCceeeeeeeeccCC-chHHHHHHHHHhHhhhc-CCCceeeeeeeeeCCCceEEEEeeCCC
Q psy12580        108 TKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCT-PRVSRDFNEEFPKLRIF-SHPNVLPVIGCVNSPPDLVVISQYMAW  183 (239)
Q Consensus       108 ~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~-~~~~~~~~~e~~~l~~l-~h~~iv~l~~~~~~~~~~~lv~e~~~~  183 (239)
                      +.||+|+||.||++...  +..+++|++...... ....+.+..|..++..+ +||||+++++++...+.+++||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~il~~~~~hp~Iv~~~~~~~~~~~~~lv~e~~~~   80 (329)
T cd05588           1 RVIGRGSYAKVLLVELKKTRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNHPFLVGLHSCFQTESRLFFVIEFVSG   80 (329)
T ss_pred             CeEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCCCCceEEEEEcCCEEEEEEeCCCC
Confidence            36899999999999873  466788888754322 23345677899999888 799999999999999999999999999


Q ss_pred             CCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        184 GSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       184 gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |+|.+++....  .+++..+..++.|++.||.|||+.+  |+||||||+|||++
T Consensus        81 g~L~~~~~~~~--~l~~~~~~~~~~qi~~~l~~lH~~~--ivH~dlkp~Nili~  130 (329)
T cd05588          81 GDLMFHMQRQR--KLPEEHARFYSAEISLALNFLHERG--IIYRDLKLDNVLLD  130 (329)
T ss_pred             CCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCC--eEecCCCHHHeEEC
Confidence            99999987765  6999999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=99.92  E-value=6.7e-25  Score=174.30  Aligned_cols=131  Identities=20%  Similarity=0.216  Sum_probs=111.8

Q ss_pred             CCcccccccCCCCCCceeeccCC--CceeeeeeeeccC-CchHHHHHHHHHhHhhhcCCC-ceeeeeeeeeCCCceEEEE
Q psy12580        103 DLSLHTKISSGPNGDTWRGRWQK--NDIVAKILAVRNC-TPRVSRDFNEEFPKLRIFSHP-NVLPVIGCVNSPPDLVVIS  178 (239)
Q Consensus       103 ~~~~~~~ig~g~~g~v~~~~~~~--~~~~vk~~~~~~~-~~~~~~~~~~e~~~l~~l~h~-~iv~l~~~~~~~~~~~lv~  178 (239)
                      +|.+.+.||+|+||.||+|...+  ..+++|++..... .....+.+..|..++..+.|+ +|+++++++...+.+++||
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (324)
T cd05587           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVM   80 (324)
T ss_pred             CceEEEEEeeccCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcCCCCceeeeEEEEEcCCEEEEEE
Confidence            46788999999999999998743  5688888865432 223345677889999988765 6888999999889999999


Q ss_pred             eeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        179 QYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       179 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||+++|+|.+++....  .+++..+..++.|++.||+|||+.+  |+||||||+|||++
T Consensus        81 E~~~~g~L~~~~~~~~--~~~~~~~~~~~~qi~~al~~lH~~~--ivH~dlkp~Nill~  135 (324)
T cd05587          81 EYVNGGDLMYHIQQVG--KFKEPHAVFYAAEIAIGLFFLHSKG--IIYRDLKLDNVMLD  135 (324)
T ss_pred             cCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCC--eEecCCCHHHeEEc
Confidence            9999999999998765  6899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=99.92  E-value=8.1e-25  Score=170.84  Aligned_cols=132  Identities=14%  Similarity=0.107  Sum_probs=112.7

Q ss_pred             CcccccccCCCCCCceeecc--CCCceeeeeeeeccCC-chHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEee
Q psy12580        104 LSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCT-PRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQY  180 (239)
Q Consensus       104 ~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~  180 (239)
                      |+..+.||+|+||.||++..  .+..+++|.+...... ......+.+|+.+++.++||||+++++.+..++..++||||
T Consensus         2 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   81 (285)
T cd05605           2 FRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTL   81 (285)
T ss_pred             ceEEEEEecCCCeEEEEEEEcCCCceEEEEEEehhhhhhhhhHHHHHHHHHHHHhcCCCCEeeeeeeecCCCeEEEEEec
Confidence            56778899999999999986  3567778887653322 22234567899999999999999999999999999999999


Q ss_pred             CCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        181 MAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       181 ~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +++|+|.+++.......+++..+..++.|++.||.|||+.+  |+||||||+||+++
T Consensus        82 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~--ivH~dlkp~Nil~~  136 (285)
T cd05605          82 MNGGDLKFHIYNMGNPGFDEERAVFYAAEITCGLEDLHRER--IVYRDLKPENILLD  136 (285)
T ss_pred             cCCCcHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHHCC--cEecCCCHHHEEEC
Confidence            99999999887654346899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=99.92  E-value=7.8e-25  Score=174.89  Aligned_cols=129  Identities=14%  Similarity=0.246  Sum_probs=109.6

Q ss_pred             CcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCC-----ceEE
Q psy12580        104 LSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP-----DLVV  176 (239)
Q Consensus       104 ~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~-----~~~l  176 (239)
                      |.+.+.||+|+||.||+|..  .+..+++|.+............+.+|+.+++.++||||+++++++....     ..++
T Consensus         2 y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~l   81 (338)
T cd07859           2 YKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFKDIYV   81 (338)
T ss_pred             eEEEEEEeecCCeEEEEEEECCCCCEEEEEEechhhccchhHHHHHHHHHHHHhCCCCCEeeecceEeccCCCCCceEEE
Confidence            66788999999999999986  4567888887643333334456889999999999999999999875432     4899


Q ss_pred             EEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        177 ISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       177 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||||++ ++|.+++....  .+++..+..++.|+++||.|||+.+  |+||||||+|||++
T Consensus        82 v~e~~~-~~L~~~l~~~~--~~~~~~~~~i~~qi~~aL~~LH~~~--ivH~dlkp~NIll~  137 (338)
T cd07859          82 VFELME-SDLHQVIKAND--DLTPEHHQFFLYQLLRALKYIHTAN--VFHRDLKPKNILAN  137 (338)
T ss_pred             EEecCC-CCHHHHHHhcc--cCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCCHHHeEEC
Confidence            999995 59999998765  6899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=99.92  E-value=1.4e-24  Score=167.35  Aligned_cols=135  Identities=26%  Similarity=0.504  Sum_probs=116.9

Q ss_pred             CCCCCCCcccccccCCCCCCceeeccCC-CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEE
Q psy12580         98 GISLNDLSLHTKISSGPNGDTWRGRWQK-NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVV  176 (239)
Q Consensus        98 ~~~~~~~~~~~~ig~g~~g~v~~~~~~~-~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~l  176 (239)
                      ++...++++.+.+|+|++|.||+|.+++ ..+++|.+.....   ..+.+.+|+.++++++||||+++++++...+..++
T Consensus         2 ~~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~v~iK~~~~~~~---~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   78 (261)
T cd05068           2 EIDRTSIQLLRKLGAGQFGEVWEGLWNNTTPVAVKTLKPGTM---DPKDFLAEAQIMKKLRHPKLIQLYAVCTLEEPIYI   78 (261)
T ss_pred             ccchhheeeEEEecccCCccEEEEEecCCeEEEEEeeCCCcc---cHHHHHHHHHHHHHCCCCCccceeEEEecCCCeee
Confidence            3455778899999999999999998754 4566677654322   23568889999999999999999999999999999


Q ss_pred             EEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        177 ISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       177 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +|||+.+++|.+++....+..+++..+..++.|++.||.|||+.+  |+||||||+||+++
T Consensus        79 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~--i~H~dl~p~Nil~~  137 (261)
T cd05068          79 VTELMKYGSLLEYLQGGAGRALKLPQLIDMAAQVASGMAYLEAQN--YIHRDLAARNVLVG  137 (261)
T ss_pred             eeecccCCcHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCC--eeeccCCcceEEEc
Confidence            999999999999998765556899999999999999999999999  99999999999986

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=99.92  E-value=6.3e-25  Score=174.36  Aligned_cols=126  Identities=17%  Similarity=0.248  Sum_probs=108.7

Q ss_pred             ccccCCCCCCceeecc-----CCCceeeeeeeeccC--CchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEee
Q psy12580        108 TKISSGPNGDTWRGRW-----QKNDIVAKILAVRNC--TPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQY  180 (239)
Q Consensus       108 ~~ig~g~~g~v~~~~~-----~~~~~~vk~~~~~~~--~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~  180 (239)
                      +.||+|+||.||++..     .+..+++|++.....  .......+..|+.+++.++||||+++++++...+..++||||
T Consensus         2 ~~lg~G~~g~V~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~e~   81 (323)
T cd05584           2 KVLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFIVDLIYAFQTGGKLYLILEY   81 (323)
T ss_pred             ceeeecCCeEEEEEEEcccCCCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhCCCCchhceeeEEecCCeEEEEEeC
Confidence            5789999999999874     345678888865322  122335577899999999999999999999999999999999


Q ss_pred             CCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        181 MAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       181 ~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +++|+|.+++....  .+++..+..++.|++.||+|||+.+  |+||||||+|||++
T Consensus        82 ~~~~~L~~~~~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~--ivH~dlkp~Nil~~  134 (323)
T cd05584          82 LSGGELFMHLEREG--IFMEDTACFYLSEISLALEHLHQQG--IIYRDLKPENILLD  134 (323)
T ss_pred             CCCchHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCCHHHeEEC
Confidence            99999999998766  6889999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>KOG0667|consensus

Probab=99.92  E-value=4.5e-25  Score=179.30  Aligned_cols=129  Identities=18%  Similarity=0.300  Sum_probs=113.6

Q ss_pred             CCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcC-CC-----ceeeeeeeeeCCCce
Q psy12580        103 DLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFS-HP-----NVLPVIGCVNSPPDL  174 (239)
Q Consensus       103 ~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~-h~-----~iv~l~~~~~~~~~~  174 (239)
                      .|.+.+.||+|+||.|.+|...  +..||+|+++..   +....+...|+.+|..++ |.     |+|+++++|...+++
T Consensus       187 rY~V~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~---k~f~~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F~fr~Hl  263 (586)
T KOG0667|consen  187 RYEVLEVLGKGSFGQVVKAYDHKTGEIVAIKIIKNK---KRFLRQAQIEIRILELLNKHDPDDKYNIVRMLDYFYFRNHL  263 (586)
T ss_pred             EEEEEEEecccccceeEEEEecCCCcEEEEEeeccC---hHHHHHHHHHHHHHHHHhccCCCCCeeEEEeeeccccccce
Confidence            6788999999999999999874  467777888654   334466678999999886 32     899999999999999


Q ss_pred             EEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        175 VVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       175 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |||+|.++. +|+++++.+.-..++...++.++.||+.||.+||+.+  |||+|||||||||-
T Consensus       264 ciVfELL~~-NLYellK~n~f~Glsl~~ir~~~~Qil~~L~~L~~l~--IIHcDLKPENILL~  323 (586)
T KOG0667|consen  264 CIVFELLST-NLYELLKNNKFRGLSLPLVRKFAQQILTALLFLHELG--IIHCDLKPENILLK  323 (586)
T ss_pred             eeeehhhhh-hHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC--eeeccCChhheeec
Confidence            999999977 9999999987778999999999999999999999999  99999999999983

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=99.92  E-value=7.8e-25  Score=174.53  Aligned_cols=131  Identities=14%  Similarity=0.203  Sum_probs=112.0

Q ss_pred             CCcccccccCCCCCCceeecc-----CCCceeeeeeeeccC--CchHHHHHHHHHhHhhhc-CCCceeeeeeeeeCCCce
Q psy12580        103 DLSLHTKISSGPNGDTWRGRW-----QKNDIVAKILAVRNC--TPRVSRDFNEEFPKLRIF-SHPNVLPVIGCVNSPPDL  174 (239)
Q Consensus       103 ~~~~~~~ig~g~~g~v~~~~~-----~~~~~~vk~~~~~~~--~~~~~~~~~~e~~~l~~l-~h~~iv~l~~~~~~~~~~  174 (239)
                      +|.+.+.||+|+||.||++..     .+..+++|++.....  .....+.+..|..++..+ .||+|+++++++...+..
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~   80 (332)
T cd05614           1 NFELLKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPFLVTLHYAFQTEAKL   80 (332)
T ss_pred             CceEEEEEeecCCEEEEEEEEcccCCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhccCCCCcccEEEEEecCCEE
Confidence            467889999999999998865     346677888764322  122335677899999999 589999999999999999


Q ss_pred             EEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        175 VVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       175 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ++||||+++|+|.+++....  .+++..+..++.|++.||.|||+.+  |+||||||+|||++
T Consensus        81 ~lv~e~~~~g~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~--ivHrDlkp~Nili~  139 (332)
T cd05614          81 HLILDYVSGGEMFTHLYQRD--NFSEDEVRFYSGEIILALEHLHKLG--IVYRDIKLENILLD  139 (332)
T ss_pred             EEEEeCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCC--cEecCCCHHHeEEC
Confidence            99999999999999998765  6899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>KOG0033|consensus

Probab=99.92  E-value=2e-26  Score=167.08  Aligned_cols=133  Identities=15%  Similarity=0.223  Sum_probs=119.7

Q ss_pred             CCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEE
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVIS  178 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~  178 (239)
                      .+.|++.+.||+|+|+.|+++..  .++..++|.+.....+....+.+.+|+++-+.++||||+++...+......+||+
T Consensus        10 ~d~y~l~e~igkG~FSvVrRc~~~~tg~~fa~kiin~~k~~~~~~e~l~rEarIC~~LqHP~IvrL~~ti~~~~~~ylvF   89 (355)
T KOG0033|consen   10 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF   89 (355)
T ss_pred             chhhhHHHHHccCchHHHHHHHhccchHHHHHHHhhhhhhccccHHHHHHHHHHHHhcCCCcEeehhhhhcccceeEEEE
Confidence            36788999999999999999876  5678888988877776667788999999999999999999999999999999999


Q ss_pred             eeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        179 QYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       179 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |++.|++|..-|-.+.  .+++..+..+++||+++|.|.|+.+  |||||+||+|+++.
T Consensus        90 e~m~G~dl~~eIV~R~--~ySEa~aSH~~rQiLeal~yCH~n~--IvHRDvkP~nllLA  144 (355)
T KOG0033|consen   90 DLVTGGELFEDIVARE--FYSEADASHCIQQILEALAYCHSNG--IVHRDLKPENLLLA  144 (355)
T ss_pred             ecccchHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhcC--ceeccCChhheeee
Confidence            9999999987665543  6899999999999999999999999  99999999999985

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=99.92  E-value=1.1e-24  Score=171.62  Aligned_cols=132  Identities=14%  Similarity=0.281  Sum_probs=112.6

Q ss_pred             CCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEE
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVIS  178 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~  178 (239)
                      .++|.+.+.||+|+||.||+|..  .+..+++|++...... .....+.+|+.+++.++||||+++++++......++||
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~   82 (303)
T cd07869           4 ADSYEKLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEE-GTPFTAIREASLLKGLKHANIVLLHDIIHTKETLTLVF   82 (303)
T ss_pred             cccceEeeeEEecCCEEEEEEEECCCCCEEEEEEecccccc-ccchhHHHHHHHHhhCCCCCcCeEEEEEecCCeEEEEE
Confidence            36788999999999999999987  4567788887644322 22345678999999999999999999999999999999


Q ss_pred             eeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        179 QYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       179 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||+. ++|.+++....+ .+++..+..++.|++.||+|||+.+  |+||||||+|||++
T Consensus        83 e~~~-~~l~~~~~~~~~-~~~~~~~~~~~~qi~~al~~lH~~~--ivH~dlkp~Nill~  137 (303)
T cd07869          83 EYVH-TDLCQYMDKHPG-GLHPENVKLFLFQLLRGLSYIHQRY--ILHRDLKPQNLLIS  137 (303)
T ss_pred             ECCC-cCHHHHHHhCCC-CCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCCHHHEEEC
Confidence            9996 588888876542 5899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=99.92  E-value=9.1e-25  Score=174.10  Aligned_cols=133  Identities=15%  Similarity=0.163  Sum_probs=112.9

Q ss_pred             CCCcccccccCCCCCCceeeccCC--CceeeeeeeeccC-CchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEE
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRWQK--NDIVAKILAVRNC-TPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVIS  178 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~~~--~~~~vk~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~  178 (239)
                      ++|.+.+.||+|+||.||++...+  ..+++|++..... .......+..|..++..++|++|+++++++...+..++||
T Consensus         1 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (332)
T cd05623           1 EDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDNQWITTLHYAFQDENNLYLVM   80 (332)
T ss_pred             CCceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEeHHHHHHhhHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCEEEEEE
Confidence            367888999999999999998743  4566787754321 2223345778889999999999999999999999999999


Q ss_pred             eeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        179 QYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       179 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||+++|+|.+++.+... .+++..+..++.|++.||+|||+.+  |+||||||+|||++
T Consensus        81 ey~~~g~L~~~l~~~~~-~l~~~~~~~~~~qi~~al~~lH~~~--iiHrDlkp~Nili~  136 (332)
T cd05623          81 DYYVGGDLLTLLSKFED-RLPEDMARFYLAEMVIAIDSVHQLH--YVHRDIKPDNILMD  136 (332)
T ss_pred             eccCCCcHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHCC--eEecCCCHHHEEEC
Confidence            99999999999987432 5899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=99.92  E-value=2.5e-24  Score=165.32  Aligned_cols=133  Identities=20%  Similarity=0.260  Sum_probs=118.0

Q ss_pred             CCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEee
Q psy12580        103 DLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQY  180 (239)
Q Consensus       103 ~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~  180 (239)
                      +|...+.+|+|++|.||++..  .+..+++|.+............+..|+.+++.++|||++++++++...+..++||||
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   80 (256)
T cd08529           1 DFEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSYIIRYYESFLDKGKLNIVMEY   80 (256)
T ss_pred             CceEeEEecCCCCeEEEEEEEcCCCcEEEEEEeehhhCCHHHHHHHHHHHHHHHhcCCCCeehheeeeccCCEEEEEEEe
Confidence            466778899999999999987  456777788766555556667889999999999999999999999999999999999


Q ss_pred             CCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        181 MAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       181 ~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +++++|.+++....+..+++..+..++.|++.||.|||+.+  ++|+||||+||+++
T Consensus        81 ~~~~~L~~~l~~~~~~~~~~~~~~~i~~~l~~al~~lH~~~--i~h~dl~~~nili~  135 (256)
T cd08529          81 AENGDLHKLLKMQRGRPLPEDQVWRFFIQILLGLAHLHSKK--ILHRDIKSLNLFLD  135 (256)
T ss_pred             CCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCCcceEEEe
Confidence            99999999998764457899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=99.92  E-value=3.1e-24  Score=165.90  Aligned_cols=134  Identities=26%  Similarity=0.452  Sum_probs=115.1

Q ss_pred             CCCCCcccccccCCCCCCceeeccCC-----CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCce
Q psy12580        100 SLNDLSLHTKISSGPNGDTWRGRWQK-----NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDL  174 (239)
Q Consensus       100 ~~~~~~~~~~ig~g~~g~v~~~~~~~-----~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~  174 (239)
                      ..++|...+.||+|+||.||+|.+..     ..+++|.+... ........+..|+.+++.++||||+++++++...+..
T Consensus         2 ~~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~-~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   80 (266)
T cd05033           2 DPSYVTIEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAG-SSDKQRLDFLTEASIMGQFDHPNIIRLEGVVTKSRPV   80 (266)
T ss_pred             ChHHceeeeEecCCccceEEEEEEccCCCCcceEEEEEcCCC-CChHHHHHHHHHHHHHHhCCCCCcceEeEEEecCCce
Confidence            34678889999999999999998732     24566766433 2333456788999999999999999999999999999


Q ss_pred             EEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        175 VVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       175 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +++|||+++++|.+++....+ .+++..+..++.|++.||.|||+.+  |+|+||||+|||++
T Consensus        81 ~iv~e~~~~~~L~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~Lh~~~--i~H~di~p~nili~  140 (266)
T cd05033          81 MIITEYMENGSLDKFLRENDG-KFTVGQLVGMLRGIASGMKYLSEMN--YVHRDLAARNILVN  140 (266)
T ss_pred             EEEEEcCCCCCHHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHhCC--cccCCCCcceEEEc
Confidence            999999999999999987543 5899999999999999999999999  99999999999987

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=99.92  E-value=1.5e-24  Score=167.35  Aligned_cols=135  Identities=21%  Similarity=0.453  Sum_probs=116.9

Q ss_pred             CCCCCCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceE
Q psy12580         98 GISLNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLV  175 (239)
Q Consensus        98 ~~~~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~  175 (239)
                      .+...++.+.+.+|+|++|.||+|.+.  +..+++|.+...   ......+.+|+.+++.++||||+++++++...+..+
T Consensus         2 ~~~~~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~K~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   78 (263)
T cd05052           2 EMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED---TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFY   78 (263)
T ss_pred             CCchHHeEEeeecCCcccceEEEEEEecCCceEEEEEecCC---chHHHHHHHHHHHHHhCCCCChhheEEEEcCCCCcE
Confidence            355667888899999999999999874  456777776532   223456889999999999999999999999999999


Q ss_pred             EEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        176 VISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       176 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ++|||+++++|.+++.......+++..++.++.|+++||.|||+.+  ++||||||+||+++
T Consensus        79 lv~e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~~--i~H~dlkp~nil~~  138 (263)
T cd05052          79 IITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKN--FIHRDLAARNCLVG  138 (263)
T ss_pred             EEEEeCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhCC--EeecccCcceEEEc
Confidence            9999999999999998755456899999999999999999999999  99999999999985

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=99.92  E-value=1.1e-24  Score=172.40  Aligned_cols=126  Identities=18%  Similarity=0.206  Sum_probs=105.9

Q ss_pred             ccccCCCCCCceeeccC--CCceeeeeeeeccC-CchHHHHHHHHHhHhhhc-CCCceeeeeeeeeCCCceEEEEeeCCC
Q psy12580        108 TKISSGPNGDTWRGRWQ--KNDIVAKILAVRNC-TPRVSRDFNEEFPKLRIF-SHPNVLPVIGCVNSPPDLVVISQYMAW  183 (239)
Q Consensus       108 ~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~-~~~~~~~~~~e~~~l~~l-~h~~iv~l~~~~~~~~~~~lv~e~~~~  183 (239)
                      +.||+|+||.||+|...  +..+++|++..... .....+....|..++... +||||+++++++...+..++||||+++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~i~~~~~~~~~~~~~~lv~e~~~g   80 (316)
T cd05592           1 KVLGKGSFGKVMLAELKGTNEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFLTHLFCTFQTKEHLFFVMEYLNG   80 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            36899999999999874  45678888865432 222334456677777654 899999999999999999999999999


Q ss_pred             CCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        184 GSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       184 gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |+|.+++....  .+++..+..++.|++.||.|||+.+  |+||||||+|||++
T Consensus        81 g~L~~~~~~~~--~~~~~~~~~~~~qi~~al~~LH~~~--ivH~dlkp~Nill~  130 (316)
T cd05592          81 GDLMFHIQSSG--RFDEARARFYAAEIICGLQFLHKKG--IIYRDLKLDNVLLD  130 (316)
T ss_pred             CcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCC--EEeCCCCHHHeEEC
Confidence            99999998765  6899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=99.92  E-value=1.3e-24  Score=172.42  Aligned_cols=126  Identities=16%  Similarity=0.209  Sum_probs=108.0

Q ss_pred             ccccCCCCCCceeeccC--CCceeeeeeeeccC-CchHHHHHHHHHhHhhhc-CCCceeeeeeeeeCCCceEEEEeeCCC
Q psy12580        108 TKISSGPNGDTWRGRWQ--KNDIVAKILAVRNC-TPRVSRDFNEEFPKLRIF-SHPNVLPVIGCVNSPPDLVVISQYMAW  183 (239)
Q Consensus       108 ~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~-~~~~~~~~~~e~~~l~~l-~h~~iv~l~~~~~~~~~~~lv~e~~~~  183 (239)
                      +.||+|+||.||+|...  +..+++|++..... .......+..|..++..+ +||+|+++++++...+..++||||+++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~   80 (321)
T cd05591           1 KVLGKGSFGKVMLAELKGTDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFLTALHCCFQTKDRLFFVMEYVNG   80 (321)
T ss_pred             CccccCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCeEEEEEeCCCC
Confidence            36899999999999874  45678888865432 223335567788888866 799999999999999999999999999


Q ss_pred             CCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        184 GSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       184 gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |+|..++....  .+++..+..++.|++.||.|||+.+  |+||||||+|||++
T Consensus        81 ~~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~~--ivHrDikp~Nill~  130 (321)
T cd05591          81 GDLMFQIQRSR--KFDEPRSRFYAAEVTLALMFLHRHG--VIYRDLKLDNILLD  130 (321)
T ss_pred             CcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCC--eeccCCCHHHeEEC
Confidence            99999998765  6899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=99.92  E-value=1.3e-24  Score=172.86  Aligned_cols=126  Identities=14%  Similarity=0.187  Sum_probs=108.3

Q ss_pred             ccccCCCCCCceeeccC--CCceeeeeeeeccC-CchHHHHHHHHHhHhhhc-CCCceeeeeeeeeCCCceEEEEeeCCC
Q psy12580        108 TKISSGPNGDTWRGRWQ--KNDIVAKILAVRNC-TPRVSRDFNEEFPKLRIF-SHPNVLPVIGCVNSPPDLVVISQYMAW  183 (239)
Q Consensus       108 ~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~-~~~~~~~~~~e~~~l~~l-~h~~iv~l~~~~~~~~~~~lv~e~~~~  183 (239)
                      +.||+|+||.||++...  +..+++|++..... .......+..|..++.++ +||||+++++++...+..++||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~~~~   80 (329)
T cd05618           1 RVIGRGSYAKVLLVRLKKTERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNG   80 (329)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEhhHhcchhHHHHHHHHHHHHHhcCCCCcCCceeeEEEeCCEEEEEEeCCCC
Confidence            36899999999999873  45677788865432 233345677888888776 799999999999999999999999999


Q ss_pred             CCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        184 GSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       184 gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |+|..++....  .+++..+..++.|++.||+|||+.+  |+||||||+|||++
T Consensus        81 ~~L~~~~~~~~--~l~~~~~~~i~~qi~~~l~~lH~~~--ivH~Dikp~Nili~  130 (329)
T cd05618          81 GDLMFHMQRQR--KLPEEHARFYSAEISLALNYLHERG--IIYRDLKLDNVLLD  130 (329)
T ss_pred             CCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCC--eeeCCCCHHHEEEC
Confidence            99999987765  6899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>KOG0196|consensus

Probab=99.92  E-value=2.7e-25  Score=183.47  Aligned_cols=139  Identities=26%  Similarity=0.435  Sum_probs=124.9

Q ss_pred             ccCCCCCCCcccccccCCCCCCceeeccC--C---CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeC
Q psy12580         96 HKGISLNDLSLHTKISSGPNGDTWRGRWQ--K---NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNS  170 (239)
Q Consensus        96 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~~--~---~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~  170 (239)
                      ..+++.+.+.+.++||.|.||.|++|+.+  +   ..|++|.++... ......+|+.|+.+|.+..||||++|-|+...
T Consensus       623 akEId~s~i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~Gy-tekqrrdFL~EAsIMGQFdHPNIIrLEGVVTk  701 (996)
T KOG0196|consen  623 AKEIDPSCVKIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGY-TEKQRRDFLSEASIMGQFDHPNIIRLEGVVTK  701 (996)
T ss_pred             hhhcChhheEEEEEEecccccceecccccCCCCcceeEEEeeeccCc-cHHHHhhhhhhhhhcccCCCCcEEEEEEEEec
Confidence            35688889999999999999999999873  2   456778886543 45556789999999999999999999999999


Q ss_pred             CCceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceeec
Q psy12580        171 PPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVYI  238 (239)
Q Consensus       171 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~~  238 (239)
                      ..+++||+|||++|+|..+|+.+.++ |+..++.-+.+.|+.||+||-+++  +|||||..+|||++.
T Consensus       702 s~PvMIiTEyMENGsLDsFLR~~DGq-ftviQLVgMLrGIAsGMkYLsdm~--YVHRDLAARNILVNs  766 (996)
T KOG0196|consen  702 SKPVMIITEYMENGSLDSFLRQNDGQ-FTVIQLVGMLRGIASGMKYLSDMN--YVHRDLAARNILVNS  766 (996)
T ss_pred             CceeEEEhhhhhCCcHHHHHhhcCCc-eEeehHHHHHHHHHHHhHHHhhcC--chhhhhhhhheeecc
Confidence            99999999999999999999998865 999999999999999999999999  999999999999974

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=99.92  E-value=2.6e-24  Score=165.43  Aligned_cols=132  Identities=26%  Similarity=0.431  Sum_probs=113.9

Q ss_pred             CCCCCcccccccCCCCCCceeeccCC-CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEE
Q psy12580        100 SLNDLSLHTKISSGPNGDTWRGRWQK-NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVIS  178 (239)
Q Consensus       100 ~~~~~~~~~~ig~g~~g~v~~~~~~~-~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~  178 (239)
                      +..++.+.+.+|+|+||.||++.+++ ..+++|.+.....   ....+..|+.+++.++||||+++++++...+..++||
T Consensus         2 ~~~~~~~~~~lg~G~~~~v~~~~~~~~~~~~iK~~~~~~~---~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~   78 (256)
T cd05059           2 DPSELTFLKELGSGQFGVVHLGKWRGKIDVAIKMIREGAM---SEDDFIEEAKVMMKLSHPNLVQLYGVCTKQRPIFIVT   78 (256)
T ss_pred             ChHHcchhhhhccCCCceEEEeEecCCccEEEEEeccCCC---CHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCceEEEE
Confidence            34567888999999999999998855 4567777653322   2346788999999999999999999999999999999


Q ss_pred             eeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        179 QYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       179 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||+++++|.+++..... .+++..+..++.|++.||.|||+.+  ++||||||+||+++
T Consensus        79 e~~~~~~L~~~l~~~~~-~~~~~~~~~i~~qi~~~l~~lH~~~--i~H~dl~p~ni~i~  134 (256)
T cd05059          79 EYMANGCLLNYLRERKG-KLGTEWLLDMCSDVCEAMEYLESNG--FIHRDLAARNCLVG  134 (256)
T ss_pred             ecCCCCCHHHHHHhccc-CCCHHHHHHHHHHHHHHHHHHHHCC--cccccccHhhEEEC
Confidence            99999999999986543 5899999999999999999999999  99999999999986

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>KOG4717|consensus

Probab=99.92  E-value=9.3e-25  Score=173.45  Aligned_cols=133  Identities=13%  Similarity=0.268  Sum_probs=120.8

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEe
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQ  179 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e  179 (239)
                      .-|.+.+.||+|.|+.|-.|+.  .|..|+||++.+...+.-....+.+|++.|+.++|||||++|++..+...+|||+|
T Consensus        18 GLYDLekTlG~GHFAVVKLArHVFTGekVAVKviDKTKlD~~st~hlfqEVRCMKLVQHpNiVRLYEViDTQTKlyLiLE   97 (864)
T KOG4717|consen   18 GLYDLEKTLGRGHFAVVKLARHVFTGEKVAVKVIDKTKLDTLSTGHLFQEVRCMKLVQHPNIVRLYEVIDTQTKLYLILE   97 (864)
T ss_pred             eeehhhhhhcCCceehhhhhhhhcccceeEEEEecccccchhhhhHHHHHHHHHHHhcCcCeeeeeehhcccceEEEEEE
Confidence            3467889999999999988875  88999999998877777666778899999999999999999999999999999999


Q ss_pred             eCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       180 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +-.+|+|++||.+.. ..+.+..+.+++.||+.|+.|+|...  +|||||||+|+.+.
T Consensus        98 LGD~GDl~DyImKHe-~Gl~E~La~kYF~QI~~AI~YCHqLH--VVHRDLKPENVVFF  152 (864)
T KOG4717|consen   98 LGDGGDLFDYIMKHE-EGLNEDLAKKYFAQIVHAISYCHQLH--VVHRDLKPENVVFF  152 (864)
T ss_pred             ecCCchHHHHHHhhh-ccccHHHHHHHHHHHHHHHHHHhhhh--hhcccCCcceeEEe
Confidence            999999999998765 36999999999999999999999988  99999999999763

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=99.92  E-value=1.2e-24  Score=172.95  Aligned_cols=129  Identities=17%  Similarity=0.249  Sum_probs=108.1

Q ss_pred             CcccccccCCCCCCceeeccC--CCceeeeeeeeccC-CchHHHHHHHHHhHh---hhcCCCceeeeeeeeeCCCceEEE
Q psy12580        104 LSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNC-TPRVSRDFNEEFPKL---RIFSHPNVLPVIGCVNSPPDLVVI  177 (239)
Q Consensus       104 ~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~-~~~~~~~~~~e~~~l---~~l~h~~iv~l~~~~~~~~~~~lv  177 (239)
                      |.+.+.||+|+||.||++...  +..+++|++..... .....+.+..|..++   ..++||||+++++++...+..++|
T Consensus         1 y~i~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~~~~~~~~lv   80 (324)
T cd05589           1 FRCLAVLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPFLVNLFACFQTEDHVCFV   80 (324)
T ss_pred             CeEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccccCCCChhceeeEEEcCCEEEEE
Confidence            456788999999999999873  56788888865432 222335566666655   456799999999999999999999


Q ss_pred             EeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        178 SQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       178 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |||+++|+|..++...   .+++..+..++.|++.||.|||+.+  |+||||||+|||++
T Consensus        81 ~E~~~~~~L~~~~~~~---~l~~~~~~~~~~qi~~al~~lH~~~--ivHrdlkp~Nill~  135 (324)
T cd05589          81 MEYAAGGDLMMHIHTD---VFSEPRAVFYAACVVLGLQYLHENK--IVYRDLKLDNLLLD  135 (324)
T ss_pred             EcCCCCCcHHHHhhcC---CCCHHHHHHHHHHHHHHHHHHHhCC--eEecCCCHHHeEEC
Confidence            9999999999888653   4899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.92  E-value=3.8e-24  Score=165.08  Aligned_cols=125  Identities=14%  Similarity=0.343  Sum_probs=104.6

Q ss_pred             ccccCCCCCCceeeccCCC--------------ceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCc
Q psy12580        108 TKISSGPNGDTWRGRWQKN--------------DIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPD  173 (239)
Q Consensus       108 ~~ig~g~~g~v~~~~~~~~--------------~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~  173 (239)
                      +.||+|+||.||+|.+...              .+++|++...  .......+..|+.++..++||||+++++++.....
T Consensus         1 ~~lg~G~~~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~--~~~~~~~~~~~~~~l~~l~hp~iv~~~~~~~~~~~   78 (262)
T cd05077           1 EHLGRGTRTQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPS--HRDISLAFFETASMMRQVSHKHIVLLYGVCVRDVE   78 (262)
T ss_pred             CccccCCcceEeeeecccCCCccccccchhhceeEEEeecChh--hhhHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCC
Confidence            3689999999999986321              2455554332  22334567888999999999999999999998889


Q ss_pred             eEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        174 LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .++||||+++|+|..++..... .+++..+..++.||++||+|||+.+  |+||||||+|||++
T Consensus        79 ~~lv~e~~~~~~l~~~~~~~~~-~~~~~~~~~i~~qi~~~l~~lH~~~--ivH~dlkp~Nill~  139 (262)
T cd05077          79 NIMVEEFVEFGPLDLFMHRKSD-VLTTPWKFKVAKQLASALSYLEDKD--LVHGNVCTKNILLA  139 (262)
T ss_pred             CEEEEecccCCCHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHhhhCC--eECCCCCcccEEEe
Confidence            9999999999999998876442 5899999999999999999999999  99999999999996

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=99.92  E-value=1.4e-24  Score=172.24  Aligned_cols=126  Identities=19%  Similarity=0.273  Sum_probs=105.3

Q ss_pred             ccccCCCCCCceeeccC--CCceeeeeeeeccC-CchHHHHHHHHHh-HhhhcCCCceeeeeeeeeCCCceEEEEeeCCC
Q psy12580        108 TKISSGPNGDTWRGRWQ--KNDIVAKILAVRNC-TPRVSRDFNEEFP-KLRIFSHPNVLPVIGCVNSPPDLVVISQYMAW  183 (239)
Q Consensus       108 ~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~-~~~~~~~~~~e~~-~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~~~  183 (239)
                      +.||+|+||.||+|...  +..+++|++..... .......+..|.. +++.++||||+++++++...+..++||||+++
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~   80 (321)
T cd05603           1 KVIGKGSFGKVLLAKRKSDGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFLVGLHYSFQTAEKLYFVLDYVNG   80 (321)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHHhCCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            36899999999999873  45677888865432 1222344555554 57788999999999999999999999999999


Q ss_pred             CCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        184 GSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       184 gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |+|..++....  .+++..+..++.||+.||.|||+.+  |+||||||+|||++
T Consensus        81 ~~L~~~l~~~~--~~~~~~~~~~~~qi~~~L~~lH~~~--ivH~Dlkp~NIll~  130 (321)
T cd05603          81 GELFFHLQRER--CFLEPRARFYAAEVASAIGYLHSLN--IIYRDLKPENILLD  130 (321)
T ss_pred             CCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCC--eEeccCCHHHeEEC
Confidence            99999887655  6899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=99.92  E-value=4.2e-24  Score=166.62  Aligned_cols=135  Identities=21%  Similarity=0.382  Sum_probs=112.8

Q ss_pred             CCCCCcccccccCCCCCCceeecc------CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCc
Q psy12580        100 SLNDLSLHTKISSGPNGDTWRGRW------QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPD  173 (239)
Q Consensus       100 ~~~~~~~~~~ig~g~~g~v~~~~~------~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~  173 (239)
                      +.+++++.+.||+|+||.||+|.+      .+..+++|.+.... .......+.+|+.+++.++||||+++++++.....
T Consensus         3 ~~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~   81 (283)
T cd05090           3 PLSAVRFMEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDIN-NPQQWGEFQQEASLMAELHHPNIVCLLGVVTQEQP   81 (283)
T ss_pred             ChhhceeeeeccccCCcceEEEEEecCCCCCcceEEEEeccCCC-CHHHHHHHHHHHHHHhhCCCCCeeeEEEEEecCCc
Confidence            456788889999999999999974      22455666665322 23344678889999999999999999999999999


Q ss_pred             eEEEEeeCCCCCHHHHhhcCC---------------CcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        174 LVVISQYMAWGSLYALLHEGA---------------GIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~~~---------------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .++||||+.+++|.+++....               ...+++..+..++.|++.||.|||+.+  ++||||||+|||++
T Consensus        82 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~--i~H~dlkp~nili~  158 (283)
T cd05090          82 VCMLFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGMEYLSSHF--FVHKDLAARNILIG  158 (283)
T ss_pred             eEEEEEcCCCCcHHHHHHhcCCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHhcC--eehhccccceEEEc
Confidence            999999999999999986321               124788999999999999999999999  99999999999986

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=99.92  E-value=4.8e-24  Score=167.90  Aligned_cols=137  Identities=26%  Similarity=0.426  Sum_probs=113.3

Q ss_pred             CCCCCCCcccccccCCCCCCceeeccCC--Cce--eeeeeeeccCCchHHHHHHHHHhHhhhc-CCCceeeeeeeeeCCC
Q psy12580         98 GISLNDLSLHTKISSGPNGDTWRGRWQK--NDI--VAKILAVRNCTPRVSRDFNEEFPKLRIF-SHPNVLPVIGCVNSPP  172 (239)
Q Consensus        98 ~~~~~~~~~~~~ig~g~~g~v~~~~~~~--~~~--~vk~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~l~~~~~~~~  172 (239)
                      .+..++|++.+.||+|+||.||+|.+..  ..+  ++|.+.. .........+.+|+.++.++ +||||+++++++...+
T Consensus         3 ~~~~~~~~~~~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~-~~~~~~~~~~~~Ei~~l~~l~~h~~iv~~~~~~~~~~   81 (303)
T cd05088           3 VLEWNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKE-YASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRG   81 (303)
T ss_pred             ccchhhceeeeeecCCCCceEEEEEEccCCceeeEEEEEecc-cCCHHHHHHHHHHHHHHHHhcCCCCcceEEEEECCCC
Confidence            3556788899999999999999998733  333  3344332 22233446788899999999 8999999999999999


Q ss_pred             ceEEEEeeCCCCCHHHHhhcCC--------------CcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        173 DLVVISQYMAWGSLYALLHEGA--------------GIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       173 ~~~lv~e~~~~gsL~~~l~~~~--------------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ..++||||+++|+|.+++....              ...+++.+++.++.|++.||+|||+.+  ++||||||+|||++
T Consensus        82 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~g--i~H~dlkp~Nili~  158 (303)
T cd05088          82 YLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQ--FIHRDLAARNILVG  158 (303)
T ss_pred             CceEEEEeCCCCcHHHHHHhcccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHhCC--ccccccchheEEec
Confidence            9999999999999999997532              125789999999999999999999999  99999999999996

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=99.92  E-value=1.4e-24  Score=172.13  Aligned_cols=126  Identities=19%  Similarity=0.254  Sum_probs=107.9

Q ss_pred             ccccCCCCCCceeeccC--CCceeeeeeeeccC-CchHHHHHHHHHhHhhhc-CCCceeeeeeeeeCCCceEEEEeeCCC
Q psy12580        108 TKISSGPNGDTWRGRWQ--KNDIVAKILAVRNC-TPRVSRDFNEEFPKLRIF-SHPNVLPVIGCVNSPPDLVVISQYMAW  183 (239)
Q Consensus       108 ~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~-~~~~~~~~~~e~~~l~~l-~h~~iv~l~~~~~~~~~~~lv~e~~~~  183 (239)
                      +.||+|+||.||++...  +..+++|++..... .......+..|..++..+ .||||+++++++...+.+++||||+++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~~iv~Ey~~~   80 (320)
T cd05590           1 RVLGKGSFGKVMLARLKESGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLYCCFQTPDRLFFVMEFVNG   80 (320)
T ss_pred             CeeeeCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhccCCCchhceeeEEEcCCEEEEEEcCCCC
Confidence            36899999999999874  45677888765422 223345667788888876 699999999999999999999999999


Q ss_pred             CCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        184 GSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       184 gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |+|.+++....  .+++..+..++.|++.||+|||+.+  |+||||||+|||++
T Consensus        81 g~L~~~i~~~~--~l~~~~~~~~~~ql~~~L~~lH~~~--ivH~dlkp~NIli~  130 (320)
T cd05590          81 GDLMFHIQKSR--RFDEARARFYAAEITSALMFLHDKG--IIYRDLKLDNVLLD  130 (320)
T ss_pred             chHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCC--eEeCCCCHHHeEEC
Confidence            99999998765  6899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=99.92  E-value=2.8e-24  Score=167.36  Aligned_cols=126  Identities=14%  Similarity=0.111  Sum_probs=106.5

Q ss_pred             ccCCCCCCceeecc--CCCceeeeeeeeccCCc-hHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEeeCCCCCH
Q psy12580        110 ISSGPNGDTWRGRW--QKNDIVAKILAVRNCTP-RVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSL  186 (239)
Q Consensus       110 ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~-~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~~~gsL  186 (239)
                      ||+|+||.||++..  .+..+++|.+....... ...+.+..|+.+++.++||||+++.+++......++||||+++|+|
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~g~L   80 (280)
T cd05608           1 LGKGGFGEVSACQMRATGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKVHSRFIVSLAYAFQTKTDLCLVMTIMNGGDL   80 (280)
T ss_pred             CCCCCceeEEEEEEccCCcEEEEEeeeHHHHhhhHHHHHHHHHHHHHHhCCCCcEeeeeEEEcCCCeEEEEEeCCCCCCH
Confidence            68999999999986  45677888876543222 2235577899999999999999999999999999999999999999


Q ss_pred             HHHhhcC--CCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        187 YALLHEG--AGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       187 ~~~l~~~--~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .+++...  ....+++..+..++.|++.||+|||+.+  |+||||||+||+++
T Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~--i~H~dlkp~Nili~  131 (280)
T cd05608          81 RYHIYNVDEENPGFPEPRACFYTAQIISGLEHLHQRR--IIYRDLKPENVLLD  131 (280)
T ss_pred             HHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCCHHHEEEC
Confidence            9887532  2236899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=99.92  E-value=2e-24  Score=171.64  Aligned_cols=126  Identities=17%  Similarity=0.268  Sum_probs=106.0

Q ss_pred             ccccCCCCCCceeecc--CCCceeeeeeeeccC-CchHHHHHHHHHh-HhhhcCCCceeeeeeeeeCCCceEEEEeeCCC
Q psy12580        108 TKISSGPNGDTWRGRW--QKNDIVAKILAVRNC-TPRVSRDFNEEFP-KLRIFSHPNVLPVIGCVNSPPDLVVISQYMAW  183 (239)
Q Consensus       108 ~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~-~~~~~~~~~~e~~-~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~~~  183 (239)
                      +.||+|+||.||++..  .+..+++|++..... .......+..|.. +++.++||||+++++++...+..++||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~hp~iv~~~~~~~~~~~~~lv~e~~~~   80 (325)
T cd05604           1 KVIGKGSFGKVLLAKRKLDGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTTEKLYFVLDFVNG   80 (325)
T ss_pred             CceeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHHhCCCCCCccEEEEEecCCEEEEEEcCCCC
Confidence            3689999999999986  456778888865432 2223344555654 46678999999999999999999999999999


Q ss_pred             CCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        184 GSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       184 gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |+|..++....  .+++..+..++.||+.||+|||+.|  |+||||||+|||++
T Consensus        81 ~~L~~~l~~~~--~~~~~~~~~~~~qi~~al~~lH~~g--ivH~Dlkp~NIll~  130 (325)
T cd05604          81 GELFFHLQRER--SFPEPRARFYAAEIASALGYLHSIN--IVYRDLKPENILLD  130 (325)
T ss_pred             CCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCC--eeecCCCHHHeEEC
Confidence            99999988765  6899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=99.91  E-value=3.7e-24  Score=164.90  Aligned_cols=134  Identities=23%  Similarity=0.448  Sum_probs=114.9

Q ss_pred             CCCCCCCcccccccCCCCCCceeeccCC-CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEE
Q psy12580         98 GISLNDLSLHTKISSGPNGDTWRGRWQK-NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVV  176 (239)
Q Consensus        98 ~~~~~~~~~~~~ig~g~~g~v~~~~~~~-~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~l  176 (239)
                      .+..++|++.++||+|+||.||+|...+ ..+++|.+......   ...+.+|+.+++.++||||+++++++. .+..++
T Consensus         2 ~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~a~K~~~~~~~~---~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~   77 (260)
T cd05067           2 EVPRETLKLVKKLGAGQFGEVWMGYYNGHTKVAIKSLKQGSMS---PEAFLAEANLMKQLQHPRLVRLYAVVT-QEPIYI   77 (260)
T ss_pred             ccchHHceeeeeeccCccceEEeeecCCCceEEEEEecCCCCc---HHHHHHHHHHHHhcCCcCeeeEEEEEc-cCCcEE
Confidence            4556788999999999999999998744 66777877543322   356888999999999999999999874 456899


Q ss_pred             EEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        177 ISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       177 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +|||+.+++|.+++....+..+++.++..++.|++.||+|||+.+  ++||||||+||+++
T Consensus        78 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH~~~--i~H~dl~p~ni~i~  136 (260)
T cd05067          78 ITEYMENGSLVDFLKTPEGIKLTINKLIDMAAQIAEGMAFIERKN--YIHRDLRAANILVS  136 (260)
T ss_pred             EEEcCCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHhcCC--eecccccHHhEEEc
Confidence            999999999999998755557899999999999999999999999  99999999999986

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=99.91  E-value=4.7e-24  Score=163.95  Aligned_cols=134  Identities=25%  Similarity=0.434  Sum_probs=116.8

Q ss_pred             CCCCCCCcccccccCCCCCCceeeccCCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeee-CCCceEE
Q psy12580         98 GISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVN-SPPDLVV  176 (239)
Q Consensus        98 ~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~-~~~~~~l  176 (239)
                      .++..+|.+.+.+|+|+||.||++...+..+++|.....    ...+.+.+|+.+++.++|++++++++++. ..+..++
T Consensus         2 ~~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~k~~~~~----~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~l   77 (256)
T cd05082           2 ALNMKELKLLQTIGKGEFGDVMLGDYRGNKVAVKCIKND----ATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYI   77 (256)
T ss_pred             CccHHhCeeeeeecccCCCeEEEEEEcCCcEEEEEeCCC----chHHHHHHHHHHHHhCCCCCeeeEEEEEEcCCCceEE
Confidence            355678899999999999999999998888888887532    22356889999999999999999999764 4557899


Q ss_pred             EEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        177 ISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       177 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ++||+++++|.++++......+++..+..++.|++.||.|||+.+  ++||||||+||+++
T Consensus        78 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~--i~H~dlkp~nil~~  136 (256)
T cd05082          78 VTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEANN--FVHRDLAARNVLVS  136 (256)
T ss_pred             EEECCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC--EeccccchheEEEc
Confidence            999999999999998765445899999999999999999999999  99999999999986

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=99.91  E-value=1.8e-24  Score=175.04  Aligned_cols=130  Identities=19%  Similarity=0.307  Sum_probs=111.7

Q ss_pred             CCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCC-----ceE
Q psy12580        103 DLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP-----DLV  175 (239)
Q Consensus       103 ~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~-----~~~  175 (239)
                      +|+..+.||+|+||.||++..  .+..+++|.+..........+.+.+|+.+++.++||||+++++++...+     ..+
T Consensus         1 ~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~   80 (372)
T cd07853           1 DVEPDRPIGYGAFGVVWSVTDPRDGKRVALKKMPNVFQNLVSCKRVFRELKMLCFFKHDNVLSALDILQPPHIDPFEEIY   80 (372)
T ss_pred             CCcccceeeeCCCEEEEEEEECCCCCEEEEEeccccccchHHHHHHHHHHHHHHhCCCCCcCCHhheecCCCccccceEE
Confidence            467788999999999999985  4577888887544333344567889999999999999999999998776     789


Q ss_pred             EEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        176 VISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       176 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +|+||+. ++|.+++....  .+++..+..++.|++.||.|||+.+  |+||||||+|||++
T Consensus        81 lv~e~~~-~~l~~~~~~~~--~l~~~~~~~~~~qi~~aL~~LH~~~--ivH~dlkp~Nili~  137 (372)
T cd07853          81 VVTELMQ-SDLHKIIVSPQ--PLSSDHVKVFLYQILRGLKYLHSAG--ILHRDIKPGNLLVN  137 (372)
T ss_pred             EEeeccc-cCHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHhCC--eeCCCCChHHEEEC
Confidence            9999996 58988887655  6899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=99.91  E-value=1.9e-24  Score=171.70  Aligned_cols=126  Identities=18%  Similarity=0.274  Sum_probs=105.8

Q ss_pred             ccccCCCCCCceeecc--CCCceeeeeeeeccCC-chHHHHHHHHHh-HhhhcCCCceeeeeeeeeCCCceEEEEeeCCC
Q psy12580        108 TKISSGPNGDTWRGRW--QKNDIVAKILAVRNCT-PRVSRDFNEEFP-KLRIFSHPNVLPVIGCVNSPPDLVVISQYMAW  183 (239)
Q Consensus       108 ~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~-~~~~~~~~~e~~-~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~~~  183 (239)
                      +.||+|+||.||+|..  .+..+++|++...... ......+..|.. +++.++||||+++++.+...+..++||||+++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~~~~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~   80 (323)
T cd05575           1 KVIGKGSFGKVLLAKHKADGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTADKLYFVLDYVNG   80 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhhCCCCCCCCeeEEEEeCCEEEEEEcCCCC
Confidence            3689999999999987  4567888888654321 222344555554 45778999999999999999999999999999


Q ss_pred             CCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        184 GSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       184 gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |+|..++....  .+++..+..++.||+.||.|||+.|  |+||||||+|||++
T Consensus        81 g~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~~g--ivH~dikp~NIll~  130 (323)
T cd05575          81 GELFFHLQRER--SFPEPRARFYAAEIASALGYLHSLN--IIYRDLKPENILLD  130 (323)
T ss_pred             CCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCC--eEeCCCCHHHeEEC
Confidence            99999998765  6899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=99.91  E-value=2.4e-24  Score=171.31  Aligned_cols=126  Identities=16%  Similarity=0.187  Sum_probs=108.7

Q ss_pred             ccccCCCCCCceeecc--CCCceeeeeeeeccCC-chHHHHHHHHHhHhhhc-CCCceeeeeeeeeCCCceEEEEeeCCC
Q psy12580        108 TKISSGPNGDTWRGRW--QKNDIVAKILAVRNCT-PRVSRDFNEEFPKLRIF-SHPNVLPVIGCVNSPPDLVVISQYMAW  183 (239)
Q Consensus       108 ~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~-~~~~~~~~~e~~~l~~l-~h~~iv~l~~~~~~~~~~~lv~e~~~~  183 (239)
                      +.||+|+||.||++..  .+..+++|++...... ....+.+..|..++.++ .||+|+++++++...+.+++||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   80 (327)
T cd05617           1 RVIGRGSYAKVLLVRLKKNDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFLVGLHSCFQTTSRLFLVIEYVNG   80 (327)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhhcCCCCEeeEEEEEEeCCEEEEEEeCCCC
Confidence            3689999999999986  3456777888654322 23345678899998888 699999999999999999999999999


Q ss_pred             CCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        184 GSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       184 gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |+|..++....  .+++..+..++.|++.||+|||+.+  |+||||||+|||++
T Consensus        81 ~~L~~~~~~~~--~l~~~~~~~~~~qi~~al~~lH~~~--ivHrDlkp~Nili~  130 (327)
T cd05617          81 GDLMFHMQRQR--KLPEEHARFYAAEICIALNFLHERG--IIYRDLKLDNVLLD  130 (327)
T ss_pred             CcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCC--eeccCCCHHHEEEe
Confidence            99999988765  6999999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=99.91  E-value=2.4e-24  Score=171.10  Aligned_cols=131  Identities=20%  Similarity=0.219  Sum_probs=110.7

Q ss_pred             CCcccccccCCCCCCceeeccC--CCceeeeeeeeccCC-chHHHHHHHHHhHhhhc-CCCceeeeeeeeeCCCceEEEE
Q psy12580        103 DLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCT-PRVSRDFNEEFPKLRIF-SHPNVLPVIGCVNSPPDLVVIS  178 (239)
Q Consensus       103 ~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~-~~~~~~~~~e~~~l~~l-~h~~iv~l~~~~~~~~~~~lv~  178 (239)
                      +|.+.+.||+|+||.||+|...  +..+++|++...... .........|..++..+ .|++|+++++++...+.+++||
T Consensus         1 df~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (323)
T cd05616           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALSGKPPFLTQLHSCFQTMDRLYFVM   80 (323)
T ss_pred             CceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCeEeeEEEEEecCCEEEEEE
Confidence            4678889999999999999874  356778888654321 22234566777888777 5789999999999999999999


Q ss_pred             eeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        179 QYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       179 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||+++|+|.+++....  .+++..+..++.|++.||+|||+.+  |+||||||+|||++
T Consensus        81 E~~~~g~L~~~~~~~~--~~~~~~~~~~~~qi~~aL~~LH~~~--ivHrDlkp~Nill~  135 (323)
T cd05616          81 EYVNGGDLMYQIQQVG--RFKEPHAVFYAAEIAIGLFFLHSKG--IIYRDLKLDNVMLD  135 (323)
T ss_pred             cCCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCC--EEecCCCHHHeEEC
Confidence            9999999999998765  6899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=99.91  E-value=3.5e-24  Score=167.64  Aligned_cols=132  Identities=19%  Similarity=0.271  Sum_probs=107.2

Q ss_pred             CCcccccccCCCCCCceeeccC---CCceeeeeeeeccCCchHHHHHHHHHhHhhhc---CCCceeeeeeeee-----CC
Q psy12580        103 DLSLHTKISSGPNGDTWRGRWQ---KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIF---SHPNVLPVIGCVN-----SP  171 (239)
Q Consensus       103 ~~~~~~~ig~g~~g~v~~~~~~---~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l---~h~~iv~l~~~~~-----~~  171 (239)
                      +|.+.+.||+|+||.||+|...   +..+++|.+............+.+|+.+++.+   .||||+++++++.     ..
T Consensus         2 ~Y~~~~~lg~G~~g~Vy~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~hpniv~~~~~~~~~~~~~~   81 (290)
T cd07862           2 QYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRE   81 (290)
T ss_pred             CcceeeEeccCCCeEEEEEEEcCCCCeEEEEEEEecccCCCCchHHHHHHHHHHHhhcccCCCCcceEEEEEecccCCCC
Confidence            5778889999999999999762   35577787765443333334556677777665   6999999999885     23


Q ss_pred             CceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        172 PDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       172 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ..+++||||+. ++|.+++.......+++..+..++.|++.||.|||+.+  |+||||||+|||++
T Consensus        82 ~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~--iiH~dlkp~Nil~~  144 (290)
T cd07862          82 TKLTLVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHR--VVHRDLKPQNILVT  144 (290)
T ss_pred             CcEEEEEccCC-CCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCC--eeeCCCCHHHEEEc
Confidence            46899999996 59999998755456899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.91  E-value=2.7e-24  Score=165.40  Aligned_cols=123  Identities=19%  Similarity=0.361  Sum_probs=104.1

Q ss_pred             ccccCCCCCCceeeccCCCc------------eeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceE
Q psy12580        108 TKISSGPNGDTWRGRWQKND------------IVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLV  175 (239)
Q Consensus       108 ~~ig~g~~g~v~~~~~~~~~------------~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~  175 (239)
                      +.||+|+||.||+|...+..            +++|.+....   .....+.+|+.+++.++||||+++++++.. +..+
T Consensus         1 ~~lg~G~~~~v~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~---~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~   76 (259)
T cd05037           1 EHLGQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDH---RDSLAFFETASLMSQLSHKHLVKLYGVCVR-DENI   76 (259)
T ss_pred             CcccccccceEEEEEEeccCCccccCCccceeeeeeccccch---hhHHHHHHHHHHHHcCCCcchhheeeEEec-CCcE
Confidence            36899999999999985433            3445443222   114678899999999999999999999987 7789


Q ss_pred             EEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        176 VISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       176 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +||||+++|+|.+++..... .+++..+..++.|++.||.|||+.+  |+||||||+|||++
T Consensus        77 lv~e~~~~~~L~~~l~~~~~-~~~~~~~~~~~~~i~~~l~~LH~~~--i~H~dlkp~Nill~  135 (259)
T cd05037          77 MVEEYVKFGPLDVFLHREKN-NVSLHWKLDVAKQLASALHYLEDKK--LVHGNVCGKNILVA  135 (259)
T ss_pred             EEEEcCCCCcHHHHHHhhcc-CCCHHHHHHHHHHHHHHHHHHhhCC--eecccCccceEEEe
Confidence            99999999999999987553 5899999999999999999999999  99999999999986

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=99.91  E-value=1.9e-24  Score=171.68  Aligned_cols=130  Identities=18%  Similarity=0.204  Sum_probs=110.3

Q ss_pred             CcccccccCCCCCCceeecc--CCCceeeeeeeeccC-CchHHHHHHHHHhHhhhcC-CCceeeeeeeeeCCCceEEEEe
Q psy12580        104 LSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNC-TPRVSRDFNEEFPKLRIFS-HPNVLPVIGCVNSPPDLVVISQ  179 (239)
Q Consensus       104 ~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~-~~~~~~~~~~e~~~l~~l~-h~~iv~l~~~~~~~~~~~lv~e  179 (239)
                      |+..+.||+|+||.||++..  .+..+++|++..... .......+..|..++..+. |++|+++++++...+.+++|||
T Consensus         2 f~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E   81 (323)
T cd05615           2 FNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKPPFLTQLHSCFQTVDRLYFVME   81 (323)
T ss_pred             ceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCchhheeeEEecCCEEEEEEc
Confidence            56778999999999999987  356788888865422 2223355777888888875 5778889999999899999999


Q ss_pred             eCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       180 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |+++|+|.+++....  .+++..+..++.|++.||.|||+.+  |+||||||+|||++
T Consensus        82 y~~~g~L~~~i~~~~--~l~~~~~~~i~~qi~~al~~lH~~~--ivHrDikp~Nill~  135 (323)
T cd05615          82 YVNGGDLMYHIQQVG--KFKEPQAVFYAAEISVGLFFLHRRG--IIYRDLKLDNVMLD  135 (323)
T ss_pred             CCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCC--eeccCCCHHHeEEC
Confidence            999999999998765  6899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=99.91  E-value=1.9e-24  Score=171.06  Aligned_cols=126  Identities=17%  Similarity=0.201  Sum_probs=106.8

Q ss_pred             ccccCCCCCCceeeccC--CCceeeeeeeeccCC-chHHHHHHHHHhHhhhc-CCCceeeeeeeeeCCCceEEEEeeCCC
Q psy12580        108 TKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCT-PRVSRDFNEEFPKLRIF-SHPNVLPVIGCVNSPPDLVVISQYMAW  183 (239)
Q Consensus       108 ~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~-~~~~~~~~~e~~~l~~l-~h~~iv~l~~~~~~~~~~~lv~e~~~~  183 (239)
                      +.||+|+||.||++...  +..+++|.+...... .........|..++... .||+|+++++++...+..++||||+.+
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~~~   80 (316)
T cd05620           1 KVLGKGSFGKVLLAELKGKGEYFAVKALKKDVVLIDDDVECTMVEKRVLALAWENPFLTHLYCTFQTKEHLFFVMEFLNG   80 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCCccCeeEEEEeCCEEEEEECCCCC
Confidence            36899999999999874  456788888654321 22334566777777765 899999999999999999999999999


Q ss_pred             CCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        184 GSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       184 gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |+|.+++....  .+++..+..++.|++.||+|||+.+  |+||||||+|||++
T Consensus        81 g~L~~~i~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~--ivHrDlkp~Nil~~  130 (316)
T cd05620          81 GDLMFHIQDKG--RFDLYRATFYAAEIVCGLQFLHSKG--IIYRDLKLDNVMLD  130 (316)
T ss_pred             CcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCC--eEecCCCHHHeEEC
Confidence            99999998765  6899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=99.91  E-value=5.5e-24  Score=163.98  Aligned_cols=135  Identities=24%  Similarity=0.482  Sum_probs=117.7

Q ss_pred             CCCCCCCcccccccCCCCCCceeeccCC-CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEE
Q psy12580         98 GISLNDLSLHTKISSGPNGDTWRGRWQK-NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVV  176 (239)
Q Consensus        98 ~~~~~~~~~~~~ig~g~~g~v~~~~~~~-~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~l  176 (239)
                      ++..++|.+.+.||+|++|.||++..++ ..+++|.+.....   ....+.+|+.+++.++|+||+++++++......++
T Consensus         2 ~~~~~~~~i~~~ig~g~~~~v~~~~~~~~~~~~vK~~~~~~~---~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   78 (261)
T cd05034           2 EIPRESLKLERKLGAGQFGEVWMGTWNGTTKVAVKTLKPGTM---SPEAFLQEAQIMKKLRHDKLVQLYAVCSEEEPIYI   78 (261)
T ss_pred             ccchhheeeeeeeccCcceEEEEEEEcCCceEEEEEecCCcc---CHHHHHHHHHHHhhCCCCCEeeeeeeeecCCceEE
Confidence            3566788999999999999999998754 4566677654332   23568899999999999999999999998889999


Q ss_pred             EEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        177 ISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       177 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +|||+++++|.+++....+..+++..+..++.|++.||.|||+.+  ++|+||||+||+++
T Consensus        79 v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~i~~al~~lh~~~--i~h~di~p~nili~  137 (261)
T cd05034          79 VTEYMSKGSLLDFLKSGEGKKLRLPQLVDMAAQIAEGMAYLESRN--YIHRDLAARNILVG  137 (261)
T ss_pred             EEeccCCCCHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhCC--cccCCcchheEEEc
Confidence            999999999999998765557899999999999999999999999  99999999999986

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=99.91  E-value=4.2e-24  Score=169.21  Aligned_cols=134  Identities=21%  Similarity=0.411  Sum_probs=112.7

Q ss_pred             CCCCCCcccccccCCCCCCceeeccC--CC----ceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCC
Q psy12580         99 ISLNDLSLHTKISSGPNGDTWRGRWQ--KN----DIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP  172 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g~~g~v~~~~~~--~~----~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~  172 (239)
                      +...+|+..+.||+|+||.||+|.+.  +.    .+++|.+... ......+.+..|+.+++.+.||||+++++++... 
T Consensus         4 ~~~~~f~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~~e~~~l~~l~h~niv~~~g~~~~~-   81 (316)
T cd05108           4 LKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREA-TSPKANKEILDEAYVMASVDNPHVCRLLGICLTS-   81 (316)
T ss_pred             cchhhceeeeeeecCCCceEEEEEEecCCCccceeEEEEecccc-CCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEcCC-
Confidence            45577889999999999999999863  22    2566776432 2334456788999999999999999999999765 


Q ss_pred             ceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        173 DLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       173 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ..++++||+.+|+|.+++..... .+++..+..++.||+.||+|||+.+  |+||||||+|||++
T Consensus        82 ~~~~v~e~~~~g~l~~~l~~~~~-~~~~~~~~~~~~qi~~~L~~LH~~~--iiH~dlkp~Nill~  143 (316)
T cd05108          82 TVQLITQLMPFGCLLDYVREHKD-NIGSQYLLNWCVQIAKGMNYLEERR--LVHRDLAARNVLVK  143 (316)
T ss_pred             CceeeeecCCCCCHHHHHHhccc-cCCHHHHHHHHHHHHHHHHHHHhcC--eeccccchhheEec
Confidence            47799999999999999987542 5889999999999999999999999  99999999999986

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>PHA03212 serine/threonine kinase US3; Provisional

Probab=99.91  E-value=3e-24  Score=174.27  Aligned_cols=127  Identities=18%  Similarity=0.265  Sum_probs=110.5

Q ss_pred             CCCCCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceE
Q psy12580         98 GISLNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLV  175 (239)
Q Consensus        98 ~~~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~  175 (239)
                      .+....|.+.+.||+|+||.||++..  .++.+++|...        ...+.+|+.+++.++||||+++++++......+
T Consensus        88 ~~~~~~y~~~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~--------~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~  159 (391)
T PHA03212         88 GIEKAGFSILETFTPGAEGFAFACIDNKTCEHVVIKAGQ--------RGGTATEAHILRAINHPSIIQLKGTFTYNKFTC  159 (391)
T ss_pred             ccccCCcEEEEEEcCCCCeEEEEEEECCCCCEEEEechh--------hhhhHHHHHHHHhCCCCCCCCEeEEEEECCeeE
Confidence            35567799999999999999999987  34566666532        134678999999999999999999999899999


Q ss_pred             EEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        176 VISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       176 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +|+|++. ++|..++....  .+++..++.++.|++.||.|||+.+  ||||||||+|||++
T Consensus       160 lv~e~~~-~~L~~~l~~~~--~l~~~~~~~i~~qi~~aL~ylH~~~--IvHrDiKP~NIll~  216 (391)
T PHA03212        160 LILPRYK-TDLYCYLAAKR--NIAICDILAIERSVLRAIQYLHENR--IIHRDIKAENIFIN  216 (391)
T ss_pred             EEEecCC-CCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCC--cccCCCChHhEEEc
Confidence            9999995 69999987765  6899999999999999999999999  99999999999986

>KOG1095|consensus

Probab=99.91  E-value=2.8e-24  Score=185.12  Aligned_cols=139  Identities=24%  Similarity=0.427  Sum_probs=121.0

Q ss_pred             ccCCCCCCCcccccccCCCCCCceeeccCC--C---c--eeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeee
Q psy12580         96 HKGISLNDLSLHTKISSGPNGDTWRGRWQK--N---D--IVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCV  168 (239)
Q Consensus        96 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~--~---~--~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~  168 (239)
                      .+.++...+.+...||+|.||.||.|.+.+  +   +  +++|.+.. ..+.+...+|.+|..+|+.++|||||+++|++
T Consensus       686 lp~v~~~~v~l~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~-~~~~~~~~~Fl~Ea~~m~~f~HpNiv~liGv~  764 (1025)
T KOG1095|consen  686 LPEVPRKNVTLLRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKR-LSSEQEVSDFLKEALLMSKFDHPNIVSLIGVC  764 (1025)
T ss_pred             cccCChhheEeeeeeccccccceEEEEEecCCCCccceEEEEEeccc-cCCHHHHHHHHHHHHHHhcCCCcceeeEEEee
Confidence            455778889999999999999999999833  2   2  45555543 34566678899999999999999999999999


Q ss_pred             eCCCceEEEEeeCCCCCHHHHhhcCC-----CcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        169 NSPPDLVVISQYMAWGSLYALLHEGA-----GIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       169 ~~~~~~~lv~e~~~~gsL~~~l~~~~-----~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ......+|++|||++|+|.+||++..     ...++..+.+.++.|||+|+.||++++  .|||||..+|+||+
T Consensus       765 l~~~~~~i~leyM~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a~dvA~G~~YLe~~~--fvHRDLAaRNCLL~  836 (1025)
T KOG1095|consen  765 LDSGPPLILLEYMEGGDLLSFLRESRPAPFQPSNLSMRDLLAFALDVAKGMNYLESKH--FVHRDLAARNCLLD  836 (1025)
T ss_pred             cCCCCcEEEehhcccCcHHHHHHhcccccCCCCCCCHHHHHHHHHHHhhhhHHHHhCC--CcCcchhhhheeec
Confidence            99999999999999999999999751     246889999999999999999999999  99999999999997

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=99.91  E-value=7.4e-24  Score=163.24  Aligned_cols=134  Identities=25%  Similarity=0.502  Sum_probs=113.9

Q ss_pred             CCCCCCCcccccccCCCCCCceeeccCC-CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEE
Q psy12580         98 GISLNDLSLHTKISSGPNGDTWRGRWQK-NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVV  176 (239)
Q Consensus        98 ~~~~~~~~~~~~ig~g~~g~v~~~~~~~-~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~l  176 (239)
                      .+..++|++.+.+|+|++|.||++...+ ..+++|.+......   .+.+.+|+.++++++|++++++++++.. ...++
T Consensus         2 ~~~~~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~k~~~~~~~~---~~~~~~E~~~l~~l~~~~i~~~~~~~~~-~~~~l   77 (260)
T cd05070           2 EIPRESLQLIKKLGNGQFGEVWMGTWNGNTKVAVKTLKPGTMS---PESFLEEAQIMKKLRHDKLVQLYAVVSE-EPIYI   77 (260)
T ss_pred             CCchHHhhhhheeccccCceEEEEEecCCceeEEEEecCCCCC---HHHHHHHHHHHHhcCCCceEEEEeEECC-CCcEE
Confidence            3456778899999999999999998754 45666776543322   3568899999999999999999998854 46889


Q ss_pred             EEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        177 ISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       177 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +|||+++++|.+++.......+++..+..++.|++.||.|||+.+  |+||||||+||+++
T Consensus        78 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~--i~H~di~p~Nili~  136 (260)
T cd05070          78 VTEYMSKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIERMN--YIHRDLRSANILVG  136 (260)
T ss_pred             EEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCccceEEEe
Confidence            999999999999998755446899999999999999999999999  99999999999986

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=99.91  E-value=5.6e-24  Score=164.73  Aligned_cols=133  Identities=25%  Similarity=0.449  Sum_probs=114.6

Q ss_pred             CCCCcccccccCCCCCCceeeccCC--C---ceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceE
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRWQK--N---DIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLV  175 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~~~--~---~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~  175 (239)
                      ..++++.+.+|+|+||.||+|....  .   .+++|.+... ........+..|+.+++.+.||||+++++++......+
T Consensus         3 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~   81 (269)
T cd05065           3 VSCVKIEEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSG-YTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSRPVM   81 (269)
T ss_pred             hHHeEEEeEecCCCCCeEEEEEEecCCCCceeEEEEEcCCC-CCHHHHHHHHHHHHHHHhCCCcCcceEEEEECCCCceE
Confidence            4567888999999999999998732  2   3677776543 23444567899999999999999999999999999999


Q ss_pred             EEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        176 VISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       176 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +||||+++|+|.++++...+ .+++.+++.++.|++.||.|||+.+  ++|+||||+||+++
T Consensus        82 lv~e~~~~~~L~~~l~~~~~-~~~~~~~~~i~~~l~~al~~lH~~g--~~H~dl~p~nili~  140 (269)
T cd05065          82 IITEFMENGALDSFLRQNDG-QFTVIQLVGMLRGIAAGMKYLSEMN--YVHRDLAARNILVN  140 (269)
T ss_pred             EEEecCCCCcHHHHHhhCCC-CCCHHHHHHHHHHHHHHHHHHHHCC--EeecccChheEEEc
Confidence            99999999999999987543 5899999999999999999999999  99999999999985

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=99.91  E-value=6.5e-24  Score=165.49  Aligned_cols=136  Identities=23%  Similarity=0.449  Sum_probs=114.5

Q ss_pred             CCCCCCcccccccCCCCCCceeeccCC-------CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCC
Q psy12580         99 ISLNDLSLHTKISSGPNGDTWRGRWQK-------NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSP  171 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g~~g~v~~~~~~~-------~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~  171 (239)
                      +..+++++.+.||+|+||.||+|...+       ..+++|.+... ........+.+|+.++..++||||+++++++...
T Consensus         2 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~-~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~   80 (283)
T cd05048           2 IPLSAVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKEN-AEPKVQQEFRQEAELMSDLQHPNIVCLLGVCTKE   80 (283)
T ss_pred             CChHHcchhhcccCccCCcEEEEEEecCCCCcceeeEEEEecccC-CCHHHHHHHHHHHHHHHhcCCcccceEEEEEcCC
Confidence            344678899999999999999998643       23566766533 2333456788999999999999999999999988


Q ss_pred             CceEEEEeeCCCCCHHHHhhcCCC--------------cccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        172 PDLVVISQYMAWGSLYALLHEGAG--------------IVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       172 ~~~~lv~e~~~~gsL~~~l~~~~~--------------~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ...+++|||+++|+|.+++.....              ..+++..+..++.|++.||.|||+.+  ++||||||+||+++
T Consensus        81 ~~~~~~~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~al~~lH~~~--i~H~dlkp~Nil~~  158 (283)
T cd05048          81 QPTCMLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAAGMEYLSSHH--FVHRDLAARNCLVG  158 (283)
T ss_pred             CceEEEEecCCCCcHHHHHHhcCCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCC--eeccccccceEEEc
Confidence            899999999999999999976421              35788999999999999999999999  99999999999986

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>KOG0599|consensus

Probab=99.91  E-value=7.4e-25  Score=161.37  Aligned_cols=133  Identities=17%  Similarity=0.298  Sum_probs=114.9

Q ss_pred             CCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCC-----c-hHHHHHHHHHhHhhhc-CCCceeeeeeeeeCC
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCT-----P-RVSRDFNEEFPKLRIF-SHPNVLPVIGCVNSP  171 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~-----~-~~~~~~~~e~~~l~~l-~h~~iv~l~~~~~~~  171 (239)
                      +..|...+.+|.|..+.|.++..  .+++.++|++......     . ...+.-..|+.+|+++ .||+|+++.++|.++
T Consensus        16 y~~y~pkeilgrgvss~vrRci~k~t~~e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILRqv~GHP~II~l~D~yes~   95 (411)
T KOG0599|consen   16 YAKYEPKEILGRGVSSVVRRCIHKETGKEFAVKIIDVTATTESGETPYEMREATRQEISILRQVMGHPYIIDLQDVYESD   95 (411)
T ss_pred             HhhcChHHHhcccchhhhhhhhhcccccceeEEEEEecccccCCccHHHHHHHHHHHHHHHHHhcCCCcEEEeeeeccCc
Confidence            45677788999999998888876  4578888888654221     1 1234457799999998 799999999999999


Q ss_pred             CceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        172 PDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       172 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ..+++|+|.|+.|.|++||...-  .++++...++++|+.+|++|||..+  ||||||||+|||+|
T Consensus        96 sF~FlVFdl~prGELFDyLts~V--tlSEK~tR~iMrqlfegVeylHa~~--IVHRDLKpENILld  157 (411)
T KOG0599|consen   96 AFVFLVFDLMPRGELFDYLTSKV--TLSEKETRRIMRQLFEGVEYLHARN--IVHRDLKPENILLD  157 (411)
T ss_pred             chhhhhhhhcccchHHHHhhhhe--eecHHHHHHHHHHHHHHHHHHHHhh--hhhcccChhheeec
Confidence            99999999999999999999877  7999999999999999999999999  99999999999987

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=99.91  E-value=2.8e-24  Score=170.86  Aligned_cols=126  Identities=19%  Similarity=0.283  Sum_probs=104.2

Q ss_pred             ccccCCCCCCceeeccC--CCceeeeeeeeccCC-chHHHHHHHHHh-HhhhcCCCceeeeeeeeeCCCceEEEEeeCCC
Q psy12580        108 TKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCT-PRVSRDFNEEFP-KLRIFSHPNVLPVIGCVNSPPDLVVISQYMAW  183 (239)
Q Consensus       108 ~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~-~~~~~~~~~e~~-~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~~~  183 (239)
                      +.||+|+||.||++...  +..+++|++...... ......+..|.. +++.+.||||+++++++...+..++||||+++
T Consensus         1 ~~lg~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~Iv~~~~~~~~~~~~~lv~e~~~~   80 (325)
T cd05602           1 KVIGKGSFGKVLLARHKAEEKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFVLDYING   80 (325)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCceeEEEEcCCeEEEEEeCCCC
Confidence            36899999999999874  355777888654321 122234444444 46778999999999999999999999999999


Q ss_pred             CCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        184 GSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       184 gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |+|.+++....  .+++..+..++.||++||+|||+.|  |+||||||+|||++
T Consensus        81 ~~L~~~~~~~~--~~~~~~~~~~~~qi~~~L~~lH~~g--iiHrDlkp~Nili~  130 (325)
T cd05602          81 GELFYHLQRER--CFLEPRARFYAAEIASALGYLHSLN--IVYRDLKPENILLD  130 (325)
T ss_pred             CcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCC--eEecCCCHHHeEEC
Confidence            99999998765  6889999999999999999999999  99999999999985

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=99.91  E-value=5.8e-24  Score=167.79  Aligned_cols=130  Identities=16%  Similarity=0.268  Sum_probs=111.5

Q ss_pred             CCcccccccCCCCCCceeeccCC--CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEee
Q psy12580        103 DLSLHTKISSGPNGDTWRGRWQK--NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQY  180 (239)
Q Consensus       103 ~~~~~~~ig~g~~g~v~~~~~~~--~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~  180 (239)
                      +|++.+.||+|+||.||++....  ..+++|.+... ........+.+|+.++.+++||||+++++++..++..++||||
T Consensus         2 ~~~~~~~lg~G~~g~v~~~~~~~~~~~~a~k~~~~~-~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ey   80 (308)
T cd06615           2 DFEKLGELGAGNGGVVTKVLHRPSGLIMARKLIHLE-IKPAIRNQIIRELKVLHECNSPYIVGFYGAFYSDGEISICMEH   80 (308)
T ss_pred             CceEEeeccCCCCeEEEEEEEcCCCeEEEEEEeccc-cCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCEEEEEeec
Confidence            57888999999999999998743  33444555432 2233446688999999999999999999999999999999999


Q ss_pred             CCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhc-CCCCcccCCCCCccceee
Q psy12580        181 MAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS-LERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       181 ~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~-~~~~ivHrdikp~Nill~  237 (239)
                      +++++|.+++....  .+++..+..++.|+++||.|||+ .+  ++||||||+|||++
T Consensus        81 ~~~~~L~~~l~~~~--~~~~~~~~~~~~~i~~~l~~lH~~~~--i~H~dl~p~nil~~  134 (308)
T cd06615          81 MDGGSLDQVLKKAG--RIPENILGKISIAVLRGLTYLREKHK--IMHRDVKPSNILVN  134 (308)
T ss_pred             cCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhhCC--EEECCCChHHEEEe
Confidence            99999999998765  68999999999999999999997 57  99999999999986

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=99.91  E-value=2.7e-24  Score=170.24  Aligned_cols=126  Identities=17%  Similarity=0.228  Sum_probs=106.5

Q ss_pred             ccccCCCCCCceeeccC--CCceeeeeeeeccC-CchHHHHHHHHHhHhhhc-CCCceeeeeeeeeCCCceEEEEeeCCC
Q psy12580        108 TKISSGPNGDTWRGRWQ--KNDIVAKILAVRNC-TPRVSRDFNEEFPKLRIF-SHPNVLPVIGCVNSPPDLVVISQYMAW  183 (239)
Q Consensus       108 ~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~-~~~~~~~~~~e~~~l~~l-~h~~iv~l~~~~~~~~~~~lv~e~~~~  183 (239)
                      +.||+|+||.||+|...  +..+++|.+..... ..........|..++... .||||+++++++...+.+++||||+++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~ey~~~   80 (316)
T cd05619           1 KMLGKGSFGKVFLAELKGTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHLYCTFQTKENLFFVMEYLNG   80 (316)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCcCcceEEEEEeCCEEEEEEeCCCC
Confidence            36899999999999874  45678888865432 122234566677777764 899999999999999999999999999


Q ss_pred             CCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        184 GSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       184 gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |+|.+++....  .+++..+..++.|++.||.|||+.+  |+||||||+|||++
T Consensus        81 g~L~~~l~~~~--~~~~~~~~~~~~qi~~al~~LH~~~--ivHrdikp~Nil~~  130 (316)
T cd05619          81 GDLMFHIQSCH--KFDLPRATFYAAEIICGLQFLHSKG--IVYRDLKLDNILLD  130 (316)
T ss_pred             CcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHhCC--eEeCCCCHHHEEEC
Confidence            99999998755  6899999999999999999999999  99999999999985

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=99.91  E-value=5.1e-24  Score=165.68  Aligned_cols=126  Identities=14%  Similarity=0.185  Sum_probs=107.2

Q ss_pred             ccCCCCCCceeeccC--CCceeeeeeeeccCCc-hHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEeeCCCCCH
Q psy12580        110 ISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTP-RVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSL  186 (239)
Q Consensus       110 ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~-~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~~~gsL  186 (239)
                      ||+|+||.||++...  +..+++|.+....... .....+..|+.++++++||||+++++++..+...++||||+++|+|
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~il~~l~hp~i~~~~~~~~~~~~~~lv~e~~~g~~L   80 (277)
T cd05607           1 LGKGGFGEVCAVQVKNTGKMYACKKLDKKRLKKKSGEKMALLEKEILEKVNSPFIVNLAYAFESKTHLCLVMSLMNGGDL   80 (277)
T ss_pred             CCCCCceEEEEEEEccCCcEEEEEEEcHHHhhcchhhHHHHHHHHHHHhcCCCcEEEEEEEEecCCeEEEEEecCCCCCH
Confidence            689999999999873  5677778775433222 2234456799999999999999999999999999999999999999


Q ss_pred             HHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        187 YALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       187 ~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .+++.......+++..+..++.|++.||+|||+.+  |+||||||+||+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~--ivH~dikp~Nili~  129 (277)
T cd05607          81 KYHIYNVGERGLEMERVIHYSAQITCGILHLHSMD--IVYRDMKPENVLLD  129 (277)
T ss_pred             HHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHCC--EEEccCChHhEEEc
Confidence            99887655456899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>KOG0694|consensus

Probab=99.91  E-value=1.1e-24  Score=177.83  Aligned_cols=135  Identities=20%  Similarity=0.318  Sum_probs=117.3

Q ss_pred             CCCCCCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCC-chHHHHHHHHHhHhhhc-CCCceeeeeeeeeCCCc
Q psy12580         98 GISLNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCT-PRVSRDFNEEFPKLRIF-SHPNVLPVIGCVNSPPD  173 (239)
Q Consensus        98 ~~~~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~-~~~~~~~~~e~~~l~~l-~h~~iv~l~~~~~~~~~  173 (239)
                      .+..+++.+.+++|+|+||+|+.+..+  +.-+|+|++++...- ....+....|.+++... +||.+++++.+|.+.++
T Consensus       364 ~~~l~~F~~l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~Il~~d~Ve~~~~EkrI~~la~~HPFL~~L~~~fQT~~~  443 (694)
T KOG0694|consen  364 PLTLDDFRLLAVLGRGSFGKVLLAELKGTNEYYAIKVLKKGDILQRDEVESLMCEKRIFELANRHPFLVNLFSCFQTKEH  443 (694)
T ss_pred             cccccceEEEEEeccCcCceEEEEEEcCCCcEEEEEEeeccceeccccHHHHHHHHHHHHHhccCCeEeecccccccCCe
Confidence            567789999999999999999999984  456788999876533 34457788899999887 59999999999999999


Q ss_pred             eEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        174 LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +++||||+.||++..+.+..   .|++..+..++..|+.||+|||+.|  ||+||||.+|||||
T Consensus       444 l~fvmey~~Ggdm~~~~~~~---~F~e~rarfyaAev~l~L~fLH~~~--IIYRDlKLdNiLLD  502 (694)
T KOG0694|consen  444 LFFVMEYVAGGDLMHHIHTD---VFSEPRARFYAAEVVLGLQFLHENG--IIYRDLKLDNLLLD  502 (694)
T ss_pred             EEEEEEecCCCcEEEEEecc---cccHHHHHHHHHHHHHHHHHHHhcC--ceeeecchhheEEc
Confidence            99999999999954443332   6999999999999999999999999  99999999999998

>KOG0607|consensus

Probab=99.91  E-value=5.4e-25  Score=165.27  Aligned_cols=124  Identities=16%  Similarity=0.238  Sum_probs=111.6

Q ss_pred             cccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhc-CCCceeeeeeeeeCCCceEEEEeeCCC
Q psy12580        107 HTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIF-SHPNVLPVIGCVNSPPDLVVISQYMAW  183 (239)
Q Consensus       107 ~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~l~~~~~~~~~~~lv~e~~~~  183 (239)
                      .+.+|+|+++.|-.+..  .+.+++||++.+..  .....+..+|+.++... .|+||++++++|++...+|||||-|.|
T Consensus        83 ~e~LGeGAyasVqtcv~i~t~~EYAVKiidKq~--gHsR~RvfREVe~f~~Cqgh~nilqLiefFEdd~~FYLVfEKm~G  160 (463)
T KOG0607|consen   83 SELLGEGAYASVQTCVSIQTGKEYAVKIIDKQP--GHSRSRVFREVETFYQCQGHKNILQLIEFFEDDTRFYLVFEKMRG  160 (463)
T ss_pred             HHHhcCccceeeeeeeeeccchhhhhhhhhcCC--chHHHHHHHHHHHHHHhcCCccHHHHHHHhcccceEEEEEecccC
Confidence            36799999999987764  78899999997763  33456788999999998 599999999999999999999999999


Q ss_pred             CCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCcccee
Q psy12580        184 GSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV  236 (239)
Q Consensus       184 gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill  236 (239)
                      |+|.+.|.++.  .|++..+.++.++|+.||+|||..|  |.|||+||+|||-
T Consensus       161 GplLshI~~~~--~F~E~EAs~vvkdia~aLdFlH~kg--IAHRDlKPENiLC  209 (463)
T KOG0607|consen  161 GPLLSHIQKRK--HFNEREASRVVKDIASALDFLHTKG--IAHRDLKPENILC  209 (463)
T ss_pred             chHHHHHHHhh--hccHHHHHHHHHHHHHHHHHHhhcC--cccccCCccceee
Confidence            99999999877  7999999999999999999999999  9999999999984

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=99.91  E-value=7.1e-24  Score=163.58  Aligned_cols=133  Identities=23%  Similarity=0.457  Sum_probs=112.6

Q ss_pred             CCCCCCcccccccCCCCCCceeeccCC-CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEE
Q psy12580         99 ISLNDLSLHTKISSGPNGDTWRGRWQK-NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVI  177 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g~~g~v~~~~~~~-~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv  177 (239)
                      +....|.+.+.+|+|+||.||+|.+.+ ..+++|.+.....   ....+.+|+.+++.++||||+++++.+.. +..++|
T Consensus         3 ~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~valK~~~~~~~---~~~~~~~E~~~l~~l~~~~i~~~~~~~~~-~~~~lv   78 (262)
T cd05071           3 IPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM---SPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIV   78 (262)
T ss_pred             CChHHeeEeeecCCCCCCcEEEEEecCCceEEEEecccCcc---CHHHHHHHHHHHHhCCCCCcceEEEEECC-CCcEEE
Confidence            455678899999999999999998754 4566677754322   23568889999999999999999998754 568999


Q ss_pred             EeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        178 SQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       178 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |||+++|+|.+++....+..+++..+..++.|++.||.|||+.+  ++||||||+||+++
T Consensus        79 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~~--i~H~dl~p~Nill~  136 (262)
T cd05071          79 TEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMN--YVHRDLRAANILVG  136 (262)
T ss_pred             EEcCCCCcHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHHCC--ccccccCcccEEEc
Confidence            99999999999998754446899999999999999999999999  99999999999986

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.91  E-value=3.4e-24  Score=184.36  Aligned_cols=133  Identities=18%  Similarity=0.321  Sum_probs=116.9

Q ss_pred             CCCCcccccccCCCCCCceeeccC--CCceeeeeeeeccC-CchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEE
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNC-TPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVI  177 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv  177 (239)
                      ..+|.+.+.||+|+||.||+|...  +..+++|++..... .......+..|+.++..++||||+++++++...+.++||
T Consensus         3 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiKvi~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lV   82 (669)
T cd05610           3 IEEFVIVKPISRGAFGKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQAERDALALSKSPFIVHLYYSLQSANNVYLV   82 (669)
T ss_pred             cCCEEEEEEEecCCCeEEEEEEECCCCcEEEEEEEehhhccCHHHHHHHHHHHHHHHhcCCCCcCeEEEEEEECCEEEEE
Confidence            356888899999999999999885  67788888865432 233446788899999999999999999999989999999


Q ss_pred             EeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        178 SQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       178 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |||+.+++|.+++....  .+++..++.++.||+.||+|||+.+  ||||||||+||||+
T Consensus        83 mEy~~g~~L~~li~~~~--~l~~~~~~~i~~qil~aL~yLH~~g--IiHrDLKP~NILl~  138 (669)
T cd05610          83 MEYLIGGDVKSLLHIYG--YFDEEMAVKYISEVALALDYLHRHG--IIHRDLKPDNMLIS  138 (669)
T ss_pred             EeCCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCC--EEeCCccHHHEEEc
Confidence            99999999999998765  6899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=99.91  E-value=4.7e-24  Score=185.14  Aligned_cols=140  Identities=15%  Similarity=0.226  Sum_probs=116.4

Q ss_pred             CCCCCCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeC--CCc
Q psy12580         98 GISLNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNS--PPD  173 (239)
Q Consensus        98 ~~~~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~--~~~  173 (239)
                      .....+|.+.+.||+|+||.||++...  +..+++|++............+..|+.++..++||||+++++++..  ...
T Consensus         9 e~~l~~YeIl~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~~~l~e~~~~~~~~EI~IL~~L~HPNIVrl~d~f~de~~~~   88 (1021)
T PTZ00266          9 ESRLNEYEVIKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLKEREKSQLVIEVNVMRELKHKNIVRYIDRFLNKANQK   88 (1021)
T ss_pred             ccccCCEEEEEEEecCCCeEEEEEEECCCCeEEEEEEEeccccCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEecCCCE
Confidence            344578899999999999999999874  3456667776655555556778999999999999999999998854  347


Q ss_pred             eEEEEeeCCCCCHHHHhhcCC--CcccCHHHHHHHHHHHHHHhhhhhcCC-----CCcccCCCCCccceee
Q psy12580        174 LVVISQYMAWGSLYALLHEGA--GIVVDFAQALRFAVDVARGMAFLHSLE-----RIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~~~--~~~~~~~~~~~~~~~i~~~l~~lH~~~-----~~ivHrdikp~Nill~  237 (239)
                      ++|||||+++|+|.++|....  ...+++..++.|+.||+.||.|||+.+     ..||||||||+||||+
T Consensus        89 lyIVMEY~~gGSL~~lL~k~~~~~g~L~E~~Il~Ia~QIL~ALaYLHs~g~~~~~k~IVHRDLKPeNILL~  159 (1021)
T PTZ00266         89 LYILMEFCDAGDLSRNIQKCYKMFGKIEEHAIVDITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLS  159 (1021)
T ss_pred             EEEEEeCCCCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCceeccCcHHHeEee
Confidence            899999999999999997521  125899999999999999999999843     2399999999999985

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=99.91  E-value=7.3e-24  Score=164.05  Aligned_cols=126  Identities=25%  Similarity=0.366  Sum_probs=103.7

Q ss_pred             cccCCCCCCceeeccCC----CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEeeCCCC
Q psy12580        109 KISSGPNGDTWRGRWQK----NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWG  184 (239)
Q Consensus       109 ~ig~g~~g~v~~~~~~~----~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~~~g  184 (239)
                      .||+|+||.||+|...+    ..+++|.+.. .........+.+|+..++.++||||+++++.+......++||||+++|
T Consensus         2 ~lg~G~fg~v~~~~~~~~~~~~~~~~k~~~~-~~~~~~~~~~~~e~~~~~~l~h~nii~~~~~~~~~~~~~lv~e~~~~g   80 (269)
T cd05042           2 EIGNGWFGKVLLGEAHRGMSKARVVVKELRA-SATPDEQLLFLQEVQPYRELNHPNVLQCLGQCIESIPYLLVLEFCPLG   80 (269)
T ss_pred             cCCccCCceEEEEEEecCCCCeEEEEeecCc-cCChHHHHHHHHHHHHHHhCCCCCcceEEEEECCCCceEEEEEeCCCC
Confidence            58999999999997532    2344454432 222333456788999999999999999999999999999999999999


Q ss_pred             CHHHHhhcCCC---cccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        185 SLYALLHEGAG---IVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       185 sL~~~l~~~~~---~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +|.+++.....   ...++..+..++.|++.||+|||+.+  |+||||||+|||++
T Consensus        81 ~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~--ivH~dlkp~Nill~  134 (269)
T cd05042          81 DLKNYLRSNRGMVAQMAQKDVLQRMACEVASGLLWLHQAD--FIHSDLALRNCQLT  134 (269)
T ss_pred             cHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHhcC--EecccccHhheEec
Confidence            99999976432   23567888999999999999999999  99999999999986

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=99.91  E-value=5e-24  Score=166.39  Aligned_cols=132  Identities=14%  Similarity=0.110  Sum_probs=112.4

Q ss_pred             CcccccccCCCCCCceeeccC--CCceeeeeeeeccCC-chHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEee
Q psy12580        104 LSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCT-PRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQY  180 (239)
Q Consensus       104 ~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~  180 (239)
                      |+..+.||+|+||.||++...  +..+++|.+...... ......+..|+.+++.++|++++++++.+...+..++||||
T Consensus         2 f~~~~~ig~G~~g~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~   81 (285)
T cd05630           2 FRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTL   81 (285)
T ss_pred             ceeeEEeecCCCeEEEEEEEcCCCceEEEEEEehhhccchHHHHHHHHHHHHHHhCCCCCeeeeeEEEecCCEEEEEEEe
Confidence            456678999999999999874  467777877544322 22234577899999999999999999999999999999999


Q ss_pred             CCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        181 MAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       181 ~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +++++|.+++.......+++..+..++.|++.||.|||+.+  |+||||||+||+++
T Consensus        82 ~~g~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~--iiH~dikp~Nil~~  136 (285)
T cd05630          82 MNGGDLKFHIYHMGEAGFEEGRAVFYAAEICCGLEDLHQER--IVYRDLKPENILLD  136 (285)
T ss_pred             cCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCC--EEeCCCCHHHEEEC
Confidence            99999999997655446899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>KOG2052|consensus

Probab=99.91  E-value=1.5e-24  Score=169.03  Aligned_cols=128  Identities=30%  Similarity=0.557  Sum_probs=111.3

Q ss_pred             CCCcccccccCCCCCCceeeccCCCceeeeeeeeccCCchHHHHHHHHHhHhhh--cCCCceeeeeeeeeCCC----ceE
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRI--FSHPNVLPVIGCVNSPP----DLV  175 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~--l~h~~iv~l~~~~~~~~----~~~  175 (239)
                      .++.+.+.||+|.||.||+|.|+|..||||++...     .++.+.+|.++++.  ++|+||+.+++.-..++    ++|
T Consensus       211 rqI~L~e~IGkGRyGEVwrG~wrGe~VAVKiF~sr-----dE~SWfrEtEIYqTvmLRHENILgFIaaD~~~~gs~TQLw  285 (513)
T KOG2052|consen  211 RQIVLQEIIGKGRFGEVWRGRWRGEDVAVKIFSSR-----DERSWFRETEIYQTVMLRHENILGFIAADNKDNGSWTQLW  285 (513)
T ss_pred             heeEEEEEecCccccceeeccccCCceEEEEeccc-----chhhhhhHHHHHHHHHhccchhhhhhhccccCCCceEEEE
Confidence            56788899999999999999999999999999654     23567788888875  59999999998775544    799


Q ss_pred             EEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhc-----CC-CCcccCCCCCccceee
Q psy12580        176 VISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS-----LE-RIIPQYQLNSRHVMVY  237 (239)
Q Consensus       176 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~-----~~-~~ivHrdikp~Nill~  237 (239)
                      ||++|-+.|||++||.+..   ++.....+++..++.||++||.     +| |.|.|||||+.|||+-
T Consensus       286 LvTdYHe~GSL~DyL~r~t---v~~~~ml~LalS~AsGLaHLH~eI~GTqgKPaIAHRDlKSKNILVK  350 (513)
T KOG2052|consen  286 LVTDYHEHGSLYDYLNRNT---VTTEGMLKLALSIASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVK  350 (513)
T ss_pred             EeeecccCCcHHHHHhhcc---CCHHHHHHHHHHHhhhHHHHHHHHhcCCCCchhhccccccccEEEc
Confidence            9999999999999999854   8999999999999999999995     33 4599999999999973

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=99.91  E-value=1.1e-23  Score=161.49  Aligned_cols=126  Identities=21%  Similarity=0.402  Sum_probs=108.9

Q ss_pred             ccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEeeCCCCC
Q psy12580        108 TKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGS  185 (239)
Q Consensus       108 ~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~~~gs  185 (239)
                      +.||+|+||.||+|..  .++.+++|..... ........+.+|+.+++.++||||+++++++......++||||+++++
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~a~k~~~~~-~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   79 (252)
T cd05084           1 ERIGRGNFGEVFSGRLRADNTPVAVKSCRET-LPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGD   79 (252)
T ss_pred             CccCcccCccEEEEEEecCCceEEEEecCcc-CCHHHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCCeEEEEeeccCCc
Confidence            3689999999999987  4566777766432 233445678899999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        186 LYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       186 L~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |.+++.... ..+++..++.++.|++.||.|||+.+  ++||||||+|||++
T Consensus        80 L~~~~~~~~-~~~~~~~~~~~~~qi~~~L~~lH~~~--i~H~dl~p~nil~~  128 (252)
T cd05084          80 FLTFLRTEG-PRLKVKELIQMVENAAAGMEYLESKH--CIHRDLAARNCLVT  128 (252)
T ss_pred             HHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHhCC--ccccccchheEEEc
Confidence            999997644 25899999999999999999999999  99999999999986

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=99.91  E-value=1.2e-23  Score=161.70  Aligned_cols=132  Identities=16%  Similarity=0.272  Sum_probs=116.1

Q ss_pred             CcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEeeC
Q psy12580        104 LSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYM  181 (239)
Q Consensus       104 ~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~  181 (239)
                      |+..+.+|+|+||.||.+..  .+..+++|.+..........+.+.+|+.++++++|+||+++++++...+..+++|||+
T Consensus         2 y~~~~~ig~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~~~e~~   81 (256)
T cd08221           2 YIPIRVLGKGAFGEATLYRRTEDDSLVVWKEVNLTRLSEKERRDALNEIVILSLLQHPNIIAYYNHFMDDNTLLIEMEYA   81 (256)
T ss_pred             ceEeeEecccCCceEEEEEEcCCCcEEEEEEEeecccchhHHHHHHHHHHHHHhCCCCCeeEEEeEEecCCeEEEEEEec
Confidence            66788999999998877665  5567777887665555555677889999999999999999999999999999999999


Q ss_pred             CCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        182 AWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       182 ~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ++|+|.+++....+..+++..+..++.|++.||.|||+.+  ++|+||||+||+++
T Consensus        82 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~--i~h~dl~p~ni~~~  135 (256)
T cd08221          82 NGGTLYDKIVRQKGQLFEEEMVLWYLFQIVSAVSYIHKAG--ILHRDIKTLNIFLT  135 (256)
T ss_pred             CCCcHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhCC--ccccCCChHhEEEe
Confidence            9999999998764446899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=99.91  E-value=5e-24  Score=184.13  Aligned_cols=134  Identities=14%  Similarity=0.182  Sum_probs=113.9

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCC-chHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEE
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCT-PRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVIS  178 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~  178 (239)
                      .+|.+.+.||+|+||.||+|..  .+..+++|.+...... ....+++.+|+.+++.++||||+++++++..++..++||
T Consensus         2 grYeIi~~LGkGgfG~VYlA~d~~tg~~VAIK~I~~~l~~~e~~~~rflrEi~ILs~L~HPNIVkl~~v~~d~~~lyLVM   81 (932)
T PRK13184          2 QRYDIIRLIGKGGMGEVYLAYDPVCSRRVALKKIREDLSENPLLKKRFLREAKIAADLIHPGIVPVYSICSDGDPVYYTM   81 (932)
T ss_pred             CCeEEEEEEecCCCEEEEEEEECCCCcEEEEEEECcccccCHHHHHHHHHHHHHHHhCCCcCcCeEEEEEeeCCEEEEEE
Confidence            4678889999999999999986  3567888888654322 334567899999999999999999999999999999999


Q ss_pred             eeCCCCCHHHHhhcCC---------CcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        179 QYMAWGSLYALLHEGA---------GIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       179 e~~~~gsL~~~l~~~~---------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||+++|+|.+++....         ...++...+..++.||++||+|||+.+  |+||||||+|||++
T Consensus        82 EY~eGGSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~AL~yLHs~G--IIHRDLKPeNILLd  147 (932)
T PRK13184         82 PYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICATIEYVHSKG--VLHRDLKPDNILLG  147 (932)
T ss_pred             EcCCCCCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHHHHHHHHHHHCC--ccccCCchheEEEc
Confidence            9999999999986421         123567788999999999999999999  99999999999986

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=99.91  E-value=5.4e-24  Score=170.37  Aligned_cols=137  Identities=23%  Similarity=0.380  Sum_probs=112.1

Q ss_pred             CCCCCCCcccccccCCCCCCceeecc-------CCCceeeeeeeeccCCchHHHHHHHHHhHhhhc-CCCceeeeeeeee
Q psy12580         98 GISLNDLSLHTKISSGPNGDTWRGRW-------QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIF-SHPNVLPVIGCVN  169 (239)
Q Consensus        98 ~~~~~~~~~~~~ig~g~~g~v~~~~~-------~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~l~~~~~  169 (239)
                      ..+.++|.+.+.||+|+||.||+|.+       .+..+++|.+.... .......+.+|+.++..+ +||||+++++++.
T Consensus         3 ~~~~~~~~~~~~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~   81 (343)
T cd05103           3 EFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGA-THSEHRALMSELKILIHIGHHLNVVNLLGACT   81 (343)
T ss_pred             ccchhHhcccccccCCccceEEEEeeccCCccccceeEEEEEeccCC-ChHHHHHHHHHHHHHHhccCCccHhhhcceee
Confidence            34556789999999999999999974       23567788875432 233346688899999999 6899999999876


Q ss_pred             CC-CceEEEEeeCCCCCHHHHhhcCCC-----------------------------------------------------
Q psy12580        170 SP-PDLVVISQYMAWGSLYALLHEGAG-----------------------------------------------------  195 (239)
Q Consensus       170 ~~-~~~~lv~e~~~~gsL~~~l~~~~~-----------------------------------------------------  195 (239)
                      .. ...+++|||+++|+|.+++.....                                                     
T Consensus        82 ~~~~~~~lv~ey~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (343)
T cd05103          82 KPGGPLMVIVEFCKFGNLSNYLRSKRGEFVPYKTKDARFRQGKSGYGDISEDLKRRLDSITSSQSSASSGFVEEKSLSDV  161 (343)
T ss_pred             cCCCceEEEEeccCCCcHHHHHHhcCCccccccccccccccccccccchhhhhhhhccccccccccccccccCCCccccc
Confidence            54 478999999999999999875321                                                     


Q ss_pred             ------------cccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        196 ------------IVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       196 ------------~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                                  ..+++..+..++.|+++||+|||+.+  |+||||||+|||++
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~--i~H~dikp~Nil~~  213 (343)
T cd05103         162 EEEEAEQEDLYKKVLTLEDLICYSFQVAKGMEFLASRK--CIHRDLAARNILLS  213 (343)
T ss_pred             hhhhhhhhhhhhccCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCccCeEEEc
Confidence                        23678888999999999999999999  99999999999986

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=99.91  E-value=8.5e-24  Score=162.66  Aligned_cols=124  Identities=19%  Similarity=0.369  Sum_probs=107.3

Q ss_pred             cccCCCCCCceeecc----CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEeeCCCC
Q psy12580        109 KISSGPNGDTWRGRW----QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWG  184 (239)
Q Consensus       109 ~ig~g~~g~v~~~~~----~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~~~g  184 (239)
                      .||+|+||.||+|.+    .+..+++|++..........+.+..|+.+++.+.||||+++++++. .+..++||||+++|
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-~~~~~lv~e~~~~~   80 (257)
T cd05116           2 ELGSGNFGTVKKGMYKMKKSEKTVAVKILKNDNNDPALKDELLREANVMQQLDNPYIVRMIGICE-AESWMLVMELAELG   80 (257)
T ss_pred             cCCCcCCcceEEeEEecCCCceEEEEEEccCCCCcHHHHHHHHHHHHHHHhCCCCCcceEEEEEc-CCCcEEEEecCCCC
Confidence            589999999999965    2456777887655444555678899999999999999999999885 44679999999999


Q ss_pred             CHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        185 SLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       185 sL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +|.+++....  .+++..+..++.|++.||+|||+.+  |+||||||+||+++
T Consensus        81 ~L~~~l~~~~--~~~~~~~~~i~~qi~~al~~lH~~~--i~H~dlkp~nill~  129 (257)
T cd05116          81 PLNKFLQKNK--HVTEKNITELVHQVSMGMKYLEETN--FVHRDLAARNVLLV  129 (257)
T ss_pred             cHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCC--EeecccchhhEEEc
Confidence            9999998755  6899999999999999999999999  99999999999986

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=99.91  E-value=3.9e-24  Score=169.51  Aligned_cols=126  Identities=18%  Similarity=0.240  Sum_probs=108.4

Q ss_pred             ccccCCCCCCceeeccC--CCceeeeeeeeccC-CchHHHHHHHHHhHhhhc-CCCceeeeeeeeeCCCceEEEEeeCCC
Q psy12580        108 TKISSGPNGDTWRGRWQ--KNDIVAKILAVRNC-TPRVSRDFNEEFPKLRIF-SHPNVLPVIGCVNSPPDLVVISQYMAW  183 (239)
Q Consensus       108 ~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~-~~~~~~~~~~e~~~l~~l-~h~~iv~l~~~~~~~~~~~lv~e~~~~  183 (239)
                      +.||+|+||.||++...  +..+++|++..... .......+..|..++..+ +||||+++++++...+.+++||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~   80 (318)
T cd05570           1 KVLGKGSFGKVLLAELKGTDELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFLTQLHSCFQTKDRLFFVMEYVNG   80 (318)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            36899999999999874  45678888865432 222345567888888877 799999999999999999999999999


Q ss_pred             CCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        184 GSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       184 gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |+|..++....  .+++..+..++.|++.||.|||+.+  |+||||||+|||++
T Consensus        81 ~~L~~~~~~~~--~l~~~~~~~~~~qi~~~l~~LH~~~--ivH~dlkp~Nill~  130 (318)
T cd05570          81 GDLMFHIQRSG--RFDEPRARFYAAEIVLGLQFLHERG--IIYRDLKLDNVLLD  130 (318)
T ss_pred             CCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHhCC--eEccCCCHHHeEEC
Confidence            99999998765  6999999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>KOG0660|consensus

Probab=99.91  E-value=1.5e-24  Score=165.07  Aligned_cols=130  Identities=16%  Similarity=0.242  Sum_probs=110.7

Q ss_pred             CCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCC-----CceE
Q psy12580        103 DLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSP-----PDLV  175 (239)
Q Consensus       103 ~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~-----~~~~  175 (239)
                      .|...+.+|+|+||.|+.+..  .+..|++|.+...-...-..++..+|+.+|+.++|+||+.+++.+..+     +.+|
T Consensus        23 ~y~~~~~iG~GAyGvVcsA~~~~t~~~VAIKKi~~~F~~~~~akRtlRElklLr~~~HeNIi~l~di~~p~~~~~f~DvY  102 (359)
T KOG0660|consen   23 YYVLIEPIGRGAYGVVCSAKDKRTGEKVAIKKILNPFENQIDAKRTLRELKLLRHLRHENIIGLLDIFRPPSRDKFNDVY  102 (359)
T ss_pred             eecccccccCcceeeEEEEEEcCCCCEeehhhhhhhhhchHHHHHHHHHHHHHHHhcCCCcceEEeecccccccccceeE
Confidence            344478899999999999876  457778877753333344457788999999999999999999988662     3799


Q ss_pred             EEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        176 VISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       176 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +|+|+|+. +|.+.++.+.  .++...+..+++|+++||+|+|+.+  |+||||||+|+|++
T Consensus       103 iV~elMet-DL~~iik~~~--~L~d~H~q~f~YQiLrgLKyiHSAn--ViHRDLKPsNll~n  159 (359)
T KOG0660|consen  103 LVFELMET-DLHQIIKSQQ--DLTDDHAQYFLYQILRGLKYIHSAN--VIHRDLKPSNLLLN  159 (359)
T ss_pred             EehhHHhh-HHHHHHHcCc--cccHHHHHHHHHHHHHhcchhhccc--ccccccchhheeec
Confidence            99999955 9999999876  6999999999999999999999999  99999999999986

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=99.91  E-value=8.3e-24  Score=164.23  Aligned_cols=135  Identities=20%  Similarity=0.330  Sum_probs=113.4

Q ss_pred             CCCCCcccccccCCCCCCceeeccC-------CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCC
Q psy12580        100 SLNDLSLHTKISSGPNGDTWRGRWQ-------KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP  172 (239)
Q Consensus       100 ~~~~~~~~~~ig~g~~g~v~~~~~~-------~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~  172 (239)
                      +.++|...+.+|+|+||.||+|...       ...+++|.+.... .....+.+.+|+.++++++||||+++++++...+
T Consensus         3 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~   81 (275)
T cd05046           3 PRSNLQEITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTK-DENLQSEFRRELDMFRKLSHKNVVRLLGLCREAE   81 (275)
T ss_pred             ChHhceeeeeecccceeEEEEEEeccCCcCCCcceEEEEccCCcc-chHHHHHHHHHHHHHHhcCCcceeeeEEEECCCC
Confidence            3467788889999999999999863       2345556654322 2224567899999999999999999999998888


Q ss_pred             ceEEEEeeCCCCCHHHHhhcCCC-------cccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        173 DLVVISQYMAWGSLYALLHEGAG-------IVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       173 ~~~lv~e~~~~gsL~~~l~~~~~-------~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ..++||||+++|+|.+++.....       ..+++..+..++.|++.||.|||+.+  |+||||||+||+++
T Consensus        82 ~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~~~--i~H~dlkp~Nili~  151 (275)
T cd05046          82 PHYMILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMDHLSNAR--FVHRDLAARNCLVS  151 (275)
T ss_pred             cceEEEEecCCCcHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHhhhcC--cccCcCccceEEEe
Confidence            99999999999999999976441       15899999999999999999999999  99999999999986

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=99.91  E-value=1e-24  Score=167.81  Aligned_cols=130  Identities=21%  Similarity=0.373  Sum_probs=112.8

Q ss_pred             CcccccccCCCCCCceeeccCC--CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEeeC
Q psy12580        104 LSLHTKISSGPNGDTWRGRWQK--NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYM  181 (239)
Q Consensus       104 ~~~~~~ig~g~~g~v~~~~~~~--~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~  181 (239)
                      |+..+.||+|+||.||++...+  ..+++|.+..............+|+.+++.++||||+++++++......++|||++
T Consensus         1 y~~~~~lg~G~~g~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~v~~~~   80 (260)
T PF00069_consen    1 YRLVKKLGSGGFGTVYKAKNKKNGQKVAVKIIDKSEIEEEEREENIREIKILRRLRHPNIVQILDVFQDDNYLYIVMEYC   80 (260)
T ss_dssp             EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTBTTBCHEEEEEEESSEEEEEEEEE
T ss_pred             CEEeEEEEeCCCEEEEEEEECCCCeEEEEEEeccccccccccchhhhhhhcccccccccccccccccccccccccccccc
Confidence            4567899999999999999854  45888888765443333334456999999999999999999999999999999999


Q ss_pred             CCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        182 AWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       182 ~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .+++|.+++....  .+++..+..++.|+++||+|||+.+  |+|+||||+||+++
T Consensus        81 ~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~L~~Lh~~~--i~H~dikp~NIl~~  132 (260)
T PF00069_consen   81 PGGSLQDYLQKNK--PLSEEEILKIAYQILEALAYLHSKG--IVHRDIKPENILLD  132 (260)
T ss_dssp             TTEBHHHHHHHHS--SBBHHHHHHHHHHHHHHHHHHHHTT--EEESSBSGGGEEES
T ss_pred             ccccccccccccc--ccccccccccccccccccccccccc--cccccccccccccc
Confidence            9999999998444  6899999999999999999999999  99999999999987

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=99.91  E-value=2.7e-24  Score=172.83  Aligned_cols=130  Identities=22%  Similarity=0.329  Sum_probs=110.9

Q ss_pred             CCCCCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEE
Q psy12580         99 ISLNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVV  176 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~l  176 (239)
                      ....+++..+.||+|+||.||++...  +..+++|++.... .......+.+|+.+++.++|+||+++++++...+.+++
T Consensus        71 ~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l  149 (353)
T PLN00034         71 KSLSELERVNRIGSGAGGTVYKVIHRPTGRLYALKVIYGNH-EDTVRRQICREIEILRDVNHPNVVKCHDMFDHNGEIQV  149 (353)
T ss_pred             CCHHHHhhhhhccCCCCeEEEEEEECCCCCEEEEEEEecCC-cHHHHHHHHHHHHHHHhCCCCCcceeeeEeccCCeEEE
Confidence            34567788899999999999999873  5678888875432 23345678899999999999999999999999999999


Q ss_pred             EEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        177 ISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       177 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||||+++|+|.+..      ..++..+..++.||+.||.|||+.+  |+||||||+|||++
T Consensus       150 v~e~~~~~~L~~~~------~~~~~~~~~i~~qi~~aL~~LH~~~--ivHrDlkp~NIll~  202 (353)
T PLN00034        150 LLEFMDGGSLEGTH------IADEQFLADVARQILSGIAYLHRRH--IVHRDIKPSNLLIN  202 (353)
T ss_pred             EEecCCCCcccccc------cCCHHHHHHHHHHHHHHHHHHHHCC--EeecCCCHHHEEEc
Confidence            99999999986432      3567788999999999999999999  99999999999986

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=99.91  E-value=8.7e-24  Score=163.48  Aligned_cols=133  Identities=26%  Similarity=0.448  Sum_probs=113.3

Q ss_pred             CCCCcccccccCCCCCCceeeccC--CC---ceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceE
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRWQ--KN---DIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLV  175 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~~--~~---~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~  175 (239)
                      ..+|++.+.+|+|+||.||+|...  +.   .+++|.+.... .....+.+..|+.++..++||||+++++++..++..+
T Consensus         3 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   81 (267)
T cd05066           3 ASCIKIEKVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGY-TEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSKPVM   81 (267)
T ss_pred             HHHeEeeeeecccCCCceEEEEEecCCCCceEEEEEECCCCC-CHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCccE
Confidence            456788899999999999999762  22   35666664332 2334567889999999999999999999999999999


Q ss_pred             EEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        176 VISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       176 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +||||+++++|.+++....+ .+++.++..++.|++.||.|||+.+  ++||||||+|||++
T Consensus        82 lv~e~~~~~~L~~~~~~~~~-~~~~~~~~~i~~~i~~~l~~lH~~~--i~h~dlkp~nili~  140 (267)
T cd05066          82 IVTEYMENGSLDAFLRKHDG-QFTVIQLVGMLRGIASGMKYLSDMG--YVHRDLAARNILVN  140 (267)
T ss_pred             EEEEcCCCCCHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHHCC--EeehhhchhcEEEC
Confidence            99999999999999987542 5899999999999999999999999  99999999999985

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=99.91  E-value=7e-24  Score=168.76  Aligned_cols=128  Identities=22%  Similarity=0.319  Sum_probs=111.2

Q ss_pred             ccccCC--CCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEeeCCC
Q psy12580        108 TKISSG--PNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAW  183 (239)
Q Consensus       108 ~~ig~g--~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~~~  183 (239)
                      ..||+|  +||.||.+..  .++.+++|++..........+.+.+|+.+++.++||||+++++++..++..++|+||+.+
T Consensus         4 ~~ig~g~~~~~~v~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~~~~~~v~e~~~~   83 (328)
T cd08226           4 VEIGRGFCNLTSVYLARHTPTGTLVTVRITDLENCTEEHLKALQNEVVLSHFFRHPNIMTSWTVFTTGSWLWVISPFMAY   83 (328)
T ss_pred             HHhCCcccCceeEEEEEEcCCCcEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceEeeeEecCCceEEEEecccC
Confidence            456666  8889999987  567888888866544444557788899999999999999999999999999999999999


Q ss_pred             CCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        184 GSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       184 gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |+|.+++.......+++..+..++.|++.||+|||+.+  |+||||||+|||++
T Consensus        84 ~~l~~~l~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~--ivHrDlkp~Nill~  135 (328)
T cd08226          84 GSANSLLKTYFPEGMSEALIGNILFGALRGLNYLHQNG--YIHRNIKASHILIS  135 (328)
T ss_pred             CCHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCCHHHEEEe
Confidence            99999998754446899999999999999999999999  99999999999986

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=99.91  E-value=5.9e-24  Score=163.81  Aligned_cols=134  Identities=27%  Similarity=0.488  Sum_probs=116.3

Q ss_pred             CCCCCcccccccCCCCCCceeeccCC-CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEE
Q psy12580        100 SLNDLSLHTKISSGPNGDTWRGRWQK-NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVIS  178 (239)
Q Consensus       100 ~~~~~~~~~~ig~g~~g~v~~~~~~~-~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~  178 (239)
                      ...+|.+.+.||+|+||.||+|.+.+ ..+++|.+....  ......+..|+.+++.++||||+++++++...+..++||
T Consensus         4 ~~~~y~~~~~ig~g~~~~vy~~~~~~~~~~~~k~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~   81 (261)
T cd05148           4 PREEFTLERKLGSGYFGEVWEGLWKNRVRVAIKILKSDD--LLKQQDFQKEVQALKRLRHKHLISLFAVCSVGEPVYIIT   81 (261)
T ss_pred             cHHHHHHhhhhccCCCccEEEeEecCCCcEEEEeccccc--hhhHHHHHHHHHHHhcCCCcchhheeeeEecCCCeEEEE
Confidence            34568889999999999999998855 556667765432  223456888999999999999999999999999999999


Q ss_pred             eeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        179 QYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       179 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||+++|+|.+++....+..+++..+..++.|++.||.|||+.+  |+||||||+||+++
T Consensus        82 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~--i~h~dl~~~nilv~  138 (261)
T cd05148          82 ELMEKGSLLAFLRSPEGQVLPVASLIDMACQVAEGMAYLEEQN--SIHRDLAARNILVG  138 (261)
T ss_pred             eecccCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHCC--eeccccCcceEEEc
Confidence            9999999999998765557899999999999999999999999  99999999999986

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=99.91  E-value=6.5e-24  Score=165.76  Aligned_cols=132  Identities=14%  Similarity=0.095  Sum_probs=112.0

Q ss_pred             CcccccccCCCCCCceeeccC--CCceeeeeeeeccCCc-hHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEee
Q psy12580        104 LSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTP-RVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQY  180 (239)
Q Consensus       104 ~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~-~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~  180 (239)
                      |...+.||+|+||.||++.+.  +..+++|.+....... .....+.+|+.+++.++|++|+++.+++...+..+++|||
T Consensus         2 ~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~   81 (285)
T cd05632           2 FRQYRVLGKGGFGEVCACQVRATGKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQFVVNLAYAYETKDALCLVLTI   81 (285)
T ss_pred             ceEEEEEecCCCeEEEEEEECCCCcEEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCcCceeEEEEEecCCEEEEEEEe
Confidence            445678999999999999873  4667778775543222 2234577899999999999999999999999999999999


Q ss_pred             CCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        181 MAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       181 ~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +.+++|.+++.......+++..+..++.|++.||.|||+.+  |+||||||+||+++
T Consensus        82 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~--iiH~dikp~Nili~  136 (285)
T cd05632          82 MNGGDLKFHIYNMGNPGFEEERALFYAAEILCGLEDLHREN--TVYRDLKPENILLD  136 (285)
T ss_pred             ccCccHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCC--eeecCCCHHHEEEC
Confidence            99999999887654446999999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=99.91  E-value=7e-24  Score=169.22  Aligned_cols=137  Identities=23%  Similarity=0.357  Sum_probs=112.6

Q ss_pred             CCCCCCCcccccccCCCCCCceeeccCC-------CceeeeeeeeccCCchHHHHHHHHHhHhhhc-CCCceeeeeeeee
Q psy12580         98 GISLNDLSLHTKISSGPNGDTWRGRWQK-------NDIVAKILAVRNCTPRVSRDFNEEFPKLRIF-SHPNVLPVIGCVN  169 (239)
Q Consensus        98 ~~~~~~~~~~~~ig~g~~g~v~~~~~~~-------~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~l~~~~~  169 (239)
                      .++.+.|++.+.||+|+||.||+|...+       +.+++|++.... .....+.+..|+.++..+ +|+||+++++++.
T Consensus         3 ~~~~~~~~i~~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~-~~~~~~~~~~E~~~~~~l~~h~niv~~~~~~~   81 (337)
T cd05054           3 EFPRDRLKLGKPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGA-TASEYKALMTELKILIHIGHHLNVVNLLGACT   81 (337)
T ss_pred             ccCHHHhhhhcccccCcCceEEeccccccccccccceeeeeeccCCC-CHHHHHHHHHHHHHHHhhccCcchhheeeeEe
Confidence            4555678999999999999999997522       457778775332 233446678899999999 7999999999886


Q ss_pred             CC-CceEEEEeeCCCCCHHHHhhcCCC-----------------------------------------------------
Q psy12580        170 SP-PDLVVISQYMAWGSLYALLHEGAG-----------------------------------------------------  195 (239)
Q Consensus       170 ~~-~~~~lv~e~~~~gsL~~~l~~~~~-----------------------------------------------------  195 (239)
                      .. ..+++++||+++|+|.+++.....                                                     
T Consensus        82 ~~~~~~~~v~ey~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (337)
T cd05054          82 KPGGPLMVIVEYCKFGNLSNYLRSKRECFSPYRNKSTRKREMKQKEGKKQRLDSVSSSQSSASSGFIEDKSLSDVEEDEE  161 (337)
T ss_pred             cCCCCEEEEEecCCCCCHHHHHHhccccccccccccccccccccccccccccccCCccccccccccccCcchhhcccchh
Confidence            54 478999999999999999864321                                                     


Q ss_pred             ------cccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        196 ------IVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       196 ------~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                            ..+++..+..++.||+.||+|||+.+  |+||||||+|||++
T Consensus       162 ~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~~--ivHrDikp~Nill~  207 (337)
T cd05054         162 GDELYKEPLTLEDLISYSFQVARGMEFLASRK--CIHRDLAARNILLS  207 (337)
T ss_pred             hhHHhhcCCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCCcceEEEe
Confidence                  25789999999999999999999999  99999999999997

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=99.91  E-value=1e-23  Score=163.89  Aligned_cols=136  Identities=20%  Similarity=0.333  Sum_probs=112.9

Q ss_pred             CCCCCCcccccccCCCCCCceeeccCC-------CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCC
Q psy12580         99 ISLNDLSLHTKISSGPNGDTWRGRWQK-------NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSP  171 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g~~g~v~~~~~~~-------~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~  171 (239)
                      +..++|++.+.+|+|+||.||+|.+.+       ..+++|.+.... .......+.+|+.+++.++||||+++++++..+
T Consensus         3 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~-~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~   81 (277)
T cd05062           3 VAREKITMSRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAA-SMRERIEFLNEASVMKEFNCHHVVRLLGVVSQG   81 (277)
T ss_pred             ccHHHceeeeeeccccCCeEEEEEeccCCCCCceeEEEEEeccccC-CHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCC
Confidence            345678889999999999999987532       346667664322 223445688999999999999999999999988


Q ss_pred             CceEEEEeeCCCCCHHHHhhcCCC--------cccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        172 PDLVVISQYMAWGSLYALLHEGAG--------IVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       172 ~~~~lv~e~~~~gsL~~~l~~~~~--------~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ...++||||+++|+|.+++.....        ..+++..+..++.|++.||.|||+.+  ++||||||+||+++
T Consensus        82 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~--~vH~dlkp~Nil~~  153 (277)
T cd05062          82 QPTLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAYLNANK--FVHRDLAARNCMVA  153 (277)
T ss_pred             CCeEEEEecCCCCCHHHHHHHcCccccccccccCCCHHHHHHHHHHHHHHHHHHHHCC--cccCCcchheEEEc
Confidence            999999999999999999975321        23577889999999999999999999  99999999999987

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=99.91  E-value=1.1e-23  Score=164.80  Aligned_cols=137  Identities=21%  Similarity=0.354  Sum_probs=112.8

Q ss_pred             CCCCCCCcccccccCCCCCCceeeccC-------CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeC
Q psy12580         98 GISLNDLSLHTKISSGPNGDTWRGRWQ-------KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNS  170 (239)
Q Consensus        98 ~~~~~~~~~~~~ig~g~~g~v~~~~~~-------~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~  170 (239)
                      ++...+|.+.+.||+|+||.||+|..+       +..+++|.+.... .......+.+|+.+++.++||||+++++++..
T Consensus         2 ~~~~~~~~i~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~   80 (288)
T cd05061           2 EVSREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESA-SLRERIEFLNEASVMKGFTCHHVVRLLGVVSK   80 (288)
T ss_pred             cccHHHceeeeeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcC-CHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcC
Confidence            455677889999999999999998643       2356667664332 22334567889999999999999999999998


Q ss_pred             CCceEEEEeeCCCCCHHHHhhcCC--------CcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        171 PPDLVVISQYMAWGSLYALLHEGA--------GIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       171 ~~~~~lv~e~~~~gsL~~~l~~~~--------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ++..++||||+++|+|.++++...        ...++...+..++.|++.||.|||+.+  |+||||||+|||++
T Consensus        81 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~--i~H~dikp~nili~  153 (288)
T cd05061          81 GQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLNAKK--FVHRDLAARNCMVA  153 (288)
T ss_pred             CCCcEEEEeCCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCC--CcCCCCChheEEEc
Confidence            899999999999999999997532        123467788999999999999999999  99999999999986

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>KOG0662|consensus

Probab=99.91  E-value=1.5e-24  Score=150.70  Aligned_cols=131  Identities=18%  Similarity=0.289  Sum_probs=114.4

Q ss_pred             CCcccccccCCCCCCceeeccCCC--ceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEee
Q psy12580        103 DLSLHTKISSGPNGDTWRGRWQKN--DIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQY  180 (239)
Q Consensus       103 ~~~~~~~ig~g~~g~v~~~~~~~~--~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~  180 (239)
                      .|...++||+|.||+||+|+..+.  .++.|.+.....+........+|+-+++.++|.|||++++.....+.+-+|+||
T Consensus         3 ~ydkmekigegtygtvfkarn~~t~eivalkrvrlddddegvpssalreicllkelkhknivrl~dvlhsdkkltlvfe~   82 (292)
T KOG0662|consen    3 KYDKMEKIGEGTYGTVFKARNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEF   82 (292)
T ss_pred             chHHHHhhcCCcceeeEecccCCccceEEEEEEeccCCCCCCcHHHHHHHHHHHHhhhcceeehhhhhccCceeEEeHHH
Confidence            466778999999999999998553  344477766665555667788999999999999999999999999999999999


Q ss_pred             CCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        181 MAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       181 ~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |.. +|..|...-.+ .++.+.++.++.|+++||.|.|+++  +.|||+||+|+||.
T Consensus        83 cdq-dlkkyfdslng-~~d~~~~rsfmlqllrgl~fchshn--vlhrdlkpqnllin  135 (292)
T KOG0662|consen   83 CDQ-DLKKYFDSLNG-DLDPEIVRSFMLQLLRGLGFCHSHN--VLHRDLKPQNLLIN  135 (292)
T ss_pred             hhH-HHHHHHHhcCC-cCCHHHHHHHHHHHHhhhhhhhhhh--hhhccCCcceEEec
Confidence            977 99999987654 5899999999999999999999999  99999999999984

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=99.91  E-value=1.2e-23  Score=163.04  Aligned_cols=131  Identities=27%  Similarity=0.452  Sum_probs=107.5

Q ss_pred             cccccccCCCCCCceeeccCCC----ceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCC------Cce
Q psy12580        105 SLHTKISSGPNGDTWRGRWQKN----DIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSP------PDL  174 (239)
Q Consensus       105 ~~~~~ig~g~~g~v~~~~~~~~----~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~------~~~  174 (239)
                      .+.+.||+|+||.||+|.+...    .+++|.+..........+.+..|..+++.++||||+++++.+...      ...
T Consensus         2 ~i~~~ig~G~~g~V~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~   81 (272)
T cd05075           2 ALGKTLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTRSEMEDFLSEAVCMKEFDHPNVMRLIGVCLQTVESEGYPSP   81 (272)
T ss_pred             ccccccCcccCceEEEeEEccCCCeeeEEEEecccCcCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEccCCcccCCCCc
Confidence            4668899999999999987442    356677655444455567788999999999999999999977432      257


Q ss_pred             EEEEeeCCCCCHHHHhhcC----CCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        175 VVISQYMAWGSLYALLHEG----AGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       175 ~lv~e~~~~gsL~~~l~~~----~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +++|||+.+|+|.+++...    ....+++..+..++.|++.||+|||+.+  |+||||||+|||++
T Consensus        82 ~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~--i~H~dlkp~Nil~~  146 (272)
T cd05075          82 VVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASGMEYLSSKS--FIHRDLAARNCMLN  146 (272)
T ss_pred             EEEEEeCCCCcHHHHHHHhcccCCcccCCHHHHHHHHHHHHHHHHHHHHCC--eeccccchhheEEc
Confidence            8999999999999988431    1235889999999999999999999999  99999999999986

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=99.91  E-value=8.4e-24  Score=162.42  Aligned_cols=133  Identities=17%  Similarity=0.273  Sum_probs=117.4

Q ss_pred             CCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEee
Q psy12580        103 DLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQY  180 (239)
Q Consensus       103 ~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~  180 (239)
                      +|+..+.||+|++|.||++..  .+..+++|.+............+..|+.+++.++|||++++++.+...+..++|+||
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~   80 (256)
T cd08220           1 KYEKIRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPNIIEYYENFLEDKALMIVMEY   80 (256)
T ss_pred             CceEEEEecccCceEEEEEEEcCCCcEEEEEEEeccccccHHHHHHHHHHHHHhhCCCCchhheeeeEecCCEEEEEEec
Confidence            366788999999999999876  456778888876555555567889999999999999999999999888899999999


Q ss_pred             CCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        181 MAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       181 ~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +++++|.+++....+..+++..+..++.|++.||.|||+.+  ++|+||||+||+++
T Consensus        81 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~--i~h~dl~~~nil~~  135 (256)
T cd08220          81 APGGTLAEYIQKRCNSLLDEDTILHFFVQILLALHHVHTKL--ILHRDLKTQNILLD  135 (256)
T ss_pred             CCCCCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCCHHHEEEc
Confidence            99999999998755456899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=99.91  E-value=1.7e-23  Score=164.23  Aligned_cols=135  Identities=25%  Similarity=0.395  Sum_probs=114.0

Q ss_pred             CCCCCcccccccCCCCCCceeeccCC------------------CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCce
Q psy12580        100 SLNDLSLHTKISSGPNGDTWRGRWQK------------------NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNV  161 (239)
Q Consensus       100 ~~~~~~~~~~ig~g~~g~v~~~~~~~------------------~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i  161 (239)
                      ...+|.+.+.||+|+||.||++....                  ..+++|.+.... .......+.+|+.++.+++||||
T Consensus         3 ~~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~-~~~~~~~~~~e~~~l~~l~~~~i   81 (296)
T cd05051           3 PRQPLNFVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDA-SDNAREDFLKEVKILSRLSDPNI   81 (296)
T ss_pred             chhhCcccccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCcc-CHHHHHHHHHHHHHHHhcCCCCE
Confidence            34678899999999999999987632                  225566665332 23445678899999999999999


Q ss_pred             eeeeeeeeCCCceEEEEeeCCCCCHHHHhhcCC---------CcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCc
Q psy12580        162 LPVIGCVNSPPDLVVISQYMAWGSLYALLHEGA---------GIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSR  232 (239)
Q Consensus       162 v~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~---------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~  232 (239)
                      +++++++...+..++++||+.+++|.+++....         ...+++..++.++.|++.||.|||+.+  |+||||||+
T Consensus        82 ~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~LH~~~--i~H~dlkp~  159 (296)
T cd05051          82 ARLLGVCTVDPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLESLN--FVHRDLATR  159 (296)
T ss_pred             eEEEEEEecCCCcEEEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHcC--ccccccchh
Confidence            999999999899999999999999999997643         125899999999999999999999999  999999999


Q ss_pred             cceee
Q psy12580        233 HVMVY  237 (239)
Q Consensus       233 Nill~  237 (239)
                      ||+++
T Consensus       160 Nili~  164 (296)
T cd05051         160 NCLVG  164 (296)
T ss_pred             ceeec
Confidence            99986

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=99.91  E-value=8.1e-24  Score=167.06  Aligned_cols=132  Identities=15%  Similarity=0.301  Sum_probs=112.4

Q ss_pred             CCCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEE
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVIS  178 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~  178 (239)
                      .+.|...+.||+|+||.||+|...  +..+++|.+..... ......+.+|+.+++.++||||+++++++..++..++||
T Consensus         5 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~   83 (309)
T cd07872           5 METYIKLEKLGEGTYATVFKGRSKLTENLVALKEIRLEHE-EGAPCTAIREVSLLKDLKHANIVTLHDIVHTDKSLTLVF   83 (309)
T ss_pred             CCceEEEEEecccCCEEEEEEEecCCCCeEEEEEeecccc-CCcchhHHHHHHHHHhCCCCCcceEEEEEeeCCeEEEEE
Confidence            466888999999999999999863  45677788764432 222345778999999999999999999999999999999


Q ss_pred             eeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        179 QYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       179 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||+++ +|.+++.... ..+++..+..++.|++.||+|||+.+  |+||||||+|||++
T Consensus        84 e~~~~-~l~~~~~~~~-~~~~~~~~~~~~~qi~~aL~~lH~~~--ivH~dlkp~Nill~  138 (309)
T cd07872          84 EYLDK-DLKQYMDDCG-NIMSMHNVKIFLYQILRGLAYCHRRK--VLHRDLKPQNLLIN  138 (309)
T ss_pred             eCCCC-CHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCCHHHEEEC
Confidence            99975 8998887654 25889999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=99.91  E-value=1.6e-23  Score=162.38  Aligned_cols=132  Identities=25%  Similarity=0.382  Sum_probs=110.7

Q ss_pred             CcccccccCCCCCCceeeccCC-----CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCc-----
Q psy12580        104 LSLHTKISSGPNGDTWRGRWQK-----NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPD-----  173 (239)
Q Consensus       104 ~~~~~~ig~g~~g~v~~~~~~~-----~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~-----  173 (239)
                      |.+.+.+|+|+||.||.|....     ..+++|.+............+..|+..++.++||||+++++++.....     
T Consensus         1 ~~~~~~lg~G~~g~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   80 (273)
T cd05035           1 LKLGKILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPNVMKLIGVCFEASSLQKIP   80 (273)
T ss_pred             CccccccCcCCCceEEEEEEecCCCCcceEEEEEeccCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEeeeccCCccccCc
Confidence            3567889999999999998632     457778876554444555678999999999999999999998866553     


Q ss_pred             -eEEEEeeCCCCCHHHHhhcC----CCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        174 -LVVISQYMAWGSLYALLHEG----AGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 -~~lv~e~~~~gsL~~~l~~~----~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                       .++++||+++|+|..++...    ....+++..+..++.|++.||.|||+.+  ++||||||+||+++
T Consensus        81 ~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~aL~~lH~~~--i~H~dlkp~Nil~~  147 (273)
T cd05035          81 KPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGMEYLSNRN--FIHRDLAARNCMLR  147 (273)
T ss_pred             ccEEEEeccCCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHHHHHHHHHhCC--eeccccchheEEEC
Confidence             79999999999999998542    1235899999999999999999999999  99999999999985

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=99.91  E-value=7.8e-24  Score=176.17  Aligned_cols=132  Identities=16%  Similarity=0.198  Sum_probs=110.8

Q ss_pred             CCCcccccccCCCCCCceeeccC---CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEE
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRWQ---KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVIS  178 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~~---~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~  178 (239)
                      ..|.+.+.+|+|+||.||.|...   +..+++|.+...  .......+..|+.++..++||||+++++++...+..++||
T Consensus        67 ~~y~~~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~--~~~~~~~~~~E~~~l~~l~Hpniv~~~~~~~~~~~~~lv~  144 (478)
T PTZ00267         67 HMYVLTTLVGRNPTTAAFVATRGSDPKEKVVAKFVMLN--DERQAAYARSELHCLAACDHFGIVKHFDDFKSDDKLLLIM  144 (478)
T ss_pred             eeEEEEEEEEeCCCcEEEEEEEcCCCCeEEEEEEcccC--CHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEECCEEEEEE
Confidence            44788899999999999999762   345666655322  2333456778999999999999999999999999999999


Q ss_pred             eeCCCCCHHHHhhcC--CCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        179 QYMAWGSLYALLHEG--AGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       179 e~~~~gsL~~~l~~~--~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||+++|+|.+++...  ....+++..+..++.|++.||+|||+.+  |+||||||+|||++
T Consensus       145 E~~~gg~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~~--ivHrDlkp~NIll~  203 (478)
T PTZ00267        145 EYGSGGDLNKQIKQRLKEHLPFQEYEVGLLFYQIVLALDEVHSRK--MMHRDLKSANIFLM  203 (478)
T ss_pred             ECCCCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCC--EEECCcCHHhEEEC
Confidence            999999999988642  2235889999999999999999999999  99999999999987

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=99.91  E-value=8.9e-24  Score=166.69  Aligned_cols=137  Identities=23%  Similarity=0.345  Sum_probs=114.6

Q ss_pred             CCCCCCCcccccccCCCCCCceeeccCC---------CceeeeeeeeccCCchHHHHHHHHHhHhhhc-CCCceeeeeee
Q psy12580         98 GISLNDLSLHTKISSGPNGDTWRGRWQK---------NDIVAKILAVRNCTPRVSRDFNEEFPKLRIF-SHPNVLPVIGC  167 (239)
Q Consensus        98 ~~~~~~~~~~~~ig~g~~g~v~~~~~~~---------~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~l~~~  167 (239)
                      .+..++|.+.+.||+|+||.||++.+.+         ..+++|.+.... .......+..|+.++..+ +||||++++++
T Consensus        14 ~~~~~~~~i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~-~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~   92 (307)
T cd05098          14 EVPRDRLVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDA-TEKDLSDLISEMEMMKMIGKHKNIINLLGA   92 (307)
T ss_pred             eeehHHeEEeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCC-ChHHHHHHHHHHHHHHHhcCCCCEeeEEEE
Confidence            3445778999999999999999987522         246667765432 233345688899999999 79999999999


Q ss_pred             eeCCCceEEEEeeCCCCCHHHHhhcCC--------------CcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCcc
Q psy12580        168 VNSPPDLVVISQYMAWGSLYALLHEGA--------------GIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRH  233 (239)
Q Consensus       168 ~~~~~~~~lv~e~~~~gsL~~~l~~~~--------------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~N  233 (239)
                      +...+..++||||+++|+|.+++....              ...+++.+++.++.|++.||+|||+.+  ++||||||+|
T Consensus        93 ~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~g--i~H~dlkp~N  170 (307)
T cd05098          93 CTQDGPLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLASKK--CIHRDLAARN  170 (307)
T ss_pred             EecCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHCC--cccccccHHh
Confidence            999999999999999999999997642              124889999999999999999999999  9999999999


Q ss_pred             ceee
Q psy12580        234 VMVY  237 (239)
Q Consensus       234 ill~  237 (239)
                      ||++
T Consensus       171 ill~  174 (307)
T cd05098         171 VLVT  174 (307)
T ss_pred             eEEc
Confidence            9986

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=99.91  E-value=1.3e-23  Score=164.87  Aligned_cols=135  Identities=27%  Similarity=0.392  Sum_probs=112.8

Q ss_pred             CCCCCcccccccCCCCCCceeeccCCC----------------ceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceee
Q psy12580        100 SLNDLSLHTKISSGPNGDTWRGRWQKN----------------DIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLP  163 (239)
Q Consensus       100 ~~~~~~~~~~ig~g~~g~v~~~~~~~~----------------~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~  163 (239)
                      +..+|.+.+.||+|+||.||++...+.                .+++|..... ........+.+|+.++.+++|||+++
T Consensus         3 ~~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~ei~~l~~l~h~~i~~   81 (295)
T cd05097           3 PRQQLRLKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRAD-VTKTARNDFLKEIKIMSRLKNPNIIR   81 (295)
T ss_pred             chHhCeehhccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCC-CCHHHHHHHHHHHHHHHhCCCCCcCe
Confidence            346788899999999999999876321                2566666543 23344567889999999999999999


Q ss_pred             eeeeeeCCCceEEEEeeCCCCCHHHHhhcCCC----------cccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCcc
Q psy12580        164 VIGCVNSPPDLVVISQYMAWGSLYALLHEGAG----------IVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRH  233 (239)
Q Consensus       164 l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~----------~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~N  233 (239)
                      +++++...+..++||||+.+++|.+++.....          ..+++..++.++.|++.||.|||+.+  ++||||||+|
T Consensus        82 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~--i~H~dlkp~N  159 (295)
T cd05097          82 LLGVCVSDDPLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLASLN--FVHRDLATRN  159 (295)
T ss_pred             EEEEEcCCCccEEEEecCCCCcHHHHHHhccccccccccccCCcccHHHHHHHHHHHHHHHHHHHhcC--eeccccChhh
Confidence            99999999999999999999999999965321          13688899999999999999999999  9999999999


Q ss_pred             ceee
Q psy12580        234 VMVY  237 (239)
Q Consensus       234 ill~  237 (239)
                      |+++
T Consensus       160 ill~  163 (295)
T cd05097         160 CLVG  163 (295)
T ss_pred             EEEc
Confidence            9986

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=99.91  E-value=1.5e-23  Score=162.08  Aligned_cols=134  Identities=14%  Similarity=0.296  Sum_probs=114.7

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeecc-CCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEE
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRN-CTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVIS  178 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~  178 (239)
                      ++|.+.+.||+|+||.||+|..  .+..+++|.+.... ........+..|+.+++.++||||+++++++...+..++++
T Consensus         2 ~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   81 (267)
T cd08228           2 ANFQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPNVIKYLDSFIEDNELNIVL   81 (267)
T ss_pred             cceeeeeeeccCCCeeEEEEEEeCCCCEEEEEEeeccccCCHHHHHHHHHHHHHHHhCCCcceeeeeeeEEECCeEEEEE
Confidence            4678889999999999999987  45777888775432 23344567889999999999999999999999889999999


Q ss_pred             eeCCCCCHHHHhhcC--CCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        179 QYMAWGSLYALLHEG--AGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       179 e~~~~gsL~~~l~~~--~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||+++|+|.+++...  ....+++..+..++.|++.||.|||+.+  ++|+||||+||+++
T Consensus        82 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~--i~H~dl~~~nil~~  140 (267)
T cd08228          82 ELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMHSRR--VMHRDIKPANVFIT  140 (267)
T ss_pred             EecCCCcHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHhhCC--eeCCCCCHHHEEEc
Confidence            999999999988642  1235889999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=99.91  E-value=1.4e-23  Score=161.74  Aligned_cols=134  Identities=22%  Similarity=0.426  Sum_probs=114.9

Q ss_pred             CCCCCCCcccccccCCCCCCceeeccCC-CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEE
Q psy12580         98 GISLNDLSLHTKISSGPNGDTWRGRWQK-NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVV  176 (239)
Q Consensus        98 ~~~~~~~~~~~~ig~g~~g~v~~~~~~~-~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~l  176 (239)
                      .+..+.+.+.+.+|+|+||.||++..++ ..+++|.+...   ......+.+|+.+++.++|+||+++++.+.. ...++
T Consensus         2 ~~~~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~iK~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-~~~~~   77 (260)
T cd05073           2 EIPRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPG---SMSVEAFLAEANVMKTLQHDKLVKLHAVVTK-EPIYI   77 (260)
T ss_pred             cccccceeEEeEecCccceEEEEEEecCCccEEEEecCCC---hhHHHHHHHHHHHHHhcCCCCcceEEEEEcC-CCeEE
Confidence            4566788999999999999999998744 45666766432   2234678899999999999999999999877 67899


Q ss_pred             EEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        177 ISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       177 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +|||+++|+|.+++....+..+++..+..++.|++.||.|||+.+  ++||||||+||+++
T Consensus        78 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~~--i~H~dl~p~ni~i~  136 (260)
T cd05073          78 ITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRN--YIHRDLRAANILVS  136 (260)
T ss_pred             EEEeCCCCcHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHhCC--ccccccCcceEEEc
Confidence            999999999999998755456889999999999999999999999  99999999999986

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.91  E-value=5.6e-24  Score=163.79  Aligned_cols=125  Identities=17%  Similarity=0.345  Sum_probs=105.5

Q ss_pred             ccccCCCCCCceeeccCC---------CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEE
Q psy12580        108 TKISSGPNGDTWRGRWQK---------NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVIS  178 (239)
Q Consensus       108 ~~ig~g~~g~v~~~~~~~---------~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~  178 (239)
                      +.||+|+||.||+|....         ..+++|.+...  .....+.+..|..+++.+.||||+++++++..++..++||
T Consensus         1 ~~lg~G~~~~Vy~~~~~~~~~~~~~~~~~~~~k~~~~~--~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~   78 (258)
T cd05078           1 ESLGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKS--HRNYSESFFEAASMMSQLSHKHLVLNYGVCVCGDESIMVQ   78 (258)
T ss_pred             CCCCcccchhheeeeecccccccccccchhhHHhhcch--hHHHHHHHHHHHHHHHhCCCCChhheeeEEEeCCCcEEEE
Confidence            468999999999997632         12455555322  2333467888999999999999999999999988999999


Q ss_pred             eeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        179 QYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       179 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||+++|+|.++++.... .+++..+..++.||+.||+|||+.+  |+||||||+||+++
T Consensus        79 e~~~~g~L~~~l~~~~~-~~~~~~~~~~~~qi~~~l~~lH~~~--iiH~dlkp~nili~  134 (258)
T cd05078          79 EYVKFGSLDTYLKKNKN-LINISWKLEVAKQLAWALHFLEDKG--LTHGNVCAKNVLLI  134 (258)
T ss_pred             ecCCCCcHHHHHhcCCC-CCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCccceEEEe
Confidence            99999999999987542 5899999999999999999999999  99999999999995

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=99.91  E-value=1.5e-23  Score=160.94  Aligned_cols=131  Identities=25%  Similarity=0.448  Sum_probs=114.4

Q ss_pred             CCCCCcccccccCCCCCCceeeccCCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEe
Q psy12580        100 SLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQ  179 (239)
Q Consensus       100 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e  179 (239)
                      ...+|.+.+.+|+|+||.||++...+..+++|.....    .....+.+|+.++..++|||++++++++... ..+++||
T Consensus         4 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~iK~~~~~----~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~-~~~~v~e   78 (254)
T cd05083           4 NLQKLTLGEIIGEGEFGAVLQGEYTGQKVAVKNIKCD----VTAQAFLEETAVMTKLHHKNLVRLLGVILHN-GLYIVME   78 (254)
T ss_pred             cHHHceeeeeeccCCCCceEecccCCCceEEEeecCc----chHHHHHHHHHHHHhCCCCCcCeEEEEEcCC-CcEEEEE
Confidence            3466888999999999999999988888888887532    1235688899999999999999999998665 4799999


Q ss_pred             eCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       180 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |+.+++|.+++.......+++..+..++.|++.||.|||+.+  ++||||||+||+++
T Consensus        79 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~--~~H~dl~p~nili~  134 (254)
T cd05083          79 LMSKGNLVNFLRTRGRALVSVIQLLQFSLDVAEGMEYLESKK--LVHRDLAARNILVS  134 (254)
T ss_pred             CCCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhCC--eeccccCcceEEEc
Confidence            999999999998765446899999999999999999999999  99999999999986

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=99.91  E-value=1.1e-23  Score=164.26  Aligned_cols=132  Identities=19%  Similarity=0.305  Sum_probs=112.5

Q ss_pred             CCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEee
Q psy12580        103 DLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQY  180 (239)
Q Consensus       103 ~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~  180 (239)
                      +|.+.+.||+|++|.||+|..  .+..+++|.+............+.+|+.+++.++||||+++++++..++..++||||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~   80 (285)
T cd07861           1 DYTKIEKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLLKELQHPNIVCLQDVLMQESRLYLIFEF   80 (285)
T ss_pred             CceEeeEecccCceEEEEEEECCCCcEEEEEEeccccccCCchHHHHHHHHHHHhcCCCCEeeeEEEEeeCCeEEEEEec
Confidence            467788999999999999987  356677788765443333446678899999999999999999999999999999999


Q ss_pred             CCCCCHHHHhhcCC-CcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        181 MAWGSLYALLHEGA-GIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       181 ~~~gsL~~~l~~~~-~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ++ ++|.+++.... +..+++..++.++.|+++||.|||+.+  |+||||||+||+++
T Consensus        81 ~~-~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~--i~H~dl~p~nil~~  135 (285)
T cd07861          81 LS-MDLKKYLDSLPKGQYMDAELVKSYLYQILQGILFCHSRR--VLHRDLKPQNLLID  135 (285)
T ss_pred             CC-CCHHHHHhcCCCCCcCCHHHHHHHHHHHHHHHHHHHhCC--eeecCCCHHHEEEc
Confidence            97 58999887533 246899999999999999999999999  99999999999985

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=99.91  E-value=1.5e-23  Score=163.01  Aligned_cols=137  Identities=20%  Similarity=0.321  Sum_probs=115.2

Q ss_pred             CCCCCCCcccccccCCCCCCceeeccCC-------CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeC
Q psy12580         98 GISLNDLSLHTKISSGPNGDTWRGRWQK-------NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNS  170 (239)
Q Consensus        98 ~~~~~~~~~~~~ig~g~~g~v~~~~~~~-------~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~  170 (239)
                      ++..++|.+.+.||+|+||.||+|...+       ..+++|.+.... .......+.+|+.++..++||||+++++++..
T Consensus         2 ~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~-~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~   80 (277)
T cd05032           2 ELPREKITLIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENA-SMRERIEFLNEASVMKEFNCHHVVRLLGVVST   80 (277)
T ss_pred             ccchHHeeEEeEecCCCCceEEEEEEeccCCCCcceeEEEEecCCcc-CHHHHHHHHHHHHHHHhCCCCceeEEEEEEcC
Confidence            4566788899999999999999988643       456777764332 23334568889999999999999999999999


Q ss_pred             CCceEEEEeeCCCCCHHHHhhcCC--------CcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        171 PPDLVVISQYMAWGSLYALLHEGA--------GIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       171 ~~~~~lv~e~~~~gsL~~~l~~~~--------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ....++||||+++|+|.+++....        ...+++..+..++.|++.||.|||+.+  ++||||||+|||++
T Consensus        81 ~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~--i~H~di~p~nill~  153 (277)
T cd05032          81 GQPTLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLAAKK--FVHRDLAARNCMVA  153 (277)
T ss_pred             CCCcEEEEecCCCCCHHHHHHhcccchhhccCCCCCCHHHHHHHHHHHHHHHHHHHhCC--ccccccChheEEEc
Confidence            999999999999999999997532        123678899999999999999999999  99999999999986

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=99.91  E-value=1.7e-23  Score=161.78  Aligned_cols=132  Identities=20%  Similarity=0.270  Sum_probs=114.4

Q ss_pred             CCCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEE
Q psy12580        100 SLNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVI  177 (239)
Q Consensus       100 ~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv  177 (239)
                      ...+|.+.+.+|+|+||.||+|..  .+..+++|++.....  .....+.+|+.++..++||||+++++++...+..++|
T Consensus         7 ~~~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~--~~~~~~~~e~~~l~~~~h~~ii~~~~~~~~~~~~~iv   84 (267)
T cd06646           7 PQHDYELIQRVGSGTYGDVYKARNLHTGELAAVKIIKLEPG--DDFSLIQQEIFMVKECKHCNIVAYFGSYLSREKLWIC   84 (267)
T ss_pred             chhhcchhheeecCCCeEEEEEEECCCCeEEEEEEEecCcc--chHHHHHHHHHHHHhcCCCCeeeeeEEEEeCCEEEEE
Confidence            446788999999999999999986  345667777754322  2234577899999999999999999999999999999


Q ss_pred             EeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        178 SQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       178 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |||+++++|.+++....  .+++..+..++.|++.||+|||+.+  |+||||||+||+++
T Consensus        85 ~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~--i~H~dl~p~nill~  140 (267)
T cd06646          85 MEYCGGGSLQDIYHVTG--PLSELQIAYVCRETLQGLAYLHSKG--KMHRDIKGANILLT  140 (267)
T ss_pred             EeCCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCC--ccccCCCHHHEEEC
Confidence            99999999999997655  6899999999999999999999999  99999999999986

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>KOG0574|consensus

Probab=99.91  E-value=5.8e-25  Score=164.15  Aligned_cols=129  Identities=14%  Similarity=0.251  Sum_probs=112.5

Q ss_pred             CCCcccccccCCCCCCceeeccCC--CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEe
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRWQK--NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQ  179 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~~~--~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e  179 (239)
                      +-|.+..++|+|+||.||++..+.  .-+++|.+...    ...+++..|+.+|+++..|+||++||.|.....+|+|||
T Consensus        33 EVFDi~~KLGEGSYGSV~KAIH~EsG~v~AIK~VPV~----sDLQEIIKEISIMQQC~S~yVVKYYGSYFK~sDLWIVME  108 (502)
T KOG0574|consen   33 EVFDIVGKLGEGSYGSVHKAIHRESGHVLAIKKVPVD----TDLQEIIKEISIMQQCKSKYVVKYYGSYFKHSDLWIVME  108 (502)
T ss_pred             HHHHHHHHhcCCcchHHHHHHHhccCcEEEEEecCcc----chHHHHHHHHHHHHHcCCchhhhhhhhhccCCceEeehh
Confidence            456788899999999999998843  44455665442    345788999999999999999999999988888999999


Q ss_pred             eCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       180 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||..||+.+.++.+. +.+++..+..+.+..++||+|||...  -||||||..|||+.
T Consensus       109 YCGAGSiSDI~R~R~-K~L~E~EIs~iL~~TLKGL~YLH~~~--KIHRDIKAGNILLN  163 (502)
T KOG0574|consen  109 YCGAGSISDIMRARR-KPLSEQEISAVLRDTLKGLQYLHDLK--KIHRDIKAGNILLN  163 (502)
T ss_pred             hcCCCcHHHHHHHhc-CCccHHHHHHHHHHHHhHHHHHHHHH--HHHhhcccccEEEc
Confidence            999999999998765 47999999999999999999999988  89999999999984

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=99.91  E-value=1.8e-23  Score=161.89  Aligned_cols=126  Identities=22%  Similarity=0.311  Sum_probs=104.8

Q ss_pred             cccCCCCCCceeeccCC----CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEeeCCCC
Q psy12580        109 KISSGPNGDTWRGRWQK----NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWG  184 (239)
Q Consensus       109 ~ig~g~~g~v~~~~~~~----~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~~~g  184 (239)
                      .||+|+||.||+|.+.+    ..+++|.+.... .......+.+|+.+++.++||||+++++++......++||||+++|
T Consensus         2 ~lg~G~~g~Vy~~~~~~~~~~~~~~~k~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g   80 (269)
T cd05087           2 EIGNGWFGKVILGEVNSGYTPAQVVVKELRVSA-SVQEQMKFLEEAQPYRSLQHSNLLQCLGQCTEVTPYLLVMEFCPLG   80 (269)
T ss_pred             cccccCCceEEEEEEcCCCCceEEEEEecCCCC-ChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCCcEEEEECCCCC
Confidence            58999999999997643    345666664432 2233456888999999999999999999999888999999999999


Q ss_pred             CHHHHhhcCC---CcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        185 SLYALLHEGA---GIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       185 sL~~~l~~~~---~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +|.+++....   ....++..+..++.|++.||+|||+.+  ++||||||+||+++
T Consensus        81 ~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~--i~H~dlkp~nil~~  134 (269)
T cd05087          81 DLKGYLRSCRKAELMTPDPTTLQRMACEIALGLLHLHKNN--FIHSDLALRNCLLT  134 (269)
T ss_pred             cHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHCC--EeccccCcceEEEc
Confidence            9999997532   124567788899999999999999999  99999999999986

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=99.91  E-value=6.8e-24  Score=168.97  Aligned_cols=124  Identities=17%  Similarity=0.242  Sum_probs=104.0

Q ss_pred             ccCCCCCCceeecc--CCCceeeeeeeeccCC-chHHHHHHHHHhHhhhc---CCCceeeeeeeeeCCCceEEEEeeCCC
Q psy12580        110 ISSGPNGDTWRGRW--QKNDIVAKILAVRNCT-PRVSRDFNEEFPKLRIF---SHPNVLPVIGCVNSPPDLVVISQYMAW  183 (239)
Q Consensus       110 ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~-~~~~~~~~~e~~~l~~l---~h~~iv~l~~~~~~~~~~~lv~e~~~~  183 (239)
                      ||+|+||.||+|..  .+..+++|++...... .........|..++...   .||+|+++++.+...+..++||||+++
T Consensus         1 lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~i~~~~~~~~~~~~~~lv~e~~~~   80 (330)
T cd05586           1 IGKGTFGQVYQVRKKDTRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPFIVGLKFSFQTDSDLYLVTDYMSG   80 (330)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEEeHHHHhhhhHHHHHHHHHHHHHHhccCCCCcCcceEEEEecCCeEEEEEcCCCC
Confidence            69999999999987  3567888888643221 22223455566666654   699999999999999999999999999


Q ss_pred             CCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        184 GSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       184 gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |+|.+++....  .+++..+..++.||++||+|||+.+  |+||||||+|||++
T Consensus        81 g~L~~~l~~~~--~~~~~~~~~~~~qil~al~~LH~~~--ivHrDlkp~Nili~  130 (330)
T cd05586          81 GELFWHLQKEG--RFSEDRAKFYIAELVLALEHLHKYD--IVYRDLKPENILLD  130 (330)
T ss_pred             ChHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCC--eEeccCCHHHeEEC
Confidence            99999998765  6899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=99.91  E-value=2.2e-23  Score=160.08  Aligned_cols=132  Identities=14%  Similarity=0.256  Sum_probs=114.2

Q ss_pred             CCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEee
Q psy12580        103 DLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQY  180 (239)
Q Consensus       103 ~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~  180 (239)
                      +|++.+.+|+|+||.||.+..  .+..+++|.+.... .....+.+..|+.+++.++||||+++++.+...+.+++++||
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   79 (255)
T cd08219           1 QYNVLRVVGEGSFGRALLVQHVNSDQKYAMKEIRLPK-SSSAVEDSRKEAVLLAKMKHPNIVAFKESFEADGHLYIVMEY   79 (255)
T ss_pred             CceEEEEeeccCCeEEEEEEEcCCCceEEEEEEEcCc-chHHHHHHHHHHHHHHhCCCCCcceEEEEEEECCEEEEEEee
Confidence            367788999999999999986  45667778775432 233446778899999999999999999999999999999999


Q ss_pred             CCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        181 MAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       181 ~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +++|+|.+++....+..+++..+..++.|++.||.|||+.+  |+|+||||+||+++
T Consensus        80 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~--i~H~dl~p~nili~  134 (255)
T cd08219          80 CDGGDLMQKIKLQRGKLFPEDTILQWFVQMCLGVQHIHEKR--VLHRDIKSKNIFLT  134 (255)
T ss_pred             CCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhhCC--cccCCCCcceEEEC
Confidence            99999999997655456899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=99.91  E-value=1.8e-23  Score=163.42  Aligned_cols=135  Identities=21%  Similarity=0.345  Sum_probs=112.8

Q ss_pred             CCCCCCcccccccCCCCCCceeeccC-----C--CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCC
Q psy12580         99 ISLNDLSLHTKISSGPNGDTWRGRWQ-----K--NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSP  171 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g~~g~v~~~~~~-----~--~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~  171 (239)
                      ++..++.+.+.+|+|+||.||++...     +  ..+++|.+..  ........+.+|+.++.+++||||+++++++...
T Consensus         2 ~~~~~~~~~~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~--~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~   79 (288)
T cd05093           2 IKRHNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKD--ASDNARKDFHREAELLTNLQHEHIVKFYGVCVEG   79 (288)
T ss_pred             CchHHeeeccccCCcCCeeEEeeEeccCCCCCcceEEEEEecCC--cCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecC
Confidence            34567888999999999999998741     1  2244555532  2334456788999999999999999999999999


Q ss_pred             CceEEEEeeCCCCCHHHHhhcCC-----------CcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        172 PDLVVISQYMAWGSLYALLHEGA-----------GIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       172 ~~~~lv~e~~~~gsL~~~l~~~~-----------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +..++|+||+++++|.+++....           ...+++..++.++.|++.||+|||+.+  ++||||||+|||++
T Consensus        80 ~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~lH~~~--i~H~dlkp~Nili~  154 (288)
T cd05093          80 DPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMVYLASQH--FVHRDLATRNCLVG  154 (288)
T ss_pred             CccEEEEEcCCCCCHHHHHHHcCCccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhCC--eeecccCcceEEEc
Confidence            99999999999999999997532           124899999999999999999999999  99999999999986

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=99.91  E-value=1.2e-23  Score=164.60  Aligned_cols=131  Identities=20%  Similarity=0.304  Sum_probs=115.1

Q ss_pred             CCcccccccCCCCCCceeecc--CCCceeeeeeeeccC-CchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEe
Q psy12580        103 DLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNC-TPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQ  179 (239)
Q Consensus       103 ~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e  179 (239)
                      +|.+.+.||+|++|.||++.+  .+..+++|++..... .....+.+.+|+.+++.++||||+++++++...+..++|||
T Consensus         2 ~y~~~~~ig~g~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e   81 (290)
T cd05580           2 DFEFIKTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRHPFLVNLYGSFQDDSNLYLVME   81 (290)
T ss_pred             ceEEEEEeecCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCccceeeEEEcCCeEEEEEe
Confidence            577889999999999999987  346777787754322 23345678899999999999999999999999999999999


Q ss_pred             eCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       180 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |+++++|.+++....  .+++..+..++.|++.||.|||+.+  ++|+||+|+|||++
T Consensus        82 ~~~~~~L~~~~~~~~--~l~~~~~~~~~~qil~~l~~lH~~~--i~H~dl~p~nili~  135 (290)
T cd05580          82 YVPGGELFSHLRKSG--RFPEPVARFYAAQVVLALEYLHSLD--IVYRDLKPENLLLD  135 (290)
T ss_pred             cCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCC--EecCCCCHHHEEEC
Confidence            999999999998765  6899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=99.91  E-value=1.1e-23  Score=175.50  Aligned_cols=136  Identities=11%  Similarity=0.120  Sum_probs=115.9

Q ss_pred             CCCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCC-----
Q psy12580        100 SLNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP-----  172 (239)
Q Consensus       100 ~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~-----  172 (239)
                      ....|.+.+.||+|+||.||++..  .+..+++|.+............+.+|+..+..+.|+|++++...+...+     
T Consensus        30 ~~~rY~i~~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~Ei~~l~~~~h~~iv~~~~~~~~~~~~~~~  109 (496)
T PTZ00283         30 QAKKYWISRVLGSGATGTVLCAKRVSDGEPFAVKVVDMEGMSEADKNRAQAEVCCLLNCDFFSIVKCHEDFAKKDPRNPE  109 (496)
T ss_pred             cCCCEEEEEEEecCCCEEEEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHHhcCCCCcEEEeecceecccccCcc
Confidence            346888999999999999999976  4677888998776555555677889999999999999999987764332     


Q ss_pred             ---ceEEEEeeCCCCCHHHHhhcCC--CcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        173 ---DLVVISQYMAWGSLYALLHEGA--GIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       173 ---~~~lv~e~~~~gsL~~~l~~~~--~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                         .+++||||+++|+|.++++...  ...+++..+..++.|++.||.|||+.+  |+||||||+|||++
T Consensus       110 ~~~~i~lV~Ey~~~gsL~~~l~~~~~~~~~l~e~~~~~i~~qll~aL~~lH~~~--IiHrDLKP~NILl~  177 (496)
T PTZ00283        110 NVLMIALVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHVHSKH--MIHRDIKSANILLC  177 (496)
T ss_pred             cceEEEEEEeCCCCCcHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhCC--EecCCCCHHHEEEe
Confidence               3689999999999999997532  246899999999999999999999999  99999999999996

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=99.91  E-value=2.2e-23  Score=162.10  Aligned_cols=136  Identities=21%  Similarity=0.364  Sum_probs=113.0

Q ss_pred             CCCCCCcccccccCCCCCCceeeccCC-------CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCC
Q psy12580         99 ISLNDLSLHTKISSGPNGDTWRGRWQK-------NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSP  171 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g~~g~v~~~~~~~-------~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~  171 (239)
                      +..++|.+.+.||+|++|.||+|.+.+       ..+++|..... ........+..|+.+++.++|+||+++++++...
T Consensus         3 ~~~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~-~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~   81 (277)
T cd05036           3 VPRDSITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPES-CSEQDESDFLMEALIMSKFNHQNIVRLIGVSFER   81 (277)
T ss_pred             CCHHHcEeeeECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCC-CCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEccC
Confidence            344667888999999999999998854       23444544322 2233445688999999999999999999999888


Q ss_pred             CceEEEEeeCCCCCHHHHhhcCCC-----cccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        172 PDLVVISQYMAWGSLYALLHEGAG-----IVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       172 ~~~~lv~e~~~~gsL~~~l~~~~~-----~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +..++||||+++++|.+++.....     ..+++..+..++.||+.||.|||+.+  ++||||||+||+++
T Consensus        82 ~~~~lv~e~~~g~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~--ivH~dlkp~nil~~  150 (277)
T cd05036          82 LPRFILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLEENH--FIHRDIAARNCLLT  150 (277)
T ss_pred             CCcEEEEecCCCCCHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC--EeecccchheEEEe
Confidence            899999999999999999976431     24889999999999999999999999  99999999999996

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=99.90  E-value=2.4e-23  Score=163.08  Aligned_cols=138  Identities=24%  Similarity=0.374  Sum_probs=115.6

Q ss_pred             cCCCCCCCcccccccCCCCCCceeeccCC-------CceeeeeeeeccCCchHHHHHHHHHhHhhhc-CCCceeeeeeee
Q psy12580         97 KGISLNDLSLHTKISSGPNGDTWRGRWQK-------NDIVAKILAVRNCTPRVSRDFNEEFPKLRIF-SHPNVLPVIGCV  168 (239)
Q Consensus        97 ~~~~~~~~~~~~~ig~g~~g~v~~~~~~~-------~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~l~~~~  168 (239)
                      ..+...+|+..+.||+|+||.||++.+.+       ..+++|.+... ........+.+|+.++..+ +|+||+++++++
T Consensus         7 ~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~-~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~   85 (293)
T cd05053           7 WELPRDRLTLGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDD-ATEKDLSDLVSEMEMMKMIGKHKNIINLLGVC   85 (293)
T ss_pred             cccCHhHeEEeeEecccccccEEEEEEecCCCCCCceeEEEEEccCC-CCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEE
Confidence            44566778889999999999999998632       34566766533 2233445688999999999 799999999999


Q ss_pred             eCCCceEEEEeeCCCCCHHHHhhcC--------------CCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccc
Q psy12580        169 NSPPDLVVISQYMAWGSLYALLHEG--------------AGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHV  234 (239)
Q Consensus       169 ~~~~~~~lv~e~~~~gsL~~~l~~~--------------~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Ni  234 (239)
                      ...+..+++|||+++|+|.+++...              ....+++..++.++.|++.||.|||+.+  |+||||||+||
T Consensus        86 ~~~~~~~li~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~--ivH~dlkp~Ni  163 (293)
T cd05053          86 TQEGPLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLASKK--CIHRDLAARNV  163 (293)
T ss_pred             cCCCCeEEEEEeCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHCC--ccccccceeeE
Confidence            9999999999999999999999642              2246889999999999999999999999  99999999999


Q ss_pred             eee
Q psy12580        235 MVY  237 (239)
Q Consensus       235 ll~  237 (239)
                      |++
T Consensus       164 l~~  166 (293)
T cd05053         164 LVT  166 (293)
T ss_pred             EEc
Confidence            986

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>KOG3653|consensus

Probab=99.90  E-value=4.6e-24  Score=167.37  Aligned_cols=128  Identities=26%  Similarity=0.437  Sum_probs=112.9

Q ss_pred             CCCCcccccccCCCCCCceeeccCCCceeeeeeeeccCCchHHHHHHHHHhHhhh--cCCCceeeeeeeeeCCC----ce
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRI--FSHPNVLPVIGCVNSPP----DL  174 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~--l~h~~iv~l~~~~~~~~----~~  174 (239)
                      ...+++.+.+|+|.||.||+|.+.++.||||++..     +..+.|..|-.+++.  ++|+||++++++-....    .+
T Consensus       209 l~pl~l~eli~~Grfg~V~KaqL~~~~VAVKifp~-----~~kqs~~~Ek~Iy~lp~m~h~nIl~Fi~~ekr~t~~~~ey  283 (534)
T KOG3653|consen  209 LDPLQLLELIGRGRFGCVWKAQLDNRLVAVKIFPE-----QEKQSFQNEKNIYSLPGMKHENILQFIGAEKRGTADRMEY  283 (534)
T ss_pred             CCchhhHHHhhcCccceeehhhccCceeEEEecCH-----HHHHHHHhHHHHHhccCccchhHHHhhchhccCCccccce
Confidence            45567889999999999999999999999999864     344678888888775  48999999999887665    89


Q ss_pred             EEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCC-------CCcccCCCCCcccee
Q psy12580        175 VVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLE-------RIIPQYQLNSRHVMV  236 (239)
Q Consensus       175 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~-------~~ivHrdikp~Nill  236 (239)
                      +||+||.+.|||.+||+..-   ++|....+++..+++||+|||+--       |+|+|||||++|||+
T Consensus       284 wLVt~fh~kGsL~dyL~~nt---isw~~~cria~SmarGLa~LHee~p~~d~~Kp~IaHRDlkSkNVLv  349 (534)
T KOG3653|consen  284 WLVTEFHPKGSLCDYLKANT---ISWNSLCRIAESMARGLAHLHEELPRGDHHKPPIAHRDLKSKNVLV  349 (534)
T ss_pred             eEEeeeccCCcHHHHHHhcc---ccHHHHHHHHHHHHHHHHHhcccCCcCCCCCCccccccccccceEE
Confidence            99999999999999999875   899999999999999999999732       679999999999997

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=99.90  E-value=1.6e-23  Score=165.89  Aligned_cols=133  Identities=18%  Similarity=0.267  Sum_probs=116.7

Q ss_pred             CCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCc-hHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEe
Q psy12580        103 DLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTP-RVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQ  179 (239)
Q Consensus       103 ~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~-~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e  179 (239)
                      +|+..+.||+|++|.||++...  +..+++|.+....... ...+.+..|+.++..++||||+++++.+......++|||
T Consensus         2 ~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e   81 (316)
T cd05574           2 HFKKIKLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDHPFLPTLYASFQTETYLCLVMD   81 (316)
T ss_pred             ceEEeeeecCCccEEEEEEEEcCCCcEEEEEEEeccccchHHHHHHHHHHHHHHHhCCCCCchhheeeeecCCEEEEEEE
Confidence            5778889999999999999874  4677788886554332 344678899999999999999999999999999999999


Q ss_pred             eCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       180 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |+.+++|.+++....+..+++..+..++.|+++||+|||+.+  ++|+||||+||+++
T Consensus        82 ~~~~~~L~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~--i~H~dlkp~Nili~  137 (316)
T cd05574          82 YCPGGELFRLLQRQPGKCLSEEVARFYAAEVLLALEYLHLLG--IVYRDLKPENILLH  137 (316)
T ss_pred             ecCCCCHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHCC--eeccCCChHHeEEc
Confidence            999999999998765557999999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=99.90  E-value=2.1e-23  Score=160.71  Aligned_cols=133  Identities=24%  Similarity=0.506  Sum_probs=112.0

Q ss_pred             CCCCCCcccccccCCCCCCceeeccCC-CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEE
Q psy12580         99 ISLNDLSLHTKISSGPNGDTWRGRWQK-NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVI  177 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g~~g~v~~~~~~~-~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv  177 (239)
                      +....+.+...||+|++|.||++.+.+ ..+++|.+....   ...+.+.+|+.+++.++|||++++++++.. +..+++
T Consensus         3 ~~~~~~~~~~~ig~g~~~~v~~~~~~~~~~~~lK~~~~~~---~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~~~v   78 (260)
T cd05069           3 IPRESLRLDVKLGQGCFGEVWMGTWNGTTKVAIKTLKPGT---MMPEAFLQEAQIMKKLRHDKLVPLYAVVSE-EPIYIV   78 (260)
T ss_pred             CChHHeeeeeeecCcCCCeEEEEEEcCCceEEEEEcccCC---ccHHHHHHHHHHHHhCCCCCeeeEEEEEcC-CCcEEE
Confidence            445667888999999999999998755 456667664322   223568889999999999999999998754 568899


Q ss_pred             EeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        178 SQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       178 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |||+.+|+|.+++.......+++..+..++.|++.||.|||+.+  ++||||||+||+++
T Consensus        79 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~--i~H~dl~~~Nill~  136 (260)
T cd05069          79 TEFMGKGSLLDFLKEGDGKYLKLPQLVDMAAQIADGMAYIERMN--YIHRDLRAANILVG  136 (260)
T ss_pred             EEcCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHhCC--EeecccCcceEEEc
Confidence            99999999999998755446899999999999999999999999  99999999999986

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=99.90  E-value=1.3e-23  Score=165.31  Aligned_cols=138  Identities=22%  Similarity=0.360  Sum_probs=115.6

Q ss_pred             cCCCCCCCcccccccCCCCCCceeeccC-------CCceeeeeeeeccCCchHHHHHHHHHhHhhhc-CCCceeeeeeee
Q psy12580         97 KGISLNDLSLHTKISSGPNGDTWRGRWQ-------KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIF-SHPNVLPVIGCV  168 (239)
Q Consensus        97 ~~~~~~~~~~~~~ig~g~~g~v~~~~~~-------~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~l~~~~  168 (239)
                      +....++|.+.+.||+|+||.||++...       +..+++|.+.... .....+.+.+|+.+++++ +||||+++++++
T Consensus        30 ~~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~  108 (302)
T cd05055          30 WEFPRNNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTA-HSSEREALMSELKIMSHLGNHENIVNLLGAC  108 (302)
T ss_pred             ccccHHHeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccC-ChHHHHHHHHHHHHHHhccCCCCcceEEEEE
Confidence            3455577889999999999999998641       1245666664332 233346788999999999 799999999999


Q ss_pred             eCCCceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        169 NSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       169 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ...+..+++|||+.+|+|.++++......+++.++..++.|++.||.|||+.+  |+|+||||+|||++
T Consensus       109 ~~~~~~~lv~e~~~~~~L~~~i~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~~--ivH~dlkp~Nil~~  175 (302)
T cd05055         109 TIGGPILVITEYCCYGDLLNFLRRKRESFLTLEDLLSFSYQVAKGMAFLASKN--CIHRDLAARNVLLT  175 (302)
T ss_pred             ecCCceEEEEEcCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCC--eehhhhccceEEEc
Confidence            99999999999999999999998655345899999999999999999999999  99999999999986

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=99.90  E-value=1.6e-23  Score=163.42  Aligned_cols=131  Identities=15%  Similarity=0.207  Sum_probs=113.1

Q ss_pred             CCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEee
Q psy12580        103 DLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQY  180 (239)
Q Consensus       103 ~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~  180 (239)
                      .|+..+.+|+|++|.||++...  +..+++|.+..........+.+.+|+.+++.++|||++++++++..+...++||||
T Consensus         2 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~e~   81 (286)
T cd07847           2 KYEKLSKIGEGSYGVVFKCRNRETGQIVAIKKFVESEDDPVIKKIALREIRMLKQLKHPNLVNLIEVFRRKRKLHLVFEY   81 (286)
T ss_pred             ceeeeeeecccCCeEEEEEEECCCCcEEEEEEEeecccCccccHHHHHHHHHHHhCCCCCEeeeeeEEeeCCEEEEEEec
Confidence            4677889999999999999874  56777888765433333345678899999999999999999999999999999999


Q ss_pred             CCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        181 MAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       181 ~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +++++|..++....  .+++..+..++.|++.||.|||+.+  ++||||||+||+++
T Consensus        82 ~~~~~l~~~~~~~~--~~~~~~~~~~~~ql~~~l~~LH~~~--i~H~dl~p~nil~~  134 (286)
T cd07847          82 CDHTVLNELEKNPR--GVPEHLIKKIIWQTLQAVNFCHKHN--CIHRDVKPENILIT  134 (286)
T ss_pred             cCccHHHHHHhCCC--CCCHHHHHHHHHHHHHHHHHHHHCC--ceecCCChhhEEEc
Confidence            99988887776554  5899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=99.90  E-value=2.8e-23  Score=160.75  Aligned_cols=126  Identities=20%  Similarity=0.322  Sum_probs=103.3

Q ss_pred             cccCCCCCCceeeccC-CCc---eeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEeeCCCC
Q psy12580        109 KISSGPNGDTWRGRWQ-KND---IVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWG  184 (239)
Q Consensus       109 ~ig~g~~g~v~~~~~~-~~~---~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~~~g  184 (239)
                      .||+|+||.||++... +..   +++|.+... ......+.+.+|+.+++.++||||+++++.+......++||||+++|
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~~~k~~~~~-~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~   80 (268)
T cd05086           2 EIGNGWFGKVLLSEIYTDTGVARVVVKELKAN-ASSKEQNEFLQQGDPYRILQHPNILQCLGQCVEAIPYLLVFEYCELG   80 (268)
T ss_pred             cCCCCcCceEEEEEEEcCCCcceEEEEEecCC-CChHHHHHHHHHHHHHhccCCcchhheEEEecCCCccEEEEecCCCC
Confidence            5899999999999753 222   233443322 22334567899999999999999999999999999999999999999


Q ss_pred             CHHHHhhcCC--CcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        185 SLYALLHEGA--GIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       185 sL~~~l~~~~--~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +|.+++....  ...+++..+..++.|++.||+|||+.+  ++||||||+|||++
T Consensus        81 ~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~--i~H~dikp~nil~~  133 (268)
T cd05086          81 DLKSYLSQEQWHRRNSQLLLLQRMACEIAAGVTHMHKHN--FLHSDLALRNCFLT  133 (268)
T ss_pred             cHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHCC--eeccCCccceEEEc
Confidence            9999997642  234677788999999999999999999  99999999999985

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=99.90  E-value=1.5e-23  Score=162.18  Aligned_cols=130  Identities=16%  Similarity=0.303  Sum_probs=113.3

Q ss_pred             CcccccccCCCCCCceeecc--CCCceeeeeeeeccCC----chHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEE
Q psy12580        104 LSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCT----PRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVI  177 (239)
Q Consensus       104 ~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~----~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv  177 (239)
                      |+..+.||+|++|.||++..  .+..+++|.+......    ....+.+..|+..++.++|+||+++++++..++..++|
T Consensus         2 ~~~~~~lg~g~~~~v~~~~~~~~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~v   81 (268)
T cd06630           2 WLKGQQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIRMLGATCEDSHFNLF   81 (268)
T ss_pred             ccccceecCcCceEEEEEEEcCCCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHHcCCCceehhhceeccCCeEEEE
Confidence            56678899999999999875  4567788887643321    12346788999999999999999999999999999999


Q ss_pred             EeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        178 SQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       178 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +||+++++|.+++....  .+++..+..++.|++.||.|||+.|  ++|+||||+||+++
T Consensus        82 ~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~ql~~al~~LH~~~--i~H~~i~~~nil~~  137 (268)
T cd06630          82 VEWMAGGSVSHLLSKYG--AFKEAVIINYTEQLLRGLSYLHENQ--IIHRDVKGANLLID  137 (268)
T ss_pred             EeccCCCcHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCCHHHEEEc
Confidence            99999999999998765  6899999999999999999999999  99999999999985

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=99.90  E-value=2.2e-23  Score=164.33  Aligned_cols=131  Identities=17%  Similarity=0.254  Sum_probs=114.1

Q ss_pred             CCcccccccCCCCCCceeeccC--CCceeeeeeeeccCC-chHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEe
Q psy12580        103 DLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCT-PRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQ  179 (239)
Q Consensus       103 ~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e  179 (239)
                      +|+..+.+|+|+||.||++...  +..+++|.+...... ......+.+|+.+++.++||||+++++.+..++..++|||
T Consensus         2 ~y~~~~~l~~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e   81 (305)
T cd05609           2 DFETIKLISNGAYGAVYLVRHKETRQRFAMKKINKQNLILRNQIQQVFVERDILTFAENPFVVSMFCSFETKRHLCMVME   81 (305)
T ss_pred             CceEeeEeecCCCeeEEEEEECCCCcEEEEEEeehhhhhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEecCCEEEEEEe
Confidence            5778889999999999999874  466788877654321 2334567889999999999999999999999999999999


Q ss_pred             eCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       180 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |+++++|.+++....  .+++..+..++.|++.||.|||+.+  ++||||||+||+++
T Consensus        82 ~~~g~~L~~~l~~~~--~~~~~~~~~~~~~i~~~l~~lH~~~--i~H~dl~p~NIll~  135 (305)
T cd05609          82 YVEGGDCATLLKNIG--ALPVDMARMYFAETVLALEYLHNYG--IVHRDLKPDNLLIT  135 (305)
T ss_pred             cCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCC--ccccCCchHHEEEC
Confidence            999999999998765  6899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=99.90  E-value=2e-23  Score=164.51  Aligned_cols=138  Identities=23%  Similarity=0.333  Sum_probs=114.9

Q ss_pred             cCCCCCCCcccccccCCCCCCceeeccC---------CCceeeeeeeeccCCchHHHHHHHHHhHhhhc-CCCceeeeee
Q psy12580         97 KGISLNDLSLHTKISSGPNGDTWRGRWQ---------KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIF-SHPNVLPVIG  166 (239)
Q Consensus        97 ~~~~~~~~~~~~~ig~g~~g~v~~~~~~---------~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~l~~  166 (239)
                      +.+...+|.+.+.||+|+||.||++.+.         +..+++|..... ......+.+.+|+.++..+ +||||+++++
T Consensus        10 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~-~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~   88 (304)
T cd05101          10 WEFSRDKLTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDD-ATEKDLSDLVSEMEMMKMIGKHKNIINLLG   88 (304)
T ss_pred             ccccHHHeeecceeeccCCceEEEEEEeccCCCCCCcceeEEeeecccc-cchHHHHHHHHHHHHHHhhccCCCchheeE
Confidence            3466678889999999999999998641         123566666432 2234456788999999999 8999999999


Q ss_pred             eeeCCCceEEEEeeCCCCCHHHHhhcCC--------------CcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCc
Q psy12580        167 CVNSPPDLVVISQYMAWGSLYALLHEGA--------------GIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSR  232 (239)
Q Consensus       167 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~--------------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~  232 (239)
                      ++......+++|||+++|+|.+++....              ...+++.++..++.|+++||.|||+.|  ++||||||+
T Consensus        89 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~g--ivH~dlkp~  166 (304)
T cd05101          89 ACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLASQK--CIHRDLAAR  166 (304)
T ss_pred             EEecCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCCcccccHHHHHHHHHHHHHHHHHHHHCC--eeecccccc
Confidence            9999999999999999999999997642              135788899999999999999999999  999999999


Q ss_pred             cceee
Q psy12580        233 HVMVY  237 (239)
Q Consensus       233 Nill~  237 (239)
                      ||+++
T Consensus       167 Nili~  171 (304)
T cd05101         167 NVLVT  171 (304)
T ss_pred             eEEEc
Confidence            99986

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.90  E-value=3.3e-23  Score=159.78  Aligned_cols=132  Identities=14%  Similarity=0.257  Sum_probs=114.8

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCC---chHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEE
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCT---PRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVV  176 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~---~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~l  176 (239)
                      ++|...+.+|+|++|.||.+..  .+..+++|.+......   ....+.+.+|+.+++.++||||+++++++...+..++
T Consensus         2 ~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   81 (263)
T cd06625           2 TNWRRGKLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQYYGCLRDDETLSI   81 (263)
T ss_pred             CcccccceecCCCceEEEEEEEcCCCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEccCCeEEE
Confidence            4578889999999999999975  4577788877544322   1233568889999999999999999999999999999


Q ss_pred             EEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        177 ISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       177 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |+||+++++|.+++....  .+++..+..++.|++.||.|||+.+  |+||||||+||+++
T Consensus        82 v~e~~~~~~l~~~~~~~~--~~~~~~~~~~~~~l~~~l~~lH~~~--i~H~dl~p~nilv~  138 (263)
T cd06625          82 FMEYMPGGSVKDQLKAYG--ALTETVTRKYTRQILEGVEYLHSNM--IVHRDIKGANILRD  138 (263)
T ss_pred             EEEECCCCcHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCCHHHEEEc
Confidence            999999999999998765  6899999999999999999999999  99999999999987

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=99.90  E-value=2.3e-23  Score=162.19  Aligned_cols=131  Identities=17%  Similarity=0.246  Sum_probs=114.4

Q ss_pred             CCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEe
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQ  179 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e  179 (239)
                      +.|++.+.+|+|++|.||++.+.  +..+++|.....  .....+.+..|+.++++++||||+++++.+..+...++|||
T Consensus         5 ~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   82 (280)
T cd06611           5 DIWEIIGELGDGAFGKVYKAQHKETGLFAAAKIIQIE--SEEELEDFMVEIDILSECKHPNIVGLYEAYFYENKLWILIE   82 (280)
T ss_pred             hHHHHHHHhcCCCCceEEEEEEcCCCcEEEEEEEeeC--CHHHHHHHHHHHHHHHhCCCCceeEEEEEEecCCeEEEEee
Confidence            56788899999999999999874  456666776533  33344678899999999999999999999999999999999


Q ss_pred             eCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       180 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |+++++|.+++.... ..+++..+..++.|++.||.|||+.+  |+|+||||+||+++
T Consensus        83 ~~~~~~L~~~~~~~~-~~l~~~~~~~~~~ql~~~l~~lh~~~--i~h~dl~p~nili~  137 (280)
T cd06611          83 FCDGGALDSIMLELE-RGLTEPQIRYVCRQMLEALNFLHSHK--VIHRDLKAGNILLT  137 (280)
T ss_pred             ccCCCcHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCChhhEEEC
Confidence            999999999987644 25899999999999999999999999  99999999999986

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=99.90  E-value=3.2e-23  Score=161.30  Aligned_cols=134  Identities=22%  Similarity=0.448  Sum_probs=112.8

Q ss_pred             CCCCCCcccccccCCCCCCceeeccCC--C----ceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCC
Q psy12580         99 ISLNDLSLHTKISSGPNGDTWRGRWQK--N----DIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP  172 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g~~g~v~~~~~~~--~----~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~  172 (239)
                      +...+|++.+.||+|+||.||+|.+..  .    .+++|...... .......+.+|+..+..++||||+++++++.. .
T Consensus         4 ~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~   81 (279)
T cd05057           4 LKETELEKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREET-SPKANKEILDEAYVMASVDHPHVVRLLGICLS-S   81 (279)
T ss_pred             cCHHHcEEcceecCCCCccEEEEEEecCCCCcceEEEEEeccCCC-CHHHHHHHHHHHHHHHhCCCCCcceEEEEEec-C
Confidence            345678888999999999999998632  2    24556554332 23445678899999999999999999999987 6


Q ss_pred             ceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        173 DLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       173 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ..++|+||+++|+|.+++..... .+++..+..++.|++.||+|||+.+  ++||||||+||+++
T Consensus        82 ~~~~v~e~~~~g~L~~~l~~~~~-~~~~~~~~~~~~qi~~~l~~LH~~~--i~H~di~p~nil~~  143 (279)
T cd05057          82 QVQLITQLMPLGCLLDYVRNHKD-NIGSQYLLNWCVQIAKGMSYLEEKR--LVHRDLAARNVLVK  143 (279)
T ss_pred             ceEEEEecCCCCcHHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHhCC--EEecccCcceEEEc
Confidence            79999999999999999987543 4899999999999999999999999  99999999999986

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>KOG2345|consensus

Probab=99.90  E-value=4.5e-24  Score=154.90  Aligned_cols=138  Identities=17%  Similarity=0.175  Sum_probs=118.6

Q ss_pred             CCCCCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCC---
Q psy12580         98 GISLNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP---  172 (239)
Q Consensus        98 ~~~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~---  172 (239)
                      .++.+.|.+.+.+|+|+|+.||.++.  .++.+++|.+....  .+..+...+|++..++++||||+++++......   
T Consensus        17 ~In~~Ryri~~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c~~--~~~~e~~~rEid~~rkf~s~~vl~l~dh~l~~~~D~   94 (302)
T KOG2345|consen   17 IINNKRYRIQRLLGEGGFSFVDLVKGLSTGHLYALKKILCHS--QEDIEEALREIDNHRKFNSPNVLRLVDHQLREEKDG   94 (302)
T ss_pred             EEcCceEEEeeeecCCCceeeeeecccCcccchhhheeeccc--hHHHHHHHHHHHHHHhhCCcchHHHHHHHHHhhccC
Confidence            36778899999999999999998874  56778888876543  445567889999999999999999998774433   


Q ss_pred             --ceEEEEeeCCCCCHHHHhhc--CCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        173 --DLVVISQYMAWGSLYALLHE--GAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       173 --~~~lv~e~~~~gsL~~~l~~--~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                        ..||+++|...|||.+.++.  ..+..+++.+++.|+.++++||++||+..+++.||||||.|||+.
T Consensus        95 ~~~~yll~Pyy~~Gsl~d~i~~~k~kg~~~sE~~iL~if~gic~gL~~lH~~~~~yAH~DiKP~NILls  163 (302)
T KOG2345|consen   95 KHEAYLLLPYYKRGSLLDEIERLKIKGNFVSEAQILWIFLGICRGLEALHEKEPPYAHRDIKPANILLS  163 (302)
T ss_pred             ceeEEEEeehhccccHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHhccCCcccccCCCcceeEec
Confidence              59999999999999999985  234479999999999999999999999999999999999999985

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=99.90  E-value=3.4e-23  Score=162.05  Aligned_cols=132  Identities=25%  Similarity=0.466  Sum_probs=109.3

Q ss_pred             CCcccccccCCCCCCceeeccCC-------CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceE
Q psy12580        103 DLSLHTKISSGPNGDTWRGRWQK-------NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLV  175 (239)
Q Consensus       103 ~~~~~~~ig~g~~g~v~~~~~~~-------~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~  175 (239)
                      +|++.+.||+|+||.||+|....       ..+++|.+... ........+.+|+.+++.++||||+++++.+...+..+
T Consensus         1 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~-~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   79 (290)
T cd05045           1 NLVLGKTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKEN-ASSSELRDLLSEFNLLKQVNHPHVIKLYGACSQDGPLL   79 (290)
T ss_pred             CccccccccCcCCcceEEEEEecCCCCCcceeEEEEecCCC-CCHHHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCCcE
Confidence            36678899999999999997532       23444555432 22334467889999999999999999999999999999


Q ss_pred             EEEeeCCCCCHHHHhhcCC----------------------CcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCcc
Q psy12580        176 VISQYMAWGSLYALLHEGA----------------------GIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRH  233 (239)
Q Consensus       176 lv~e~~~~gsL~~~l~~~~----------------------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~N  233 (239)
                      +++||+.+|+|.+++....                      ...+++..+..++.|++.||.|||+.+  |+||||||+|
T Consensus        80 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~--ivH~dikp~n  157 (290)
T cd05045          80 LIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMGDLISFAWQISRGMQYLAEMK--LVHRDLAARN  157 (290)
T ss_pred             EEEEecCCCCHHHHHHhcCCccccccccccccccccccCccccccCHHHHHHHHHHHHHHHHHHHHCC--eehhhhhhhe
Confidence            9999999999999986421                      124789999999999999999999999  9999999999


Q ss_pred             ceee
Q psy12580        234 VMVY  237 (239)
Q Consensus       234 ill~  237 (239)
                      ||++
T Consensus       158 ill~  161 (290)
T cd05045         158 VLVA  161 (290)
T ss_pred             EEEc
Confidence            9986

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=99.90  E-value=3.2e-23  Score=160.13  Aligned_cols=131  Identities=16%  Similarity=0.294  Sum_probs=112.7

Q ss_pred             CCcccccccCCCCCCceeecc-CCCceeeeeeeeccCC----chHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEE
Q psy12580        103 DLSLHTKISSGPNGDTWRGRW-QKNDIVAKILAVRNCT----PRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVI  177 (239)
Q Consensus       103 ~~~~~~~ig~g~~g~v~~~~~-~~~~~~vk~~~~~~~~----~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv  177 (239)
                      +|...+.||+|+||.||+|.. .++.+++|.+......    ......+.+|+.+++.++|+||+++++++...+..+++
T Consensus         1 ~~~~~~~ig~g~~~~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv   80 (265)
T cd06631           1 EWTKGEVLGKGAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQYLGTCLDDNTISIF   80 (265)
T ss_pred             CccccceEeccCCeEEEEEEEcCCCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhcCCCCEeeEeeEeecCCeEEEE
Confidence            356778899999999999987 4455777877644321    12235688899999999999999999999999999999


Q ss_pred             EeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        178 SQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       178 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +||+++++|.+++.+..  .+++..+..++.|++.||+|||+.+  |+|+||||+||+++
T Consensus        81 ~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~--i~H~dl~p~nil~~  136 (265)
T cd06631          81 MEFVPGGSISSILNRFG--PLPEPVFCKYTKQILDGVAYLHNNC--VVHRDIKGNNVMLM  136 (265)
T ss_pred             EecCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCC--cccCCcCHHhEEEC
Confidence            99999999999998765  5899999999999999999999999  99999999999986

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=99.90  E-value=3.3e-23  Score=159.20  Aligned_cols=132  Identities=27%  Similarity=0.463  Sum_probs=114.5

Q ss_pred             CCCCCcccccccCCCCCCceeeccC-CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEE
Q psy12580        100 SLNDLSLHTKISSGPNGDTWRGRWQ-KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVIS  178 (239)
Q Consensus       100 ~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~  178 (239)
                      ...++++.+.||+|+||.||++.+. +..+++|.+......   ...+..|+.+++.+.||+++++++++......++|+
T Consensus         2 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~k~~~~~~~~---~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~   78 (256)
T cd05112           2 HPSELTLVQEIGSGQFGLVWLGYWLEKRKVAIKTIREGAMS---EEDFIEEAQVMMKLSHPKLVQLYGVCTERSPICLVF   78 (256)
T ss_pred             ChhHeEEEeeecCcccceEEEEEEeCCCeEEEEECCCCCCC---HHHHHHHHHHHHhCCCCCeeeEEEEEccCCceEEEE
Confidence            3457788899999999999999875 566777776543322   356888999999999999999999999888999999


Q ss_pred             eeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        179 QYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       179 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||+.+++|.+++....+ .+++..+..++.|++.||.|||+.+  ++||||||+||+++
T Consensus        79 e~~~~~~L~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~lH~~~--i~h~dl~p~ni~i~  134 (256)
T cd05112          79 EFMEHGCLSDYLRAQRG-KFSQETLLGMCLDVCEGMAYLESSN--VIHRDLAARNCLVG  134 (256)
T ss_pred             EcCCCCcHHHHHHhCcc-CCCHHHHHHHHHHHHHHHHHHHHCC--ccccccccceEEEc
Confidence            99999999999986542 5889999999999999999999999  99999999999986

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=99.90  E-value=9.9e-24  Score=162.31  Aligned_cols=131  Identities=15%  Similarity=0.225  Sum_probs=115.8

Q ss_pred             CCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCc-hHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEe
Q psy12580        103 DLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTP-RVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQ  179 (239)
Q Consensus       103 ~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~-~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e  179 (239)
                      +|++.+.||+|+||.||++...  +..+++|.+....... ...+.+.+|+.++++++||||+++++++..+...++|+|
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   80 (258)
T cd05578           1 HFELLRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHPFLVNLWYSFQDEENMYLVVD   80 (258)
T ss_pred             CceEEEEeccCCCceEEEEEEccCCcEEEEEEEehhhhcchhHHHHHHHHHHHHHhCCCCChHHHHHhhcCCCeEEEEEe
Confidence            3677889999999999999874  5677778886543332 455788999999999999999999999999999999999


Q ss_pred             eCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       180 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |+.+++|.+++....  .+++..+..++.|+++||.|||+.+  ++|+||+|+||+++
T Consensus        81 ~~~~~~L~~~l~~~~--~l~~~~~~~~~~~i~~~l~~lh~~~--i~h~dl~~~nil~~  134 (258)
T cd05578          81 LLLGGDLRYHLSQKV--KFSEEQVKFWICEIVLALEYLHSKG--IIHRDIKPDNILLD  134 (258)
T ss_pred             CCCCCCHHHHHHhcC--CcCHHHHHHHHHHHHHHHHHHHhCC--eeccCCCHHHeEEc
Confidence            999999999998764  6899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.90  E-value=5.1e-23  Score=160.57  Aligned_cols=132  Identities=24%  Similarity=0.393  Sum_probs=111.0

Q ss_pred             CCCCcccccccCCCCCCceeecc------CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCC--C
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRW------QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSP--P  172 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~------~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~--~  172 (239)
                      ..++.+.+.||+|+||.||++.+      .+..+++|.+...  .....+.+.+|+.++..++||||+++++++...  .
T Consensus         3 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~--~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~   80 (284)
T cd05081           3 ERHLKFIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHS--TAEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRR   80 (284)
T ss_pred             cccceeeeeccCCCCceEEEEEecCCcCCCCcEEEEEEeccC--CHHHHHHHHHHHHHHHhCCCCCeeEEEEEEccCCCC
Confidence            35678889999999999999874      2456677776432  234456788999999999999999999987543  4


Q ss_pred             ceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        173 DLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       173 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .+++|+||+++|+|.+++..... .+++..+..++.|++.||.|||+.|  |+||||||+||+++
T Consensus        81 ~~~lv~e~~~~~~L~~~l~~~~~-~l~~~~~~~~~~~l~~aL~~LH~~~--i~H~dlkp~nili~  142 (284)
T cd05081          81 NLRLVMEYLPYGSLRDYLQKHRE-RLDHRKLLLYASQICKGMEYLGSKR--YVHRDLATRNILVE  142 (284)
T ss_pred             ceEEEEEecCCCCHHHHHHhcCc-CCCHHHHHHHHHHHHHHHHHHHHCC--ceeccCCHhhEEEC
Confidence            68999999999999999976542 5899999999999999999999999  99999999999986

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=99.90  E-value=1.8e-23  Score=160.72  Aligned_cols=132  Identities=17%  Similarity=0.330  Sum_probs=115.4

Q ss_pred             CcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEeeC
Q psy12580        104 LSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYM  181 (239)
Q Consensus       104 ~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~  181 (239)
                      |...+.+|+|+||.||++..+  +..+++|.+..........+.+.+|+.+++.++|+||+++++.+...+..++|+||+
T Consensus         2 ~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~   81 (257)
T cd08225           2 YEIIKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVILLAKMKHPNIVTFFASFQENGRLFIVMEYC   81 (257)
T ss_pred             ceEEEEecCCCcceEEEEEEcCCCceEEEEEeeHhhccchhhHHHHHHHHHHHhCCCCChhhhhheeccCCeEEEEEecC
Confidence            567788999999999999874  466777887655444444567889999999999999999999999999999999999


Q ss_pred             CCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        182 AWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       182 ~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ++++|.+++....+..+++..+..++.|+++||.|||+.+  ++|+||||+||+++
T Consensus        82 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~--i~H~dl~~~nil~~  135 (257)
T cd08225          82 DGGDLMKRINRQRGVLFSEDQILSWFVQISLGLKHIHDRK--ILHRDIKSQNIFLS  135 (257)
T ss_pred             CCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCC--cccccCCHHHEEEc
Confidence            9999999998765446899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=99.90  E-value=1.9e-23  Score=168.32  Aligned_cols=130  Identities=18%  Similarity=0.233  Sum_probs=109.8

Q ss_pred             CCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCC------
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP------  172 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~------  172 (239)
                      ..+|...+.||+|+||.||++..  .+..+++|.+............+.+|+.+++.++||||+++++++....      
T Consensus        20 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~   99 (359)
T cd07876          20 LKRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAYRELVLLKCVNHKNIISLLNVFTPQKSLEEFQ   99 (359)
T ss_pred             hhceEEEEEeecCCCEEEEEEEEcCCCceeEEEEecccccchhHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCCccccc
Confidence            36788899999999999999976  4567888888655444444567889999999999999999999886543      


Q ss_pred             ceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        173 DLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       173 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ..++||||+++ +|.+.+..    .+++..+..++.|++.||.|||+.+  |+||||||+|||++
T Consensus       100 ~~~lv~e~~~~-~l~~~~~~----~~~~~~~~~~~~qi~~~L~~LH~~~--ivHrDlkp~NIl~~  157 (359)
T cd07876         100 DVYLVMELMDA-NLCQVIHM----ELDHERMSYLLYQMLCGIKHLHSAG--IIHRDLKPSNIVVK  157 (359)
T ss_pred             eeEEEEeCCCc-CHHHHHhc----cCCHHHHHHHHHHHHHHHHHHHhCC--cccCCCCHHHEEEC
Confidence            47999999976 67777643    4788999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=99.90  E-value=4e-23  Score=162.24  Aligned_cols=133  Identities=27%  Similarity=0.447  Sum_probs=110.6

Q ss_pred             CCCcccccccCCCCCCceeeccCCC----ceeeeeeeeccCCchHHHHHHHHHhHhhhc-CCCceeeeeeeeeCCCceEE
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRWQKN----DIVAKILAVRNCTPRVSRDFNEEFPKLRIF-SHPNVLPVIGCVNSPPDLVV  176 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~~~~----~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~l~~~~~~~~~~~l  176 (239)
                      ++|.+.+.||+|+||.||+|...+.    .+++|.+... ......+.+.+|+.++.++ +||||+++++++...+..++
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~l   80 (297)
T cd05089           2 EDIKFEDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEF-ASENDHRDFAGELEVLCKLGHHPNIINLLGACENRGYLYI   80 (297)
T ss_pred             ccceeeeeecCCCcceEEEEEecCCCCcceeEEEEcccc-CCHHHHHHHHHHHHHHHhhcCCCchhheEEEEccCCcceE
Confidence            5688889999999999999987432    2355555422 2233446788999999999 79999999999998889999


Q ss_pred             EEeeCCCCCHHHHhhcCC--------------CcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        177 ISQYMAWGSLYALLHEGA--------------GIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       177 v~e~~~~gsL~~~l~~~~--------------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ++||+++|+|.+++....              ...+++..+..++.|++.||+|||+.+  |+||||||+|||++
T Consensus        81 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~lH~~~--ivH~dlkp~Nill~  153 (297)
T cd05089          81 AIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATGMQYLSEKQ--FIHRDLAARNVLVG  153 (297)
T ss_pred             EEEecCCCcHHHHHHhccccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHHHCC--cccCcCCcceEEEC
Confidence            999999999999997532              124788999999999999999999999  99999999999985

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=99.90  E-value=3.6e-23  Score=159.88  Aligned_cols=134  Identities=14%  Similarity=0.259  Sum_probs=115.5

Q ss_pred             CCCcccccccCCCCCCceeeccC--CCceeeeeeeecc-CCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEE
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRN-CTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVIS  178 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~  178 (239)
                      .+|.+.+.+|+|++|.||+|...  +..+++|.+.... ......+.+.+|+.++++++|++++++++++...+..++||
T Consensus         2 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~i~~~~~~~~~~~~~~lv~   81 (267)
T cd08224           2 GNFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLDHPNVIKYLASFIENNELNIVL   81 (267)
T ss_pred             CceeeeeeeccCCceEEEEEEEcCCCCEEEEEEeecccccchhhHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEEE
Confidence            46788899999999999999884  5677778775432 22334567889999999999999999999999999999999


Q ss_pred             eeCCCCCHHHHhhcC--CCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        179 QYMAWGSLYALLHEG--AGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       179 e~~~~gsL~~~l~~~--~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||+++|+|.+++...  ....+++..+..++.|+++||.|||+.|  |+|+||||+||+++
T Consensus        82 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~--i~h~dl~p~nil~~  140 (267)
T cd08224          82 ELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALEHMHSKR--IMHRDIKPANVFIT  140 (267)
T ss_pred             ecCCCCCHHHHHHHhcccCCCcCHHHHHHHHHHHHHHHHHHHhCC--EecCCcChhhEEEC
Confidence            999999999998742  2235899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>KOG4236|consensus

Probab=99.90  E-value=1.4e-23  Score=167.18  Aligned_cols=129  Identities=13%  Similarity=0.257  Sum_probs=115.3

Q ss_pred             ccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEeeCCC
Q psy12580        106 LHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAW  183 (239)
Q Consensus       106 ~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~~~  183 (239)
                      ..+++|+|.||.||-|..  .|+.|++|++.+....+..+..+.+|+.+|+++.||.||.+--.|++++.++.|||-+.|
T Consensus       568 ~devLGSGQFG~VYgg~hRktGrdVAvKvIdKlrFp~kqesqlR~EVaILq~l~HPGiV~le~M~ET~ervFVVMEKl~G  647 (888)
T KOG4236|consen  568 ADEVLGSGQFGTVYGGKHRKTGRDVAVKVIDKLRFPTKQESQLRNEVAILQNLHHPGIVNLECMFETPERVFVVMEKLHG  647 (888)
T ss_pred             hHhhccCCcceeeecceecccCceeeeeeeecccCCCchHHHHHHHHHHHHhcCCCCeeEEEEeecCCceEEEEehhhcc
Confidence            346799999999999976  578999999988877777778899999999999999999999999999999999999955


Q ss_pred             CCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        184 GSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       184 gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                       +..+.|-......+++...+.+..||+.||.|||-.+  |||+||||+|||+.
T Consensus       648 -DMLEMILSsEkgRL~er~TkFlvtQIL~ALr~LH~kn--IvHCDLKPENVLLa  698 (888)
T KOG4236|consen  648 -DMLEMILSSEKGRLPERITKFLVTQILVALRYLHFKN--IVHCDLKPENVLLA  698 (888)
T ss_pred             -hHHHHHHHhhcccchHHHHHHHHHHHHHHHHHhhhcc--eeeccCCchheeec
Confidence             7777766544447999999999999999999999999  99999999999985

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=99.90  E-value=3.8e-23  Score=158.94  Aligned_cols=133  Identities=22%  Similarity=0.328  Sum_probs=113.8

Q ss_pred             CCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCC-CceEEEEe
Q psy12580        103 DLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSP-PDLVVISQ  179 (239)
Q Consensus       103 ~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~-~~~~lv~e  179 (239)
                      .|++.+.+|+|++|.||.+..  .+..+++|.+..........+.+..|+.++++++|+|++++++.+... ...++++|
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e   80 (257)
T cd08223           1 AYCFVRVVGKGSYGEVSLVRHRTDGKQYVIKKLNLRNASRRERKAAEQEAQLLSQLKHPNIVAYRESWEGEDGLLYIVMG   80 (257)
T ss_pred             CceEEEEecCCCCeEEEEEEEcCCCcEEEEEEEehhhcCHHHHHHHHHHHHHHHhCCCCCeeeeeeeecCCCCEEEEEec
Confidence            367888999999999999886  346677788865544445556788899999999999999999887644 46899999


Q ss_pred             eCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       180 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |+++++|.+++....+..+++.++..++.|++.||.|||+.+  ++|+||||+||+++
T Consensus        81 ~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~l~~~l~~lH~~~--i~H~di~p~nil~~  136 (257)
T cd08223          81 FCEGGDLYHKLKEQKGKLLPENQVVEWFVQIAMALQYLHEKH--ILHRDLKTQNVFLT  136 (257)
T ss_pred             ccCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCC--eeccCCCchhEEEe
Confidence            999999999998754446899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=99.90  E-value=3.5e-23  Score=159.06  Aligned_cols=132  Identities=18%  Similarity=0.320  Sum_probs=115.6

Q ss_pred             CcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEeeC
Q psy12580        104 LSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYM  181 (239)
Q Consensus       104 ~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~  181 (239)
                      |+..+.+|+|+||.+|.+..  .++.+++|.+............+.+|+.+++.++||||+++++++...+..++|+||+
T Consensus         2 y~~~~~lg~g~~g~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~   81 (256)
T cd08218           2 YVKVKKIGEGSFGKAILVKSKEDGKQYVIKEINISKMSPKEREESRKEVAVLSNMKHPNIVQYQESFEENGNLYIVMDYC   81 (256)
T ss_pred             ceEEEEeccCCceEEEEEEEcCCCCEEEEEEEEhHhCChHHHHHHHHHHHHHHhCCCCCeeeeEeeecCCCeEEEEEecC
Confidence            66788999999999998876  4567788887654444445567889999999999999999999999999999999999


Q ss_pred             CCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        182 AWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       182 ~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .+++|.+++.......+++.++..++.|++.||.|||+.+  ++|+||+|+|||++
T Consensus        82 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~--i~h~~l~~~nil~~  135 (256)
T cd08218          82 EGGDLYKKINAQRGVLFPEDQILDWFVQICLALKHVHDRK--ILHRDIKSQNIFLT  135 (256)
T ss_pred             CCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCC--EecCCCCHHHEEEc
Confidence            9999999998754445899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=99.90  E-value=2.9e-23  Score=161.99  Aligned_cols=131  Identities=18%  Similarity=0.311  Sum_probs=115.4

Q ss_pred             CCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEee
Q psy12580        103 DLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQY  180 (239)
Q Consensus       103 ~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~  180 (239)
                      +|.+.+.+|+|++|.||+|.+  .+..+++|.+............+.+|+.+++.++||||+++++++..+...++|+||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~   80 (286)
T cd07832           1 RYKILGRIGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQACQHPYVVKLLDVFPHGSGFVLVMEY   80 (286)
T ss_pred             CceEEeecccCCCcEEEEEEECCCCceEEEEEEEcccccchhhHHHHHHHHHHHhCCCCCCcceeeEEecCCeeEEEecc
Confidence            367788999999999999987  456788888876554444556788999999999999999999999999999999999


Q ss_pred             CCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        181 MAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       181 ~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      + +++|.+++.... ..+++..++.++.|+++||.|||+.+  ++|+||||+||+++
T Consensus        81 ~-~~~L~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~--i~H~dl~p~ni~~~  133 (286)
T cd07832          81 M-PSDLSEVLRDEE-RPLPEAQVKSYMRMLLKGVAYMHANG--IMHRDLKPANLLIS  133 (286)
T ss_pred             c-CCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCC--eecCCcCHHHEEEc
Confidence            9 999999997644 36899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=99.90  E-value=3.8e-23  Score=159.10  Aligned_cols=127  Identities=24%  Similarity=0.485  Sum_probs=110.7

Q ss_pred             ccccCCCCCCceeeccC-----CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEeeCC
Q psy12580        108 TKISSGPNGDTWRGRWQ-----KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMA  182 (239)
Q Consensus       108 ~~ig~g~~g~v~~~~~~-----~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~~  182 (239)
                      +.||+|+||.||++...     +..+++|.+....... ..+.+..|+..+..++|+|++++++++......+++|||++
T Consensus         1 ~~ig~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~-~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~   79 (262)
T cd00192           1 KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEE-ERKDFLKEARVMKKLGHPNVVRLLGVCTEEEPLYLVLEYME   79 (262)
T ss_pred             CccccCCceEEEEEEEecCCCCCceEEeEeeccccchh-HHHHHHHHHHHHhhcCCCChheeeeeecCCCceEEEEEecc
Confidence            36899999999999885     5567778776543322 45778899999999999999999999999889999999999


Q ss_pred             CCCHHHHhhcCC-------CcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        183 WGSLYALLHEGA-------GIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       183 ~gsL~~~l~~~~-------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +++|.+++....       ...+++..+..++.|++.||+|||+.+  ++||||||+||+++
T Consensus        80 ~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~--i~H~di~p~nili~  139 (262)
T cd00192          80 GGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLASKK--FVHRDLAARNCLVG  139 (262)
T ss_pred             CCcHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHHcCC--cccCccCcceEEEC
Confidence            999999998751       236899999999999999999999999  99999999999987

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=99.90  E-value=5.6e-23  Score=157.37  Aligned_cols=126  Identities=21%  Similarity=0.400  Sum_probs=108.1

Q ss_pred             ccccCCCCCCceeeccCC-CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEeeCCCCCH
Q psy12580        108 TKISSGPNGDTWRGRWQK-NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSL  186 (239)
Q Consensus       108 ~~ig~g~~g~v~~~~~~~-~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~~~gsL  186 (239)
                      +.||+|+||.||+|...+ ..+++|.+... ........+.+|+.+++.++||||+++++++...+..++||||+++++|
T Consensus         1 ~~ig~g~~g~vy~~~~~~~~~~a~K~~~~~-~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   79 (250)
T cd05085           1 ELLGKGNFGEVFKGTLKDKTPVAVKTCKED-LPQELKIKFLSEARILKQYDHPNIVKLIGVCTQRQPIYIVMELVPGGDF   79 (250)
T ss_pred             CccCCCCCceEEEEEecCCcEEEEEecCCc-CCHHHHHHHHHHHHHHHhCCCCCcCeEEEEEecCCccEEEEECCCCCcH
Confidence            368999999999998744 55666766533 2333445688999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        187 YALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       187 ~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .+++..... .+++..+..++.|++.||.|+|+.+  ++||||||+||+++
T Consensus        80 ~~~~~~~~~-~~~~~~~~~~~~~i~~~l~~lH~~~--~~H~dl~p~nili~  127 (250)
T cd05085          80 LSFLRKKKD-ELKTKQLVKFALDAAAGMAYLESKN--CIHRDLAARNCLVG  127 (250)
T ss_pred             HHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHhCC--eeecccChheEEEc
Confidence            999976542 5789999999999999999999999  99999999999986

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.90  E-value=4.8e-23  Score=160.68  Aligned_cols=128  Identities=25%  Similarity=0.376  Sum_probs=107.4

Q ss_pred             CcccccccCCCCCCceeecc------CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCC--CceE
Q psy12580        104 LSLHTKISSGPNGDTWRGRW------QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSP--PDLV  175 (239)
Q Consensus       104 ~~~~~~ig~g~~g~v~~~~~------~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~--~~~~  175 (239)
                      +...+.||+|+||.||.+.+      .+..+++|.+.... .......+.+|+.+++.++||||+++++++...  ...+
T Consensus         6 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~   84 (283)
T cd05080           6 LKKIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKREC-GQQNTSGWKKEINILKTLYHENIVKYKGCCSEQGGKGLQ   84 (283)
T ss_pred             ceeceecccCCCcEEEEeeEccccCCCCceEEEEEecccc-ChHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCceEE
Confidence            36778899999999987653      23456778775432 233446788999999999999999999987653  3689


Q ss_pred             EEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        176 VISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       176 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ++|||+++|+|.+++...   .+++.++..++.|++.||.|||+.+  |+||||||+|||++
T Consensus        85 lv~e~~~~~~l~~~~~~~---~l~~~~~~~i~~~l~~~l~~lH~~~--i~H~dlkp~Nili~  141 (283)
T cd05080          85 LIMEYVPLGSLRDYLPKH---KLNLAQLLLFAQQICEGMAYLHSQH--YIHRDLAARNVLLD  141 (283)
T ss_pred             EEecCCCCCCHHHHHHHc---CCCHHHHHHHHHHHHHHHHHHHHCC--eeccccChheEEEc
Confidence            999999999999999764   3899999999999999999999999  99999999999986

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=99.90  E-value=3.9e-23  Score=160.87  Aligned_cols=135  Identities=24%  Similarity=0.381  Sum_probs=114.7

Q ss_pred             CCCCCcccccccCCCCCCceeeccC-------CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCC
Q psy12580        100 SLNDLSLHTKISSGPNGDTWRGRWQ-------KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP  172 (239)
Q Consensus       100 ~~~~~~~~~~ig~g~~g~v~~~~~~-------~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~  172 (239)
                      ...+|.+.+.+|+|+||.||+|...       +..+++|.+.... .....+.+.+|+.+++.++||||+++++++....
T Consensus         3 ~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~   81 (280)
T cd05049           3 QRDTIVLKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETA-SNDARKDFEREAELLTNFQHENIVKFYGVCTEGD   81 (280)
T ss_pred             ChHHhhHHhhccccCCceEeeeeeccccCcCCcceEEEEeecccC-CHHHHHHHHHHHHHHHhcCCCCchheeeEEecCC
Confidence            3466888899999999999999763       2456777775432 2224567899999999999999999999999999


Q ss_pred             ceEEEEeeCCCCCHHHHhhcCC------------CcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        173 DLVVISQYMAWGSLYALLHEGA------------GIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       173 ~~~lv~e~~~~gsL~~~l~~~~------------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ..++||||+++++|.+++...+            ...+++..+..++.|++.||.|||+.+  ++||||||+||+++
T Consensus        82 ~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~--i~h~dlkp~nili~  156 (280)
T cd05049          82 PPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLASQH--FVHRDLATRNCLVG  156 (280)
T ss_pred             CeEEEEecCCCCCHHHHHHhcCCchhhhcccccccccccHHHHHHHHHHHHHHHHHHhhCC--eeccccccceEEEc
Confidence            9999999999999999997542            134788999999999999999999999  99999999999986

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=99.90  E-value=2.4e-23  Score=160.92  Aligned_cols=134  Identities=14%  Similarity=0.276  Sum_probs=114.9

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccC-CchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEE
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNC-TPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVIS  178 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~  178 (239)
                      ++|.+.+.||+|++|.||++..  .+..+++|.+..... .......+.+|+.+++.+.||||+++++++..++..+++|
T Consensus         2 ~~y~~~~~ig~g~~g~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~   81 (267)
T cd08229           2 ANFRIEKKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVL   81 (267)
T ss_pred             chhhhhhhhcccCCeEEEEEeecCCCceEEEEeeeehhhhhHHHHHHHHHHHHHHHHccCCchhhhhheeEeCCeEEEEE
Confidence            4677889999999999999986  557778887754332 2334467889999999999999999999999999999999


Q ss_pred             eeCCCCCHHHHhhcC--CCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        179 QYMAWGSLYALLHEG--AGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       179 e~~~~gsL~~~l~~~--~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||+++++|.+++...  ....+++..++.++.|++.||.|||+.+  ++|+||||+||+++
T Consensus        82 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~--i~H~dl~p~nili~  140 (267)
T cd08229          82 ELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSALEHMHSRR--VMHRDIKPANVFIT  140 (267)
T ss_pred             EecCCCCHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCCHHHEEEc
Confidence            999999999998742  2235899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=99.90  E-value=5.9e-23  Score=161.20  Aligned_cols=134  Identities=21%  Similarity=0.378  Sum_probs=111.5

Q ss_pred             CCCCcccccccCCCCCCceeeccCC------------------CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCcee
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRWQK------------------NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVL  162 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~~~------------------~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv  162 (239)
                      .++|++.+.||+|+||.||++.+.+                  ..+++|++... ........+.+|+.+++.++|+||+
T Consensus         4 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~-~~~~~~~~~~~E~~~l~~l~~~~i~   82 (296)
T cd05095           4 RKRLTFKEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLRED-ANKNARNDFLKEIKIMSRLKDPNII   82 (296)
T ss_pred             hhhceeeeeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEecccc-CCHHHHHHHHHHHHHHHhCCCCCcc
Confidence            4568889999999999999986432                  13455665432 2233456788999999999999999


Q ss_pred             eeeeeeeCCCceEEEEeeCCCCCHHHHhhcCCC---------cccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCcc
Q psy12580        163 PVIGCVNSPPDLVVISQYMAWGSLYALLHEGAG---------IVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRH  233 (239)
Q Consensus       163 ~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~---------~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~N  233 (239)
                      ++++++...+..+++|||+.+|+|.+++.....         ..+++.++..++.|++.||+|||+.+  ++||||||+|
T Consensus        83 ~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~--i~H~dlkp~N  160 (296)
T cd05095          83 RLLAVCITSDPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMKYLSSLN--FVHRDLATRN  160 (296)
T ss_pred             eEEEEEecCCccEEEEEeCCCCcHHHHHHhcCcccccccccccccCHHHHHHHHHHHHHHHHHHHHCC--eecccCChhe
Confidence            999999999999999999999999999976431         23678899999999999999999999  9999999999


Q ss_pred             ceee
Q psy12580        234 VMVY  237 (239)
Q Consensus       234 ill~  237 (239)
                      ||++
T Consensus       161 ili~  164 (296)
T cd05095         161 CLVG  164 (296)
T ss_pred             EEEc
Confidence            9986

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=99.90  E-value=2.7e-23  Score=160.72  Aligned_cols=131  Identities=18%  Similarity=0.269  Sum_probs=114.1

Q ss_pred             CCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEE
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVIS  178 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~  178 (239)
                      .++|...+.||+|+||.||+|..  .+..+++|.+....  ......+.+|+.+++.++||||+++++.+...+..++||
T Consensus         8 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~--~~~~~~~~~e~~~~~~l~h~~ii~~~~~~~~~~~~~lv~   85 (267)
T cd06645           8 QEDFELIQRIGSGTYGDVYKARNVNTGELAAIKVIKLEP--GEDFAVVQQEIIMMKDCKHSNIVAYFGSYLRRDKLWICM   85 (267)
T ss_pred             HHHHHHHHHhCCCCCeEEEEEEEcCCCcEEEEEEEecCc--hhHHHHHHHHHHHHHhCCCCCeeeEEEEEEeCCEEEEEE
Confidence            35788889999999999999987  34666777775432  223345778999999999999999999999999999999


Q ss_pred             eeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        179 QYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       179 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||+++++|.+++....  .+++.++..++.|++.||.|||+.|  ++|+||||+||+++
T Consensus        86 e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~i~~~l~~lH~~~--i~H~dlkp~nili~  140 (267)
T cd06645          86 EFCGGGSLQDIYHVTG--PLSESQIAYVSRETLQGLYYLHSKG--KMHRDIKGANILLT  140 (267)
T ss_pred             eccCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCCHHHEEEC
Confidence            9999999999998765  6899999999999999999999999  99999999999986

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=99.90  E-value=5.1e-23  Score=158.28  Aligned_cols=124  Identities=21%  Similarity=0.368  Sum_probs=106.4

Q ss_pred             ccccCCCCCCceeeccCC-----CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEeeCC
Q psy12580        108 TKISSGPNGDTWRGRWQK-----NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMA  182 (239)
Q Consensus       108 ~~ig~g~~g~v~~~~~~~-----~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~~  182 (239)
                      +.||+|+||.||+|.+..     ..+++|.+...... ...+.+..|+.+++.+.||||+++++++. .+..++||||++
T Consensus         1 ~~ig~G~~g~v~~~~~~~~~~~~~~~~iK~~~~~~~~-~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~~v~e~~~   78 (257)
T cd05060           1 KELGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIA-AGKKEFLREASVMAQLDHPCIVRLIGVCK-GEPLMLVMELAP   78 (257)
T ss_pred             CccCccCceeEEEeEeeccCCCcceEEEEecccccch-HHHHHHHHHHHHHHhcCCCCeeeEEEEEc-CCceEEEEEeCC
Confidence            368999999999998732     35666777544332 34567889999999999999999999876 446899999999


Q ss_pred             CCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        183 WGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       183 ~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +|+|.+++....  .+++..+..++.|++.||+|||+.+  ++|+||||+|||++
T Consensus        79 ~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lh~~~--i~H~di~p~nili~  129 (257)
T cd05060          79 LGPLLKYLKKRR--EIPVSDLKELAHQVAMGMAYLESKH--FVHRDLAARNVLLV  129 (257)
T ss_pred             CCcHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHHhhcC--eeccCcccceEEEc
Confidence            999999998766  6899999999999999999999999  99999999999986

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=99.90  E-value=5.7e-23  Score=158.98  Aligned_cols=135  Identities=24%  Similarity=0.368  Sum_probs=113.8

Q ss_pred             CCCCCCcccccccCCCCCCceeeccC--CC---ceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCc
Q psy12580         99 ISLNDLSLHTKISSGPNGDTWRGRWQ--KN---DIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPD  173 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g~~g~v~~~~~~--~~---~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~  173 (239)
                      +...+|+..+.+|+|+||.||+|...  ++   .+++|.+... ......+.+..|+.++..++|||++++.+++...+.
T Consensus         2 i~~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~-~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   80 (268)
T cd05063           2 IHPSHITKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPG-YTEKQRQDFLSEASIMGQFSHHNIIRLEGVVTKFKP   80 (268)
T ss_pred             CChHHceEeeEecCCCCccEEEEEEecCCCCceEEEEEecccc-CCHHHHHHHHHHHHHHhcCCCCCeeEEEEEEccCCC
Confidence            34457788899999999999999863  22   3555665432 223345678899999999999999999999999999


Q ss_pred             eEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        174 LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .++||||+++++|.+++.... ..+++..+..++.|++.||+|||+.+  ++||||||+||+++
T Consensus        81 ~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~l~~al~~lH~~~--i~H~dlkp~Nili~  141 (268)
T cd05063          81 AMIITEYMENGALDKYLRDHD-GEFSSYQLVGMLRGIAAGMKYLSDMN--YVHRDLAARNILVN  141 (268)
T ss_pred             cEEEEEcCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCC--eeccccchhhEEEc
Confidence            999999999999999997644 25899999999999999999999999  99999999999986

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=99.90  E-value=4.7e-23  Score=164.45  Aligned_cols=138  Identities=23%  Similarity=0.328  Sum_probs=114.1

Q ss_pred             cCCCCCCCcccccccCCCCCCceeeccCC---------CceeeeeeeeccCCchHHHHHHHHHhHhhhc-CCCceeeeee
Q psy12580         97 KGISLNDLSLHTKISSGPNGDTWRGRWQK---------NDIVAKILAVRNCTPRVSRDFNEEFPKLRIF-SHPNVLPVIG  166 (239)
Q Consensus        97 ~~~~~~~~~~~~~ig~g~~g~v~~~~~~~---------~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~l~~  166 (239)
                      +.+....|.+.+.||+|+||.||.+.+.+         ..+++|.+... ......+.+.+|+.+++++ +||||+++++
T Consensus         7 ~~~~~~~~~i~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~   85 (334)
T cd05100           7 WELSRTRLTLGKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDD-ATDKDLSDLVSEMEMMKMIGKHKNIINLLG   85 (334)
T ss_pred             cccCHhHeeecceeccccCCcEEEEEEeccCCccCCcceeEEEEEcccc-cCHHHHHHHHHHHHHHHhhcCCCCeeeeeE
Confidence            44555678889999999999999997521         13566766532 2233456788999999999 7999999999


Q ss_pred             eeeCCCceEEEEeeCCCCCHHHHhhcCC--------------CcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCc
Q psy12580        167 CVNSPPDLVVISQYMAWGSLYALLHEGA--------------GIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSR  232 (239)
Q Consensus       167 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~--------------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~  232 (239)
                      ++...+..++++||+++|+|.+++....              ...+++.++..++.|++.||.|||+.+  ++||||||+
T Consensus        86 ~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~g--ivH~dlkp~  163 (334)
T cd05100          86 ACTQDGPLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLASQK--CIHRDLAAR  163 (334)
T ss_pred             EEccCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHCC--eeccccccc
Confidence            9999889999999999999999997532              234788899999999999999999999  999999999


Q ss_pred             cceee
Q psy12580        233 HVMVY  237 (239)
Q Consensus       233 Nill~  237 (239)
                      |||++
T Consensus       164 Nill~  168 (334)
T cd05100         164 NVLVT  168 (334)
T ss_pred             eEEEc
Confidence            99986

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=99.90  E-value=6.8e-23  Score=157.66  Aligned_cols=124  Identities=19%  Similarity=0.347  Sum_probs=104.3

Q ss_pred             cccCCCCCCceeeccC--C--CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEeeCCCC
Q psy12580        109 KISSGPNGDTWRGRWQ--K--NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWG  184 (239)
Q Consensus       109 ~ig~g~~g~v~~~~~~--~--~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~~~g  184 (239)
                      .||+|+||.||+|.+.  +  ..+++|++... ......+.+.+|+.++++++||||+++++++.. +..++||||+++|
T Consensus         2 ~ig~G~~g~v~~~~~~~~~~~~~vavk~~~~~-~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~-~~~~lv~e~~~~~   79 (257)
T cd05115           2 ELGSGNFGCVKKGVYKMRKKQIDVAIKVLKNE-NEKSVRDEMMREAEIMHQLDNPYIVRMIGVCEA-EALMLVMEMASGG   79 (257)
T ss_pred             ccCCCCcccEEEEEEecCCCceeEEEEEcccc-cChHHHHHHHHHHHHHHhcCCCCeEEEEEEEcC-CCeEEEEEeCCCC
Confidence            3899999999999763  2  24666776543 223344678899999999999999999998864 4689999999999


Q ss_pred             CHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        185 SLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       185 sL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +|.+++.... ..+++..++.++.|++.||.|||+.+  ++||||||+|||++
T Consensus        80 ~L~~~l~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~--i~H~dlkp~nil~~  129 (257)
T cd05115          80 PLNKFLSGKK-DEITVSNVVELMHQVSMGMKYLEGKN--FVHRDLAARNVLLV  129 (257)
T ss_pred             CHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHhcC--eeecccchheEEEc
Confidence            9999997543 25899999999999999999999999  99999999999986

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=99.90  E-value=3.1e-23  Score=162.85  Aligned_cols=130  Identities=16%  Similarity=0.277  Sum_probs=112.4

Q ss_pred             CcccccccCCCCCCceeecc--CCCceeeeeeeeccCC---chHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEE
Q psy12580        104 LSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCT---PRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVIS  178 (239)
Q Consensus       104 ~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~---~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~  178 (239)
                      |+..+.||+|++|.||+|..  .+..+++|.+......   ......+..|+.+++.++|+||+++++++...+..++||
T Consensus         2 y~~~~~lg~g~~~~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~   81 (298)
T cd07841           2 YEKGKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGLLDVFGHKSNINLVF   81 (298)
T ss_pred             ceeeeeeeeccccEEEEEEECCCCcEEEEEEEeccccccccchhhHHHHHHHHHHhhcCCCCChhhhheeecCCEEEEEE
Confidence            56678899999999999987  3567888888654332   233456778999999999999999999999988999999


Q ss_pred             eeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        179 QYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       179 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||+ +|+|.+++.... ..+++..+..++.|+++||.|||+.+  |+|+||||+|||++
T Consensus        82 e~~-~~~L~~~i~~~~-~~~~~~~~~~~~~qi~~al~~lH~~~--i~H~dl~p~nill~  136 (298)
T cd07841          82 EFM-ETDLEKVIKDKS-IVLTPADIKSYMLMTLRGLEYLHSNW--ILHRDLKPNNLLIA  136 (298)
T ss_pred             ccc-CCCHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHHhCC--eeecCCChhhEEEc
Confidence            999 889999998754 35899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.90  E-value=4.9e-23  Score=160.53  Aligned_cols=132  Identities=23%  Similarity=0.382  Sum_probs=113.4

Q ss_pred             CCCcccccccCCCCCCceeeccC------CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeC--CCc
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRWQ------KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNS--PPD  173 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~~------~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~--~~~  173 (239)
                      .++...+.||+|+||.||++.+.      +..+++|.+...... .....+.+|+..++.+.||||+++++++..  ...
T Consensus         4 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~-~~~~~~~~ei~~l~~l~~~~i~~~~~~~~~~~~~~   82 (284)
T cd05038           4 RHLKFIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEE-QHRSDFEREIEILRTLDHENIVKYKGVCEKPGGRS   82 (284)
T ss_pred             hhchhheeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccch-HHHHHHHHHHHHHHhCCCCChheEEeeeecCCCCc
Confidence            56777889999999999999863      356777877654332 345778999999999999999999998877  557


Q ss_pred             eEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        174 LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .+++|||+++++|.+++..... .+++..+..++.|++.||+|||+.+  ++|+||||+||+++
T Consensus        83 ~~lv~e~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~l~~aL~~lH~~~--i~H~dl~p~nil~~  143 (284)
T cd05038          83 LRLIMEYLPSGSLRDYLQRHRD-QINLKRLLLFSSQICKGMDYLGSQR--YIHRDLAARNILVE  143 (284)
T ss_pred             eEEEEecCCCCCHHHHHHhCcc-ccCHHHHHHHHHHHHHHHHHHHhCC--eecCCCCHHhEEEc
Confidence            9999999999999999987543 5899999999999999999999999  99999999999986

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=99.90  E-value=6.3e-23  Score=160.63  Aligned_cols=134  Identities=22%  Similarity=0.340  Sum_probs=111.6

Q ss_pred             CCCCCcccccccCCCCCCceeeccCC-------CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCC
Q psy12580        100 SLNDLSLHTKISSGPNGDTWRGRWQK-------NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP  172 (239)
Q Consensus       100 ~~~~~~~~~~ig~g~~g~v~~~~~~~-------~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~  172 (239)
                      ...+|.+.+.||+|+||.||.+...+       ..+++|.+..  ......+.+.+|+.+++.++||||+++++++...+
T Consensus         3 ~~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~--~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   80 (291)
T cd05094           3 KRRDIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKD--PTLAARKDFQREAELLTNLQHEHIVKFYGVCGDGD   80 (291)
T ss_pred             chHHeEEeeeecccCCCeEEEeEeeccCCCCcceeeEEEecCC--ccHHHHHHHHHHHHHHhcCCCCCcceEEEEEccCC
Confidence            44667888999999999999997522       2244455432  22334467889999999999999999999999999


Q ss_pred             ceEEEEeeCCCCCHHHHhhcCC--------------CcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        173 DLVVISQYMAWGSLYALLHEGA--------------GIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       173 ~~~lv~e~~~~gsL~~~l~~~~--------------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ..++||||+++++|.+++....              ...+++..++.++.|++.||.|||+.+  |+||||||+|||++
T Consensus        81 ~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~--i~H~dlkp~Nil~~  157 (291)
T cd05094          81 PLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLASQH--FVHRDLATRNCLVG  157 (291)
T ss_pred             ceEEEEecCCCCcHHHHHHhcCcccccccccccccCcCCCCHHHHHHHHHHHHHHHHHHHhCC--eeecccCcceEEEc
Confidence            9999999999999999997542              124789999999999999999999999  99999999999986

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=99.90  E-value=6.2e-23  Score=158.54  Aligned_cols=132  Identities=15%  Similarity=0.266  Sum_probs=111.8

Q ss_pred             CCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCC---chHHHHHHHHHhHhhhcCCCceeeeeeeeeCC--Cce
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCT---PRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSP--PDL  174 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~---~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~--~~~  174 (239)
                      .+|.+.+.+|+|+||.||.+...  +..+++|.+......   ....+.+.+|+.+++.+.||||+++++++...  ..+
T Consensus         2 ~~~~~~~~l~~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~   81 (265)
T cd06652           2 TNWRLGKLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIVQYYGCLRDPMERTL   81 (265)
T ss_pred             CcceEeeEEecCCceEEEEEEEcCCCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcCCCCeeeEEeEeccCCCceE
Confidence            56788899999999999999863  466777877543221   23346788899999999999999999988664  468


Q ss_pred             EEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        175 VVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       175 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +++|||+++++|.+++....  .+++..+..++.|++.||.|||+.+  ++|+||||+||+++
T Consensus        82 ~~v~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~l~~~l~~lH~~~--i~H~dl~p~nil~~  140 (265)
T cd06652          82 SIFMEHMPGGSIKDQLKSYG--ALTENVTRKYTRQILEGVSYLHSNM--IVHRDIKGANILRD  140 (265)
T ss_pred             EEEEEecCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHhCC--EecCCCCHHHEEec
Confidence            89999999999999998765  5789999999999999999999999  99999999999986

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=99.90  E-value=7.3e-23  Score=159.57  Aligned_cols=129  Identities=16%  Similarity=0.269  Sum_probs=109.3

Q ss_pred             CcccccccCCCCCCceeeccCCC--ceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEeeC
Q psy12580        104 LSLHTKISSGPNGDTWRGRWQKN--DIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYM  181 (239)
Q Consensus       104 ~~~~~~ig~g~~g~v~~~~~~~~--~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~  181 (239)
                      |++.+.||+|+||.||++...+.  .+++|.+...  .......+.+|+.+++.+.|||++++++++...+..++|+||+
T Consensus         7 ~~i~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~--~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~~v~e~~   84 (282)
T cd06643           7 WEIIGELGDGAFGKVYKAQNKETGVLAAAKVIDTK--SEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFC   84 (282)
T ss_pred             HHHHhhcccCCCeEEEEEEECCCCeEEEEEEeCCC--CHHHHHHHHHHHHHHHHCCCCCeeeEEEEEeeCCEEEEEEEec
Confidence            46778899999999999988543  3344555322  2334567888999999999999999999999999999999999


Q ss_pred             CCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        182 AWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       182 ~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ++++|..++.... ..+++..+..++.|+++||.|||+.+  ++||||||+|||++
T Consensus        85 ~~~~l~~~~~~~~-~~l~~~~~~~~~~qi~~~L~~LH~~~--i~H~dlkp~nili~  137 (282)
T cd06643          85 AGGAVDAVMLELE-RPLTEPQIRVVCKQTLEALNYLHENK--IIHRDLKAGNILFT  137 (282)
T ss_pred             CCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCC--eeecCCCcccEEEc
Confidence            9999999886533 26899999999999999999999999  99999999999986

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=99.90  E-value=8.8e-23  Score=158.97  Aligned_cols=135  Identities=24%  Similarity=0.383  Sum_probs=112.7

Q ss_pred             CCCCCCcccccccCCCCCCceeeccC-------CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCC
Q psy12580         99 ISLNDLSLHTKISSGPNGDTWRGRWQ-------KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSP  171 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g~~g~v~~~~~~-------~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~  171 (239)
                      +...++...+.+|+|+||.||++...       +..+++|.+..  ........+.+|+.+++.++|+||+++++++...
T Consensus         2 ~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~--~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~   79 (280)
T cd05092           2 IKRRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKE--ASESARQDFQREAELLTVLQHQHIVRFYGVCTEG   79 (280)
T ss_pred             CChHhceeccccCCccCCeEEEeEEecCCCCCCceEEEEEecCc--CCHHHHHHHHHHHHHHhcCCCCCCceEEEEEecC
Confidence            34567888899999999999998631       22344555432  2344456789999999999999999999999998


Q ss_pred             CceEEEEeeCCCCCHHHHhhcCCC-------------cccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        172 PDLVVISQYMAWGSLYALLHEGAG-------------IVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       172 ~~~~lv~e~~~~gsL~~~l~~~~~-------------~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +..+++|||+++|+|.+++.....             ..+++..++.++.|++.||+|||+.+  ++||||||+|||++
T Consensus        80 ~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~~--i~H~dlkp~nil~~  156 (280)
T cd05092          80 RPLLMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVYLASLH--FVHRDLATRNCLVG  156 (280)
T ss_pred             CceEEEEecCCCCCHHHHHHhcCcchhhhcccccCCccccCHHHHHHHHHHHHHHHHHHHHCC--eecccccHhhEEEc
Confidence            999999999999999999976431             24789999999999999999999999  99999999999986

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>KOG4257|consensus

Probab=99.90  E-value=2e-23  Score=169.07  Aligned_cols=137  Identities=19%  Similarity=0.414  Sum_probs=116.7

Q ss_pred             ccCCCCCCCcccccccCCCCCCceeeccC----CCc--eeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeee
Q psy12580         96 HKGISLNDLSLHTKISSGPNGDTWRGRWQ----KND--IVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVN  169 (239)
Q Consensus        96 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~~----~~~--~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~  169 (239)
                      ..++..+.+.+.+.||.|.||.||+|.+.    |..  |++|..+. .+++...+.|..|..+|+++.||||++++|+|.
T Consensus       383 nyel~Re~Itl~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~-d~t~d~tekflqEa~iMrnfdHphIikLIGv~~  461 (974)
T KOG4257|consen  383 NYELRRELITLKRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKT-DCTPDDTEKFLQEASIMRNFDHPHIIKLIGVCV  461 (974)
T ss_pred             cceeehhhccHHHhhcCCcccceeeeEecccccCcceeeeeehhcc-CCChhhHHHHHHHHHHHHhCCCcchhheeeeee
Confidence            34456667778889999999999999983    222  44455543 345556788999999999999999999999997


Q ss_pred             CCCceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        170 SPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       170 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .. +.|||||+++.|.|.+|++.+.. .++......+++||+.||.|||+.+  .|||||..+|||+.
T Consensus       462 e~-P~WivmEL~~~GELr~yLq~nk~-sL~l~tL~ly~~Qi~talaYLeSkr--fVHRDIAaRNiLVs  525 (974)
T KOG4257|consen  462 EQ-PMWIVMELAPLGELREYLQQNKD-SLPLRTLTLYCYQICTALAYLESKR--FVHRDIAARNILVS  525 (974)
T ss_pred             cc-ceeEEEecccchhHHHHHHhccc-cchHHHHHHHHHHHHHHHHHHHhhc--hhhhhhhhhheeec
Confidence            66 59999999999999999998763 6999999999999999999999998  99999999999985

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=99.90  E-value=4.1e-23  Score=162.49  Aligned_cols=132  Identities=15%  Similarity=0.312  Sum_probs=112.6

Q ss_pred             CCCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEE
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVIS  178 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~  178 (239)
                      .++|...+.||+|+||.||+|...  +..+++|.+..... ......+.+|+.+++.++||||+++++++...+..++||
T Consensus         5 ~~~y~~~~~lg~g~~g~vy~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~E~~~l~~l~h~nI~~~~~~~~~~~~~~lv~   83 (301)
T cd07873           5 LETYIKLDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHE-EGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVF   83 (301)
T ss_pred             ccceEEeeEeccCcCEEEEEEEEcCCCcEEEEEEEecccc-cCchhHHHHHHHHHHhcCCCCcceEEEEEecCCeEEEEE
Confidence            467888899999999999999873  46677787754332 222345678999999999999999999999999999999


Q ss_pred             eeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        179 QYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       179 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||+. ++|.+++..... .+++..+..++.|+++||+|||+.+  |+|+||||+|||++
T Consensus        84 e~~~-~~l~~~l~~~~~-~~~~~~~~~~~~qi~~aL~~lH~~~--i~H~dlkp~Nil~~  138 (301)
T cd07873          84 EYLD-KDLKQYLDDCGN-SINMHNVKLFLFQLLRGLNYCHRRK--VLHRDLKPQNLLIN  138 (301)
T ss_pred             eccc-cCHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHhCC--eeCCCCCHHHEEEC
Confidence            9997 599999876542 5899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=99.90  E-value=6.7e-23  Score=159.57  Aligned_cols=133  Identities=18%  Similarity=0.370  Sum_probs=108.0

Q ss_pred             CCCCCcccccccCCCCCCceeeccC--CCc----eeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCc
Q psy12580        100 SLNDLSLHTKISSGPNGDTWRGRWQ--KND----IVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPD  173 (239)
Q Consensus       100 ~~~~~~~~~~ig~g~~g~v~~~~~~--~~~----~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~  173 (239)
                      ...+|...+.||+|+||.||+|.+.  +..    +++|.+... .......++..|+..+..+.||||+++++++.. ..
T Consensus         5 ~~~~~~~~~~lg~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~-~~~~~~~~~~~~~~~l~~l~h~~iv~~~~~~~~-~~   82 (279)
T cd05111           5 KETELRKLKLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDR-SGRQTFQEITDHMLAMGSLDHAYIVRLLGICPG-AS   82 (279)
T ss_pred             CHhhceeccccCccCCcceEEEEEcCCCCceeeEEEEeecccc-cchHHHHHHHHHHHHHhcCCCCCcceEEEEECC-Cc
Confidence            3467788899999999999999873  332    444554321 222334567778888899999999999998754 45


Q ss_pred             eEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        174 LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .++++||+++|+|.+++....+ .+++..+..++.|++.||.|||+.+  ++||||||+|||++
T Consensus        83 ~~~i~e~~~~gsL~~~l~~~~~-~~~~~~~~~i~~qi~~~l~~lH~~~--iiH~dlkp~nili~  143 (279)
T cd05111          83 LQLVTQLSPLGSLLDHVRQHRD-SLDPQRLLNWCVQIAKGMYYLEEHR--MVHRNLAARNILLK  143 (279)
T ss_pred             cEEEEEeCCCCcHHHHHHhccc-CCCHHHHHHHHHHHHHHHHHHHHCC--EeccccCcceEEEc
Confidence            7899999999999999986542 5899999999999999999999999  99999999999986

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=99.90  E-value=1.8e-23  Score=167.38  Aligned_cols=131  Identities=17%  Similarity=0.216  Sum_probs=109.2

Q ss_pred             CCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCC------C
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSP------P  172 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~------~  172 (239)
                      .+.|...+.||+|+||.||+|..  .+..+++|.+............+.+|+.+++.++||||+++++++...      .
T Consensus        14 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   93 (343)
T cd07878          14 PERYQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQSLIHARRTYRELRLLKHMKHENVIGLLDVFTPATSIENFN   93 (343)
T ss_pred             hhhhhhheecccCCCeEEEEEEECCCCCEEEEEEeCchhhhhHHHHHHHHHHHHHHhcCCCchhhhhhhhcccccccccC
Confidence            35688889999999999999976  345677888765433333345677899999999999999999887543      3


Q ss_pred             ceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        173 DLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       173 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ..++++|++ +++|.++++..   .+++..+..++.|++.||.|||+.+  |+||||||+|||++
T Consensus        94 ~~~~~~~~~-~~~l~~~~~~~---~l~~~~~~~i~~qi~~aL~~LH~~~--ivHrdikp~Nil~~  152 (343)
T cd07878          94 EVYLVTNLM-GADLNNIVKCQ---KLSDEHVQFLIYQLLRGLKYIHSAG--IIHRDLKPSNVAVN  152 (343)
T ss_pred             cEEEEeecC-CCCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHCC--eecccCChhhEEEC
Confidence            579999998 67999888654   4899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=99.90  E-value=7.4e-23  Score=161.93  Aligned_cols=138  Identities=25%  Similarity=0.343  Sum_probs=114.2

Q ss_pred             cCCCCCCCcccccccCCCCCCceeeccC---------CCceeeeeeeeccCCchHHHHHHHHHhHhhhc-CCCceeeeee
Q psy12580         97 KGISLNDLSLHTKISSGPNGDTWRGRWQ---------KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIF-SHPNVLPVIG  166 (239)
Q Consensus        97 ~~~~~~~~~~~~~ig~g~~g~v~~~~~~---------~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~l~~  166 (239)
                      +.+...++.+.+.||+|+||.||++...         ...+++|.+.... .......+..|+.++..+ +||||+++++
T Consensus         7 ~~~~~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~-~~~~~~~~~~E~~~l~~l~~h~~iv~~~~   85 (314)
T cd05099           7 WEFPRDRLVLGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNA-TDKDLADLISEMELMKLIGKHKNIINLLG   85 (314)
T ss_pred             ccccHHHeeeeeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCC-ChHHHHHHHHHHHHHHhccCCCCeeeEEE
Confidence            3455577888999999999999998642         2345667665332 233456688899999999 6999999999


Q ss_pred             eeeCCCceEEEEeeCCCCCHHHHhhcCC--------------CcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCc
Q psy12580        167 CVNSPPDLVVISQYMAWGSLYALLHEGA--------------GIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSR  232 (239)
Q Consensus       167 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~--------------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~  232 (239)
                      ++...+..+++|||+.+|+|.+++....              ...+++..+..++.|++.||.|||+.|  ++||||||+
T Consensus        86 ~~~~~~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~g--i~H~dlkp~  163 (314)
T cd05099          86 VCTQEGPLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLESRR--CIHRDLAAR  163 (314)
T ss_pred             EEccCCceEEEEecCCCCcHHHHHHhcCCCcccccccccCCcccccCHHHHHHHHHHHHHHHHHHHHCC--eeeccccce
Confidence            9998889999999999999999997632              135889999999999999999999999  999999999


Q ss_pred             cceee
Q psy12580        233 HVMVY  237 (239)
Q Consensus       233 Nill~  237 (239)
                      |||++
T Consensus       164 Nill~  168 (314)
T cd05099         164 NVLVT  168 (314)
T ss_pred             eEEEc
Confidence            99986

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=99.90  E-value=8.4e-23  Score=156.98  Aligned_cols=130  Identities=16%  Similarity=0.267  Sum_probs=113.3

Q ss_pred             CcccccccCCCCCCceeeccC--CCceeeeeeeeccC---CchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEE
Q psy12580        104 LSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNC---TPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVIS  178 (239)
Q Consensus       104 ~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~---~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~  178 (239)
                      |...+.||+|++|.||+|...  +..+++|.+.....   .....+.+.+|+.+++.++|+||+++++++......++++
T Consensus         2 ~~~~~~ig~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~   81 (258)
T cd06632           2 WRKGELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQYLGTEREEDNLYIFL   81 (258)
T ss_pred             ccccceeeecCCceEEEEEEcCCCcEEEEEEEEEccccccchHHHHHHHHHHHHHHhcCCCCchheeeeEecCCeEEEEE
Confidence            456678999999999999874  56778888765432   2334567889999999999999999999999989999999


Q ss_pred             eeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        179 QYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       179 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||+++++|.+++....  .+++..+..++.|++.||.|||+.+  ++|+||+|+||+++
T Consensus        82 e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~i~~~l~~lH~~~--i~H~dl~~~ni~~~  136 (258)
T cd06632          82 ELVPGGSLAKLLKKYG--SFPEPVIRLYTRQILLGLEYLHDRN--TVHRDIKGANILVD  136 (258)
T ss_pred             EecCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCCHHHEEEC
Confidence            9999999999998765  5899999999999999999999999  99999999999985

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=99.90  E-value=6.7e-23  Score=158.44  Aligned_cols=130  Identities=18%  Similarity=0.303  Sum_probs=111.6

Q ss_pred             CcccccccCCCCCCceeecc--CCCceeeeeeeeccCCc-------hHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCce
Q psy12580        104 LSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTP-------RVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDL  174 (239)
Q Consensus       104 ~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~-------~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~  174 (239)
                      +.+...||+|++|.||+|..  .+..+++|.+.......       ...+.+.+|+.+++.++||||+++++++...+..
T Consensus         2 ~~~~~~ig~g~~~~v~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   81 (267)
T cd06628           2 WIKGALIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHENIVQYLGSSLDADHL   81 (267)
T ss_pred             ccccceeecCCCeEEEEEEecCCCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEeCCcc
Confidence            45667899999999999986  34667778775432221       1235678899999999999999999999999999


Q ss_pred             EEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        175 VVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       175 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ++++||+++++|.+++....  .+++..+..++.|++.||+|||+.+  ++||||||+||+++
T Consensus        82 ~lv~e~~~~~~L~~~l~~~~--~l~~~~~~~~~~~l~~~l~~lH~~~--ivH~di~p~nil~~  140 (267)
T cd06628          82 NIFLEYVPGGSVAALLNNYG--AFEETLVRNFVRQILKGLNYLHNRG--IIHRDIKGANILVD  140 (267)
T ss_pred             EEEEEecCCCCHHHHHHhcc--CccHHHHHHHHHHHHHHHHHHHhcC--cccccCCHHHEEEc
Confidence            99999999999999998765  6899999999999999999999999  99999999999986

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=99.90  E-value=5.8e-23  Score=160.61  Aligned_cols=136  Identities=24%  Similarity=0.420  Sum_probs=114.0

Q ss_pred             CCCCCCcccccccCCCCCCceeeccC-------CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCC
Q psy12580         99 ISLNDLSLHTKISSGPNGDTWRGRWQ-------KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSP  171 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g~~g~v~~~~~~-------~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~  171 (239)
                      +...+|...+.+|+|+||.||++...       +..+++|.+... ........+.+|+.+++.+.||||+++++++...
T Consensus         2 ~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~-~~~~~~~~~~~ei~~l~~l~h~~iv~~~~~~~~~   80 (288)
T cd05050           2 YPRNNIEYVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEE-ASADMQADFQREAALMAEFDHPNIVKLLGVCAVG   80 (288)
T ss_pred             CChHhceecccccccccccEEEEEEcccCCCCcceeEEEEecCCC-cCHHHHHHHHHHHHHHHhcCCCchheEEEEEcCC
Confidence            34567888999999999999998753       345666776533 2333446788999999999999999999999998


Q ss_pred             CceEEEEeeCCCCCHHHHhhcCC--------------------CcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCC
Q psy12580        172 PDLVVISQYMAWGSLYALLHEGA--------------------GIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNS  231 (239)
Q Consensus       172 ~~~~lv~e~~~~gsL~~~l~~~~--------------------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp  231 (239)
                      +..++++||+++|+|.+++....                    ...+++..++.++.|++.||.|||+.+  ++||||||
T Consensus        81 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~aL~~lH~~~--i~H~dl~p  158 (288)
T cd05050          81 KPMCLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLSERK--FVHRDLAT  158 (288)
T ss_pred             CccEEEEecCCCCCHHHHHHHcCccccccccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhCC--eecccccH
Confidence            89999999999999999997432                    124788899999999999999999999  99999999


Q ss_pred             ccceee
Q psy12580        232 RHVMVY  237 (239)
Q Consensus       232 ~Nill~  237 (239)
                      +|||++
T Consensus       159 ~nil~~  164 (288)
T cd05050         159 RNCLVG  164 (288)
T ss_pred             hheEec
Confidence            999985

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=99.90  E-value=4.3e-23  Score=160.92  Aligned_cols=136  Identities=21%  Similarity=0.376  Sum_probs=113.0

Q ss_pred             CCCCCCcccccccCCCCCCceeeccC-------CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCC
Q psy12580         99 ISLNDLSLHTKISSGPNGDTWRGRWQ-------KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSP  171 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g~~g~v~~~~~~-------~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~  171 (239)
                      ++..+|.+.+.||+|+||.||+|...       +..+++|++.... .......+..|..++..++||||+++++++...
T Consensus         2 i~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~   80 (283)
T cd05091           2 INLSTVRFMEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKA-EGPLREEFKHEAMMRSRLQHPNIVCLLGVVTKE   80 (283)
T ss_pred             CCHHHHHHHHHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCC-CHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcCC
Confidence            34456788899999999999999763       2456777775432 223346688899999999999999999999999


Q ss_pred             CceEEEEeeCCCCCHHHHhhcCC--------------CcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        172 PDLVVISQYMAWGSLYALLHEGA--------------GIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       172 ~~~~lv~e~~~~gsL~~~l~~~~--------------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +..++++||+.+++|.+++....              ...+++..+..++.|++.||.|||+.+  |+||||||+|||++
T Consensus        81 ~~~~~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~~aL~~lH~~g--i~H~dlkp~Nil~~  158 (283)
T cd05091          81 QPLSMIFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAAGMEFLSSHH--VVHKDLATRNVLVF  158 (283)
T ss_pred             CceEEEEEcCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHcC--ccccccchhheEec
Confidence            99999999999999999985321              124788899999999999999999999  99999999999985

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=99.90  E-value=6.7e-23  Score=157.56  Aligned_cols=126  Identities=24%  Similarity=0.400  Sum_probs=108.7

Q ss_pred             ccccCCCCCCceeeccCC--C---ceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEeeCC
Q psy12580        108 TKISSGPNGDTWRGRWQK--N---DIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMA  182 (239)
Q Consensus       108 ~~ig~g~~g~v~~~~~~~--~---~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~~  182 (239)
                      +.||+|++|.||+|.+..  +   .+++|.+...... ...+.+..|+..+++++||||+++++.+.. ...++|+||++
T Consensus         1 ~~ig~g~~~~v~~~~~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~~v~e~~~   78 (257)
T cd05040           1 KKLGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLS-DIMDDFLKEAAIMHSLDHENLIRLYGVVLT-HPLMMVTELAP   78 (257)
T ss_pred             CcCCccCcccEEeeeEecCCCCceEEEEeecCCcccH-HHHHHHHHHHHHHhhcCCCCccceeEEEcC-CeEEEEEEecC
Confidence            368999999999998732  2   3566777554432 456788999999999999999999999888 88999999999


Q ss_pred             CCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        183 WGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       183 ~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +|+|.+++.......+++..+..++.|++.||.|||+.+  ++|+||||+||+++
T Consensus        79 ~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~--i~H~di~p~nil~~  131 (257)
T cd05040          79 LGSLLDRLRKDALGHFLISTLCDYAVQIANGMRYLESKR--FIHRDLAARNILLA  131 (257)
T ss_pred             CCcHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHhCC--ccccccCcccEEEe
Confidence            999999998754346899999999999999999999999  99999999999996

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=99.90  E-value=8.5e-23  Score=158.01  Aligned_cols=131  Identities=19%  Similarity=0.289  Sum_probs=109.8

Q ss_pred             CCCcccccccCCCCCCceeeccCC--CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEe
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRWQK--NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQ  179 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~~~--~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e  179 (239)
                      +.......+|+|+||.||+|...+  ..+++|.+...  .....+.+.+|+.+++.++|+||+++++++..++..++++|
T Consensus         8 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~--~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   85 (268)
T cd06624           8 DENGERVVLGKGTYGIVYAARDLSTQVRIAIKEIPER--DSRYVQPLHEEIALHSYLKHRNIVQYLGSDSENGFFKIFME   85 (268)
T ss_pred             ccCCceEEEecCCceEEEEeEecCCCcEEEEEEecCC--CHHHHHHHHHHHHHHHhcCCCCeeeeeeeeccCCEEEEEEe
Confidence            344455679999999999998643  44666665433  23344678899999999999999999999999999999999


Q ss_pred             eCCCCCHHHHhhcCCCccc--CHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        180 YMAWGSLYALLHEGAGIVV--DFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       180 ~~~~gsL~~~l~~~~~~~~--~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |+++++|.+++..... .+  ++..+..++.|++.||.|||+.+  |+||||||+||+++
T Consensus        86 ~~~~~~L~~~l~~~~~-~~~~~~~~~~~~~~qi~~al~~lH~~~--i~h~dl~p~nil~~  142 (268)
T cd06624          86 QVPGGSLSALLRSKWG-PLKDNEQTIIFYTKQILEGLKYLHDNQ--IVHRDIKGDNVLVN  142 (268)
T ss_pred             cCCCCCHHHHHHHhcc-cCCCcHHHHHHHHHHHHHHHHHHHHCC--EeecCCCHHHEEEc
Confidence            9999999999986431 34  78889999999999999999999  99999999999996

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=99.90  E-value=4.9e-23  Score=160.69  Aligned_cols=134  Identities=16%  Similarity=0.313  Sum_probs=115.9

Q ss_pred             CCCCCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEE
Q psy12580         99 ISLNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVV  176 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~l  176 (239)
                      +..++|++.+.||+|+||.||++...  +..+++|++... ........+.+|+.+++.++||||+++++++...+..++
T Consensus         2 l~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~-~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~l   80 (284)
T cd06620           2 LRNEDLETISDLGAGNGGSVSKVKHIPTGTVMAKKVVHIG-AKSSVRKQILRELQIMHECRSPYIVSFYGAFLNENNICM   80 (284)
T ss_pred             ccHHHHHHHHHcCCCCCeEEEEEEEcCCCcEEEEEEEEec-CcchHHHHHHHHHHHHHHcCCCCcceEeeeEecCCEEEE
Confidence            34567889999999999999999874  455666766543 233445678899999999999999999999999999999


Q ss_pred             EEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhc-CCCCcccCCCCCccceee
Q psy12580        177 ISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS-LERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       177 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~-~~~~ivHrdikp~Nill~  237 (239)
                      |+||+++++|.+++...+  .+++..+..++.|++.||.|||+ .+  ++||||||+||+++
T Consensus        81 v~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~i~~~l~~LH~~~~--i~H~dl~p~nil~~  138 (284)
T cd06620          81 CMEFMDCGSLDRIYKKGG--PIPVEILGKIAVAVVEGLTYLYNVHR--IMHRDIKPSNILVN  138 (284)
T ss_pred             EEecCCCCCHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHHHHhcC--eeccCCCHHHEEEC
Confidence            999999999999998765  68999999999999999999997 57  99999999999986

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=99.89  E-value=3.9e-23  Score=161.49  Aligned_cols=131  Identities=16%  Similarity=0.238  Sum_probs=105.4

Q ss_pred             CcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhc---CCCceeeeeeeeeCC-----Cc
Q psy12580        104 LSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIF---SHPNVLPVIGCVNSP-----PD  173 (239)
Q Consensus       104 ~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l---~h~~iv~l~~~~~~~-----~~  173 (239)
                      |.+.+.||+|+||.||+|...  +..+++|.+..............+|+.++..+   .||||+++++++...     ..
T Consensus         2 y~~~~~lg~g~~g~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~ni~~~~~~~~~~~~~~~~~   81 (288)
T cd07863           2 YEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVREVALLKRLEAFDHPNIVRLMDVCATSRTDRETK   81 (288)
T ss_pred             ceEeeEEeecCCeEEEEEEECCCCcEEEEEEeccCcCCCCCchHHHHHHHHHHHhhhcCCCCeeeeeeeeccccCCCCce
Confidence            667788999999999999873  46677788765433222223455677666655   799999999987542     35


Q ss_pred             eEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        174 LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .++++||+.+ +|.+++.......+++..+..++.|++.||.|||+.+  |+||||||+|||++
T Consensus        82 ~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~--ivH~dikp~Nili~  142 (288)
T cd07863          82 VTLVFEHVDQ-DLRTYLDKVPPPGLPAETIKDLMRQFLRGLDFLHANC--IVHRDLKPENILVT  142 (288)
T ss_pred             EEEEEccccc-CHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCCHHHEEEC
Confidence            8999999975 9999998755446899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=99.89  E-value=2.8e-23  Score=162.17  Aligned_cols=133  Identities=17%  Similarity=0.229  Sum_probs=113.8

Q ss_pred             CCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEe
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQ  179 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e  179 (239)
                      ++|++.+.||+|+||.||++.+.  +..+++|.+... ........+.+|+.++.+++||||+++++++...+..++|||
T Consensus         1 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~-~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e   79 (286)
T cd06622           1 DEIEVLDELGKGNYGSVYKVLHRPTGVTMAMKEIRLE-LDESKFNQIIMELDILHKAVSPYIVDFYGAFFIEGAVYMCME   79 (286)
T ss_pred             ChhhhhhhhcccCCeEEEEEEEcCCCcEEEEEEeecc-cCHHHHHHHHHHHHHHHhcCCCcHHhhhhheecCCeEEEEEe
Confidence            35788899999999999999884  566777877543 223334678899999999999999999999999999999999


Q ss_pred             eCCCCCHHHHhhcCC-CcccCHHHHHHHHHHHHHHhhhhhc-CCCCcccCCCCCccceee
Q psy12580        180 YMAWGSLYALLHEGA-GIVVDFAQALRFAVDVARGMAFLHS-LERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       180 ~~~~gsL~~~l~~~~-~~~~~~~~~~~~~~~i~~~l~~lH~-~~~~ivHrdikp~Nill~  237 (239)
                      |+++++|.+++.... ...+++..+..++.|++.||.|||+ .+  |+||||||+||+++
T Consensus        80 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~--i~H~dl~p~nil~~  137 (286)
T cd06622          80 YMDAGSLDKLYAGGVATEGIPEDVLRRITYAVVKGLKFLKEEHN--IIHRDVKPTNVLVN  137 (286)
T ss_pred             ecCCCCHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhcCC--EeeCCCCHHHEEEC
Confidence            999999999987641 1258999999999999999999996 58  99999999999986

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=99.89  E-value=6.7e-23  Score=158.76  Aligned_cols=134  Identities=22%  Similarity=0.423  Sum_probs=111.6

Q ss_pred             CCCCCCcccccccCCCCCCceeeccCC-----CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCc
Q psy12580         99 ISLNDLSLHTKISSGPNGDTWRGRWQK-----NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPD  173 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g~~g~v~~~~~~~-----~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~  173 (239)
                      ++..++.+.+.+|+|+||.||+|.+.+     ..+++|..... ......+.+.+|+.+++.+.||||+++++++.. +.
T Consensus         3 ~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~-~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-~~   80 (270)
T cd05056           3 IQREDITLGRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNC-TSPSVREKFLQEAYIMRQFDHPHIVKLIGVITE-NP   80 (270)
T ss_pred             echhhceeeeeeCCccceeEEEEEEecCCCCCcceEEEecCCc-CCHHHHHHHHHHHHHHHhCCCCchhceeEEEcC-CC
Confidence            445678888999999999999998632     23555655432 223445678999999999999999999998875 45


Q ss_pred             eEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        174 LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .++||||+++|+|.+++.... ..+++..+..++.|++.||+|||+.+  ++|+||||+||+++
T Consensus        81 ~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~l~~~l~~lH~~~--~~H~dl~p~nili~  141 (270)
T cd05056          81 VWIVMELAPLGELRSYLQVNK-YSLDLASLILYSYQLSTALAYLESKR--FVHRDIAARNVLVS  141 (270)
T ss_pred             cEEEEEcCCCCcHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHhCC--eeccccChheEEEe
Confidence            789999999999999998654 25899999999999999999999999  99999999999986

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=99.89  E-value=4.3e-23  Score=163.27  Aligned_cols=131  Identities=18%  Similarity=0.214  Sum_probs=112.7

Q ss_pred             cccccccCCCCCCceeeccCCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEeeCCCC
Q psy12580        105 SLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWG  184 (239)
Q Consensus       105 ~~~~~ig~g~~g~v~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~~~g  184 (239)
                      .+.+.+|.|+++.++++...+..+++|.+..........+.+..|+.+++.++||||+++++++...+..+++|||+++|
T Consensus         5 ~i~~~~~~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~e~~~~~   84 (314)
T cd08216           5 LIGKCFEDLMIVHLAKHKPTNTLVAVKKINLDSCSKEDLKLLQQEIITSRQLQHPNILPYVTSFIVDSELYVVSPLMAYG   84 (314)
T ss_pred             hhhHhhcCCceEEEEEecCCCCEEEEEEEeccccchhHHHHHHHHHHHHHhcCCcchhhhhheeecCCeEEEEEeccCCC
Confidence            34455666677667777777888899988765444555678999999999999999999999999999999999999999


Q ss_pred             CHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        185 SLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       185 sL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +|.+++.......+++..+..++.|++.||+|||+.+  |+||||||+||+++
T Consensus        85 ~l~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~LH~~~--ivH~dlk~~Nili~  135 (314)
T cd08216          85 SCEDLLKTHFPEGLPELAIAFILKDVLNALDYIHSKG--FIHRSVKASHILLS  135 (314)
T ss_pred             CHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCCcceEEEe
Confidence            9999998754446899999999999999999999999  99999999999996

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=99.89  E-value=8.1e-23  Score=160.22  Aligned_cols=133  Identities=17%  Similarity=0.280  Sum_probs=113.4

Q ss_pred             CCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEe
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQ  179 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e  179 (239)
                      ++|+..+.||+|.+|.||+|...  +..+++|.+..........+.+.+|+.+++.++||||+++++++...+..++|||
T Consensus         2 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   81 (294)
T PLN00009          2 DQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLVFE   81 (294)
T ss_pred             CceEEEEEecCCCCEEEEEEEecCCCcEEEEEehhhccccccchHHHHHHHHHHHhccCCCEeeEEEEEecCCeEEEEEe
Confidence            46788899999999999999873  4667778775544333344567889999999999999999999999999999999


Q ss_pred             eCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       180 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |++ ++|.+++.......+++..+..++.||+.||+|||+.+  ++||||||+||+++
T Consensus        82 ~~~-~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~--i~H~dl~p~nill~  136 (294)
T PLN00009         82 YLD-LDLKKHMDSSPDFAKNPRLIKTYLYQILRGIAYCHSHR--VLHRDLKPQNLLID  136 (294)
T ss_pred             ccc-ccHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHhCC--eeCCCCCcceEEEE
Confidence            996 48888887655445788999999999999999999999  99999999999996

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=99.89  E-value=8e-23  Score=157.68  Aligned_cols=130  Identities=19%  Similarity=0.380  Sum_probs=115.6

Q ss_pred             CcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEeeC
Q psy12580        104 LSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYM  181 (239)
Q Consensus       104 ~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~  181 (239)
                      |+..+.||+|+||.||++..  .+..+++|.+..........+.+..|+.+++.++|+||+++++.+...+..++|+||+
T Consensus         2 y~~~~~lg~G~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~lv~e~~   81 (264)
T cd06626           2 WQRGNKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVKYYGVEVHREKVYIFMEYC   81 (264)
T ss_pred             ceeeeEeecCCCcEEEEEEECCCCcEEEEEEEECcccchHHHHHHHHHHHHHHhCCCCChhheeeeEecCCEEEEEEecC
Confidence            56778999999999999986  4567777888665544446678999999999999999999999999899999999999


Q ss_pred             CCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        182 AWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       182 ~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ++++|.+++....  .+++..+..++.|++.||.|||+.+  ++|+||+|+||+++
T Consensus        82 ~~~~L~~~~~~~~--~~~~~~~~~i~~~i~~~l~~lh~~~--i~H~dl~~~nil~~  133 (264)
T cd06626          82 SGGTLEELLEHGR--ILDEHVIRVYTLQLLEGLAYLHSHG--IVHRDIKPANIFLD  133 (264)
T ss_pred             CCCcHHHHHhhcC--CCChHHHHHHHHHHHHHHHHHHHCC--cccCCCCHHHEEEC
Confidence            9999999998765  5889999999999999999999999  99999999999986

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=99.89  E-value=1.1e-22  Score=158.25  Aligned_cols=134  Identities=21%  Similarity=0.430  Sum_probs=112.1

Q ss_pred             CCCCCCcccccccCCCCCCceeeccC--CC----ceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCC
Q psy12580         99 ISLNDLSLHTKISSGPNGDTWRGRWQ--KN----DIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP  172 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g~~g~v~~~~~~--~~----~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~  172 (239)
                      +...+++..+.||+|+||.||+|.+.  +.    .+++|++... ........+.+|..++..+.||||+++++++... 
T Consensus         4 l~~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~-~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~-   81 (279)
T cd05109           4 LKETELKKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLREN-TSPKANKEILDEAYVMAGVGSPYVCRLLGICLTS-   81 (279)
T ss_pred             cchhheeeeeecCCCCCceEEEEEEecCCCccceEEEEEEecCC-CCHHHHHHHHHHHHHHHhcCCCCCceEEEEEcCC-
Confidence            34567888899999999999999863  33    2566776533 2334456788999999999999999999998754 


Q ss_pred             ceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        173 DLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       173 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ..++++||+++|+|.+++.... ..+++..+..++.|++.||.|||+.+  |+||||||+|||++
T Consensus        82 ~~~l~~~~~~~g~l~~~l~~~~-~~~~~~~~~~~~~qi~~~L~~lH~~~--iiH~dlkp~Nil~~  143 (279)
T cd05109          82 TVQLVTQLMPYGCLLDYVRENK-DRIGSQDLLNWCVQIAKGMSYLEEVR--LVHRDLAARNVLVK  143 (279)
T ss_pred             CcEEEEEcCCCCCHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHHHHHCC--eeccccccceEEEc
Confidence            4789999999999999998754 25899999999999999999999999  99999999999985

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=99.89  E-value=8.3e-23  Score=159.06  Aligned_cols=136  Identities=21%  Similarity=0.346  Sum_probs=113.4

Q ss_pred             CCCCCCcccccccCCCCCCceeeccCC------CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeC-C
Q psy12580         99 ISLNDLSLHTKISSGPNGDTWRGRWQK------NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNS-P  171 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g~~g~v~~~~~~~------~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~-~  171 (239)
                      +..++|.+.+.||+|+||.||+|.+..      ..+++|.+. ..........+.+|+.+++.++||||+++++++.. +
T Consensus         3 ~~~~~~~~~~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~-~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~   81 (280)
T cd05043           3 ISRDRVTLSDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVK-DHASEIQVTLLLQESCLLYGLSHQNILPILHVCIEDG   81 (280)
T ss_pred             cchhheEEeeeecccCCceEEEEEEecCCCCceeEEEEEEcc-CCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCC
Confidence            456778889999999999999998743      445556654 23334445678899999999999999999998766 4


Q ss_pred             CceEEEEeeCCCCCHHHHhhcCCC------cccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        172 PDLVVISQYMAWGSLYALLHEGAG------IVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       172 ~~~~lv~e~~~~gsL~~~l~~~~~------~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ...++++||+++|+|.+++.....      ..+++..+..++.|++.||+|||+.+  ++||||||+||+++
T Consensus        82 ~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~--i~H~di~p~nil~~  151 (280)
T cd05043          82 EPPFVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQIACGMSYLHKRG--VIHKDIAARNCVID  151 (280)
T ss_pred             CCCEEEEEcCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHHCC--EeecccCHhhEEEc
Confidence            678999999999999999976321      35899999999999999999999999  99999999999985

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=99.89  E-value=3.8e-23  Score=161.23  Aligned_cols=132  Identities=16%  Similarity=0.317  Sum_probs=113.7

Q ss_pred             CCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEee
Q psy12580        103 DLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQY  180 (239)
Q Consensus       103 ~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~  180 (239)
                      +|+..+.||.|++|.||+|..  .+..+++|.+............+..|+.++++++||||+++++++...+..++||||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~   80 (284)
T cd07860           1 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEF   80 (284)
T ss_pred             CceeeeeecCCCceEEEEEEECCCCCEEEEEEccccccccccchHHHHHHHHHHhcCCCCCcchhhhcccCCcEEEEeec
Confidence            366778899999999999987  456677787765443343445788999999999999999999999999999999999


Q ss_pred             CCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        181 MAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       181 ~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +. ++|.+++....+..+++..+..++.|++.||+|||+.+  ++|+||+|+||+++
T Consensus        81 ~~-~~l~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~--i~H~~l~p~nill~  134 (284)
T cd07860          81 LH-QDLKKFMDASPLSGIPLPLIKSYLFQLLQGLAFCHSHR--VLHRDLKPQNLLIN  134 (284)
T ss_pred             cc-cCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCCHHHEEEC
Confidence            96 58999998755457899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=99.89  E-value=1.2e-22  Score=159.11  Aligned_cols=132  Identities=16%  Similarity=0.268  Sum_probs=113.9

Q ss_pred             CCCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEE
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVIS  178 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~  178 (239)
                      .+.|++.+.+|+|+||.||+|...  +..+++|.+...  .....+.+..|+.+++.++||||+++++.+...+..++||
T Consensus        11 ~~~y~i~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   88 (292)
T cd06644          11 NEVWEIIGELGDGAFGKVYKAKNKETGALAAAKVIETK--SEEELEDYMVEIEILATCNHPYIVKLLGAFYWDGKLWIMI   88 (292)
T ss_pred             chhhhhhheecCCCCeEEEEEEECCCCceEEEEEeccC--CHHHHHHHHHHHHHHHhCCCCcEeeeEEEEEeCCeEEEEE
Confidence            466888999999999999999874  455666776432  3444567888999999999999999999999888999999


Q ss_pred             eeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        179 QYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       179 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||+++++|..++.... ..+++..+..++.|++.||.|||+.+  ++||||||+||+++
T Consensus        89 e~~~~~~l~~~~~~~~-~~l~~~~~~~~~~ql~~~l~~lH~~~--i~H~dlkp~Nili~  144 (292)
T cd06644          89 EFCPGGAVDAIMLELD-RGLTEPQIQVICRQMLEALQYLHSMK--IIHRDLKAGNVLLT  144 (292)
T ss_pred             ecCCCCcHHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHhcCC--eeecCCCcceEEEc
Confidence            9999999998886543 25899999999999999999999999  99999999999986

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=99.89  E-value=6.9e-23  Score=158.83  Aligned_cols=130  Identities=18%  Similarity=0.251  Sum_probs=111.1

Q ss_pred             CcccccccCCCCCCceeecc--CCCceeeeeeeeccCC--------chHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCc
Q psy12580        104 LSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCT--------PRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPD  173 (239)
Q Consensus       104 ~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~--------~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~  173 (239)
                      |...+.+|+|++|.||+|..  .+..+++|.+......        ....+.+..|+.+++.++|||++++++++...+.
T Consensus         3 ~~~~~~lg~g~~~~vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   82 (272)
T cd06629           3 WVKGELIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHLNIVQYLGFETTEEY   82 (272)
T ss_pred             eeecceecccCceEEEEEeecCCCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCCCCcceEEEEeccCCc
Confidence            45678899999999999976  4566777876532111        1123467889999999999999999999999999


Q ss_pred             eEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        174 LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .++|+||+.+++|.++++...  .+++..+..++.|++.||.|||+.+  ++|+||+|+||+++
T Consensus        83 ~~lv~e~~~~~~L~~~l~~~~--~l~~~~~~~~~~qi~~~l~~lH~~~--i~H~dl~~~nil~~  142 (272)
T cd06629          83 LSIFLEYVPGGSIGSCLRTYG--RFEEQLVRFFTEQVLEGLAYLHSKG--ILHRDLKADNLLVD  142 (272)
T ss_pred             eEEEEecCCCCcHHHHHhhcc--CCCHHHHHHHHHHHHHHHHHHhhCC--eeecCCChhhEEEc
Confidence            999999999999999998765  6899999999999999999999999  99999999999985

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=99.89  E-value=9.3e-23  Score=158.76  Aligned_cols=126  Identities=18%  Similarity=0.327  Sum_probs=108.7

Q ss_pred             CCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEee
Q psy12580        103 DLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQY  180 (239)
Q Consensus       103 ~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~  180 (239)
                      +|++.+.||+|+||.||+|..  .+..+++|.+... ........+.+|+.++.++.||||+++++.+...+..++||||
T Consensus         2 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~aiK~~~~~-~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   80 (279)
T cd06619           2 DIQYQEILGHGNGGTVYKAYHLLTRRILAVKVIPLD-ITVELQKQIMSELEILYKCDSPYIIGFYGAFFVENRISICTEF   80 (279)
T ss_pred             cchheeeeccCCCeEEEEEEEcCCCcEEEEEEEecC-CChHHHHHHHHHHHHHHhCCCCCeeeEEEEEEECCEEEEEEec
Confidence            567888999999999999986  4566777777543 2334446788999999999999999999999999999999999


Q ss_pred             CCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        181 MAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       181 ~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +++++|..+.      .+++..+..++.|++.||+|||+.+  |+|+||||+|||++
T Consensus        81 ~~~~~l~~~~------~~~~~~~~~~~~qi~~~l~~lH~~~--i~H~dlkp~Nill~  129 (279)
T cd06619          81 MDGGSLDVYR------KIPEHVLGRIAVAVVKGLTYLWSLK--ILHRDVKPSNMLVN  129 (279)
T ss_pred             CCCCChHHhh------cCCHHHHHHHHHHHHHHHHHHHHCC--EeeCCCCHHHEEEC
Confidence            9999987552      4688899999999999999999999  99999999999986

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>PTZ00036 glycogen synthase kinase; Provisional

Probab=99.89  E-value=4.6e-23  Score=169.84  Aligned_cols=129  Identities=13%  Similarity=0.200  Sum_probs=104.8

Q ss_pred             CCCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCC------
Q psy12580        100 SLNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSP------  171 (239)
Q Consensus       100 ~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~------  171 (239)
                      ....|.+.+.||+|+||.||+|..  .+..+++|.+....      ....+|+.+++.++||||+++++++...      
T Consensus        64 ~~~~y~~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~------~~~~~Ei~il~~l~h~niv~l~~~~~~~~~~~~~  137 (440)
T PTZ00036         64 PNKSYKLGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQDP------QYKNRELLIMKNLNHINIIFLKDYYYTECFKKNE  137 (440)
T ss_pred             cCCeEEEeEEEEeCCCEEEEEEEECCCCCEEEEEEEecCc------chHHHHHHHHHhcCCCCCcceeeeEeecccccCC
Confidence            346788999999999999999987  45678888774321      2234699999999999999998876432      


Q ss_pred             --CceEEEEeeCCCCCHHHHhhc--CCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        172 --PDLVVISQYMAWGSLYALLHE--GAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       172 --~~~~lv~e~~~~gsL~~~l~~--~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                        ..+++||||+++ +|.+++..  ..+..+++..++.++.||+.||.|||+.+  |+||||||+|||++
T Consensus       138 ~~~~l~lvmE~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~gL~yLH~~~--IiHrDLKp~NILl~  204 (440)
T PTZ00036        138 KNIFLNVVMEFIPQ-TVHKYMKHYARNNHALPLFLVKLYSYQLCRALAYIHSKF--ICHRDLKPQNLLID  204 (440)
T ss_pred             CceEEEEEEecCCc-cHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHCC--EecCCcCHHHEEEc
Confidence              246799999975 78877753  22236899999999999999999999999  99999999999996

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=99.89  E-value=1.1e-22  Score=156.73  Aligned_cols=131  Identities=19%  Similarity=0.295  Sum_probs=114.6

Q ss_pred             CCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEe
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQ  179 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e  179 (239)
                      ++|...+.+|+|+||.||++...  +..+++|.+....  ....+.+.+|+.+++.++||||+++++++...+..+++||
T Consensus         3 ~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~--~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~l~~e   80 (262)
T cd06613           3 EDYELIQRIGSGTYGDVYKARDIATGELVAIKVIKLEP--GDDFEIIQQEISMLKECRHPNIVAYFGSYLRRDKLWIVME   80 (262)
T ss_pred             cceEEEEEecCCCceEEEEeEecCCCCEEEEEEEEcCc--hhhHHHHHHHHHHHHhCCCCChhceEEEEEeCCEEEEEEe
Confidence            56788899999999999999873  4567777776442  2244678899999999999999999999999999999999


Q ss_pred             eCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       180 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |+++++|.+++.... ..+++..+..++.|++.||.|||+.+  |+|+||||+||+++
T Consensus        81 ~~~~~~l~~~~~~~~-~~l~~~~~~~~~~ql~~~l~~lh~~~--i~h~dl~p~ni~i~  135 (262)
T cd06613          81 YCGGGSLQDIYQVTR-GPLSELQIAYVCRETLKGLAYLHETG--KIHRDIKGANILLT  135 (262)
T ss_pred             CCCCCcHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHHhCC--ceecCCChhhEEEC
Confidence            999999999998752 26899999999999999999999999  99999999999987

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=99.89  E-value=4.1e-23  Score=166.12  Aligned_cols=130  Identities=16%  Similarity=0.227  Sum_probs=109.3

Q ss_pred             CCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCC------
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP------  172 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~------  172 (239)
                      ..+|...+.||+|+||.||++..  .+..+++|.+............+.+|+.+++.++||||+++++++....      
T Consensus        16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~   95 (355)
T cd07874          16 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKSLEEFQ   95 (355)
T ss_pred             hhceeEEEEeeecCCEEEEEEEecCCCceEEEEEeCCcccChHHHHHHHHHHHHHHHhCCCchhceeeeeeccccccccc
Confidence            36788889999999999999976  4567788887654444444567888999999999999999999885432      


Q ss_pred             ceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        173 DLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       173 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ..++||||+++ +|.+.+..    .+++..+..++.|++.||.|||+.|  |+||||||+|||++
T Consensus        96 ~~~lv~e~~~~-~l~~~~~~----~l~~~~~~~~~~qi~~aL~~LH~~g--ivHrDikp~Nill~  153 (355)
T cd07874          96 DVYLVMELMDA-NLCQVIQM----ELDHERMSYLLYQMLCGIKHLHSAG--IIHRDLKPSNIVVK  153 (355)
T ss_pred             eeEEEhhhhcc-cHHHHHhh----cCCHHHHHHHHHHHHHHHHHHHhCC--cccCCCChHHEEEC
Confidence            57999999965 77777754    4788999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>KOG0666|consensus

Probab=99.89  E-value=6e-24  Score=159.15  Aligned_cols=133  Identities=17%  Similarity=0.238  Sum_probs=112.8

Q ss_pred             CCCcccccccCCCCCCceeeccC------CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeC-CCce
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRWQ------KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNS-PPDL  174 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~~------~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~-~~~~  174 (239)
                      ..|+....||+|.||.||+|...      +..+++|.+..............+|+.+++.++|||++.+..++.. +..+
T Consensus        24 ~~ye~ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~kd~tGiS~SAcREiaL~REl~h~nvi~Lv~Vfl~~d~~v  103 (438)
T KOG0666|consen   24 FEYEGIGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEKDGTGISMSACREIALLRELKHPNVISLVKVFLSHDKKV  103 (438)
T ss_pred             HHhhccceecccccceeeEeeeccCCcccchhhHHHHHhccCCCCCcCHHHHHHHHHHHHhcCCcchhHHHHHhccCceE
Confidence            45677788999999999999541      2356778887665445555678899999999999999999998877 6689


Q ss_pred             EEEEeeCCCCCHHHHhhcCC---CcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        175 VVISQYMAWGSLYALLHEGA---GIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       175 ~lv~e~~~~gsL~~~l~~~~---~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +|++||.++ +|.+.|+...   .+.++...++.++.||+.|+.|||+.-  |+||||||.|||+.
T Consensus       104 ~l~fdYAEh-DL~~II~fHr~~~~~~lp~~mvKsilwQil~Gv~YLH~NW--vlHRDLKPaNIlvm  166 (438)
T KOG0666|consen  104 WLLFDYAEH-DLWHIIKFHRASKAKQLPRSMVKSILWQILDGVHYLHSNW--VLHRDLKPANILVM  166 (438)
T ss_pred             EEEehhhhh-hHHHHHHHhccchhccCCHHHHHHHHHHHHhhhHHHhhhh--eeeccCCcceEEEe
Confidence            999999988 9999997422   356899999999999999999999988  99999999999986

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.89  E-value=1.5e-22  Score=157.93  Aligned_cols=131  Identities=23%  Similarity=0.349  Sum_probs=110.5

Q ss_pred             CCcccccccCCCCCCceeecc------CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCC--Cce
Q psy12580        103 DLSLHTKISSGPNGDTWRGRW------QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSP--PDL  174 (239)
Q Consensus       103 ~~~~~~~ig~g~~g~v~~~~~------~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~--~~~  174 (239)
                      -|+..+.||+|+||.||.+.+      .+..+++|.+.... .......+.+|+.+++.++|||++++++++...  ...
T Consensus         5 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   83 (284)
T cd05079           5 FLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPES-GGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGI   83 (284)
T ss_pred             hhhhceecCCCCceeEEEEEEccCCCCccceEEEEEcCccc-cHHHHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCCce
Confidence            356778899999999999864      24556778775432 233446788999999999999999999988765  578


Q ss_pred             EEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        175 VVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       175 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ++||||+++++|.+++.+... .+++..+..++.|++.||+|||+.+  ++||||||+||+++
T Consensus        84 ~lv~e~~~g~~L~~~l~~~~~-~~~~~~~~~i~~~i~~aL~~lH~~g--i~H~dlkp~Nil~~  143 (284)
T cd05079          84 KLIMEFLPSGSLKEYLPRNKN-KINLKQQLKYAVQICKGMDYLGSRQ--YVHRDLAARNVLVE  143 (284)
T ss_pred             EEEEEccCCCCHHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHHCC--eeecccchheEEEc
Confidence            999999999999999976542 5899999999999999999999999  99999999999985

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=99.89  E-value=3.6e-23  Score=161.50  Aligned_cols=131  Identities=15%  Similarity=0.215  Sum_probs=113.4

Q ss_pred             CCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEee
Q psy12580        103 DLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQY  180 (239)
Q Consensus       103 ~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~  180 (239)
                      +|+..+.||+|+||.||+|.+.  +..+++|.+..........+.+.+|+.+++.++||||+++++++..++..++|+||
T Consensus         2 ~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   81 (286)
T cd07846           2 KYENLGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQLRHENLVNLIEVFRRKKRLYLVFEF   81 (286)
T ss_pred             ceeEeeeeccCCCeEEEEEEECCCCCEEEEEeHhhccCcchhhHHHHHHHHHHHhcCCcchhhHHHhcccCCeEEEEEec
Confidence            5677889999999999999884  46677787755443333446688899999999999999999999999999999999


Q ss_pred             CCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        181 MAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       181 ~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +++++|..+.....  .+++..+..++.|++.||.|||+.+  ++|+||+|+||+++
T Consensus        82 ~~~~~l~~~~~~~~--~~~~~~~~~~~~~i~~~l~~LH~~~--i~h~~l~p~ni~~~  134 (286)
T cd07846          82 VDHTVLDDLEKYPN--GLDESRVRKYLFQILRGIEFCHSHN--IIHRDIKPENILVS  134 (286)
T ss_pred             CCccHHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHHCC--ccccCCCHHHEEEC
Confidence            99988888776554  5899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=99.89  E-value=1.5e-22  Score=155.57  Aligned_cols=130  Identities=25%  Similarity=0.461  Sum_probs=112.3

Q ss_pred             cccccccCCCCCCceeeccCC------CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEE
Q psy12580        105 SLHTKISSGPNGDTWRGRWQK------NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVIS  178 (239)
Q Consensus       105 ~~~~~ig~g~~g~v~~~~~~~------~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~  178 (239)
                      ++.+.+|.|+||.||++.+..      ..+++|.+..... ....+.+..|+..+..+.|+||+++++++...+..+++|
T Consensus         2 ~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~i~   80 (258)
T smart00219        2 TLGKKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDAD-EQQIEEFLREARIMRKLDHPNIVKLLGVCTEEEPLMIVM   80 (258)
T ss_pred             cccceeccCCCcceEEEEecCCCCCCCceEEEEEccCCCC-hHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCeeEEEE
Confidence            456789999999999998854      5567787754322 224567889999999999999999999999989999999


Q ss_pred             eeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        179 QYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       179 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||+++++|.+++.......+++..+..++.|++.||.|||+.+  ++|+||||+||+++
T Consensus        81 e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lh~~~--~~h~dl~~~nil~~  137 (258)
T smart00219       81 EYMEGGDLLDYLRKNRPKELSLSDLLSFALQIARGMEYLESKN--FIHRDLAARNCLVG  137 (258)
T ss_pred             eccCCCCHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHhcCC--eeecccccceEEEc
Confidence            9999999999998755323899999999999999999999999  99999999999987

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=99.89  E-value=6.9e-23  Score=160.56  Aligned_cols=132  Identities=17%  Similarity=0.238  Sum_probs=112.7

Q ss_pred             CCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCC--CceEEE
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSP--PDLVVI  177 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~--~~~~lv  177 (239)
                      ++|...+.||+|++|.||+|.++  +..+++|.+............+.+|+.++.+++||||+++++++...  +..++|
T Consensus         5 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~lv   84 (293)
T cd07843           5 DEYEKLNRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEKEGFPITSLREINILLKLQHPNIVTVKEVVVGSNLDKIYMV   84 (293)
T ss_pred             hhhhhhhhhcCCCCeEEEEEEECCCCcEEEEEEEeeccccccchhhHHHHHHHHHhcCCCCEEEEEEEEEecCCCcEEEE
Confidence            56788899999999999999985  45677787765544333344567899999999999999999998777  789999


Q ss_pred             EeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        178 SQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       178 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +||+.+ +|.+++..... .+++..++.++.|++.||+|||+.+  ++|+||||+|||++
T Consensus        85 ~e~~~~-~L~~~~~~~~~-~l~~~~~~~i~~qi~~aL~~LH~~~--i~H~dl~p~nili~  140 (293)
T cd07843          85 MEYVEH-DLKSLMETMKQ-PFLQSEVKCLMLQLLSGVAHLHDNW--ILHRDLKTSNLLLN  140 (293)
T ss_pred             ehhcCc-CHHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHHCC--eeeccCCHHHEEEC
Confidence            999975 99999876542 5899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=99.89  E-value=2.1e-22  Score=156.07  Aligned_cols=127  Identities=28%  Similarity=0.429  Sum_probs=105.2

Q ss_pred             ccccCCCCCCceeeccCC--C--ceeeeeeeeccCCchHHHHHHHHHhHhhhc-CCCceeeeeeeeeCCCceEEEEeeCC
Q psy12580        108 TKISSGPNGDTWRGRWQK--N--DIVAKILAVRNCTPRVSRDFNEEFPKLRIF-SHPNVLPVIGCVNSPPDLVVISQYMA  182 (239)
Q Consensus       108 ~~ig~g~~g~v~~~~~~~--~--~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~l~~~~~~~~~~~lv~e~~~  182 (239)
                      +.+|+|+||.||+|...+  .  .+++|.+.. .......+.+.+|+.++.++ +||||+++++++...+..++||||++
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~~k~~~~-~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~   79 (270)
T cd05047           1 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKE-YASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAP   79 (270)
T ss_pred             CcCCCCCCceEEEEEEcCCCCeeEEEEEEccc-cCCHHHHHHHHHHHHHHHhhccCCCeeeEEEEEecCCCceEEEEeCC
Confidence            358999999999998743  2  234455542 22334446788999999999 79999999999999999999999999


Q ss_pred             CCCHHHHhhcCC--------------CcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        183 WGSLYALLHEGA--------------GIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       183 ~gsL~~~l~~~~--------------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +|+|.+++....              ...+++.++..++.|++.||+|||+.+  ++||||||+|||++
T Consensus        80 ~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~~lH~~~--i~H~dikp~nili~  146 (270)
T cd05047          80 HGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQ--FIHRDLAARNILVG  146 (270)
T ss_pred             CCcHHHHHHhccccccccccccccCCcCCCCHHHHHHHHHHHHHHHHHHHHCC--EeecccccceEEEc
Confidence            999999997532              124789999999999999999999999  99999999999986

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=99.89  E-value=4e-23  Score=161.13  Aligned_cols=130  Identities=18%  Similarity=0.294  Sum_probs=111.3

Q ss_pred             CcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEeeC
Q psy12580        104 LSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYM  181 (239)
Q Consensus       104 ~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~  181 (239)
                      |...+.||+|+||.||++..  .+..+++|.+............+.+|+.+++.++||||+++++++......++++||+
T Consensus         2 y~~~~~l~~g~~~~vy~~~~~~~g~~~~~k~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   81 (284)
T cd07839           2 YEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLYDVLHSDKKLTLVFEYC   81 (284)
T ss_pred             ceeEEEecccCCeEEEEEEECCCCcEEEEEEeecccccccCccchhHHHHHHHhcCCCCeeeHHHHhccCCceEEEEecC
Confidence            56778899999999999987  4566777887654333333456778999999999999999999999999999999999


Q ss_pred             CCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        182 AWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       182 ~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ++ +|.+++....+ .+++..++.++.||++||.|||+.+  |+||||||+||+++
T Consensus        82 ~~-~l~~~~~~~~~-~~~~~~~~~~~~qi~~al~~LH~~~--i~H~dl~~~nil~~  133 (284)
T cd07839          82 DQ-DLKKYFDSCNG-DIDPEIVKSFMFQLLKGLAFCHSHN--VLHRDLKPQNLLIN  133 (284)
T ss_pred             CC-CHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHHCC--EecCCCCHHHEEEc
Confidence            75 88888876432 5899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>PHA03211 serine/threonine kinase US3; Provisional

Probab=99.89  E-value=4.7e-23  Score=169.65  Aligned_cols=124  Identities=19%  Similarity=0.255  Sum_probs=106.9

Q ss_pred             CCCcccccccCCCCCCceeeccCC--CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEe
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRWQK--NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQ  179 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~~~--~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e  179 (239)
                      ..|.+...||+|+||.||++....  ..+++|....        ..+.+|+.++++++|+||+++++++...+..++|||
T Consensus       169 ~gy~i~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~~--------~~~~~E~~iL~~L~HpnIv~l~~~~~~~~~~~lv~e  240 (461)
T PHA03211        169 LGFAIHRALTPGSEGCVFESSHPDYPQRVVVKAGWY--------ASSVHEARLLRRLSHPAVLALLDVRVVGGLTCLVLP  240 (461)
T ss_pred             CCeEEEEEEccCCCeEEEEEEECCCCCEEEEecccc--------cCHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEE
Confidence            467888999999999999998843  5566664321        235689999999999999999999998899999999


Q ss_pred             eCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       180 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ++. ++|.+++..... .+++..++.++.|++.||.|||+.|  ||||||||+|||++
T Consensus       241 ~~~-~~L~~~l~~~~~-~l~~~~~~~i~~qi~~aL~yLH~~g--IvHrDLKP~NILl~  294 (461)
T PHA03211        241 KYR-SDLYTYLGARLR-PLGLAQVTAVARQLLSAIDYIHGEG--IIHRDIKTENVLVN  294 (461)
T ss_pred             ccC-CCHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHHCC--EEECcCCHHHEEEC
Confidence            995 699999876542 5899999999999999999999999  99999999999996

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=99.89  E-value=1.4e-22  Score=159.00  Aligned_cols=129  Identities=18%  Similarity=0.285  Sum_probs=112.5

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEe
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQ  179 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e  179 (239)
                      ..|...+.+|+|++|.||++..  .+..+++|.+.....  .....+.+|+.+++.+.||||+++++.+..+...++|||
T Consensus        20 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~~--~~~~~~~~e~~~l~~~~h~~v~~~~~~~~~~~~~~lv~e   97 (296)
T cd06654          20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQ--PKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVME   97 (296)
T ss_pred             cceeeEEEecCCCCeEEEEEEECCCCcEEEEEEEecCCc--chHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEeec
Confidence            5677888999999999999975  456777787754332  233668889999999999999999999998889999999


Q ss_pred             eCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       180 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |+++++|.+++...   .+++.++..++.|++.||.|||+.+  |+||||||+|||++
T Consensus        98 ~~~~~~L~~~~~~~---~~~~~~~~~i~~ql~~aL~~LH~~g--i~H~dLkp~Nill~  150 (296)
T cd06654          98 YLAGGSLTDVVTET---CMDEGQIAAVCRECLQALEFLHSNQ--VIHRDIKSDNILLG  150 (296)
T ss_pred             ccCCCCHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCCHHHEEEc
Confidence            99999999998754   3789999999999999999999999  99999999999996

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=99.89  E-value=7.6e-23  Score=165.06  Aligned_cols=130  Identities=16%  Similarity=0.227  Sum_probs=109.6

Q ss_pred             CCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCC------
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP------  172 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~------  172 (239)
                      ..+|.+.+.||+|+||.||++..  .+..+++|.+............+.+|+.+++.++||||+++++++....      
T Consensus        23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~~~~~  102 (364)
T cd07875          23 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQ  102 (364)
T ss_pred             hcceeEEEEeecCCCeEEEEEEECCCCcEEEEEEeCccccCchhHHHHHHHHHHHHhcCCCCccccceeecccccccccC
Confidence            36788899999999999999976  4567788888654444444567888999999999999999999875432      


Q ss_pred             ceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        173 DLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       173 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ..++||||+++ +|.+++..    .+++..+..++.|++.||.|||+.+  |+||||||+|||++
T Consensus       103 ~~~lv~e~~~~-~l~~~~~~----~~~~~~~~~~~~qi~~aL~~LH~~~--ivH~Dlkp~NIll~  160 (364)
T cd07875         103 DVYIVMELMDA-NLCQVIQM----ELDHERMSYLLYQMLCGIKHLHSAG--IIHRDLKPSNIVVK  160 (364)
T ss_pred             eEEEEEeCCCC-CHHHHHHh----cCCHHHHHHHHHHHHHHHHHHhhCC--eecCCCCHHHEEEC
Confidence            57999999965 78887754    4788999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>PHA03209 serine/threonine kinase US3; Provisional

Probab=99.89  E-value=5.2e-23  Score=165.51  Aligned_cols=126  Identities=17%  Similarity=0.242  Sum_probs=107.0

Q ss_pred             CCCCCcccccccCCCCCCceeeccCC--CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEE
Q psy12580        100 SLNDLSLHTKISSGPNGDTWRGRWQK--NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVI  177 (239)
Q Consensus       100 ~~~~~~~~~~ig~g~~g~v~~~~~~~--~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv  177 (239)
                      ....|.+.+.||+|+||.||+|...+  ..+++|+....        ....|+.+++.++||||+++++++...+..++|
T Consensus        64 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~valK~~~~~--------~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv  135 (357)
T PHA03209         64 ASLGYTVIKTLTPGSEGRVFVATKPGQPDPVVLKIGQKG--------TTLIEAMLLQNVNHPSVIRMKDTLVSGAITCMV  135 (357)
T ss_pred             hhcCcEEEEEecCCCCeEEEEEEECCCCceEEEEeCCcc--------ccHHHHHHHHhCCCCCCcChhheEEeCCeeEEE
Confidence            33568899999999999999998854  45566653221        234688999999999999999999999999999


Q ss_pred             EeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        178 SQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       178 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +|++. ++|.+++.... ..+++..+..++.||+.||.|||+.+  ||||||||+|||++
T Consensus       136 ~e~~~-~~l~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH~~~--ivHrDlkp~Nill~  191 (357)
T PHA03209        136 LPHYS-SDLYTYLTKRS-RPLPIDQALIIEKQILEGLRYLHAQR--IIHRDVKTENIFIN  191 (357)
T ss_pred             EEccC-CcHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCCHHHEEEC
Confidence            99995 59999987644 26899999999999999999999999  99999999999986

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.89  E-value=1.9e-22  Score=155.73  Aligned_cols=132  Identities=17%  Similarity=0.310  Sum_probs=112.3

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeecc---CCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCC--Cce
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRN---CTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSP--PDL  174 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~---~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~--~~~  174 (239)
                      .+|.+.+.||+|+||.||++..  .+..+++|.+....   ........+.+|+.+++.++||||+++++++...  ..+
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~~   81 (264)
T cd06653           2 VNWRLGKLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIVQYYGCLRDPEEKKL   81 (264)
T ss_pred             CceeeeeeEccCCCeEEEEEEEcCCCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHcCCCCcceEEEEEEcCCCCEE
Confidence            4678889999999999999986  45677778764322   1233446788999999999999999999988654  368


Q ss_pred             EEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        175 VVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       175 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ++++||+++++|.+++....  .+++..+..++.|++.||.|||+.+  ++|+||||+||+++
T Consensus        82 ~~v~e~~~~~~L~~~~~~~~--~l~~~~~~~~~~~i~~al~~LH~~~--i~H~dl~p~ni~i~  140 (264)
T cd06653          82 SIFVEYMPGGSIKDQLKAYG--ALTENVTRRYTRQILQGVSYLHSNM--IVHRDIKGANILRD  140 (264)
T ss_pred             EEEEEeCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHhCC--EecCCCCHHHEEEc
Confidence            89999999999999998765  5889999999999999999999999  99999999999986

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=99.89  E-value=2e-22  Score=155.69  Aligned_cols=133  Identities=17%  Similarity=0.294  Sum_probs=114.9

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEe
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQ  179 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e  179 (239)
                      ++|++.+.+|.|++|.||+|..  .+..+++|++....... ..+.+.+|+..++.++|+|++++++.+...+..++++|
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e   79 (267)
T cd06610           1 DDYELIEVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQT-SVDELRKEVQAMSQCNHPNVVKYYTSFVVGDELWLVMP   79 (267)
T ss_pred             CcceeeeeecCCCCeEEEEEEEcCCCcEEEEEEeccCCcch-HHHHHHHHHHHHHhcCCCCEEEEEEEEeeCCEEEEEEe
Confidence            3577889999999999999986  34566778775443333 45778899999999999999999999999999999999


Q ss_pred             eCCCCCHHHHhhcCCC-cccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        180 YMAWGSLYALLHEGAG-IVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       180 ~~~~gsL~~~l~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ++++++|.+++..... ..+++..+..++.|++.||.|||+.+  ++|+||||+||+++
T Consensus        80 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lh~~~--i~h~~l~p~ni~~~  136 (267)
T cd06610          80 YLSGGSLLDIMKSSYPRGGLDEAIIATVLKEVLKGLEYLHSNG--QIHRDIKAGNILLG  136 (267)
T ss_pred             ccCCCcHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCCHHhEEEc
Confidence            9999999999986432 35899999999999999999999999  99999999999986

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=99.89  E-value=2.1e-22  Score=155.63  Aligned_cols=132  Identities=16%  Similarity=0.269  Sum_probs=111.8

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCC---chHHHHHHHHHhHhhhcCCCceeeeeeeeeC--CCce
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCT---PRVSRDFNEEFPKLRIFSHPNVLPVIGCVNS--PPDL  174 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~---~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~--~~~~  174 (239)
                      .+|...+.+|+|+||.||++..  .+..+++|.+......   ......+.+|+.+++.++||||+++++++..  ....
T Consensus         2 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   81 (266)
T cd06651           2 INWRRGKLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIVQYYGCLRDRAEKTL   81 (266)
T ss_pred             CCccccceecCCCCEEEEEEEEcCCCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcCCCCeeeEEEEEEcCCCCEE
Confidence            3577889999999999999986  4567777877544322   2234568889999999999999999998865  3578


Q ss_pred             EEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        175 VVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       175 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ++++||+++++|.+++....  .+++...+.++.|++.||+|||+.+  |+||||||+||+++
T Consensus        82 ~l~~e~~~~~~L~~~l~~~~--~l~~~~~~~~~~qi~~~l~~LH~~~--i~H~~l~p~nil~~  140 (266)
T cd06651          82 TIFMEYMPGGSVKDQLKAYG--ALTESVTRKYTRQILEGMSYLHSNM--IVHRDIKGANILRD  140 (266)
T ss_pred             EEEEeCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHhCC--eeeCCCCHHHEEEC
Confidence            89999999999999998765  5899999999999999999999999  99999999999986

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=99.89  E-value=1.7e-22  Score=157.07  Aligned_cols=126  Identities=17%  Similarity=0.146  Sum_probs=107.7

Q ss_pred             ccCCCCCCceeecc--CCCceeeeeeeeccCC-chHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEeeCCCCCH
Q psy12580        110 ISSGPNGDTWRGRW--QKNDIVAKILAVRNCT-PRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSL  186 (239)
Q Consensus       110 ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~~~gsL  186 (239)
                      ||+|+||.||++..  .+..+++|.+...... ......+..|+.+++.++||||+++++.+...+..++||||+++++|
T Consensus         1 lg~g~~g~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (277)
T cd05577           1 LGKGGFGEVCACQVKATGKMYACKKLDKKRLKKRKGEQMALNEKKILEKVSSRFIVSLAYAFETKDDLCLVMTLMNGGDL   80 (277)
T ss_pred             CCCCCceeEEEEEEcCCCcEEEEEEEehhhhhhhhhhHHHHHHHHHHHhCCCCCEeeeeeEEecCCeEEEEEecCCCCcH
Confidence            68999999999976  3566777877543222 22234567899999999999999999999999999999999999999


Q ss_pred             HHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        187 YALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       187 ~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .+++.......+++..+..++.|++.||.|||+.+  ++||||+|+||+++
T Consensus        81 ~~~l~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~--i~H~di~p~Nil~~  129 (277)
T cd05577          81 KYHIYNVGEPGFPEARAIFYAAQIICGLEHLHQRR--IVYRDLKPENVLLD  129 (277)
T ss_pred             HHHHHHcCcCCCCHHHHHHHHHHHHHHHHHHHhCC--cccCCCCHHHEEEC
Confidence            99998755446899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>KOG0579|consensus

Probab=99.89  E-value=4.9e-24  Score=173.15  Aligned_cols=132  Identities=16%  Similarity=0.290  Sum_probs=112.7

Q ss_pred             CCCcccccccCCCCCCceeeccCCCce--eeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEe
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRWQKNDI--VAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQ  179 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~~~~~~--~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e  179 (239)
                      +.+.+...+|.|+||.||+|..+...+  ++|++..+  .......++-|+.+|..+.||+|+++++.|...+.+||..|
T Consensus        32 d~WeIiGELGDGAFGKVyKA~nket~~lAAaKvIetk--seEELEDylVEIeILa~CdHP~ivkLl~ayy~enkLwiliE  109 (1187)
T KOG0579|consen   32 DHWEIIGELGDGAFGKVYKAVNKETKLLAAAKVIETK--SEEELEDYLVEIEILAECDHPVIVKLLSAYYFENKLWILIE  109 (1187)
T ss_pred             HHHHHHhhhcCccchhhhhhhcccchhhhhhhhhccc--chhHHhhhhhhhhhhhcCCChHHHHHHHHHhccCceEEEEe
Confidence            334566778999999999999865443  33666543  34556789999999999999999999999988999999999


Q ss_pred             eCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceeec
Q psy12580        180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVYI  238 (239)
Q Consensus       180 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~~  238 (239)
                      ||.||-+..++-.-+ ..+.+.++.-+++|++.||.|||+.+  |||||||..|||++.
T Consensus       110 FC~GGAVDaimlEL~-r~LtE~QIqvvc~q~ldALn~LHs~~--iIHRDLKAGNiL~Tl  165 (1187)
T KOG0579|consen  110 FCGGGAVDAIMLELG-RVLTEDQIQVVCYQVLDALNWLHSQN--IIHRDLKAGNILLTL  165 (1187)
T ss_pred             ecCCchHhHHHHHhc-cccchHHHHHHHHHHHHHHHHHhhcc--hhhhhccccceEEEe
Confidence            999999988877644 37999999999999999999999999  999999999999974

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=99.89  E-value=1.4e-22  Score=158.58  Aligned_cols=132  Identities=15%  Similarity=0.290  Sum_probs=112.8

Q ss_pred             CCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEE
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVIS  178 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~  178 (239)
                      .++|+..+.||+|++|.||+|..  .+..+++|.+...... .....+.+|+.+++.++||||+++++++...+..++||
T Consensus         4 ~~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   82 (291)
T cd07844           4 LETYKKLDKLGEGSYATVYKGRSKLTGQLVALKEIRLEHEE-GAPFTAIREASLLKDLKHANIVTLHDIIHTKKTLTLVF   82 (291)
T ss_pred             ccceeEEEEEeecCCeEEEEEEEcCCCcEEEEEEEeccccc-CCchhHHHHHHHHhhCCCcceeeEEEEEecCCeEEEEE
Confidence            36688889999999999999986  3566777887643322 12244678999999999999999999999999999999


Q ss_pred             eeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        179 QYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       179 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||+.+ +|.+++..... .+++..+..++.|+++||.|||+.+  |+||||||+||+++
T Consensus        83 e~~~~-~L~~~~~~~~~-~~~~~~~~~~~~ql~~al~~lH~~~--i~H~dl~p~nil~~  137 (291)
T cd07844          83 EYLDT-DLKQYMDDCGG-GLSMHNVRLFLFQLLRGLAYCHQRR--VLHRDLKPQNLLIS  137 (291)
T ss_pred             ecCCC-CHHHHHHhCCC-CCCHHHHHHHHHHHHHHHHHHHhCC--eecccCCHHHEEEc
Confidence            99975 99999876543 6899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>KOG0612|consensus

Probab=99.89  E-value=6.4e-24  Score=181.39  Aligned_cols=142  Identities=16%  Similarity=0.158  Sum_probs=121.9

Q ss_pred             ccccCCCCCCCcccccccCCCCCCceeeccCC--CceeeeeeeeccCCc-hHHHHHHHHHhHhhhcCCCceeeeeeeeeC
Q psy12580         94 SRHKGISLNDLSLHTKISSGPNGDTWRGRWQK--NDIVAKILAVRNCTP-RVSRDFNEEFPKLRIFSHPNVLPVIGCVNS  170 (239)
Q Consensus        94 ~~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~--~~~~vk~~~~~~~~~-~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~  170 (239)
                      ....+.+.++|.+.++||+|+||.|...+.++  .-+|.|++.+-.... ....-|..|-.+|.-...+-|+++.-+|.+
T Consensus        67 v~~lrl~~~DfeilKvIGrGaFGEV~lVr~k~t~~VYAMK~lnK~eMlKr~~tA~F~EERDimv~~ns~Wiv~LhyAFQD  146 (1317)
T KOG0612|consen   67 VKELRLKAEDFEILKVIGRGAFGEVALVRHKSTEKVYAMKILNKWEMLKRAETACFREERDIMVFGNSEWIVQLHYAFQD  146 (1317)
T ss_pred             HHHHhCCHHhhHHHHHhcccccceeEEEEeeccccchhHHHhhHHHHhhchhHHHHHHHhHHHHcCCcHHHHHHHHHhcC
Confidence            34566788999999999999999999988843  445668886533222 223457778889998899999999999999


Q ss_pred             CCceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceeecC
Q psy12580        171 PPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVYIL  239 (239)
Q Consensus       171 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~~~  239 (239)
                      +.++|+||||++||+|..++.+..  .+|+.+++.+...|..||+-||+.|  +|||||||+|||||+.
T Consensus       147 ~~~LYlVMdY~pGGDlltLlSk~~--~~pE~~ArFY~aEiVlAldslH~mg--yVHRDiKPDNvLld~~  211 (1317)
T KOG0612|consen  147 ERYLYLVMDYMPGGDLLTLLSKFD--RLPEDWARFYTAEIVLALDSLHSMG--YVHRDIKPDNVLLDKS  211 (1317)
T ss_pred             ccceEEEEecccCchHHHHHhhcC--CChHHHHHHHHHHHHHHHHHHHhcc--ceeccCCcceeEeccc
Confidence            999999999999999999998877  7999999999999999999999999  9999999999999973

>PHA03207 serine/threonine kinase US3; Provisional

Probab=99.89  E-value=9.2e-23  Score=166.02  Aligned_cols=125  Identities=12%  Similarity=0.265  Sum_probs=106.9

Q ss_pred             CCCCcccccccCCCCCCceeeccCC----CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEE
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRWQK----NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVV  176 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~~~----~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~l  176 (239)
                      ...|.+.+.||+|+||.||++...+    ..+++|.+...       ....+|+.+++.++||||+++++++......++
T Consensus        91 ~~~y~i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~~-------~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~l  163 (392)
T PHA03207         91 RMQYNILSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTGG-------KTPGREIDILKTISHRAIINLIHAYRWKSTVCM  163 (392)
T ss_pred             cCceEEEEeecCCCCeEEEEEEEcCCccceeEEEEecccc-------ccHHHHHHHHHhcCCCCccceeeeEeeCCEEEE
Confidence            3568899999999999999987533    44566665432       234579999999999999999999998889999


Q ss_pred             EEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        177 ISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       177 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +||++. ++|.+++....  .+++..++.++.|++.||.|||+.+  ||||||||+|||++
T Consensus       164 v~e~~~-~~l~~~l~~~~--~l~~~~~~~i~~ql~~aL~~LH~~g--ivHrDlkp~Nill~  219 (392)
T PHA03207        164 VMPKYK-CDLFTYVDRSG--PLPLEQAITIQRRLLEALAYLHGRG--IIHRDVKTENIFLD  219 (392)
T ss_pred             EehhcC-CCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCC--ccccCCCHHHEEEc
Confidence            999996 58999996544  6899999999999999999999999  99999999999986

>KOG0199|consensus

Probab=99.89  E-value=1.4e-23  Score=171.85  Aligned_cols=138  Identities=20%  Similarity=0.355  Sum_probs=120.8

Q ss_pred             ccCCCCCCCcccccccCCCCCCceeeccC---CC--ceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeC
Q psy12580         96 HKGISLNDLSLHTKISSGPNGDTWRGRWQ---KN--DIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNS  170 (239)
Q Consensus        96 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~~---~~--~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~  170 (239)
                      ...|..+++.+.+.||+|+||.|++|.|.   +.  .|+||.+....... ..+.|.+|+.+|.+++|+|++++||+..+
T Consensus       104 kclIpee~i~l~e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~~-~mddflrEas~M~~L~H~hliRLyGvVl~  182 (1039)
T KOG0199|consen  104 KCLIPEEQIKLYELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLNA-IMDDFLREASHMLKLQHPHLIRLYGVVLD  182 (1039)
T ss_pred             ceeccHHHHHHHHHhcCcceeeEeeccccCCCCcEEeEEEEeccCCccch-hHHHHHHHHHHHHhccCcceeEEeeeecc
Confidence            44567788889999999999999999993   22  46778887655544 67899999999999999999999999988


Q ss_pred             CCceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        171 PPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       171 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                       ..+.||+|+++.|||.+.|++.....|.......++.||+.||.||.+++  .|||||..+|+||.
T Consensus       183 -qp~mMV~ELaplGSLldrLrka~~~~llv~~Lcdya~QiA~aM~YLeskr--lvHRDLAARNllla  246 (1039)
T KOG0199|consen  183 -QPAMMVFELAPLGSLLDRLRKAKKAILLVSRLCDYAMQIAKAMQYLESKR--LVHRDLAARNLLLA  246 (1039)
T ss_pred             -chhhHHhhhcccchHHHHHhhccccceeHHHHHHHHHHHHHHHHHHhhhh--hhhhhhhhhhheec
Confidence             66899999999999999999854457899999999999999999999999  99999999999984

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=99.89  E-value=2.5e-22  Score=157.74  Aligned_cols=129  Identities=19%  Similarity=0.283  Sum_probs=113.3

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEe
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQ  179 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e  179 (239)
                      ..|...+.||+|++|.||++..  .+..+++|.+.....  ...+.+.+|+.+++.++||||+++++++..++..++|||
T Consensus        19 ~~y~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e   96 (297)
T cd06656          19 KKYTRFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQ--PKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVME   96 (297)
T ss_pred             hhceeeeeeccCCCeEEEEEEECCCCCEEEEEEEecCcc--chHHHHHHHHHHHHhCCCCCEeeEEEEEecCCEEEEeec
Confidence            6678889999999999999975  467788887754332  233567889999999999999999999999999999999


Q ss_pred             eCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       180 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |+++++|.+++...   .+++..+..++.|++.||.|||+.+  ++||||||+|||++
T Consensus        97 ~~~~~~L~~~~~~~---~~~~~~~~~~~~~l~~~L~~LH~~~--i~H~dL~p~Nili~  149 (297)
T cd06656          97 YLAGGSLTDVVTET---CMDEGQIAAVCRECLQALDFLHSNQ--VIHRDIKSDNILLG  149 (297)
T ss_pred             ccCCCCHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCCHHHEEEC
Confidence            99999999999764   3789999999999999999999999  99999999999986

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=99.88  E-value=3e-22  Score=154.39  Aligned_cols=130  Identities=19%  Similarity=0.318  Sum_probs=115.2

Q ss_pred             CCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEee
Q psy12580        103 DLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQY  180 (239)
Q Consensus       103 ~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~  180 (239)
                      +|++.+.||+|++|.||++...  +..+++|.+...... .....+..|+..+..++|+|++++++++...+..++|+||
T Consensus         2 ~~~~~~~i~~g~~~~v~~~~~~~~~~~~~vk~~~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~   80 (264)
T cd06623           2 DLERVKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDE-EFRKQLLRELKTLRSCESPYVVKCYGAFYKEGEISIVLEY   80 (264)
T ss_pred             cceeeeeeeecCCeEEEEEEEcCCCcEEEEEEeccCcch-HHHHHHHHHHHHHHhcCCCCeeeEEEEEccCCeEEEEEEe
Confidence            5678899999999999999874  566777877654332 4457789999999999999999999999999999999999


Q ss_pred             CCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhc-CCCCcccCCCCCccceee
Q psy12580        181 MAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS-LERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       181 ~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~-~~~~ivHrdikp~Nill~  237 (239)
                      +++++|.+++....  .+++..+..++.|+++||.|||+ .+  ++|+||+|+||+++
T Consensus        81 ~~~~~L~~~l~~~~--~l~~~~~~~~~~~l~~~l~~lh~~~~--~~H~~l~~~ni~~~  134 (264)
T cd06623          81 MDGGSLADLLKKVG--KIPEPVLAYIARQILKGLDYLHTKRH--IIHRDIKPSNLLIN  134 (264)
T ss_pred             cCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHhccCC--CccCCCCHHHEEEC
Confidence            99999999998764  68999999999999999999999 99  99999999999986

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=99.88  E-value=3.5e-22  Score=153.09  Aligned_cols=126  Identities=24%  Similarity=0.424  Sum_probs=109.6

Q ss_pred             ccccCCCCCCceeeccC-CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEeeCCCCCH
Q psy12580        108 TKISSGPNGDTWRGRWQ-KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSL  186 (239)
Q Consensus       108 ~~ig~g~~g~v~~~~~~-~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~~~gsL  186 (239)
                      +.||+|++|.||++... ++.+++|........ .....+..|+.+++.+.||||+++++++......++|+||+.+++|
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~v~~K~~~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~l   79 (251)
T cd05041           1 EKIGKGNFGDVYKGVLKGNTEVAVKTCRSTLPP-DLKRKFLQEAEILKQYDHPNIVKLIGVCVQKQPIYIVMELVPGGSL   79 (251)
T ss_pred             CccccCCCceEEEEEEeCCCcEEEEeccccCCH-HHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCCeEEEEEcCCCCcH
Confidence            36899999999999875 567777876543322 3456788999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        187 YALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       187 ~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .+++..... .+++..+..++.|++.||.|||+.+  ++||||||+|||++
T Consensus        80 ~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~lH~~~--i~h~di~p~nili~  127 (251)
T cd05041          80 LTFLRKKKN-RLTVKKLLQMSLDAAAGMEYLESKN--CIHRDLAARNCLVG  127 (251)
T ss_pred             HHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHhCC--EehhhcCcceEEEc
Confidence            999976442 5889999999999999999999999  99999999999996

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=99.88  E-value=1.5e-22  Score=156.27  Aligned_cols=131  Identities=19%  Similarity=0.281  Sum_probs=114.8

Q ss_pred             CCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEee
Q psy12580        103 DLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQY  180 (239)
Q Consensus       103 ~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~  180 (239)
                      +|+..+.||+|++|.||++...  +..+++|.+..... ......+.+|+.+++.+.||||+++++.+...+..++++||
T Consensus         2 ~~~~~~~ig~g~~~~v~~~~~~~~~~~~~ik~~~~~~~-~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~   80 (265)
T cd06605           2 DLEYLGELGAGNSGVVSKVLHRPTGKIMAVKTIRLEIN-EAIQKQILRELDILHKCNSPYIVGFYGAFYNNGDISICMEY   80 (265)
T ss_pred             cchHHHHhcCCCCeEEEEEEEcCCCcEEEEEEEecccC-hHHHHHHHHHHHHHHHCCCCchhhhheeeecCCEEEEEEEe
Confidence            5677889999999999999885  56677787765432 34456788999999999999999999999999999999999


Q ss_pred             CCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhc-CCCCcccCCCCCccceee
Q psy12580        181 MAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS-LERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       181 ~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~-~~~~ivHrdikp~Nill~  237 (239)
                      +++++|.+++.... ..+++..+..++.|++.||.|||+ .+  ++|+||||+||+++
T Consensus        81 ~~~~~L~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~lH~~~~--i~H~dl~~~ni~~~  135 (265)
T cd06605          81 MDGGSLDKILKEVQ-GRIPERILGKIAVAVLKGLTYLHEKHK--IIHRDVKPSNILVN  135 (265)
T ss_pred             cCCCcHHHHHHHcc-CCCCHHHHHHHHHHHHHHHHHHcCCCC--eecCCCCHHHEEEC
Confidence            99999999998753 368999999999999999999999 99  99999999999987

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=99.88  E-value=2.1e-22  Score=156.12  Aligned_cols=131  Identities=17%  Similarity=0.329  Sum_probs=109.4

Q ss_pred             CCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhc-CCCceeeeeeeeeCC------C
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIF-SHPNVLPVIGCVNSP------P  172 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~l~~~~~~~------~  172 (239)
                      ..|...+.+|+|+||.||+|...  +..+++|.+....   .....+..|+.++..+ +||||+++++++...      .
T Consensus         6 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~---~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~   82 (272)
T cd06637           6 GIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTG---DEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDD   82 (272)
T ss_pred             hhhhHHHheeecCCeEEEEEEEcCCCcEEEEEEEEcCC---ccHHHHHHHHHHHHHhcCCCCeeeEeeEEeecCCCCCCc
Confidence            45677788999999999999874  3556667765332   2335678899999988 699999999988643      3


Q ss_pred             ceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        173 DLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       173 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ..+++|||+.+|+|.+++.......+++..+..++.|++.||.|||+.+  |+||||||+||+++
T Consensus        83 ~~~iv~e~~~~~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~LH~~~--ivh~dl~~~nili~  145 (272)
T cd06637          83 QLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQHK--VIHRDIKGQNVLLT  145 (272)
T ss_pred             EEEEEEEcCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCC--CccCCCCHHHEEEC
Confidence            5899999999999999998754446899999999999999999999999  99999999999986

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=99.88  E-value=2.7e-22  Score=154.64  Aligned_cols=124  Identities=15%  Similarity=0.204  Sum_probs=109.9

Q ss_pred             ccCCCCCCceeeccC--CCceeeeeeeeccCC-chHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEeeCCCCCH
Q psy12580        110 ISSGPNGDTWRGRWQ--KNDIVAKILAVRNCT-PRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSL  186 (239)
Q Consensus       110 ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~~~gsL  186 (239)
                      ||.|++|.||++...  +..+++|++...... ....+.+.+|+.+++.++||||+++++.+..+...++++||+++++|
T Consensus         1 lg~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (262)
T cd05572           1 LGVGGFGRVELVKVKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFIVKLYRTFKDKKYIYMLMEYCLGGEL   80 (262)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEEehhcchhhhHHHHHHHHHHHHHhCCCCCEeeeeeeEEcCCccEEEEecCCCCcH
Confidence            689999999999985  677888888654322 33456788999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        187 YALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       187 ~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .+++.+..  .+++..+..++.|++.||.|||+.+  ++|+||||+||+++
T Consensus        81 ~~~l~~~~--~l~~~~~~~~~~~i~~~l~~lH~~~--~~h~dl~~~nilv~  127 (262)
T cd05572          81 WTILRDRG--LFDEYTARFYIACVVLAFEYLHNRG--IIYRDLKPENLLLD  127 (262)
T ss_pred             HHHHhhcC--CCCHHHHHHHHHHHHHHHHHHhhCC--cccCCCCHHHEEEc
Confidence            99998765  5899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=99.88  E-value=3.6e-22  Score=153.32  Aligned_cols=133  Identities=19%  Similarity=0.308  Sum_probs=117.3

Q ss_pred             CCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEee
Q psy12580        103 DLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQY  180 (239)
Q Consensus       103 ~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~  180 (239)
                      +|.+.+.+|+|++|.||++...  +..+++|.+..........+.+..|+.+++.++|||++++.+.+......++|+||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~~~~~lv~e~   80 (258)
T cd08215           1 KYEIIKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKLNHPNIIKYYESFEEKGKLCIVMEY   80 (258)
T ss_pred             CceEEeeeccCCCeEEEEEEEcCCCcEEEEEEeecccCChHHHHHHHHHHHHHHhcCCCChhheEEEEecCCEEEEEEEe
Confidence            3667788999999999999885  67778888876555455667788999999999999999999999888999999999


Q ss_pred             CCCCCHHHHhhcCC--CcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        181 MAWGSLYALLHEGA--GIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       181 ~~~gsL~~~l~~~~--~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +++++|.+++....  +..+++..+..++.|++.||.|||+.+  ++|+||+|+||+++
T Consensus        81 ~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~--~~H~dl~~~nil~~  137 (258)
T cd08215          81 ADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLHSRK--ILHRDIKPQNIFLT  137 (258)
T ss_pred             cCCCcHHHHHHHhhccCCCcCHHHHHHHHHHHHHHHHHHHhCC--EecccCChHHeEEc
Confidence            99999999998742  246999999999999999999999999  99999999999987

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=99.88  E-value=3.8e-22  Score=153.23  Aligned_cols=130  Identities=14%  Similarity=0.274  Sum_probs=114.5

Q ss_pred             CCCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEE
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVIS  178 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~  178 (239)
                      .++|...+.+|+|+||.||++.+.  +..+++|.+.....    .+.+.+|+.+++.++||||+++++.+......++++
T Consensus         2 ~~~y~~~~~i~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~----~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~   77 (256)
T cd06612           2 EEVFDILEKLGEGSYGSVYKAIHKETGQVVAIKVVPVEED----LQEIIKEISILKQCDSPYIVKYYGSYFKNTDLWIVM   77 (256)
T ss_pred             cccchhhhhhcCCCCeEEEEEEEcCCCcEEEEEEeecHHH----HHHHHHHHHHHHhCCCCcEeeeeeeeecCCcEEEEE
Confidence            357888999999999999999885  46677777754321    567889999999999999999999999999999999


Q ss_pred             eeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        179 QYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       179 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||+++++|.+++.... ..+++..+..++.|++.||.|||+.+  ++|+||+|+||+++
T Consensus        78 e~~~~~~L~~~l~~~~-~~l~~~~~~~~~~~l~~~l~~lh~~~--i~H~dl~~~ni~~~  133 (256)
T cd06612          78 EYCGAGSVSDIMKITN-KTLTEEEIAAILYQTLKGLEYLHSNK--KIHRDIKAGNILLN  133 (256)
T ss_pred             ecCCCCcHHHHHHhCc-cCCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCCcceEEEC
Confidence            9999999999997644 36899999999999999999999999  99999999999986

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=99.88  E-value=4e-22  Score=155.66  Aligned_cols=135  Identities=16%  Similarity=0.222  Sum_probs=110.5

Q ss_pred             CCCCCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhc-CCCceeeeeeeee-----
Q psy12580         98 GISLNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIF-SHPNVLPVIGCVN-----  169 (239)
Q Consensus        98 ~~~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~l~~~~~-----  169 (239)
                      ....++|++.+.||+|+||.||++..  .+..+++|++...   ......+..|+.++..+ +||||+++++++.     
T Consensus        14 ~~~~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~---~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~   90 (286)
T cd06638          14 PDPSDTWEIIETIGKGTYGKVFKVLNKKNGSKAAVKILDPI---HDIDEEIEAEYNILKALSDHPNVVKFYGMYYKKDVK   90 (286)
T ss_pred             CCcccceeeeeeeccCCCcEEEEEEECCCCceeEEEeeccc---cchHHHHHHHHHHHHHHhcCCCeeeeeeeeeecccC
Confidence            34457888999999999999999976  4466777776432   12235577899999998 6999999999873     


Q ss_pred             CCCceEEEEeeCCCCCHHHHhhcC--CCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        170 SPPDLVVISQYMAWGSLYALLHEG--AGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       170 ~~~~~~lv~e~~~~gsL~~~l~~~--~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .++..++||||+++++|.+++...  ....+++..+..++.|+++||.|||+.+  ++||||||+||+++
T Consensus        91 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~--i~H~dlkp~nili~  158 (286)
T cd06638          91 NGDQLWLVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGLQHLHVNK--TIHRDVKGNNILLT  158 (286)
T ss_pred             CCCeEEEEEeecCCCCHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHhCC--ccccCCCHHhEEEC
Confidence            345789999999999999988632  2235889999999999999999999999  99999999999986

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=99.88  E-value=2.7e-22  Score=156.34  Aligned_cols=132  Identities=15%  Similarity=0.237  Sum_probs=107.5

Q ss_pred             CCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhH-hhhcCCCceeeeeeeeeCCCceEEEE
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPK-LRIFSHPNVLPVIGCVNSPPDLVVIS  178 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~-l~~l~h~~iv~l~~~~~~~~~~~lv~  178 (239)
                      ++|.+.+.||+|+||.||++...  +..+++|.+....... ....+..|... ++...||||+++++++...+..+++|
T Consensus         1 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~iv~~~~~~~~~~~~~lv~   79 (283)
T cd06617           1 DDLEVIEELGRGAYGVVDKMRHVPTGTIMAVKRIRATVNSQ-EQKRLLMDLDISMRSVDCPYTVTFYGALFREGDVWICM   79 (283)
T ss_pred             CCceEEEEecccCCeEEEEEEEcCCCcEEEEEEEecCCCcH-HHHHHHHHHHHHHHHcCCCCeeeeeEEEecCCcEEEEh
Confidence            36778889999999999999874  5677888876543322 23445556665 55668999999999999999999999


Q ss_pred             eeCCCCCHHHHhhcC--CCcccCHHHHHHHHHHHHHHhhhhhcC-CCCcccCCCCCccceee
Q psy12580        179 QYMAWGSLYALLHEG--AGIVVDFAQALRFAVDVARGMAFLHSL-ERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       179 e~~~~gsL~~~l~~~--~~~~~~~~~~~~~~~~i~~~l~~lH~~-~~~ivHrdikp~Nill~  237 (239)
                      ||++ |+|.+++...  ....+++..++.++.|++.||+|||+. +  ++||||||+|||++
T Consensus        80 e~~~-~~l~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~--i~h~dlkp~nil~~  138 (283)
T cd06617          80 EVMD-TSLDKFYKKVYDKGLTIPEDILGKIAVSIVKALEYLHSKLS--VIHRDVKPSNVLIN  138 (283)
T ss_pred             hhhc-ccHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhcCC--eecCCCCHHHEEEC
Confidence            9996 5898888652  224689999999999999999999986 8  99999999999986

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=99.88  E-value=2.3e-22  Score=157.36  Aligned_cols=130  Identities=15%  Similarity=0.223  Sum_probs=111.2

Q ss_pred             CcccccccCCCCCCceeecc-----CCCceeeeeeeeccC--CchHHHHHHHHHhHhhhc-CCCceeeeeeeeeCCCceE
Q psy12580        104 LSLHTKISSGPNGDTWRGRW-----QKNDIVAKILAVRNC--TPRVSRDFNEEFPKLRIF-SHPNVLPVIGCVNSPPDLV  175 (239)
Q Consensus       104 ~~~~~~ig~g~~g~v~~~~~-----~~~~~~vk~~~~~~~--~~~~~~~~~~e~~~l~~l-~h~~iv~l~~~~~~~~~~~  175 (239)
                      |++.+.||+|+||.||.+..     .+..+++|++.....  .....+.+.+|+.++..+ +|++|+++++++..+...+
T Consensus         2 y~~~~~lg~G~~g~v~~~~~~~~~~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~   81 (290)
T cd05613           2 FELLKVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTDTKLH   81 (290)
T ss_pred             ceeeeeeccCCcceEEEEEeccCCCCCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhcccCCChhceeeEeecCCeEE
Confidence            56778999999999999875     456677788754322  122345678899999999 5899999999999888999


Q ss_pred             EEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        176 VISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       176 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +|+||+++++|.+++....  .+++..+..++.|++.||.|||+.+  ++||||||+|||++
T Consensus        82 lv~e~~~~~~L~~~l~~~~--~l~~~~~~~~~~qi~~al~~lH~~~--i~H~dl~p~nil~~  139 (290)
T cd05613          82 LILDYINGGELFTHLSQRE--RFKEQEVQIYSGEIVLALEHLHKLG--IIYRDIKLENILLD  139 (290)
T ss_pred             EEEecCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHhCC--eeccCCCHHHeEEC
Confidence            9999999999999998765  6889999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=99.88  E-value=3.5e-22  Score=155.54  Aligned_cols=125  Identities=17%  Similarity=0.155  Sum_probs=101.5

Q ss_pred             cccCCCCCCceeecc--CCCceeeeeeeeccCCch-HHHHHHHHHhHhh---hcCCCceeeeeeeeeCCCceEEEEeeCC
Q psy12580        109 KISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPR-VSRDFNEEFPKLR---IFSHPNVLPVIGCVNSPPDLVVISQYMA  182 (239)
Q Consensus       109 ~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~-~~~~~~~e~~~l~---~l~h~~iv~l~~~~~~~~~~~lv~e~~~  182 (239)
                      .||+|+||.||++..  .+..+++|.+........ ....+..|..+++   ...||+|+.+++.+...+..++||||++
T Consensus         1 ~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~   80 (279)
T cd05633           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMTYAFHTPDKLCFILDLMN   80 (279)
T ss_pred             CcccCCCeEEEEEEECCCCcEEEEEEEEccccccchHHHHHHHHHHHHHHHhhCCCCcEeEEEEEEecCCeEEEEEecCC
Confidence            379999999999887  346777887765433222 2233344443333   3478999999999998889999999999


Q ss_pred             CCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        183 WGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       183 ~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +|+|.+++....  .+++..+..++.|++.||+|||+.+  |+||||||+|||++
T Consensus        81 ~~~L~~~i~~~~--~l~~~~~~~i~~qi~~al~~lH~~~--ivH~dikp~Nil~~  131 (279)
T cd05633          81 GGDLHYHLSQHG--VFSEKEMRFYATEIILGLEHMHNRF--VVYRDLKPANILLD  131 (279)
T ss_pred             CCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCC--cCCCCCCHHHEEEC
Confidence            999999998765  6999999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=99.88  E-value=4e-22  Score=152.79  Aligned_cols=130  Identities=18%  Similarity=0.342  Sum_probs=115.4

Q ss_pred             CcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEeeC
Q psy12580        104 LSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYM  181 (239)
Q Consensus       104 ~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~  181 (239)
                      |.+.+.+|+|++|.+|++..  .+..+++|............+.+.+|+.++.+++|||++++++++...+..++++||+
T Consensus         2 y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~   81 (254)
T cd06627           2 YQLGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNIVKYIGSIETSDSLYIILEYA   81 (254)
T ss_pred             ceeeeEEcccCCeEEEEEEEcCCCcEEEEEEecccccCHHHHHHHHHHHHHHHhCCCCCccEEEEEEEeCCEEEEEEecC
Confidence            56778999999999999976  3467778888665444455678899999999999999999999999889999999999


Q ss_pred             CCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        182 AWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       182 ~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ++++|.+++....  .+++..+..++.|++.||.|||+.+  |+||||||+||+++
T Consensus        82 ~~~~L~~~~~~~~--~l~~~~~~~~~~~i~~~l~~lH~~~--i~H~dl~p~ni~i~  133 (254)
T cd06627          82 ENGSLRQIIKKFG--PFPESLVAVYVYQVLQGLAYLHEQG--VIHRDIKAANILTT  133 (254)
T ss_pred             CCCcHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHHhhCC--cccCCCCHHHEEEC
Confidence            9999999998765  6899999999999999999999999  99999999999986

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=99.88  E-value=3e-22  Score=157.69  Aligned_cols=134  Identities=25%  Similarity=0.469  Sum_probs=109.7

Q ss_pred             CCCCCCcccccccCCCCCCceeeccC--CC----ceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCC
Q psy12580         99 ISLNDLSLHTKISSGPNGDTWRGRWQ--KN----DIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP  172 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g~~g~v~~~~~~--~~----~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~  172 (239)
                      +...++...+.||+|+||.||+|.+.  +.    .+++|.+... ........+.+|+.+++.+.||||+++++++... 
T Consensus         4 ~~~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~-   81 (303)
T cd05110           4 LKETELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNET-TGPKANVEFMDEALIMASMDHPHLVRLLGVCLSP-   81 (303)
T ss_pred             cchhhceeccccccCCCccEEEEEEecCCCcceeeEEEEecccc-CCHHHHHHHHHHHHHHHhCCCCCcccEEEEEcCC-
Confidence            34567788889999999999999873  22    2355555432 2233345688899999999999999999998755 


Q ss_pred             ceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        173 DLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       173 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ..++++||+++|+|.+++.... ..+++..+..++.|++.||.|||+.+  |+||||||+||+++
T Consensus        82 ~~~~v~e~~~~g~l~~~~~~~~-~~~~~~~~~~~~~qi~~~L~~LH~~~--ivH~dikp~Nill~  143 (303)
T cd05110          82 TIQLVTQLMPHGCLLDYVHEHK-DNIGSQLLLNWCVQIAKGMMYLEERR--LVHRDLAARNVLVK  143 (303)
T ss_pred             CceeeehhcCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHhhcC--eeccccccceeeec
Confidence            4679999999999999998654 25889999999999999999999999  99999999999985

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.88  E-value=1.1e-22  Score=148.81  Aligned_cols=125  Identities=12%  Similarity=0.092  Sum_probs=93.1

Q ss_pred             cccccCCCCCCceeecc-CCCceeeeeeeeccCCchH------------------------HHHHHHHHhHhhhcCCCce
Q psy12580        107 HTKISSGPNGDTWRGRW-QKNDIVAKILAVRNCTPRV------------------------SRDFNEEFPKLRIFSHPNV  161 (239)
Q Consensus       107 ~~~ig~g~~g~v~~~~~-~~~~~~vk~~~~~~~~~~~------------------------~~~~~~e~~~l~~l~h~~i  161 (239)
                      ...||+|+||.||+|.. .+..+++|++.........                        ......|...+..+.++++
T Consensus         2 ~~~ig~G~~~~Vy~a~~~~g~~vAvKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~v   81 (190)
T cd05147           2 NGCISTGKEANVYHATTANGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKRLVTAGI   81 (190)
T ss_pred             CCccccccceEEEEEECCCCCEEEEEEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            35799999999999987 4678888998654321111                        1122458899999977765


Q ss_pred             eeeeeeeeCCCceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhh-hcCCCCcccCCCCCccceee
Q psy12580        162 LPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL-HSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       162 v~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~l-H~~~~~ivHrdikp~Nill~  237 (239)
                      ........ . ..+|||||++++++........  .++...+..++.|++.+|.|+ |+.|  |+||||||+|||++
T Consensus        82 ~~p~~~~~-~-~~~iVmE~i~g~~l~~~~~~~~--~~~~~~~~~i~~qi~~~L~~l~H~~g--iiHrDlkP~NIli~  152 (190)
T cd05147          82 PCPEPILL-K-SHVLVMEFIGDDGWAAPRLKDA--PLSESKARELYLQVIQIMRILYQDCR--LVHADLSEYNLLYH  152 (190)
T ss_pred             CCCcEEEe-c-CCEEEEEEeCCCCCcchhhhcC--CCCHHHHHHHHHHHHHHHHHHHHhCC--cccCCCCHHHEEEE
Confidence            33332222 2 2389999999887765533333  589999999999999999999 7899  99999999999986

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=99.88  E-value=3.4e-22  Score=154.11  Aligned_cols=133  Identities=17%  Similarity=0.228  Sum_probs=112.1

Q ss_pred             CCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeC--CCceEEEE
Q psy12580        103 DLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNS--PPDLVVIS  178 (239)
Q Consensus       103 ~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~--~~~~~lv~  178 (239)
                      +|++.+.+|+|+||.||++..  .+..+++|.+..........+.+..|+.+++.++||||+++++++..  ....++++
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~   80 (265)
T cd08217           1 DYEVLETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVSEVNILRELKHPNIVRYYDRIIDRSNQTLYIVM   80 (265)
T ss_pred             CceeeeeeccCCCeEEEEeeecCCCCEEEEEEEecccCCHHHHHHHHHHHHHHHhcCCCccceeeeeeecCCCCEEEEEe
Confidence            366778899999999999976  34567778776555555556778899999999999999999997754  34689999


Q ss_pred             eeCCCCCHHHHhhcC--CCcccCHHHHHHHHHHHHHHhhhhh-----cCCCCcccCCCCCccceee
Q psy12580        179 QYMAWGSLYALLHEG--AGIVVDFAQALRFAVDVARGMAFLH-----SLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       179 e~~~~gsL~~~l~~~--~~~~~~~~~~~~~~~~i~~~l~~lH-----~~~~~ivHrdikp~Nill~  237 (239)
                      ||+++++|.+++...  ....+++..++.++.|++.||.|||     +.+  ++|+||||+||+++
T Consensus        81 e~~~~~~L~~~l~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~~~~--i~h~dl~p~nili~  144 (265)
T cd08217          81 EYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALYECHNRSDPGNT--VLHRDLKPANIFLD  144 (265)
T ss_pred             hhccCCCHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhcCccccCc--ceecCCCHHHEEEe
Confidence            999999999999753  1236899999999999999999999     777  99999999999986

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=99.88  E-value=1.6e-22  Score=158.02  Aligned_cols=131  Identities=15%  Similarity=0.177  Sum_probs=112.6

Q ss_pred             CCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEee
Q psy12580        103 DLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQY  180 (239)
Q Consensus       103 ~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~  180 (239)
                      +|++.+.||+|++|.||+|...  +..+++|.+..........+.+.+|+.+++.++|+||+++++++..++..++++||
T Consensus         2 ~y~~~~~i~~g~~~~v~~~~~~~~~~~v~vK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e~   81 (288)
T cd07833           2 KYEVLGVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQLRHENIVNLKEAFRRKGRLYLVFEY   81 (288)
T ss_pred             ceeEEEEecccCCeeEEEEEeCCCCcEEEEehhhhhcccccchhHHHHHHHHHHhcCCCCeeehhheEEECCEEEEEEec
Confidence            4778889999999999999874  45677787765444444457788999999999999999999999998999999999


Q ss_pred             CCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        181 MAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       181 ~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ++++.+..+.....  .+++..+..++.|++.||.|||+.+  ++|+||+|+||+++
T Consensus        82 ~~~~~l~~~~~~~~--~~~~~~~~~~~~~i~~~l~~LH~~~--i~H~dl~~~ni~~~  134 (288)
T cd07833          82 VERTLLELLEASPG--GLPPDAVRSYIWQLLQAIAYCHSHN--IIHRDIKPENILVS  134 (288)
T ss_pred             CCCCHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCCHHHeEEC
Confidence            99877666655544  5899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>KOG1290|consensus

Probab=99.88  E-value=1.9e-22  Score=158.94  Aligned_cols=133  Identities=14%  Similarity=0.205  Sum_probs=110.6

Q ss_pred             CCCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcC-----CC---ceeeeeeeee
Q psy12580        100 SLNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFS-----HP---NVLPVIGCVN  169 (239)
Q Consensus       100 ~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~-----h~---~iv~l~~~~~  169 (239)
                      ....|.+.++||.|.|++||.|..  ..+-||+|+.+..   ....+....|+.+|++++     ++   .||+|++.|.
T Consensus        76 ~~gRY~v~rKLGWGHFSTVWLawDtq~~r~VAlKVvKSA---qhYtEaAlDEIklL~~v~~~Dp~~~~~~~VV~LlD~Fk  152 (590)
T KOG1290|consen   76 NGGRYHVQRKLGWGHFSTVWLAWDTQNKRYVALKVVKSA---QHYTEAALDEIKLLQQVREGDPNDPGKKCVVQLLDHFK  152 (590)
T ss_pred             cCceEEEEEeccccccceeEEEeeccCCeEEEEEEEehh---hHHHHHHHHHHHHHHHHHhcCCCCCCCceeeeeeccce
Confidence            337788999999999999999987  3455666777543   344566788999999873     32   5999999885


Q ss_pred             CC----CceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhc-CCCCcccCCCCCccceeec
Q psy12580        170 SP----PDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS-LERIIPQYQLNSRHVMVYI  238 (239)
Q Consensus       170 ~~----~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~-~~~~ivHrdikp~Nill~~  238 (239)
                      ..    .++|||+|++ |.+|..+|+....+.++...++.|++||+.||+|||+ +|  |||.||||+|||+-+
T Consensus       153 hsGpNG~HVCMVfEvL-GdnLLklI~~s~YrGlpl~~VK~I~~qvL~GLdYLH~ecg--IIHTDlKPENvLl~~  223 (590)
T KOG1290|consen  153 HSGPNGQHVCMVFEVL-GDNLLKLIKYSNYRGLPLSCVKEICRQVLTGLDYLHRECG--IIHTDLKPENVLLCS  223 (590)
T ss_pred             ecCCCCcEEEEEehhh-hhHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHhcC--ccccCCCcceeeeec
Confidence            43    3899999999 5599999998777789999999999999999999997 77  999999999999853

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=99.88  E-value=5.3e-22  Score=153.90  Aligned_cols=132  Identities=23%  Similarity=0.387  Sum_probs=108.4

Q ss_pred             CcccccccCCCCCCceeeccC-----CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCC------
Q psy12580        104 LSLHTKISSGPNGDTWRGRWQ-----KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP------  172 (239)
Q Consensus       104 ~~~~~~ig~g~~g~v~~~~~~-----~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~------  172 (239)
                      |.+.+.||+|+||.||+|.+.     +..+++|.+..........+.+.+|+.+++.++||||+++++++....      
T Consensus         1 ~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   80 (273)
T cd05074           1 FTLGRMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFSSSDIEEFLREAACMKEFDHPNVIKLIGVSLRSRAKGRLP   80 (273)
T ss_pred             CcchhcccCCCCCCEEeeEeeccCCCceEEEEEEeccccCChHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCCCCccc
Confidence            346678999999999999752     356778888665545555677889999999999999999999885532      


Q ss_pred             ceEEEEeeCCCCCHHHHhhcCC----CcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        173 DLVVISQYMAWGSLYALLHEGA----GIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       173 ~~~lv~e~~~~gsL~~~l~~~~----~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ..++++||+.+|+|.+++....    ...+++..+..++.|++.||+|||+.+  |+||||||+||+++
T Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~--i~H~dikp~nili~  147 (273)
T cd05074          81 IPMVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMIDIASGMEYLSSKN--FIHRDLAARNCMLN  147 (273)
T ss_pred             ceEEEEecCCCCcHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHhCC--EeecccchhhEEEc
Confidence            3478899999999998875321    124789999999999999999999999  99999999999986

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>KOG4278|consensus

Probab=99.88  E-value=3.4e-23  Score=168.01  Aligned_cols=137  Identities=22%  Similarity=0.440  Sum_probs=121.5

Q ss_pred             ccCCCCCCCcccccccCCCCCCceeeccCC--CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCc
Q psy12580         96 HKGISLNDLSLHTKISSGPNGDTWRGRWQK--NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPD  173 (239)
Q Consensus        96 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~--~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~  173 (239)
                      .++....++....++|-|.||.||.|.|+.  -.++||.++..   .-...+|+.|+.+|+.++|||+|+++|+|....+
T Consensus       261 kWEmeRtdItMkhKLGGGQYGeVYeGvWKkyslTvAVKtLKED---tMeveEFLkEAAvMKeikHpNLVqLLGVCT~EpP  337 (1157)
T KOG4278|consen  261 KWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED---TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTHEPP  337 (1157)
T ss_pred             hhhccchheeeeeccCCCcccceeeeeeeccceeeehhhhhhc---chhHHHHHHHHHHHHhhcCccHHHHhhhhccCCC
Confidence            466677788888899999999999999965  45667777543   3345789999999999999999999999999999


Q ss_pred             eEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        174 LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +|||+|||..|+|.+||++.....++.-..+.++.||.+||+||...+  +|||||..+|+|++
T Consensus       338 FYIiTEfM~yGNLLdYLRecnr~ev~avvLlyMAtQIsSaMeYLEkkn--FIHRDLAARNCLVg  399 (1157)
T KOG4278|consen  338 FYIITEFMCYGNLLDYLRECNRSEVPAVVLLYMATQISSAMEYLEKKN--FIHRDLAARNCLVG  399 (1157)
T ss_pred             eEEEEecccCccHHHHHHHhchhhcchhHHHHHHHHHHHHHHHHHHhh--hhhhhhhhhhcccc
Confidence            999999999999999999877667888889999999999999999998  99999999999985

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=99.88  E-value=2.5e-22  Score=157.49  Aligned_cols=132  Identities=14%  Similarity=0.222  Sum_probs=109.2

Q ss_pred             CCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcC-CCceeeeeeeeeCCCc-----e
Q psy12580        103 DLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFS-HPNVLPVIGCVNSPPD-----L  174 (239)
Q Consensus       103 ~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~-h~~iv~l~~~~~~~~~-----~  174 (239)
                      +|+..+.||+|+||.||+|...  +..+++|..............+.+|+.+++.+. ||||+++++++...+.     .
T Consensus         2 ~y~~~~~lg~g~~g~vy~~~~~~~~~~v~lK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~~~   81 (295)
T cd07837           2 AYEKLEKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDEEGIPPTALREISLLQMLSESIYIVRLLDVEHVEEKNGKPSL   81 (295)
T ss_pred             CceEeeEecccCCeEEEEEEECCCCcEEEEEeehhhccccCCchHHHHHHHHHHHccCCCCccceeeeEeecCCCCCceE
Confidence            5678889999999999999873  466777876554333333456788999999995 6999999998876655     8


Q ss_pred             EEEEeeCCCCCHHHHhhcCC---CcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        175 VVISQYMAWGSLYALLHEGA---GIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       175 ~lv~e~~~~gsL~~~l~~~~---~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ++||||+++ +|.+++....   +..+++..++.++.||+.||.|||+.+  |+||||||+||+++
T Consensus        82 ~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~--i~H~dl~~~nil~~  144 (295)
T cd07837          82 YLVFEYLDS-DLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCHKHG--VMHRDLKPQNLLVD  144 (295)
T ss_pred             EEEeeccCc-CHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHCC--eeecCCChHHEEEe
Confidence            999999986 8999887532   235899999999999999999999999  99999999999997

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=99.88  E-value=2.5e-22  Score=156.10  Aligned_cols=129  Identities=19%  Similarity=0.322  Sum_probs=110.7

Q ss_pred             CCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEee
Q psy12580        103 DLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQY  180 (239)
Q Consensus       103 ~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~  180 (239)
                      .|...+.||+|+||.||+|...  +..+++|.+.... .....+.+.+|+.+++.+.||||+++++++..++..++|+||
T Consensus         5 ~y~~~~~l~~g~~~~vy~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   83 (277)
T cd06642           5 LFTKLERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEE-AEDEIEDIQQEITVLSQCDSPYITRYYGSYLKGTKLWIIMEY   83 (277)
T ss_pred             HHHHHHHhcCCCCeeEEEEEEcCCCeEEEEEEecccc-chHHHHHHHHHHHHHHcCCCCccHhhhcccccCCceEEEEEc
Confidence            3556778999999999999763  4556667765332 233446788999999999999999999999999999999999


Q ss_pred             CCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        181 MAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       181 ~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +++++|.+++...   .+++..+..++.|++.||.|||+.+  ++|+||+|+||+++
T Consensus        84 ~~~~~L~~~~~~~---~~~~~~~~~~~~~i~~~l~~lH~~~--ivH~dl~p~ni~i~  135 (277)
T cd06642          84 LGGGSALDLLKPG---PLEETYIATILREILKGLDYLHSER--KIHRDIKAANVLLS  135 (277)
T ss_pred             cCCCcHHHHhhcC---CCCHHHHHHHHHHHHHHHHHHhcCC--eeccCCChheEEEe
Confidence            9999999998754   4889999999999999999999999  99999999999986

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=99.88  E-value=7.1e-22  Score=153.62  Aligned_cols=129  Identities=21%  Similarity=0.328  Sum_probs=112.1

Q ss_pred             CCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEee
Q psy12580        103 DLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQY  180 (239)
Q Consensus       103 ~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~  180 (239)
                      .|+..+.+|+|+||.||+|...  +..+++|.+.... .......+.+|+.+++.+.||||+++++++..++..++||||
T Consensus         5 ~y~~~~~lg~g~~~~vy~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   83 (277)
T cd06640           5 LFTKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEE-AEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKGTKLWIIMEY   83 (277)
T ss_pred             hhhhhhhcccCCCeEEEEEEEccCCEEEEEEEEeccc-cHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEEec
Confidence            4567788999999999999873  4667777775432 233456788999999999999999999999999999999999


Q ss_pred             CCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        181 MAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       181 ~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +++|+|.+++...   .+++..+..++.|++.||+|||+.+  ++|+||+|+||+++
T Consensus        84 ~~~~~L~~~i~~~---~l~~~~~~~~~~~l~~~l~~lh~~~--ivH~dl~p~Nil~~  135 (277)
T cd06640          84 LGGGSALDLLRAG---PFDEFQIATMLKEILKGLDYLHSEK--KIHRDIKAANVLLS  135 (277)
T ss_pred             CCCCcHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhCC--ccCcCCChhhEEEc
Confidence            9999999998764   4889999999999999999999999  99999999999987

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=99.88  E-value=3.4e-22  Score=156.47  Aligned_cols=131  Identities=16%  Similarity=0.275  Sum_probs=110.4

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEe
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQ  179 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e  179 (239)
                      .+|...+.||+|+||.||+|..  .++.+++|.+..... ......+.+|+.+++.++|+||+++++++..++..++|+|
T Consensus         5 ~~y~~~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~-~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~lv~e   83 (291)
T cd07870           5 TSYLNLEKLGEGSYATVYKGISRINGQLVALKVISMKTE-EGVPFTAIREASLLKGLKHANIVLLHDIIHTKETLTFVFE   83 (291)
T ss_pred             ceeEEEEEEEecCCEEEEEEEEcCCCcEEEEEEecccCc-CCCcHHHHHHHHHHHhcCCCCEeEEEEEEecCCeEEEEEe
Confidence            5678889999999999999976  467788888755432 2223456789999999999999999999999889999999


Q ss_pred             eCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       180 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |+. ++|.+++..... .+++..+..++.|++.||.|||+.+  |+||||||+|||++
T Consensus        84 ~~~-~~l~~~~~~~~~-~~~~~~~~~~~~qi~~~L~~lH~~~--i~H~dlkp~Nil~~  137 (291)
T cd07870          84 YMH-TDLAQYMIQHPG-GLHPYNVRLFMFQLLRGLAYIHGQH--ILHRDLKPQNLLIS  137 (291)
T ss_pred             ccc-CCHHHHHHhCCC-CCCHHHHHHHHHHHHHHHHHHHhCC--cccCCCChHHEEEc
Confidence            996 688887765432 5788899999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=99.88  E-value=4.5e-22  Score=155.15  Aligned_cols=131  Identities=15%  Similarity=0.284  Sum_probs=111.1

Q ss_pred             CCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEee
Q psy12580        103 DLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQY  180 (239)
Q Consensus       103 ~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~  180 (239)
                      +|+..+.||.|++|.||+|...  +..+++|.+..... ......+.+|+.++++++||||+++++++...+..++||||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   79 (284)
T cd07836           1 NFKQLEKLGEGTYATVYKGRNRTTGEIVALKEIHLDAE-EGTPSTAIREISLMKELKHENIVRLHDVIHTENKLMLVFEY   79 (284)
T ss_pred             CceEeeeeccCCceEEEEEEECCCCeEEEEEEeccccc-ccchHHHHHHHHHHHhhcCCCEeeeeeeEeeCCcEEEEEec
Confidence            3677889999999999999973  56677787765432 22235567899999999999999999999999999999999


Q ss_pred             CCCCCHHHHhhcCC-CcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        181 MAWGSLYALLHEGA-GIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       181 ~~~gsL~~~l~~~~-~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +++ +|.+++.... ...+++..+..++.|++.||.|||+.+  ++||||||+||+++
T Consensus        80 ~~~-~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~--i~h~dl~p~ni~~~  134 (284)
T cd07836          80 MDK-DLKKYMDTHGVRGALDPNTVKSFTYQLLKGIAFCHENR--VLHRDLKPQNLLIN  134 (284)
T ss_pred             CCc-cHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHHCC--eeeCCCCHHHEEEC
Confidence            985 8999887543 235899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=99.88  E-value=5.6e-22  Score=153.93  Aligned_cols=129  Identities=18%  Similarity=0.263  Sum_probs=112.8

Q ss_pred             CCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEee
Q psy12580        103 DLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQY  180 (239)
Q Consensus       103 ~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~  180 (239)
                      +|...+.+|.|++|.||+|..  .+..+++|.+.... .......+.+|+.+++.++|+||+++++++......++|+||
T Consensus         2 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~   80 (274)
T cd06609           2 LFTLLECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEE-AEDEIEDIQQEIQFLSQCRSPYITKYYGSFLKGSKLWIIMEY   80 (274)
T ss_pred             hhhhhhhhcCCCCeEEEEEEECCCCeEEEEEEeeccc-cchHHHHHHHHHHHHHHcCCCCeeeeeEEEEECCeEEEEEEe
Confidence            567788999999999999987  34667778775443 233346688899999999999999999999988999999999


Q ss_pred             CCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        181 MAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       181 ~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +++++|.+++...   .+++..+..++.|++.||.|||+.+  ++|+||+|+||+++
T Consensus        81 ~~~~~L~~~~~~~---~~~~~~~~~~~~ql~~~l~~lh~~~--i~h~dl~p~ni~i~  132 (274)
T cd06609          81 CGGGSCLDLLKPG---KLDETYIAFILREVLLGLEYLHEEG--KIHRDIKAANILLS  132 (274)
T ss_pred             eCCCcHHHHHhhc---CCCHHHHHHHHHHHHHHHHHHHhCC--cccCCCCHHHEEEC
Confidence            9999999999875   4899999999999999999999999  99999999999986

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=99.88  E-value=3.3e-22  Score=158.45  Aligned_cols=123  Identities=17%  Similarity=0.291  Sum_probs=100.5

Q ss_pred             cccccCCCCCCceeeccC----CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeC--CCceEEEEee
Q psy12580        107 HTKISSGPNGDTWRGRWQ----KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNS--PPDLVVISQY  180 (239)
Q Consensus       107 ~~~ig~g~~g~v~~~~~~----~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~--~~~~~lv~e~  180 (239)
                      ..+||+|+||.||+|...    +..+++|.+.....    ...+.+|+.+++.++||||+++++++..  ....++++||
T Consensus         6 ~~~lG~G~~g~Vy~~~~~~~~~~~~~aiK~~~~~~~----~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~   81 (317)
T cd07868           6 GCKVGRGTYGHVYKAKRKDGKDDRDYALKQIEGTGI----SMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDY   81 (317)
T ss_pred             ccccccCCCeEEEEEEEccCCCCceEEEEEECCCCC----cHHHHHHHHHHHhcCCCCCcceeeeEecCCCcEEEEEEec
Confidence            357999999999999853    34567777653322    2446789999999999999999998854  4468999999


Q ss_pred             CCCCCHHHHhhcCC-------CcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCcccee
Q psy12580        181 MAWGSLYALLHEGA-------GIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV  236 (239)
Q Consensus       181 ~~~gsL~~~l~~~~-------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill  236 (239)
                      +.+ +|.+++....       ...+++..+..++.|++.||+|||+.+  |+||||||+|||+
T Consensus        82 ~~~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~--ivHrDlkp~Nil~  141 (317)
T cd07868          82 AEH-DLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANW--VLHRDLKPANILV  141 (317)
T ss_pred             cCC-CHHHHHHhcccccccCCcccCCHHHHHHHHHHHHHHHHHHHhCC--EEcCCCCHHHEEE
Confidence            965 8988876321       125899999999999999999999999  9999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=99.88  E-value=7.9e-22  Score=152.04  Aligned_cols=126  Identities=25%  Similarity=0.343  Sum_probs=102.7

Q ss_pred             ccccCCCCCCceeeccCC-----CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeC-CCceEEEEeeC
Q psy12580        108 TKISSGPNGDTWRGRWQK-----NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNS-PPDLVVISQYM  181 (239)
Q Consensus       108 ~~ig~g~~g~v~~~~~~~-----~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~-~~~~~lv~e~~  181 (239)
                      +.||+|+||.||+|.+.+     ..+++|.+... ......+.+..|..+++.++||||+++++++.. ++..++++||+
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~~   79 (262)
T cd05058           1 RVIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRI-TDLEEVEQFLKEGIIMKDFSHPNVLSLLGICLPSEGSPLVVLPYM   79 (262)
T ss_pred             CcccccCCceEEEEEEecCCCceEEEEEEecCcc-CCHHHHHHHHHHHHHHccCCCCCcceEEEEeecCCCCcEEEEecC
Confidence            358999999999998622     24556665322 223345678889999999999999999997754 45689999999


Q ss_pred             CCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        182 AWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       182 ~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .+|+|.+++..... ..++..+..++.|+++||.|||+.+  ++||||||+|||++
T Consensus        80 ~~~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~l~~lH~~~--i~H~dlk~~nili~  132 (262)
T cd05058          80 KHGDLRNFIRSETH-NPTVKDLIGFGLQVAKGMEYLASKK--FVHRDLAARNCMLD  132 (262)
T ss_pred             CCCCHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHhCC--ccccccCcceEEEc
Confidence            99999999986542 4677888999999999999999999  99999999999986

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=99.88  E-value=3.6e-22  Score=155.70  Aligned_cols=131  Identities=17%  Similarity=0.275  Sum_probs=112.8

Q ss_pred             CcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEeeC
Q psy12580        104 LSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYM  181 (239)
Q Consensus       104 ~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~  181 (239)
                      |+..+.+|+|++|.||+|..  .+..+++|.+............+.+|+.+++.++|||++++++++...+..++++||+
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~~~~iv~~~~~~~~~~~~~iv~e~~   80 (283)
T cd07835           1 YQKVEKIGEGTYGVVYKARDKLTGEIVALKKIRLETEDEGVPSTAIREISLLKELNHPNIVRLLDVVHSENKLYLVFEFL   80 (283)
T ss_pred             CchheEecCCCCeEEEEEEEcCCCCEEEEEEeecccccccchhHHHHHHHHHHhcCCCCccCHhheeccCCeEEEEEecc
Confidence            45677899999999999986  4577778887655433334456788999999999999999999999999999999999


Q ss_pred             CCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        182 AWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       182 ~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      + ++|.+++.......+++..+..++.|+++||+|||+.+  ++|+||+|+||+++
T Consensus        81 ~-~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~lH~~~--~~H~dl~p~nil~~  133 (283)
T cd07835          81 D-LDLKKYMDSSPLTGLDPPLIKSYLYQLLQGIAYCHSHR--VLHRDLKPQNLLID  133 (283)
T ss_pred             C-cCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCC--eeCCCCCHHHEEEc
Confidence            5 59999998765446899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=99.88  E-value=7.9e-22  Score=151.42  Aligned_cols=130  Identities=18%  Similarity=0.272  Sum_probs=115.5

Q ss_pred             CcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCC--CceEEEEe
Q psy12580        104 LSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSP--PDLVVISQ  179 (239)
Q Consensus       104 ~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~--~~~~lv~e  179 (239)
                      |...+.||+|++|.||+|...  +..+++|+...........+.+.+|+..+++++||||+++++.+...  ...++++|
T Consensus         2 ~~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e   81 (260)
T cd06606           2 WTRGELLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYYGSERDEEKNTLNIFLE   81 (260)
T ss_pred             ceeeeEeeecCceEEEEEEECCCCcEEEEEEeeccccchHHHHHHHHHHHHHHHcCCCCEeeEEEEEecCCCCeEEEEEE
Confidence            566788999999999999885  56677788765544345567889999999999999999999999888  78999999


Q ss_pred             eCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       180 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |+++++|.+++....  .+++..+..++.|++.||.|||+.+  ++|+||+|+||+++
T Consensus        82 ~~~~~~L~~~~~~~~--~~~~~~~~~~~~~l~~~l~~lh~~~--~~h~dl~p~ni~i~  135 (260)
T cd06606          82 YVSGGSLSSLLKKFG--KLPEPVIRKYTRQILEGLAYLHSNG--IVHRDIKGANILVD  135 (260)
T ss_pred             ecCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCC--ccccCCCHHHEEEc
Confidence            999999999998776  6899999999999999999999999  99999999999986

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=99.88  E-value=2e-22  Score=156.68  Aligned_cols=131  Identities=17%  Similarity=0.254  Sum_probs=115.1

Q ss_pred             CCcccccccCCCCCCceeecc--CCCceeeeeeeeccC-CchHHHHHHHHHhHhhhcC-CCceeeeeeeeeCCCceEEEE
Q psy12580        103 DLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNC-TPRVSRDFNEEFPKLRIFS-HPNVLPVIGCVNSPPDLVVIS  178 (239)
Q Consensus       103 ~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~-~~~~~~~~~~e~~~l~~l~-h~~iv~l~~~~~~~~~~~lv~  178 (239)
                      +|.+.+.||+|++|.||++..  .+..+++|++..... .....+.+..|..++..+. ||||+++++++...+..++||
T Consensus         2 ~y~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~   81 (280)
T cd05581           2 DFKFGKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGHPGIIKLYYTFQDEENLYFVL   81 (280)
T ss_pred             CceEeeeecCCCceEEEEEEEcCCCCEEEEEEechHhccchHHHHHHHHHHHHHHhcccCCCchhHHHHhcCCceEEEEE
Confidence            577888999999999999987  457777788765332 2333466788999999998 999999999999999999999


Q ss_pred             eeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        179 QYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       179 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||+++++|.+++...+  .+++..+..++.|++.||.|||+.+  ++|+||+|+||+++
T Consensus        82 e~~~~~~L~~~l~~~~--~l~~~~~~~i~~ql~~~l~~Lh~~~--~~H~dl~~~ni~i~  136 (280)
T cd05581          82 EYAPNGELLQYIRKYG--SLDEKCTRFYAAEILLALEYLHSKG--IIHRDLKPENILLD  136 (280)
T ss_pred             cCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCC--eeecCCCHHHeEEC
Confidence            9999999999998876  6999999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=99.88  E-value=4e-22  Score=154.27  Aligned_cols=126  Identities=22%  Similarity=0.396  Sum_probs=106.0

Q ss_pred             cccCCCCCCceeeccCC--------CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEee
Q psy12580        109 KISSGPNGDTWRGRWQK--------NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQY  180 (239)
Q Consensus       109 ~ig~g~~g~v~~~~~~~--------~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~  180 (239)
                      .+|+|+||.||+|...+        ..+++|.+... ........+.+|+.+++.++||||+++++++...+..++||||
T Consensus         2 ~lg~g~~g~vy~~~~~~~~~~~~~~~~~~iK~~~~~-~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~   80 (269)
T cd05044           2 FLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKG-ATDQEKKEFLKEAHLMSNFNHPNIVKLLGVCLLNEPQYIIMEL   80 (269)
T ss_pred             ccccccceeEEeeeecccccCcccceeehhhhhhcc-cchhhHHHHHHHHHHHHhcCCCCeeeEeeeecCCCCeEEEEec
Confidence            58999999999998743        24566766432 2223446788999999999999999999999988899999999


Q ss_pred             CCCCCHHHHhhcCC-----CcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        181 MAWGSLYALLHEGA-----GIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       181 ~~~gsL~~~l~~~~-----~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +++++|.+++....     ...+++..+..++.|++.||.|||+.+  ++|+||||+||+++
T Consensus        81 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~--i~H~dl~p~nil~~  140 (269)
T cd05044          81 MEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLEQMH--FIHRDLAARNCLVS  140 (269)
T ss_pred             cCCCcHHHHHHHhhhcccCCccccHHHHHHHHHHHHHHHHHHHhCC--cccCCCChheEEEe
Confidence            99999999997532     224788999999999999999999999  99999999999986

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>KOG0201|consensus

Probab=99.88  E-value=1.1e-23  Score=163.82  Aligned_cols=131  Identities=20%  Similarity=0.307  Sum_probs=114.7

Q ss_pred             CCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEe
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQ  179 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e  179 (239)
                      ..|...+.||+|+||.||+|..+  ++.+++|++...... .......+|+.++.+++++||.++|+.+..+..+|++||
T Consensus        13 ~~~~~~~~IgrGsfG~Vyk~~d~~t~k~vAiKii~Le~~~-deIediqqei~~Ls~~~~~~it~yygsyl~g~~LwiiMe   91 (467)
T KOG0201|consen   13 LLYTKLELIGRGSFGEVYKAIDNKTKKVVAIKIIDLEEAE-DEIEDIQQEISVLSQCDSPNITEYYGSYLKGTKLWIIME   91 (467)
T ss_pred             cccccchhccccccceeeeeeeccccceEEEEEechhhcc-hhhHHHHHHHHHHHhcCcchHHhhhhheeecccHHHHHH
Confidence            34555689999999999999984  355667888765443 344678899999999999999999999999999999999


Q ss_pred             eCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       180 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||.+|++.+.++...  .+++..+.-++++++.||.|||+.+  .+|||||+.|||+.
T Consensus        92 y~~gGsv~~lL~~~~--~~~E~~i~~ilre~l~~l~ylH~~~--kiHrDIKaanil~s  145 (467)
T KOG0201|consen   92 YCGGGSVLDLLKSGN--ILDEFEIAVILREVLKGLDYLHSEK--KIHRDIKAANILLS  145 (467)
T ss_pred             HhcCcchhhhhccCC--CCccceeeeehHHHHHHhhhhhhcc--eecccccccceeEe
Confidence            999999999999877  5689999999999999999999999  99999999999985

>KOG0577|consensus

Probab=99.88  E-value=3.2e-23  Score=167.05  Aligned_cols=130  Identities=18%  Similarity=0.228  Sum_probs=109.4

Q ss_pred             CcccccccCCCCCCceeeccC--CCceeeeeeeecc-CCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEee
Q psy12580        104 LSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRN-CTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQY  180 (239)
Q Consensus       104 ~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~  180 (239)
                      |.-...||.|+||.||-|+..  ..-|++|.+...+ ......+.++.|+.+|.++.|||++.+-|+|......||||||
T Consensus        28 f~dLrEIGHGSFGAVYfArd~~n~evVAIKKMsySGKQs~EKWqDIlKEVrFL~~l~HPntieYkgCyLre~TaWLVMEY  107 (948)
T KOG0577|consen   28 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDILKEVRFLRQLRHPNTIEYKGCYLREHTAWLVMEY  107 (948)
T ss_pred             HHHHHHhcCCccceeEEeeccCccceeeeeeccccccccHHHHHHHHHHHHHHHhccCCCcccccceeeccchHHHHHHH
Confidence            344567999999999999873  3445557775443 3334457899999999999999999999999999999999999


Q ss_pred             CCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        181 MAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       181 ~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |-| |-.+++.-.. +++.+..+.-|+.+.+.||.|||+.+  .||||||..|||++
T Consensus       108 ClG-SAsDlleVhk-KplqEvEIAAi~~gaL~gLaYLHS~~--~IHRDiKAGNILLs  160 (948)
T KOG0577|consen  108 CLG-SASDLLEVHK-KPLQEVEIAAITHGALQGLAYLHSHN--RIHRDIKAGNILLS  160 (948)
T ss_pred             Hhc-cHHHHHHHHh-ccchHHHHHHHHHHHHHHHHHHHHhh--HHhhhccccceEec
Confidence            955 8888887544 36889999999999999999999999  99999999999985

>PRK10345 hypothetical protein; Provisional

Probab=99.88  E-value=6.5e-22  Score=146.00  Aligned_cols=124  Identities=12%  Similarity=0.159  Sum_probs=96.1

Q ss_pred             CcccccccCCCCCCceeeccCCCceeeeeeeeccCCchHHHHHHHHHhHhhhc-----CCCceeeeeeeeeCCC---c-e
Q psy12580        104 LSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIF-----SHPNVLPVIGCVNSPP---D-L  174 (239)
Q Consensus       104 ~~~~~~ig~g~~g~v~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l-----~h~~iv~l~~~~~~~~---~-~  174 (239)
                      +.-.+.||+|+||.||.-. .....++|++.....  ...+.+.+|+.+++.+     .||||++++|++.++.   . +
T Consensus         4 L~~~~~LG~G~~~~Vy~hp-~~~~k~IKv~~~~~~--~~~~~~~rEi~~l~~L~~~~~~h~nIvr~yg~~et~~g~g~v~   80 (210)
T PRK10345          4 LSEQSPLGTGRHRKCYAHP-EDAQRCIKIVYHRGD--GGDKEIRRELKYYAHLSRRLIDWSGIPRYYGTVETDCGTGYVY   80 (210)
T ss_pred             cCCcceecCCCceEEEECC-CCcCeEEEEEecccc--chHHHHHHHHHHHHHhhccCCCCcccceeeEEEEeCCCCeEEE
Confidence            3456789999999999622 233346777754322  2346789999999999     5799999999998874   3 4


Q ss_pred             EEEEee--CCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHh-hhhhcCCCCcccCCCCCccceee
Q psy12580        175 VVISQY--MAWGSLYALLHEGAGIVVDFAQALRFAVDVARGM-AFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       175 ~lv~e~--~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l-~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .+|+||  +.+|+|.+++.+..   +++.  ..++.|++.++ +|||+.+  ||||||||+|||++
T Consensus        81 ~~I~e~~G~~~~tL~~~l~~~~---~~e~--~~~~~~~L~~l~~yLh~~~--IvhrDlKp~NILl~  139 (210)
T PRK10345         81 DVIADFDGKPSITLTEFAEQCR---YEED--VAQLRQLLKKLKRYLLDNR--IVTMELKPQNILCQ  139 (210)
T ss_pred             EEEecCCCCcchhHHHHHHccc---ccHh--HHHHHHHHHHHHHHHHHCC--EeecCCCHHHEEEe
Confidence            478999  55799999997643   5555  46688888888 9999999  99999999999996

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=99.88  E-value=4.9e-22  Score=156.89  Aligned_cols=134  Identities=19%  Similarity=0.264  Sum_probs=112.0

Q ss_pred             CCCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCC--CceE
Q psy12580        100 SLNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSP--PDLV  175 (239)
Q Consensus       100 ~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~--~~~~  175 (239)
                      +.++|+..+.||+|+||.||+|..  .+..+++|.+............+.+|+.++++++|+||+++++++...  +..+
T Consensus         5 ~~~~y~~~~~ig~g~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~   84 (309)
T cd07845           5 SVTEFEKLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREITLLLNLRHPNIVELKEVVVGKHLDSIF   84 (309)
T ss_pred             cccceeEeeeeeecCCEEEEEEEECCCCcEEEEEEEEeccCCCCCcchhhHHHHHHHhCCCCCCcceEEEEecCCCCeEE
Confidence            457788999999999999999987  356777888765433333334466799999999999999999998654  4689


Q ss_pred             EEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        176 VISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       176 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +||||+++ +|.+++.... ..+++..+..++.|++.||.|||+.+  ++||||||+||+++
T Consensus        85 lv~e~~~~-~l~~~l~~~~-~~l~~~~~~~~~~qi~~~l~~lH~~~--i~H~dl~p~nil~~  142 (309)
T cd07845          85 LVMEYCEQ-DLASLLDNMP-TPFSESQVKCLMLQLLRGLQYLHENF--IIHRDLKVSNLLLT  142 (309)
T ss_pred             EEEecCCC-CHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCCHHHEEEC
Confidence            99999975 8998887643 36899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=99.87  E-value=5.8e-22  Score=158.66  Aligned_cols=131  Identities=15%  Similarity=0.193  Sum_probs=110.1

Q ss_pred             CCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCC------
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP------  172 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~------  172 (239)
                      ...|...+.||+|+||.||++..  .+..+++|.+............+.+|+.+++.++||||+++++++....      
T Consensus        14 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   93 (343)
T cd07880          14 PDRYRDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMKHENVIGLLDVFTPDLSLDRFH   93 (343)
T ss_pred             ccceEEEEEeeecCCeEEEEEEECCCCcEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCccceeeeecCCccccccc
Confidence            35688889999999999999976  4567788877544333334456789999999999999999999886654      


Q ss_pred             ceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        173 DLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       173 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ..++||||+ +++|.+++...   .+++..+..++.|++.||.|||+.+  |+||||||+||+++
T Consensus        94 ~~~lv~e~~-~~~l~~~~~~~---~l~~~~~~~i~~qi~~al~~LH~~g--i~H~dlkp~Nill~  152 (343)
T cd07880          94 DFYLVMPFM-GTDLGKLMKHE---KLSEDRIQFLVYQMLKGLKYIHAAG--IIHRDLKPGNLAVN  152 (343)
T ss_pred             eEEEEEecC-CCCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCCHHHEEEc
Confidence            358999999 66999888753   4899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>PTZ00284 protein kinase; Provisional

Probab=99.87  E-value=5e-22  Score=165.19  Aligned_cols=130  Identities=11%  Similarity=0.182  Sum_probs=104.0

Q ss_pred             CCCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCC------CceeeeeeeeeCC
Q psy12580        100 SLNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSH------PNVLPVIGCVNSP  171 (239)
Q Consensus       100 ~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h------~~iv~l~~~~~~~  171 (239)
                      ...+|.+.+.||+|+||.||+|..  .+..+++|++...   .........|+.+++.+.|      ++++++++++...
T Consensus       127 ~~~~y~i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~~---~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~i~~~~~~~  203 (467)
T PTZ00284        127 STQRFKILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRNV---PKYTRDAKIEIQFMEKVRQADPADRFPLMKIQRYFQNE  203 (467)
T ss_pred             CCCcEEEEEEEEeccCEEEEEEEEcCCCeEEEEEEEecc---hhhHHHHHHHHHHHHHHhhcCcccCcceeeeEEEEEcC
Confidence            346788899999999999999986  3456788887532   1222345567777766644      4588888888654


Q ss_pred             -CceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhc-CCCCcccCCCCCccceee
Q psy12580        172 -PDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS-LERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       172 -~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~-~~~~ivHrdikp~Nill~  237 (239)
                       ..+++|||++ +++|.+++....  .+++..+..++.||+.||+|||+ .|  ||||||||+|||++
T Consensus       204 ~~~~~iv~~~~-g~~l~~~l~~~~--~l~~~~~~~i~~qi~~aL~yLH~~~g--IiHrDlKP~NILl~  266 (467)
T PTZ00284        204 TGHMCIVMPKY-GPCLLDWIMKHG--PFSHRHLAQIIFQTGVALDYFHTELH--LMHTDLKPENILME  266 (467)
T ss_pred             CceEEEEEecc-CCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHhcCC--eecCCCCHHHEEEe
Confidence             4789999998 669999988765  68999999999999999999997 68  99999999999996

>KOG0668|consensus

Probab=99.87  E-value=7.7e-23  Score=147.25  Aligned_cols=126  Identities=17%  Similarity=0.316  Sum_probs=108.6

Q ss_pred             CCCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcC-CCceeeeeeeeeCCC--ce
Q psy12580        100 SLNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFS-HPNVLPVIGCVNSPP--DL  174 (239)
Q Consensus       100 ~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~-h~~iv~l~~~~~~~~--~~  174 (239)
                      +.++|++..++|+|.++.||.|..  ++..+++|++++     -..+...+|+.+|..+. ||||+++++...++.  ..
T Consensus        36 ~~ddYeivrk~GRGKYSEVFeg~~~~~~eK~ViKiLKP-----VkkkKIkREikIL~nL~gg~NIi~L~DiV~Dp~Sktp  110 (338)
T KOG0668|consen   36 NQDDYEIVRKVGRGKYSEVFEGINITNNEKCVIKILKP-----VKKKKIKREIKILQNLRGGPNIIKLLDIVKDPESKTP  110 (338)
T ss_pred             ccchHHHHHHHcCccHhhHhcccccCCCceEEEeeech-----HHHHHHHHHHHHHHhccCCCCeeehhhhhcCccccCc
Confidence            458899999999999999999985  567788888863     23467889999999995 999999999997665  67


Q ss_pred             EEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        175 VVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       175 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .+|+||..+-+...+..     .++...+..++.|+++||+|+|++|  |+|||+||.|++||
T Consensus       111 aLiFE~v~n~Dfk~ly~-----tl~d~dIryY~~elLkALdyCHS~G--ImHRDVKPhNvmId  166 (338)
T KOG0668|consen  111 SLIFEYVNNTDFKQLYP-----TLTDYDIRYYIYELLKALDYCHSMG--IMHRDVKPHNVMID  166 (338)
T ss_pred             hhHhhhhccccHHHHhh-----hhchhhHHHHHHHHHHHHhHHHhcC--cccccCCcceeeec
Confidence            89999999877655543     4778899999999999999999999  99999999999997

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=99.87  E-value=1.1e-21  Score=152.55  Aligned_cols=129  Identities=22%  Similarity=0.338  Sum_probs=110.9

Q ss_pred             CCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEee
Q psy12580        103 DLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQY  180 (239)
Q Consensus       103 ~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~  180 (239)
                      -|...+.||+|+||.||+|..  .+..+++|....... ......+.+|+.++..+.||||+++++++..++..++||||
T Consensus         5 ~~~~~~~ig~G~~~~vy~~~~~~~~~~~aiK~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   83 (277)
T cd06641           5 LFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEA-EDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEY   83 (277)
T ss_pred             hhhhheeEeecCCeEEEEEEECCCCcEEEEEEeccccc-hHHHHHHHHHHHHHHhcCCCCEeEEEEEEEeCCeEEEEEEe
Confidence            456778899999999999976  345667777643322 23346788899999999999999999999999999999999


Q ss_pred             CCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        181 MAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       181 ~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +++++|.+++...   .+++..+..++.|++.||.|||+.+  ++|+||||+||+++
T Consensus        84 ~~~~~l~~~i~~~---~~~~~~~~~~~~~l~~~l~~lh~~~--i~h~dl~p~Ni~i~  135 (277)
T cd06641          84 LGGGSALDLLEPG---PLDETQIATILREILKGLDYLHSEK--KIHRDIKAANVLLS  135 (277)
T ss_pred             CCCCcHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHccCC--eecCCCCHHhEEEC
Confidence            9999999998754   4899999999999999999999999  99999999999986

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=99.87  E-value=3.5e-22  Score=154.05  Aligned_cols=124  Identities=18%  Similarity=0.255  Sum_probs=108.9

Q ss_pred             ccCCCCCCceeeccC--CCceeeeeeeeccC-CchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEeeCCCCCH
Q psy12580        110 ISSGPNGDTWRGRWQ--KNDIVAKILAVRNC-TPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSL  186 (239)
Q Consensus       110 ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~~~gsL  186 (239)
                      +|+|+||.||++...  +..+++|.+..... .......+.+|+.+++.++||||+++++.+......++++||+++++|
T Consensus         1 lg~g~~~~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (265)
T cd05579           1 ISKGAYGRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLYYSFQGKKNLYLVMEYLPGGDL   80 (265)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEecchhhhhhhHHHHHHHHHHHHHhCCCcchhHHHHheecCcEEEEEEecCCCCcH
Confidence            588999999999984  56777888755432 223446788899999999999999999999999999999999999999


Q ss_pred             HHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        187 YALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       187 ~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .+++.+..  .+++..+..++.|++.||.|||+.+  ++|+||+|+||+++
T Consensus        81 ~~~l~~~~--~~~~~~~~~i~~qi~~~L~~lH~~~--i~H~di~~~nil~~  127 (265)
T cd05579          81 ASLLENVG--SLDEDVARIYIAEIVLALEYLHSNG--IIHRDLKPDNILID  127 (265)
T ss_pred             HHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHcC--eecCCCCHHHeEEc
Confidence            99998765  6899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=99.87  E-value=4.3e-22  Score=156.38  Aligned_cols=127  Identities=18%  Similarity=0.272  Sum_probs=109.7

Q ss_pred             CcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEeeC
Q psy12580        104 LSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYM  181 (239)
Q Consensus       104 ~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~  181 (239)
                      +.....||+|+||.||++..  .+..+++|.+.....  ...+.+.+|+.++..+.|||++++++++..++..++++||+
T Consensus        23 ~~~~~~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~~~--~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~iv~e~~  100 (297)
T cd06659          23 LENYIKIGEGSTGIVCIAREKHSGRQVAVKMMDLRKQ--QRRELLFNEVVIMRDYQHQNVVEMYKSYLVGEELWVLMEFL  100 (297)
T ss_pred             HHhhhhcCCCCceeEEEEEEcCCCCEEEEEEEEeccc--chHHHHHHHHHHHHhCCCCchhhhhhheeeCCeEEEEEecC
Confidence            34455799999999999976  467788888755432  23356788999999999999999999999999999999999


Q ss_pred             CCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        182 AWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       182 ~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ++++|.+++...   .+++..++.++.|++.||.|||+.+  ++||||||+||+++
T Consensus       101 ~~~~L~~~~~~~---~~~~~~~~~~~~qi~~~L~~LH~~~--ivH~dl~p~Nill~  151 (297)
T cd06659         101 QGGALTDIVSQT---RLNEEQIATVCESVLQALCYLHSQG--VIHRDIKSDSILLT  151 (297)
T ss_pred             CCCCHHHHHhhc---CCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCCHHHeEEc
Confidence            999999988653   4899999999999999999999999  99999999999987

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=99.87  E-value=1e-21  Score=154.18  Aligned_cols=129  Identities=19%  Similarity=0.307  Sum_probs=113.1

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEe
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQ  179 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e  179 (239)
                      ..|...+.+|.|++|.||++..  .++.+++|.+....  ....+.+.+|+..++.++|||++++++++...+..++|+|
T Consensus        19 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~--~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   96 (296)
T cd06655          19 KKYTRYEKIGQGASGTVFTAIDVATGQEVAIKQINLQK--QPKKELIINEILVMKELKNPNIVNFLDSFLVGDELFVVME   96 (296)
T ss_pred             ceEEEEEEEecCCCeEEEEEEEcCCCcEEEEEEEeccc--CchHHHHHHHHHHHHhcCCCceeeeeeeEecCceEEEEEE
Confidence            4578888999999999999975  45677888775432  2234567889999999999999999999999999999999


Q ss_pred             eCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       180 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |+.+++|..++...   .+++.++..++.|++.||.|||+.+  ++|+||||+||+++
T Consensus        97 ~~~~~~L~~~~~~~---~l~~~~~~~i~~~l~~al~~LH~~~--i~H~dL~p~Nili~  149 (296)
T cd06655          97 YLAGGSLTDVVTET---CMDEAQIAAVCRECLQALEFLHANQ--VIHRDIKSDNVLLG  149 (296)
T ss_pred             ecCCCcHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCCHHHEEEC
Confidence            99999999998764   4899999999999999999999999  99999999999986

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=99.87  E-value=3.5e-22  Score=156.48  Aligned_cols=129  Identities=17%  Similarity=0.267  Sum_probs=110.6

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEe
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQ  179 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e  179 (239)
                      +.+.....||+|+||.||++..  .+..+++|.+....  ....+.+.+|+..++.++||||+++++.+..++..++|||
T Consensus        22 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~lv~e   99 (292)
T cd06658          22 EYLDSFIKIGEGSTGIVCIATEKHTGKQVAVKKMDLRK--QQRRELLFNEVVIMRDYHHENVVDMYNSYLVGDELWVVME   99 (292)
T ss_pred             HHHhhhhcccCCCCeEEEEEEECCCCCEEEEEEEecch--HHHHHHHHHHHHHHHhCCCCcHHHHHHheecCCeEEEEEe
Confidence            4445567799999999999976  45667778765432  2334668899999999999999999999999999999999


Q ss_pred             eCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       180 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |+++++|.+++...   .+++..+..++.|++.||+|||+.+  |+||||||+||+++
T Consensus       100 ~~~~~~L~~~~~~~---~l~~~~~~~~~~qi~~~l~~LH~~~--ivH~dlkp~Nill~  152 (292)
T cd06658         100 FLEGGALTDIVTHT---RMNEEQIATVCLSVLRALSYLHNQG--VIHRDIKSDSILLT  152 (292)
T ss_pred             CCCCCcHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHCC--EeecCCCHHHEEEc
Confidence            99999999988654   4889999999999999999999999  99999999999986

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=99.87  E-value=6.4e-22  Score=156.16  Aligned_cols=133  Identities=15%  Similarity=0.290  Sum_probs=110.2

Q ss_pred             CCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCC------
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP------  172 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~------  172 (239)
                      .++|...+.||+|+||.||+|..  .+..+++|.+............+.+|+.++++++||||+++++++...+      
T Consensus        11 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   90 (310)
T cd07865          11 VSKYEKLAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPYNRY   90 (310)
T ss_pred             hhheEEEEEeecCCCEEEEEEEECCCCcEEEEEEEeccCCcCCchhHHHHHHHHHHhCCCCCccceEEEEecccccccCC
Confidence            45688889999999999999987  3567777877554333333345668999999999999999999886554      


Q ss_pred             --ceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        173 --DLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       173 --~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                        ..++||||+.+ +|.+++.... ..+++..++.++.|+++||.|||+.+  ++|+||||+||+++
T Consensus        91 ~~~~~lv~e~~~~-~l~~~l~~~~-~~~~~~~~~~i~~qi~~al~~lH~~~--i~H~dl~p~nil~~  153 (310)
T cd07865          91 KGSFYLVFEFCEH-DLAGLLSNKN-VKFTLSEIKKVMKMLLNGLYYIHRNK--ILHRDMKAANILIT  153 (310)
T ss_pred             CceEEEEEcCCCc-CHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHHCC--eeccCCCHHHEEEC
Confidence              45999999965 8988887654 25899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=99.87  E-value=1.4e-21  Score=152.80  Aligned_cols=132  Identities=15%  Similarity=0.262  Sum_probs=109.8

Q ss_pred             CCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCC--CceEEEE
Q psy12580        103 DLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSP--PDLVVIS  178 (239)
Q Consensus       103 ~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~--~~~~lv~  178 (239)
                      +|...+.+|.|++|.||++...  +..+++|.+..... ......+.+|+.+++.++||||+++++++...  +.+++||
T Consensus         2 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~   80 (287)
T cd06621           2 KIVELSRLGEGAGGSVTKCRLKNTGMIFALKTITTDPN-PDLQKQILRELEINKSCKSPYIVKYYGAFLDESSSSIGIAM   80 (287)
T ss_pred             ceEEEEEeccCCceEEEEEEECCCCeEEEEEEEecCCc-hHHHHHHHHHHHHHHhCCCCCeeeeeeEEEccCCCeEEEEE
Confidence            4667789999999999999873  45666777754322 34456788999999999999999999988543  3789999


Q ss_pred             eeCCCCCHHHHhhc--CCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        179 QYMAWGSLYALLHE--GAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       179 e~~~~gsL~~~l~~--~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||+++++|.+++..  .....+++..+..++.|++.||.|||+.+  ++|+||+|+||+++
T Consensus        81 e~~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~lH~~~--i~H~dl~~~nil~~  139 (287)
T cd06621          81 EYCEGGSLDSIYKKVKKRGGRIGEKVLGKIAESVLKGLSYLHSRK--IIHRDIKPSNILLT  139 (287)
T ss_pred             EecCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCCHHHEEEe
Confidence            99999999998764  22235889999999999999999999999  99999999999986

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=99.87  E-value=8.3e-22  Score=151.27  Aligned_cols=132  Identities=17%  Similarity=0.311  Sum_probs=114.1

Q ss_pred             CcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEeeC
Q psy12580        104 LSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYM  181 (239)
Q Consensus       104 ~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~  181 (239)
                      |++.+.+|+|++|.+|++..  .+..+++|.+............+..|+.+++.++|+||+++++++......++|+||+
T Consensus         2 y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~   81 (256)
T cd08530           2 FKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPNIISYKEAFLDGNKLCIVMEYA   81 (256)
T ss_pred             ceEeeeecCCCceeEEEEEECCCCCEEEEEEEehhhccHHHHHHHHHHHHHHHhCCCCCchhhhhhhccCCEEEEEehhc
Confidence            56778899999999999976  3456777887655444555567888999999999999999999998889999999999


Q ss_pred             CCCCHHHHhhcCC--CcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        182 AWGSLYALLHEGA--GIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       182 ~~gsL~~~l~~~~--~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ++++|.+++....  +..+++..++.++.|++.||.|||+.|  ++|+||+|+||+++
T Consensus        82 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lh~~~--i~h~~l~~~ni~~~  137 (256)
T cd08530          82 PFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALHEQK--ILHRDLKSANILLV  137 (256)
T ss_pred             CCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhCC--cccCCCCcceEEEe
Confidence            9999999987621  236899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=99.87  E-value=3.3e-22  Score=159.53  Aligned_cols=131  Identities=18%  Similarity=0.284  Sum_probs=110.8

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeC----CCceE
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNS----PPDLV  175 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~----~~~~~  175 (239)
                      .+|.+.+.||+|++|.||++..  .+..+++|.+............+.+|+.+++.++||||+++++++..    ....+
T Consensus         5 ~~y~~~~~lg~g~~g~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~   84 (334)
T cd07855           5 SRYKPIENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKRTLRELKILRHFKHDNIIAIRDILRPPGADFKDVY   84 (334)
T ss_pred             hceeeeeeeecCCCeEEEEEEEcCCCCEEEEEEeccccccccchHHHHHHHHHHHhcCCCCccCHHHhccccCCCCceEE
Confidence            5677888999999999999986  46777888876543333445667789999999999999999988753    34689


Q ss_pred             EEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        176 VISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       176 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +|+||+. |+|.+++....  .+++..+..++.|++.||.|||+.+  |+||||||+||+++
T Consensus        85 lv~e~~~-~~l~~~~~~~~--~~~~~~~~~i~~qi~~aL~~LH~~~--ivH~dlkp~Nil~~  141 (334)
T cd07855          85 VVMDLME-SDLHHIIHSDQ--PLTEEHIRYFLYQLLRGLKYIHSAN--VIHRDLKPSNLLVN  141 (334)
T ss_pred             EEEehhh-hhHHHHhccCC--CCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCCHHHEEEc
Confidence            9999996 59999987665  5899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=99.87  E-value=8.5e-22  Score=153.54  Aligned_cols=133  Identities=17%  Similarity=0.312  Sum_probs=110.4

Q ss_pred             CCCCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhc-CCCceeeeeeeeeC------
Q psy12580        100 SLNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIF-SHPNVLPVIGCVNS------  170 (239)
Q Consensus       100 ~~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~l~~~~~~------  170 (239)
                      ....|++.+.+|+|+||.||+|...  +..+++|+....   ......+..|+.++..+ +|+||+++++++..      
T Consensus        14 ~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~~---~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~   90 (282)
T cd06636          14 PAGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVT---EDEEEEIKLEINMLKKYSHHRNIATYYGAFIKKSPPGH   90 (282)
T ss_pred             hhhhhhhheeeccCCCeEEEEEEEcCCCcEEEEEEEecC---hHHHHHHHHHHHHHHHhcCCCcEEEEeeehhcccccCC
Confidence            3466788889999999999999873  355666766432   22335677889999888 69999999998853      


Q ss_pred             CCceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        171 PPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       171 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ....+++|||+++|+|.+++.......+++..+..++.|++.||.|||+.+  |+|+||||+||+++
T Consensus        91 ~~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~--ivH~dl~~~nili~  155 (282)
T cd06636          91 DDQLWLVMEFCGAGSVTDLVKNTKGNALKEDWIAYICREILRGLAHLHAHK--VIHRDIKGQNVLLT  155 (282)
T ss_pred             CCEEEEEEEeCCCCcHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCCHHHEEEC
Confidence            347899999999999999998755446889999999999999999999999  99999999999986

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>PHA03210 serine/threonine kinase US3; Provisional

Probab=99.87  E-value=3.3e-22  Score=167.13  Aligned_cols=134  Identities=14%  Similarity=0.266  Sum_probs=102.8

Q ss_pred             CCCCcccccccCCCCCCceeeccCCCc---eeee--------------eeeec-cCCchHHHHHHHHHhHhhhcCCCcee
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRWQKND---IVAK--------------ILAVR-NCTPRVSRDFNEEFPKLRIFSHPNVL  162 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~~~~~---~~vk--------------~~~~~-~~~~~~~~~~~~e~~~l~~l~h~~iv  162 (239)
                      ..+|.+.+.||+|+||.||++..+...   .+.|              .+... .........+.+|+.++..++||||+
T Consensus       147 ~~~Y~ii~~LG~G~fG~Vyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~Ei~il~~l~HpnIv  226 (501)
T PHA03210        147 LAHFRVIDDLPAGAFGKIFICALRASTEEAEARRGVNSTNQGKPKCERLIAKRVKAGSRAAIQLENEILALGRLNHENIL  226 (501)
T ss_pred             hhccEEEeEecCCCCcceEEEEEeccchhhhhhhccccccccchhhhhhHhHHhhcchHHHHHHHHHHHHHHhCCCCCcC
Confidence            367889999999999999988653211   1111              01110 11222345678999999999999999


Q ss_pred             eeeeeeeCCCceEEEEeeCCCCCHHHHhhcCC---CcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        163 PVIGCVNSPPDLVVISQYMAWGSLYALLHEGA---GIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       163 ~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~---~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ++++++...+..++|+|++.+ +|.+++....   ........+..++.|++.||+|||+.+  ||||||||+|||++
T Consensus       227 ~l~~~~~~~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~~~~~i~~ql~~aL~yLH~~g--IiHrDLKP~NILl~  301 (501)
T PHA03210        227 KIEEILRSEANTYMITQKYDF-DLYSFMYDEAFDWKDRPLLKQTRAIMKQLLCAVEYIHDKK--LIHRDIKLENIFLN  301 (501)
T ss_pred             cEeEEEEECCeeEEEEecccc-CHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHhCC--eecCCCCHHHEEEC
Confidence            999999999999999999954 8888876432   112346678899999999999999999  99999999999986

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=99.87  E-value=1.7e-21  Score=151.48  Aligned_cols=129  Identities=19%  Similarity=0.303  Sum_probs=110.9

Q ss_pred             CCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcC---CCceeeeeeeeeCCCceEEE
Q psy12580        103 DLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFS---HPNVLPVIGCVNSPPDLVVI  177 (239)
Q Consensus       103 ~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~---h~~iv~l~~~~~~~~~~~lv  177 (239)
                      .|+..+.+|+|+||.||+|..  .+..+++|.+.... .......+.+|+.+++.+.   |||++++++++......++|
T Consensus         2 ~y~~~~~l~~g~~g~v~~~~~~~~~~~~~iK~~~~~~-~~~~~~~~~~e~~~l~~l~~~~~~~vi~~~~~~~~~~~~~lv   80 (277)
T cd06917           2 LYQRLELIGRGAYGAVYRGKHVPTGRVVALKIINLDT-PDDDVSDIQREVALLSQLRQSQPPNITKYYGSYLKGPRLWII   80 (277)
T ss_pred             hhhhhhheeccCCceEEEEEEcCCCcEEEEEEecCCC-CchhHHHHHHHHHHHHHhccCCCCCeeeEeeeeeeCCEEEEE
Confidence            356778899999999999987  45667778775432 2333456788999998886   99999999999988899999


Q ss_pred             EeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        178 SQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       178 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |||+++++|.++++..   .+++..+..++.|++.||.|||+.+  |+|+||+|+||+++
T Consensus        81 ~e~~~~~~L~~~~~~~---~l~~~~~~~i~~~i~~~l~~lh~~~--i~H~dl~p~ni~i~  135 (277)
T cd06917          81 MEYAEGGSVRTLMKAG---PIAEKYISVIIREVLVALKYIHKVG--VIHRDIKAANILVT  135 (277)
T ss_pred             EecCCCCcHHHHHHcc---CCCHHHHHHHHHHHHHHHHHHHhCC--cccCCcCHHHEEEc
Confidence            9999999999998764   4899999999999999999999999  99999999999987

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=99.87  E-value=7.6e-22  Score=155.25  Aligned_cols=133  Identities=16%  Similarity=0.297  Sum_probs=111.3

Q ss_pred             CCCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCC------
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP------  172 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~------  172 (239)
                      .++|++.+.+|+|+||.||+|...  +..+++|.+............+.+|+.+++.++||||+++++++....      
T Consensus         6 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~~~~~~~~~~~~~~~~   85 (302)
T cd07864           6 VDKFDIIGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLNHRNIVNLKEIVTDKQDALDFK   85 (302)
T ss_pred             hhhhheeeeecccCCEEEEEEEECCCCcEEEEEEEeecccccCchHHHHHHHHHHHhCCCCCeeeeeheecCcchhhhcc
Confidence            467788899999999999999973  466777887654333333456778999999999999999999886654      


Q ss_pred             ----ceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        173 ----DLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       173 ----~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                          .+++|+||+++ ++.+++.... ..+++..+..++.|++.||.|||+.+  |+|+||||+||+++
T Consensus        86 ~~~~~~~lv~e~~~~-~l~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH~~~--i~H~dl~p~nili~  150 (302)
T cd07864          86 KDKGAFYLVFEYMDH-DLMGLLESGL-VHFSEDHIKSFMKQLLEGLNYCHKKN--FLHRDIKCSNILLN  150 (302)
T ss_pred             ccCCcEEEEEcccCc-cHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCCHHHEEEC
Confidence                79999999976 7888777643 25899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=99.87  E-value=7.8e-22  Score=156.12  Aligned_cols=131  Identities=15%  Similarity=0.259  Sum_probs=108.5

Q ss_pred             CcccccccCCCCCCceeeccC----CCceeeeeeeecc-CCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCC--CceEE
Q psy12580        104 LSLHTKISSGPNGDTWRGRWQ----KNDIVAKILAVRN-CTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSP--PDLVV  176 (239)
Q Consensus       104 ~~~~~~ig~g~~g~v~~~~~~----~~~~~vk~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~--~~~~l  176 (239)
                      |.+.+.||+|++|.||+|...    +..+++|.+.... ........+.+|+.++..++||||+++++++...  ...++
T Consensus         2 y~~~~~ig~g~~g~v~~~~~~~~~~~~~~alK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l   81 (316)
T cd07842           2 YEIEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRELKHENVVSLVEVFLEHADKSVYL   81 (316)
T ss_pred             ceEEEEeccCCcEEEEEEEecCCCCCCeEEEEEeccccccccCccHHHHHHHHHHHhcCCCCccceEEEEeCCCCceEEE
Confidence            567788999999999999873    4677888886532 1122335677899999999999999999999888  78999


Q ss_pred             EEeeCCCCCHHHHhhcCC---CcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        177 ISQYMAWGSLYALLHEGA---GIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       177 v~e~~~~gsL~~~l~~~~---~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||||+++ +|.+++....   ...+++..++.++.|++.||.|||+.+  |+||||||+|||++
T Consensus        82 v~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~--i~h~dlkp~Nil~~  142 (316)
T cd07842          82 LFDYAEH-DLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVHYLHSNW--VLHRDLKPANILVM  142 (316)
T ss_pred             EEeCCCc-CHHHHHHhhccCCCcCcCHHHHHHHHHHHHHHHHHHHhCC--EeeCCCCHHHEEEc
Confidence            9999975 7877775322   125899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>KOG1035|consensus

Probab=99.87  E-value=1.2e-22  Score=174.71  Aligned_cols=131  Identities=18%  Similarity=0.257  Sum_probs=109.2

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCC--------
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSP--------  171 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~--------  171 (239)
                      .+|+..+.+|+|+||.||+++.  .|..+|+|.+.... .........+|+..+.+++|||||+++..+...        
T Consensus       479 ~DFEEL~lLGkGGFG~VvkVRNKlDGr~YAIKKIpl~~-s~~~~skI~rEVk~LArLnHpNVVRYysAWVEs~~~~~~~e  557 (1351)
T KOG1035|consen  479 NDFEELELLGKGGFGSVVKVRNKLDGREYAIKKIPLKA-SDKLYSKILREVKLLARLNHPNVVRYYSAWVESTAELTVLE  557 (1351)
T ss_pred             hhhHHHHHhcCCCCceEEEEeecccchhhhhhhccCch-HHHHHHHHHHHHHHHhhcCCcceeeeehhhhccCCcccccc
Confidence            5677888999999999999986  78999999997765 444456788999999999999999997654210        


Q ss_pred             --------------------------------------------------------------------------------
Q psy12580        172 --------------------------------------------------------------------------------  171 (239)
Q Consensus       172 --------------------------------------------------------------------------------  171 (239)
                                                                                                      
T Consensus       558 i~~~~~~~~sQs~s~~~~~~~~~q~t~~p~~~~~~~~~~~~dd~sss~~~~~~~~~~~~d~e~~d~dedg~~~S~tS~~e  637 (1351)
T KOG1035|consen  558 IVASDSESRSQSASKYNGVDIRYQPTSSPSLTLSELDSEDEDDKSSSYTTRKASYESSTDEENDDSDEDGRNLSNTSDSE  637 (1351)
T ss_pred             ccccchhhhcccCCCcccceeeeccCCCcccCcchhhccccCccccccccccccccccCCcccccccccccccccccccC
Confidence                                                                                            


Q ss_pred             -------------------------------CceEEEEeeCCCCCHHHHhhcCCCccc-CHHHHHHHHHHHHHHhhhhhc
Q psy12580        172 -------------------------------PDLVVISQYMAWGSLYALLHEGAGIVV-DFAQALRFAVDVARGMAFLHS  219 (239)
Q Consensus       172 -------------------------------~~~~lv~e~~~~gsL~~~l~~~~~~~~-~~~~~~~~~~~i~~~l~~lH~  219 (239)
                                                     ..+||-||||+...|.++++++.  .. .....+++++||+.||.|+|+
T Consensus       638 ~~~~~d~~~ess~s~~~~~n~~e~~~~~q~~~~LYIQMEyCE~~ll~~iI~~N~--~~~~~d~~wrLFreIlEGLaYIH~  715 (1351)
T KOG1035|consen  638 GSVILDDTSESSESIPKTENSSEPMVPVQKPLILYIQMEYCEKTLLRDIIRRNH--FNSQRDEAWRLFREILEGLAYIHD  715 (1351)
T ss_pred             CccccCcchhhhhhccccCCccccccccccceEEEEEHhhhhhhHHHHHHHhcc--cchhhHHHHHHHHHHHHHHHHHHh
Confidence                                           01589999999977777777655  22 467889999999999999999


Q ss_pred             CCCCcccCCCCCccceee
Q psy12580        220 LERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       220 ~~~~ivHrdikp~Nill~  237 (239)
                      +|  ||||||||.|||||
T Consensus       716 ~g--iIHRDLKP~NIFLd  731 (1351)
T KOG1035|consen  716 QG--IIHRDLKPRNIFLD  731 (1351)
T ss_pred             Cc--eeeccCCcceeEEc
Confidence            99  99999999999997

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=99.87  E-value=1.6e-21  Score=152.31  Aligned_cols=131  Identities=18%  Similarity=0.300  Sum_probs=115.0

Q ss_pred             CCCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEE
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVIS  178 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~  178 (239)
                      ...|...+.+|+|++|.||++.+.  +..+++|++.....   ....+..|+..++.++|+|++++++.+...+..++++
T Consensus        18 ~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~---~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~   94 (286)
T cd06614          18 RELYKNLEKIGEGASGEVYKATDRATGKEVAIKKMRLRKQ---NKELIINEILIMKDCKHPNIVDYYDSYLVGDELWVVM   94 (286)
T ss_pred             cccchHhHhccCCCCeEEEEEEEccCCcEEEEEEEecCch---hHHHHHHHHHHHHHCCCCCeeEEEEEEEECCEEEEEE
Confidence            355777889999999999999885  56777788764322   3466888999999999999999999999999999999


Q ss_pred             eeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        179 QYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       179 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||+++++|.+++.... ..+++..+..++.|++.||.|||+.|  ++|+||+|+||+++
T Consensus        95 e~~~~~~L~~~l~~~~-~~l~~~~~~~i~~~i~~~L~~lH~~g--i~H~dl~p~ni~i~  150 (286)
T cd06614          95 EYMDGGSLTDIITQNF-VRMNEPQIAYVCREVLQGLEYLHSQN--VIHRDIKSDNILLS  150 (286)
T ss_pred             eccCCCcHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHhCC--eeeCCCChhhEEEc
Confidence            9999999999998764 35899999999999999999999999  99999999999986

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=99.87  E-value=1.7e-21  Score=151.52  Aligned_cols=125  Identities=17%  Similarity=0.146  Sum_probs=101.5

Q ss_pred             cccCCCCCCceeecc--CCCceeeeeeeeccCCc-hHHHHHHHHHh---HhhhcCCCceeeeeeeeeCCCceEEEEeeCC
Q psy12580        109 KISSGPNGDTWRGRW--QKNDIVAKILAVRNCTP-RVSRDFNEEFP---KLRIFSHPNVLPVIGCVNSPPDLVVISQYMA  182 (239)
Q Consensus       109 ~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~-~~~~~~~~e~~---~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~~  182 (239)
                      .||+|+||.||++..  .++.+++|.+....... .....+..|..   .++...||+|+++++++...+..++||||+.
T Consensus         1 ~ig~g~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~   80 (278)
T cd05606           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMN   80 (278)
T ss_pred             CcccCCCeEEEEEEEecCCCEEEEEEeeccccccchhHHHHHHHHHHHHHHHhCCCCcEeeeeeeeecCCEEEEEEecCC
Confidence            379999999999876  45678888876543221 11222333433   3444579999999999999999999999999


Q ss_pred             CCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        183 WGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       183 ~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +|+|.+++....  .+++..+..++.|+++||.|||+.+  |+||||||+||+++
T Consensus        81 g~~L~~~l~~~~--~l~~~~~~~~~~ql~~~l~~lH~~~--i~H~di~p~nili~  131 (278)
T cd05606          81 GGDLHYHLSQHG--VFSEAEMRFYAAEIILGLEHMHNRF--VVYRDLKPANILLD  131 (278)
T ss_pred             CCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCC--EEcCCCCHHHEEEC
Confidence            999999987655  6899999999999999999999999  99999999999985

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=99.87  E-value=1.3e-21  Score=154.96  Aligned_cols=122  Identities=16%  Similarity=0.293  Sum_probs=99.5

Q ss_pred             ccccCCCCCCceeeccCC----CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeC--CCceEEEEeeC
Q psy12580        108 TKISSGPNGDTWRGRWQK----NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNS--PPDLVVISQYM  181 (239)
Q Consensus       108 ~~ig~g~~g~v~~~~~~~----~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~--~~~~~lv~e~~  181 (239)
                      ..||+|+||.||+|...+    ..+++|.+.....    ...+.+|+.+++.++||||+++++++..  ....++|+||+
T Consensus         7 ~~lG~G~~g~Vy~~~~~~~~~~~~~a~k~~~~~~~----~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~   82 (317)
T cd07867           7 CKVGRGTYGHVYKAKRKDGKDEKEYALKQIEGTGI----SMSACREIALLRELKHPNVIALQKVFLSHSDRKVWLLFDYA   82 (317)
T ss_pred             eEeccCCCeeEEEEEecCCCccceEEEEEecCCCC----cHHHHHHHHHHHhCCCCCeeeEEEEEeccCCCeEEEEEeee
Confidence            579999999999998632    4566676643321    2456789999999999999999998853  45789999999


Q ss_pred             CCCCHHHHhhcC-------CCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCcccee
Q psy12580        182 AWGSLYALLHEG-------AGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV  236 (239)
Q Consensus       182 ~~gsL~~~l~~~-------~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill  236 (239)
                      ++ +|.+++...       ....+++..+..++.|++.||.|||+.+  |+||||||+|||+
T Consensus        83 ~~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~~--ivH~Dlkp~Nil~  141 (317)
T cd07867          83 EH-DLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLHANW--VLHRDLKPANILV  141 (317)
T ss_pred             CC-cHHHHHHhhhccccCCCCccCCHHHHHHHHHHHHHHHHHHHhCC--EEcCCCCHHHEEE
Confidence            65 888887532       1124889999999999999999999999  9999999999998

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=99.87  E-value=1.7e-21  Score=150.02  Aligned_cols=126  Identities=16%  Similarity=0.184  Sum_probs=103.5

Q ss_pred             ccccCCCCCCceeecc--CCCceeeeeeeeccCC-chHHHHHHHHHhHhh-hcCCCceeeeeeeeeCCCceEEEEeeCCC
Q psy12580        108 TKISSGPNGDTWRGRW--QKNDIVAKILAVRNCT-PRVSRDFNEEFPKLR-IFSHPNVLPVIGCVNSPPDLVVISQYMAW  183 (239)
Q Consensus       108 ~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~-~~~~~~~~~e~~~l~-~l~h~~iv~l~~~~~~~~~~~lv~e~~~~  183 (239)
                      +.+|+|++|.||+|..  .++.+++|.+...... ......+..|..++. ...|+|++++++++...+..++|+||+++
T Consensus         2 ~~l~~g~~~~v~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   81 (260)
T cd05611           2 KPISKGAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKLYYSFQSKDYLYLVMEYLNG   81 (260)
T ss_pred             ccCCcCCCeeEEEEEecCCCCeEEEEEecchhhhHHHHHHHHHHHHHHHhhcCCCCCeeeeeeeEEcCCeEEEEEeccCC
Confidence            4689999999999987  4567788887543221 122233445554443 45899999999999999999999999999


Q ss_pred             CCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        184 GSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       184 gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ++|.+++....  .+++..+..++.|++.||.|||+.+  ++|+||+|+||+++
T Consensus        82 ~~L~~~l~~~~--~~~~~~~~~i~~qi~~aL~~lH~~~--i~H~dl~p~nil~~  131 (260)
T cd05611          82 GDCASLIKTLG--GLPEDWAKQYIAEVVLGVEDLHQRG--IIHRDIKPENLLID  131 (260)
T ss_pred             CCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCCHHHeEEC
Confidence            99999998765  6899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=99.87  E-value=1.6e-21  Score=152.83  Aligned_cols=130  Identities=19%  Similarity=0.296  Sum_probs=112.4

Q ss_pred             CCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEE
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVIS  178 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~  178 (239)
                      ...|.+.+.+|+|+||.||++..  .+..+++|.+....  ....+.+.+|+.+++.++||||+++++.+...+..++|+
T Consensus        18 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~--~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~   95 (293)
T cd06647          18 KKKYTRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQ--QPKKELIINEILVMRENKHPNIVNYLDSYLVGDELWVVM   95 (293)
T ss_pred             hhhceeeeEecCCCCeEEEEEEEcCCCCEEEEEEecccc--chHHHHHHHHHHHHhhcCCCCeeehhheeeeCCcEEEEE
Confidence            35677888999999999999975  45667778775332  223466888999999999999999999999999999999


Q ss_pred             eeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        179 QYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       179 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||+++++|.+++....   +++..+..++.|++.||.|||+.+  ++||||||+||+++
T Consensus        96 e~~~~~~L~~~~~~~~---l~~~~~~~i~~~l~~al~~LH~~g--i~H~dL~p~Nili~  149 (293)
T cd06647          96 EYLAGGSLTDVVTETC---MDEGQIAAVCRECLQALEFLHSNQ--VIHRDIKSDNILLG  149 (293)
T ss_pred             ecCCCCcHHHHHhhcC---CCHHHHHHHHHHHHHHHHHHHhCC--EeeccCCHHHEEEc
Confidence            9999999999997643   788999999999999999999999  99999999999985

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>KOG4645|consensus

Probab=99.87  E-value=5.1e-23  Score=178.02  Aligned_cols=130  Identities=18%  Similarity=0.300  Sum_probs=114.2

Q ss_pred             cccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEeeCC
Q psy12580        105 SLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMA  182 (239)
Q Consensus       105 ~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~~  182 (239)
                      +....||.|.||.||.|...  |...++|-+..+.......+...+|..++..++|||+|++||+-...+..+|-||||+
T Consensus      1238 qrg~~Ig~G~fG~VYtavN~~tGellAvKEI~iq~~~~k~~~~i~eEm~vlE~lnHpNlV~YyGVEvHRekv~IFMEyC~ 1317 (1509)
T KOG4645|consen 1238 QRGNFIGGGTFGKVYTAVNLDTGELLAVKEIKIQDSDHKTFKLIAEEMKVLEGLNHPNLVRYYGVEVHREKVYIFMEYCE 1317 (1509)
T ss_pred             ccccccCCcceeeeEEeecCCccchhhhhhhhcCccccccCcchHHHHHHHHhccCccccccCceeecHHHHHHHHHHhc
Confidence            44567999999999999873  3445567776665555556778899999999999999999999999999999999999


Q ss_pred             CCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceeec
Q psy12580        183 WGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVYI  238 (239)
Q Consensus       183 ~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~~  238 (239)
                      +|+|.+.+..++  ..++.....+..|++.|+.|||+.|  ||||||||.||+||+
T Consensus      1318 ~GsLa~ll~~gr--i~dE~vt~vyt~qll~gla~LH~~g--IVHRDIK~aNI~Ld~ 1369 (1509)
T KOG4645|consen 1318 GGSLASLLEHGR--IEDEMVTRVYTKQLLEGLAYLHEHG--IVHRDIKPANILLDF 1369 (1509)
T ss_pred             cCcHHHHHHhcc--hhhhhHHHHHHHHHHHHHHHHHhcC--ceecCCCccceeeec
Confidence            999999999876  6788889999999999999999999  999999999999985

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=99.87  E-value=1.9e-21  Score=155.26  Aligned_cols=128  Identities=11%  Similarity=0.154  Sum_probs=108.2

Q ss_pred             cccccccCCCCCCceeecc--CCCceeeeeeeeccCCch------------HHHHHHHHHhHhhhcCCCceeeeeeeeeC
Q psy12580        105 SLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPR------------VSRDFNEEFPKLRIFSHPNVLPVIGCVNS  170 (239)
Q Consensus       105 ~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~------------~~~~~~~e~~~l~~l~h~~iv~l~~~~~~  170 (239)
                      .+.+.||+|+||.||+|..  .+..+++|.+........            ....+.+|+.+++.++||||+++++++..
T Consensus        12 ~~~~~ig~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~   91 (335)
T PTZ00024         12 QKGAHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKHENIMGLVDVYVE   91 (335)
T ss_pred             hhhhcccCCCceeEEEEEECCCCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCCCcceeeeeEEEec
Confidence            4567799999999999986  456778887754322210            11246789999999999999999999999


Q ss_pred             CCceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        171 PPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       171 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .+..++||||+. |+|.+++....  .+++..+..++.|++.||.|||+.+  |+|+||||+||+++
T Consensus        92 ~~~~~lv~e~~~-~~l~~~l~~~~--~~~~~~~~~~~~ql~~aL~~LH~~~--i~H~dl~~~nill~  153 (335)
T PTZ00024         92 GDFINLVMDIMA-SDLKKVVDRKI--RLTESQVKCILLQILNGLNVLHKWY--FMHRDLSPANIFIN  153 (335)
T ss_pred             CCcEEEEEeccc-cCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCC--eecccccHHHeEEC
Confidence            999999999997 59999998755  6899999999999999999999999  99999999999986

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.86  E-value=9.9e-22  Score=176.59  Aligned_cols=124  Identities=21%  Similarity=0.390  Sum_probs=103.2

Q ss_pred             CCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEee
Q psy12580        103 DLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQY  180 (239)
Q Consensus       103 ~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~  180 (239)
                      .+...+.+|+|+||.||+|..  .+..+++|.+......      ...|+..+++++||||+++++++...+..++||||
T Consensus       691 ~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~------~~~~~~~l~~l~HpnIv~~~~~~~~~~~~~lv~Ey  764 (968)
T PLN00113        691 SLKEENVISRGKKGASYKGKSIKNGMQFVVKEINDVNSI------PSSEIADMGKLQHPNIVKLIGLCRSEKGAYLIHEY  764 (968)
T ss_pred             hCCcccEEccCCCeeEEEEEECCCCcEEEEEEccCCccc------cHHHHHHHhhCCCCCcceEEEEEEcCCCCEEEEeC
Confidence            345567899999999999986  4567777876432211      12457789999999999999999999999999999


Q ss_pred             CCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcC-CCCcccCCCCCccceee
Q psy12580        181 MAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSL-ERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       181 ~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~-~~~ivHrdikp~Nill~  237 (239)
                      +++|+|.++++.     +++..+.+++.|+++||+|||.. .+.|+||||||+||+++
T Consensus       765 ~~~g~L~~~l~~-----l~~~~~~~i~~~ia~~L~yLH~~~~~~iiH~dlkp~Nil~~  817 (968)
T PLN00113        765 IEGKNLSEVLRN-----LSWERRRKIAIGIAKALRFLHCRCSPAVVVGNLSPEKIIID  817 (968)
T ss_pred             CCCCcHHHHHhc-----CCHHHHHHHHHHHHHHHHHhccCCCCCeecCCCCHHhEEEC
Confidence            999999999963     78899999999999999999943 22399999999999987

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=99.86  E-value=1.9e-21  Score=150.72  Aligned_cols=132  Identities=19%  Similarity=0.336  Sum_probs=111.4

Q ss_pred             CCCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhc-CCCceeeeeeeeeCCC-----
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIF-SHPNVLPVIGCVNSPP-----  172 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~l~~~~~~~~-----  172 (239)
                      .+.|++.+.+|+|++|.||+|...  +..+++|.+....   ...+.+.+|+.+++++ .|+||+++++++....     
T Consensus         5 ~~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~---~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~   81 (275)
T cd06608           5 TGIFELVEVIGEGTYGKVYKARHKKTGQLVAIKIMDIIE---DEEEEIKEEYNILRKYSNHPNIATFYGAFIKKNPPGND   81 (275)
T ss_pred             hhheeheeeecCCCCeEEEEEEECCCCcEEEEEEEecCc---hhHHHHHHHHHHHHHhcCCCChheEEEEEEecCCCCcc
Confidence            367888999999999999999874  3556777765432   2336688999999998 7999999999986544     


Q ss_pred             -ceEEEEeeCCCCCHHHHhhcCC--CcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        173 -DLVVISQYMAWGSLYALLHEGA--GIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       173 -~~~lv~e~~~~gsL~~~l~~~~--~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                       ..++||||+++++|.+++....  +..+++..+..++.|++.||.|||+.+  ++|+||+|+||+++
T Consensus        82 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~~~--i~H~~l~p~ni~~~  147 (275)
T cd06608          82 DQLWLVMELCGGGSVTDLVKGLRKKGKRLKEEWIAYILRETLRGLAYLHENK--VIHRDIKGQNILLT  147 (275)
T ss_pred             eEEEEEEEcCCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhcCC--cccCCCCHHHEEEc
Confidence             4899999999999999987532  346899999999999999999999999  99999999999986

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=99.86  E-value=1.6e-21  Score=156.68  Aligned_cols=129  Identities=16%  Similarity=0.218  Sum_probs=108.7

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCC------c
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP------D  173 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~------~  173 (239)
                      ..|...+.||+|+||.||++..  .+..+++|.+............+.+|+.+++.++||||+++++++....      .
T Consensus        16 ~~y~~~~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~   95 (353)
T cd07850          16 KRYQNLKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQNVTHAKRAYRELVLMKLVNHKNIIGLLNVFTPQKSLEEFQD   95 (353)
T ss_pred             cceEEEEEeccCCCEEEEEEEECCCCCEEEEEecCccccChhHHHHHHHHHHHHHhcCCCCCcceeeeeccCCCccccCc
Confidence            5678889999999999999986  4567788887544333444466778999999999999999999886442      5


Q ss_pred             eEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        174 LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .++||||+.+ +|.+.+..    .++...+..++.|++.||+|||+.|  |+||||||+||+++
T Consensus        96 ~~lv~e~~~~-~l~~~~~~----~l~~~~~~~~~~ql~~aL~~LH~~g--i~H~dlkp~Nil~~  152 (353)
T cd07850          96 VYLVMELMDA-NLCQVIQM----DLDHERMSYLLYQMLCGIKHLHSAG--IIHRDLKPSNIVVK  152 (353)
T ss_pred             EEEEEeccCC-CHHHHHhh----cCCHHHHHHHHHHHHHHHHHHHhCC--eeeCCCCHHHEEEC
Confidence            7999999965 88888865    3788999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.86  E-value=1.4e-21  Score=155.02  Aligned_cols=122  Identities=11%  Similarity=0.058  Sum_probs=93.7

Q ss_pred             CCCCcccccccCCCCCCceeeccC---CCceeeeeeeeccC---CchHHHHHHHHHhHhhhcCCCceee-eeeeeeCCCc
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRWQ---KNDIVAKILAVRNC---TPRVSRDFNEEFPKLRIFSHPNVLP-VIGCVNSPPD  173 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~~---~~~~~vk~~~~~~~---~~~~~~~~~~e~~~l~~l~h~~iv~-l~~~~~~~~~  173 (239)
                      ...|.+.+.||+|+||.||+|.+.   +..+++|.+.....   .......+.+|+.+|..++|+|++. +++.    +.
T Consensus        17 ~~~Y~~~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L~h~~iv~~l~~~----~~   92 (365)
T PRK09188         17 SARFVETAVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTVRGIGVVPQLLAT----GK   92 (365)
T ss_pred             cCCceEccEEeecCcEEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHHHHHHhccCCCCCcEEEEc----CC
Confidence            467889999999999999999863   33446676543211   2223456899999999999999885 4432    45


Q ss_pred             eEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCC-CCccceee
Q psy12580        174 LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQL-NSRHVMVY  237 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdi-kp~Nill~  237 (239)
                      .++||||+++++|.. +...     .   ...++.|+++||.|||+.|  |+|||| ||+|||++
T Consensus        93 ~~LVmE~~~G~~L~~-~~~~-----~---~~~~~~~i~~aL~~lH~~g--IiHrDL~KP~NILv~  146 (365)
T PRK09188         93 DGLVRGWTEGVPLHL-ARPH-----G---DPAWFRSAHRALRDLHRAG--ITHNDLAKPQNWLMG  146 (365)
T ss_pred             cEEEEEccCCCCHHH-hCcc-----c---hHHHHHHHHHHHHHHHHCC--CeeCCCCCcceEEEc
Confidence            799999999999963 2111     1   1467899999999999999  999999 99999985

>KOG1151|consensus

Probab=99.86  E-value=3.3e-22  Score=156.58  Aligned_cols=133  Identities=11%  Similarity=0.238  Sum_probs=112.1

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCch-----HHHHHHHHHhHhhhcCCCceeeeeeeee-CCCc
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPR-----VSRDFNEEFPKLRIFSHPNVLPVIGCVN-SPPD  173 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~-----~~~~~~~e~~~l~~l~h~~iv~l~~~~~-~~~~  173 (239)
                      +.|-+...+|+|+|+.||+|..  ..+-+++|+-........     ..+...+|.++.+.+.||.||++|+++. +.+.
T Consensus       463 ~RYLlLhLLGrGGFSEVyKAFDl~EqRYvAvKIHqlNK~WrdEKKeNYhKHAcREyrIHKeLDHpRIVKlYDyfslDtds  542 (775)
T KOG1151|consen  463 DRYLLLHLLGRGGFSEVYKAFDLTEQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHKELDHPRIVKLYDYFSLDTDS  542 (775)
T ss_pred             HHHHHHHHhccccHHHHHHhcccchhheeeEeeehhccchhhHhhhhHHHHHHHHHhhhhccCcceeeeeeeeeeecccc
Confidence            3455667899999999999986  445566677654432221     2345678999999999999999999885 4558


Q ss_pred             eEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCcccee
Q psy12580        174 LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV  236 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill  236 (239)
                      +|-|+|||+|.+|.-||+...  .+++..++.|..||+.||.||.+..+||||-||||.||||
T Consensus       543 FCTVLEYceGNDLDFYLKQhk--lmSEKEARSIiMQiVnAL~YLNEikpPIIHYDLKPgNILL  603 (775)
T KOG1151|consen  543 FCTVLEYCEGNDLDFYLKQHK--LMSEKEARSIIMQIVNALKYLNEIKPPIIHYDLKPGNILL  603 (775)
T ss_pred             ceeeeeecCCCchhHHHHhhh--hhhHHHHHHHHHHHHHHHHHHhccCCCeeeeccCCccEEE
Confidence            999999999999999999877  7999999999999999999999999999999999999997

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=99.86  E-value=3e-21  Score=152.25  Aligned_cols=132  Identities=17%  Similarity=0.243  Sum_probs=111.6

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeecc-CCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEE
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRN-CTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVIS  178 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~  178 (239)
                      ..|...+.+|+|+||.||+|..  .+..+++|.+.... ......+.+.+|+.+++.++||||+++++++...+..++|+
T Consensus        15 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~Ei~~l~~l~h~niv~~~~~~~~~~~~~lv~   94 (307)
T cd06607          15 KLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPNTIEYKGCYLREHTAWLVM   94 (307)
T ss_pred             hhhhhheeecCCCCeEEEEEEEcCCCcEEEEEEEeccccCcHHHHHHHHHHHHHHHhCCCCCEEEEEEEEEeCCeEEEEH
Confidence            4477788999999999999986  45677778775432 22334467889999999999999999999999999999999


Q ss_pred             eeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        179 QYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       179 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||+. |++.+++.... ..+++..+..++.|++.||.|||+.+  |+||||+|+||+++
T Consensus        95 e~~~-g~l~~~~~~~~-~~l~~~~~~~~~~ql~~~L~~LH~~~--i~H~dl~p~nIl~~  149 (307)
T cd06607          95 EYCL-GSASDILEVHK-KPLQEVEIAAICHGALQGLAYLHSHE--RIHRDIKAGNILLT  149 (307)
T ss_pred             HhhC-CCHHHHHHHcc-cCCCHHHHHHHHHHHHHHHHHHHHCC--ceecCCCcccEEEC
Confidence            9997 58888776533 25899999999999999999999999  99999999999986

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=99.86  E-value=2.7e-21  Score=151.44  Aligned_cols=132  Identities=19%  Similarity=0.269  Sum_probs=109.4

Q ss_pred             CCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhc-CCCceeeeeeeeeCC-----C
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIF-SHPNVLPVIGCVNSP-----P  172 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~l~~~~~~~-----~  172 (239)
                      ..+|.+.+.+|+|+||.||++..  .+..+++|.+....   .....+..|+.++.++ +|||++++++++...     +
T Consensus        21 ~~~y~~~~~l~~g~~~~vy~~~~~~~~~~~aik~~~~~~---~~~~~~~~e~~~l~~l~~h~ni~~~~~~~~~~~~~~~~   97 (291)
T cd06639          21 TDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPIS---DVDEEIEAEYNILQSLPNHPNVVKFYGMFYKADKLVGG   97 (291)
T ss_pred             CCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEecccc---cHHHHHHHHHHHHHHhcCCCCeEEEEEEEEeccccCCC
Confidence            46788999999999999999987  34566777775322   2235567888999988 799999999988653     3


Q ss_pred             ceEEEEeeCCCCCHHHHhhcC--CCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        173 DLVVISQYMAWGSLYALLHEG--AGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       173 ~~~lv~e~~~~gsL~~~l~~~--~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ..++|+||+++|+|.++++..  .+..+++..++.++.|++.||.|||+.+  ++||||||+||+++
T Consensus        98 ~~~lv~ey~~~~sL~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~--ivH~dlkp~nili~  162 (291)
T cd06639          98 QLWLVLELCNGGSVTELVKGLLICGQRLDEAMISYILYGALLGLQHLHNNR--IIHRDVKGNNILLT  162 (291)
T ss_pred             eeEEEEEECCCCcHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHhCC--eeccCCCHHHEEEc
Confidence            589999999999999988641  2236899999999999999999999999  99999999999986

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=99.86  E-value=1.1e-21  Score=151.03  Aligned_cols=132  Identities=17%  Similarity=0.289  Sum_probs=108.3

Q ss_pred             CcccccccCCCCCCceeeccCC--Cceeeeeeee---ccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEE
Q psy12580        104 LSLHTKISSGPNGDTWRGRWQK--NDIVAKILAV---RNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVIS  178 (239)
Q Consensus       104 ~~~~~~ig~g~~g~v~~~~~~~--~~~~vk~~~~---~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~  178 (239)
                      |.+.+.||+|+||.||++....  ....+|++..   ..........+..|..+++.++||||+++++++......++|+
T Consensus         2 y~i~~~ig~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   81 (260)
T cd08222           2 YILQQRLGKGSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLDHPAIVKFHASFLERDAFCIIT   81 (260)
T ss_pred             ceeeeeecCCCCceEEEEEecCCCCcceEEEeccccccccCcchHHHHHHHHHHHHhCCCCcHHHHHHHHhcCCceEEEE
Confidence            5677899999999999998743  3344444432   2223333455678899999999999999999999888999999


Q ss_pred             eeCCCCCHHHHhhc--CCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        179 QYMAWGSLYALLHE--GAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       179 e~~~~gsL~~~l~~--~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||+++++|.+++..  ..+..+++..++.++.|++.||.|||+.+  ++|+||||+||+++
T Consensus        82 e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~--i~h~~l~~~nili~  140 (260)
T cd08222          82 EYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHYMHQRR--ILHRDLKAKNIFLK  140 (260)
T ss_pred             EeCCCCCHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHHcC--ccccCCChhheEee
Confidence            99999999998864  22236899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>KOG1152|consensus

Probab=99.86  E-value=3.2e-22  Score=160.69  Aligned_cols=134  Identities=16%  Similarity=0.198  Sum_probs=113.4

Q ss_pred             CCCCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCC--chH----HHHHHHHHhHhhhcC---CCceeeeeeee
Q psy12580        100 SLNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCT--PRV----SRDFNEEFPKLRIFS---HPNVLPVIGCV  168 (239)
Q Consensus       100 ~~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~--~~~----~~~~~~e~~~l~~l~---h~~iv~l~~~~  168 (239)
                      +..+|...+.+|+|+||.|+.|.++  ...|++|.+.+...-  ...    .-..-.|+.+|..++   |+||++++++|
T Consensus       559 k~s~yttlq~lG~GAyGkV~lai~K~n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~sH~NIlKlLdfF  638 (772)
T KOG1152|consen  559 KFSDYTTLQPLGEGAYGKVNLAIHKENNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLNKHSHENILKLLDFF  638 (772)
T ss_pred             ccccceeeeeccccccceEEEeeecccceEEEeeehhhhhhhhhhhhcccccCccchhHHHHHHhhhcCccchhhhhhee
Confidence            4467889999999999999999984  356677887664321  111    122456899999996   99999999999


Q ss_pred             eCCCceEEEEee-CCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        169 NSPPDLVVISQY-MAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       169 ~~~~~~~lv~e~-~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ++++.+||+||- -++-+|+++|...+  .+++..+..|++||+.|+++||++|  |||||||-+|+.+|
T Consensus       639 Eddd~yyl~te~hg~gIDLFd~IE~kp--~m~E~eAk~IFkQV~agi~hlh~~~--ivhrdikdenvivd  704 (772)
T KOG1152|consen  639 EDDDYYYLETEVHGEGIDLFDFIEFKP--RMDEPEAKLIFKQVVAGIKHLHDQG--IVHRDIKDENVIVD  704 (772)
T ss_pred             ecCCeeEEEecCCCCCcchhhhhhccC--ccchHHHHHHHHHHHhccccccccC--ceecccccccEEEe
Confidence            999999999996 45669999999888  7999999999999999999999999  99999999999987

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=99.86  E-value=4.1e-21  Score=146.83  Aligned_cols=130  Identities=18%  Similarity=0.353  Sum_probs=113.8

Q ss_pred             CCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEee
Q psy12580        103 DLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQY  180 (239)
Q Consensus       103 ~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~  180 (239)
                      +|...+.+|+|++|.||++...  +..+++|.......  .....+.+|+..++.++|++++++++.+......++++||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~--~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~l~~e~   78 (253)
T cd05122           1 LFEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESK--EKKEKIINEIQILKKCKHPNIVKYYGSYLKKDELWIVMEF   78 (253)
T ss_pred             CceeeeeeccCCceEEEEEEECCCCcEEEEEEecccch--hHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEec
Confidence            4667788999999999999884  56677777755432  3456788999999999999999999999998999999999


Q ss_pred             CCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        181 MAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       181 ~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +++++|.+++.... ..+++..+..++.|++.||.|||+.+  ++|+||+|+||+++
T Consensus        79 ~~~~~L~~~~~~~~-~~~~~~~~~~i~~~i~~~l~~lh~~~--i~h~dl~p~ni~i~  132 (253)
T cd05122          79 CSGGSLKDLLKSTN-QTLTESQIAYVCKELLKGLEYLHSNG--IIHRDIKAANILLT  132 (253)
T ss_pred             CCCCcHHHHHhhcC-CCCCHHHHHHHHHHHHHHHHHhhcCC--EecCCCCHHHEEEc
Confidence            99999999998763 26899999999999999999999999  99999999999986

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=99.86  E-value=1.6e-21  Score=152.42  Aligned_cols=130  Identities=15%  Similarity=0.215  Sum_probs=110.6

Q ss_pred             CcccccccCCCCCCceeecc-----CCCceeeeeeeeccC--CchHHHHHHHHHhHhhhc-CCCceeeeeeeeeCCCceE
Q psy12580        104 LSLHTKISSGPNGDTWRGRW-----QKNDIVAKILAVRNC--TPRVSRDFNEEFPKLRIF-SHPNVLPVIGCVNSPPDLV  175 (239)
Q Consensus       104 ~~~~~~ig~g~~g~v~~~~~-----~~~~~~vk~~~~~~~--~~~~~~~~~~e~~~l~~l-~h~~iv~l~~~~~~~~~~~  175 (239)
                      |.+.+.||+|++|.||++..     .+..+++|.+.....  .....+.+..|+.++..+ +||+|+++++.+..+...+
T Consensus         2 ~~~~~~ig~G~~~~vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~~~~~~~~   81 (288)
T cd05583           2 FELLRVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPFLVTLHYAFQTDTKLH   81 (288)
T ss_pred             ceEEEEeccCCCceEEEEEEeccccCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhccCCcchhhhheeeecCCEEE
Confidence            56778999999999999874     335677887754321  122345678899999999 5999999999999888999


Q ss_pred             EEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        176 VISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       176 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +||||+.+|+|.+++....  .+++..+..++.|+++||.|||+.+  ++||||||+||+++
T Consensus        82 lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~ql~~~l~~lH~~~--~~H~dl~p~nil~~  139 (288)
T cd05583          82 LILDYVNGGELFTHLYQRE--HFTESEVRVYIAEIVLALDHLHQLG--IIYRDIKLENILLD  139 (288)
T ss_pred             EEEecCCCCcHHHHHhhcC--CcCHHHHHHHHHHHHHHHHHHHHCC--eeccCCCHHHeEEC
Confidence            9999999999999998654  6899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=99.86  E-value=3.2e-21  Score=153.41  Aligned_cols=131  Identities=17%  Similarity=0.245  Sum_probs=110.1

Q ss_pred             CCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeC-CCceEEE
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNS-PPDLVVI  177 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~-~~~~~lv  177 (239)
                      ...|...+.||+|+||.||++..  .+..+++|.+..........+.+..|+.++..++||||+++++++.. ....+++
T Consensus         9 ~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~lv   88 (328)
T cd07856           9 TNRYVDLQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFSTPVLAKRTYRELKLLKHLRHENIISLSDIFISPLEDIYFV   88 (328)
T ss_pred             ccceEEEEeecccCCeEEEEEEECCCCCEEEEEEecccccccchhHHHHHHHHHHHhcCCCCeeeEeeeEecCCCcEEEE
Confidence            35688889999999999999975  45667778775543334445677889999999999999999998865 4578999


Q ss_pred             EeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        178 SQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       178 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +||+ +++|.++++..   .+++..+..++.|+++||.|||+.+  |+||||||+||+++
T Consensus        89 ~e~~-~~~L~~~~~~~---~~~~~~~~~~~~ql~~aL~~LH~~~--iiH~dl~p~Nili~  142 (328)
T cd07856          89 TELL-GTDLHRLLTSR---PLEKQFIQYFLYQILRGLKYVHSAG--VVHRDLKPSNILIN  142 (328)
T ss_pred             eehh-ccCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhCC--cccCCCCHHHEeEC
Confidence            9999 55999888754   3788889999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=99.86  E-value=4e-21  Score=148.68  Aligned_cols=133  Identities=16%  Similarity=0.220  Sum_probs=108.8

Q ss_pred             CCcccccccCCCCCCceeeccCC---Cceeeeeeeecc--------CCchHHHHHHHHHhHhhh-cCCCceeeeeeeeeC
Q psy12580        103 DLSLHTKISSGPNGDTWRGRWQK---NDIVAKILAVRN--------CTPRVSRDFNEEFPKLRI-FSHPNVLPVIGCVNS  170 (239)
Q Consensus       103 ~~~~~~~ig~g~~g~v~~~~~~~---~~~~vk~~~~~~--------~~~~~~~~~~~e~~~l~~-l~h~~iv~l~~~~~~  170 (239)
                      +|.+.+.||+|+||.||++...+   ..+++|.+....        ........+..|+.++.+ ++||||+++++++..
T Consensus         1 ~y~~~~~ig~G~~~~v~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~   80 (269)
T cd08528           1 EYAVLEHLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPNIVRYYKTFLE   80 (269)
T ss_pred             CchhhhhhcCCCCceEEEEEEcCCCCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcCCCCCeeeEEeeEcc
Confidence            36678899999999999998743   556777764321        122334567788888875 699999999999999


Q ss_pred             CCceEEEEeeCCCCCHHHHhhc--CCCcccCHHHHHHHHHHHHHHhhhhhc-CCCCcccCCCCCccceee
Q psy12580        171 PPDLVVISQYMAWGSLYALLHE--GAGIVVDFAQALRFAVDVARGMAFLHS-LERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       171 ~~~~~lv~e~~~~gsL~~~l~~--~~~~~~~~~~~~~~~~~i~~~l~~lH~-~~~~ivHrdikp~Nill~  237 (239)
                      .+..+++|||+++++|.+++..  .....+++..++.++.|++.||.|||+ .+  ++|+||||+||+++
T Consensus        81 ~~~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~~--i~H~dl~~~nil~~  148 (269)
T cd08528          81 NDRLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVLALRYLHKEKR--IVHRDLTPNNIMLG  148 (269)
T ss_pred             CCeEEEEEecCCCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhccCCc--eeecCCCHHHEEEC
Confidence            9999999999999999998854  122368999999999999999999996 67  99999999999986

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=99.86  E-value=2.6e-21  Score=150.98  Aligned_cols=130  Identities=18%  Similarity=0.300  Sum_probs=111.6

Q ss_pred             CcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCC--CceEEEEe
Q psy12580        104 LSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSP--PDLVVISQ  179 (239)
Q Consensus       104 ~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~--~~~~lv~e  179 (239)
                      |.+.+.+|+|++|.||+|...  +..+++|.+............+.+|+.+++.++|||++++++++...  +..++|+|
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e   80 (287)
T cd07840           1 YEKIAQIGEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKLRHPNIVRLKEIVTSKGKGSIYMVFE   80 (287)
T ss_pred             CeeeEEeccCCCeEEEEEEECCCCeEEEEEEEecccccccchHHHHHHHHHHHhccCCCeeeheeeEecCCCCcEEEEec
Confidence            456778999999999999874  46677788876543334446688899999999999999999999887  78999999


Q ss_pred             eCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       180 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |+++ +|.+++.... ..+++..++.++.|++.||+|||+.+  ++|+||||+||+++
T Consensus        81 ~~~~-~l~~~~~~~~-~~~~~~~~~~i~~~i~~al~~LH~~~--~~h~dl~p~nil~~  134 (287)
T cd07840          81 YMDH-DLTGLLDSPE-VKFTESQIKCYMKQLLEGLQYLHSNG--ILHRDIKGSNILIN  134 (287)
T ss_pred             cccc-cHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHHHCC--ceeccCcHHHeEEc
Confidence            9975 9999987653 26899999999999999999999999  99999999999987

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=99.86  E-value=4.5e-21  Score=149.73  Aligned_cols=128  Identities=17%  Similarity=0.283  Sum_probs=109.9

Q ss_pred             CCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEee
Q psy12580        103 DLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQY  180 (239)
Q Consensus       103 ~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~  180 (239)
                      .+...+.||+|++|.||++..  .+..+++|.+....  ....+.+.+|+.+++.+.||||+++++++..++..++++||
T Consensus        20 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~--~~~~~~~~~e~~~l~~~~h~~vv~~~~~~~~~~~~~~v~e~   97 (285)
T cd06648          20 YLDNFVKIGEGSTGIVCIATDKSTGRQVAVKKMDLRK--QQRRELLFNEVVIMRDYQHPNIVEMYSSYLVGDELWVVMEF   97 (285)
T ss_pred             hhhcceEeccCCCeEEEEEEECCCCCEEEEEEEeccc--hhHHHHHHHHHHHHHHcCCCChheEEEEEEcCCeEEEEEec
Confidence            344557899999999999976  34667778764332  23345678899999999999999999999999999999999


Q ss_pred             CCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        181 MAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       181 ~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +.+++|.+++...   .+++..+..++.|++.||.|||+.+  ++||||+|+||+++
T Consensus        98 ~~~~~L~~~~~~~---~~~~~~~~~~~~ql~~~l~~lH~~~--i~H~dl~p~Nil~~  149 (285)
T cd06648          98 LEGGALTDIVTHT---RMNEEQIATVCLAVLKALSFLHAQG--VIHRDIKSDSILLT  149 (285)
T ss_pred             cCCCCHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCChhhEEEc
Confidence            9999999999873   4899999999999999999999999  99999999999986

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=99.86  E-value=2e-21  Score=155.27  Aligned_cols=130  Identities=15%  Similarity=0.302  Sum_probs=108.8

Q ss_pred             CCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhc-CCCceeeeeeeeeCCC--ceEE
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIF-SHPNVLPVIGCVNSPP--DLVV  176 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~l~~~~~~~~--~~~l  176 (239)
                      .+|.+.+.||+|+||.||+|...  +..+++|.+............+..|+.++.++ +||||+++++++...+  ..++
T Consensus         7 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~ni~~~~~~~~~~~~~~~~l   86 (337)
T cd07852           7 RKYEILQKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFRNATDAQRTFREIMFLQELGDHPNIVKLLNVIKAENDKDIYL   86 (337)
T ss_pred             hHHHHhHhhcCCCCeeEEEEEEcCCCeEEEEEeeccccCcchhhhhhhHHHHHHHHhcCCCCccceeeeeccCCCceEEE
Confidence            56788899999999999999873  46677787754332333345677899999999 9999999999886543  6899


Q ss_pred             EEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        177 ISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       177 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||||+. ++|.+++...   .+++..+..++.|++.||.|||+.+  |+||||||+||+++
T Consensus        87 v~e~~~-~~L~~~~~~~---~~~~~~~~~i~~qi~~~L~~LH~~~--i~H~dl~p~nill~  141 (337)
T cd07852          87 VFEYME-TDLHAVIRAN---ILEDVHKRYIMYQLLKALKYIHSGN--VIHRDLKPSNILLN  141 (337)
T ss_pred             Eecccc-cCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCCHHHEEEc
Confidence            999997 5999998765   4788999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=99.86  E-value=1.8e-21  Score=155.44  Aligned_cols=131  Identities=16%  Similarity=0.261  Sum_probs=110.4

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCC-----ce
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP-----DL  174 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~-----~~  174 (239)
                      ..|.+.+.+|+|+||.||++..  .+..+++|.+............+..|+.+++.++|+||+++++++....     ..
T Consensus         5 ~~y~~~~~lg~G~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni~~~~~~~~~~~~~~~~~~   84 (337)
T cd07858           5 TKYVPIKPIGRGAYGIVCSAKNSETNEKVAIKKIANAFDNRIDAKRTLREIKLLRHLDHENVIAIKDIMPPPHREAFNDV   84 (337)
T ss_pred             cceeEEEEeccCCCeEEEEEEecCCCCeEEEEEecccccccchhHHHHHHHHHHHhcCCCCccchHHheecccccccCcE
Confidence            3577888999999999999986  4577888887654333334456778999999999999999999876442     58


Q ss_pred             EEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        175 VVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       175 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ++|+||+. ++|.+++....  .+++..+..++.|++.||.|||+.+  ++||||||+||+++
T Consensus        85 ~lv~e~~~-~~L~~~~~~~~--~l~~~~~~~i~~qi~~aL~~LH~~~--i~H~dlkp~Nil~~  142 (337)
T cd07858          85 YIVYELMD-TDLHQIIRSSQ--TLSDDHCQYFLYQLLRGLKYIHSAN--VLHRDLKPSNLLLN  142 (337)
T ss_pred             EEEEeCCC-CCHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHhCC--EecCCCCHHHEEEc
Confidence            99999996 69999998765  6999999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=99.86  E-value=4.1e-21  Score=149.59  Aligned_cols=129  Identities=16%  Similarity=0.230  Sum_probs=105.9

Q ss_pred             CcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcC-CCceeeeeeeeeCC--CceEEEE
Q psy12580        104 LSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFS-HPNVLPVIGCVNSP--PDLVVIS  178 (239)
Q Consensus       104 ~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~-h~~iv~l~~~~~~~--~~~~lv~  178 (239)
                      |.+.+.+|+|+||.||++..  .+..+++|.+........ ......|+..+.++. |+|++++++++..+  +..++|+
T Consensus         1 y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~-~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~lv~   79 (282)
T cd07831           1 YKILGKIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSLE-QVNNLREIQALRRLSPHPNILRLIEVLFDRKTGRLALVF   79 (282)
T ss_pred             CceEeeccccccceEEEEEEcCCCcEEEEEEehhccCCch-hhhHHHHHHHHhhcCCCCCccceEEEEecCCCCcEEEEE
Confidence            45677899999999999986  456677787754322222 233457888888884 99999999999877  7899999


Q ss_pred             eeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        179 QYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       179 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||++ |+|.+.+.... ..+++..+..++.|++.||.|||+.+  ++||||||+||+++
T Consensus        80 e~~~-~~l~~~l~~~~-~~~~~~~~~~~~~qi~~~L~~LH~~~--i~H~dl~p~ni~l~  134 (282)
T cd07831          80 ELMD-MNLYELIKGRK-RPLPEKRVKSYMYQLLKSLDHMHRNG--IFHRDIKPENILIK  134 (282)
T ss_pred             ecCC-ccHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHCC--ceecccCHHHEEEc
Confidence            9997 48888887643 25899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>KOG0604|consensus

Probab=99.86  E-value=3.5e-22  Score=148.92  Aligned_cols=127  Identities=17%  Similarity=0.306  Sum_probs=105.1

Q ss_pred             CCCccc-ccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhc-CCCceeeeeeeeeC----CCc
Q psy12580        102 NDLSLH-TKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIF-SHPNVLPVIGCVNS----PPD  173 (239)
Q Consensus       102 ~~~~~~-~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~l~~~~~~----~~~  173 (239)
                      ++|.+. ++||-|-.|.|..+..  .+...++|++...       ....+|+++.-.. .|||||+++++|..    ...
T Consensus        61 edY~is~qvLG~GinGkV~~C~~k~T~ekfALKvL~Ds-------~KARrEVeLHw~~s~h~~iV~IidVyeNs~~~rkc  133 (400)
T KOG0604|consen   61 EDYSISWQVLGAGINGKVVQCVHKRTQEKFALKVLLDS-------PKARREVELHWMASGHPHIVSIIDVYENSYQGRKC  133 (400)
T ss_pred             hhheehhhhhccccCCceEEEEeccchhhhHHHHHhcC-------HHHHhHhhhhhhhcCCCceEEeehhhhhhccCcee
Confidence            455444 6799999999988876  3466777887532       2344677765544 79999999998854    346


Q ss_pred             eEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        174 LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +.+|||.++||.|++.++.++...|++.++..|++||+.|+.|||+.+  |.||||||+|+|.+
T Consensus       134 LLiVmE~meGGeLfsriq~~g~~afTErea~eI~~qI~~Av~~lH~~n--IAHRDlKpENLLyt  195 (400)
T KOG0604|consen  134 LLIVMECMEGGELFSRIQDRGDQAFTEREASEIMKQIGLAVRYLHSMN--IAHRDLKPENLLYT  195 (400)
T ss_pred             eEeeeecccchHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhcc--hhhccCChhheeee
Confidence            889999999999999999988778999999999999999999999999  99999999999864

>KOG1025|consensus

Probab=99.86  E-value=3.8e-22  Score=166.00  Aligned_cols=133  Identities=23%  Similarity=0.449  Sum_probs=114.5

Q ss_pred             CCCCCcccccccCCCCCCceeecc--CC----CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCc
Q psy12580        100 SLNDLSLHTKISSGPNGDTWRGRW--QK----NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPD  173 (239)
Q Consensus       100 ~~~~~~~~~~ig~g~~g~v~~~~~--~~----~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~  173 (239)
                      ........++||+|+||.||+|.|  ++    -+|++|++... ..++...++..|+.+|.++.|||+++++|++.... 
T Consensus       694 kEtelkk~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~-t~~~~s~e~LdeAl~masldHpnl~RLLgvc~~s~-  771 (1177)
T KOG1025|consen  694 KETELKKDKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEF-TSPKASIELLDEALRMASLDHPNLLRLLGVCMLST-  771 (1177)
T ss_pred             hhhhhhhhceeccccceeEEeeeEecCCceecceeEEEEeecc-CCchhhHHHHHHHHHHhcCCCchHHHHhhhcccch-
Confidence            344556678899999999999998  32    35677777543 33445678999999999999999999999998876 


Q ss_pred             eEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        174 LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +.||++|++.|+|.+|++...+ .+.....+.|+.||++||.|||.++  +|||||-.+|+|+.
T Consensus       772 ~qlvtq~mP~G~LlDyvr~hr~-~igsq~lLnw~~QIAkgM~YLe~qr--lVHrdLaaRNVLVk  832 (1177)
T KOG1025|consen  772 LQLVTQLMPLGCLLDYVREHRD-NIGSQDLLNWCYQIAKGMKYLEEQR--LVHRDLAARNVLVK  832 (1177)
T ss_pred             HHHHHHhcccchHHHHHHHhhc-cccHHHHHHHHHHHHHHHHHHHhcc--hhhhhhhhhheeec
Confidence            8899999999999999998663 6889999999999999999999999  99999999999985

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=99.86  E-value=2.1e-21  Score=151.36  Aligned_cols=130  Identities=18%  Similarity=0.284  Sum_probs=109.6

Q ss_pred             CcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcC-CCceeeeeeeeeCCCceEEEEee
Q psy12580        104 LSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFS-HPNVLPVIGCVNSPPDLVVISQY  180 (239)
Q Consensus       104 ~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~-h~~iv~l~~~~~~~~~~~lv~e~  180 (239)
                      |.+.+.||+|++|.||+|...  +..+++|.+...... .......+|+..+.++. |||++++++++..++..++||||
T Consensus         1 y~~~~~ig~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~-~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e~   79 (283)
T cd07830           1 YKVIKQLGDGTFGSVYLARNKETGELVAIKKMKKKFYS-WEECMNLREVKSLRKLNEHPNIVKLKEVFRENDELYFVFEY   79 (283)
T ss_pred             CeeheeeccCCceEEEEEEECCCCcEEEEEEehhhccc-hhHHHHHHHHHHHHhccCCCCchhHHHHhhcCCcEEEEEec
Confidence            456788999999999999984  456777776543322 22234567889999998 99999999999999999999999


Q ss_pred             CCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        181 MAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       181 ~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      + +|+|.+++....+..+++..+..++.|++.||.|||+.+  ++|+||+|+||+++
T Consensus        80 ~-~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh~~~--i~H~dl~~~ni~i~  133 (283)
T cd07830          80 M-EGNLYQLMKDRKGKPFSESVIRSIIYQILQGLAHIHKHG--FFHRDLKPENLLVS  133 (283)
T ss_pred             C-CCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCChhhEEEc
Confidence            9 779999998765446899999999999999999999999  99999999999997

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=99.86  E-value=3.9e-21  Score=150.59  Aligned_cols=126  Identities=16%  Similarity=0.236  Sum_probs=108.4

Q ss_pred             cccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEeeCC
Q psy12580        105 SLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMA  182 (239)
Q Consensus       105 ~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~~  182 (239)
                      .....||+|+||.||++..  .+..+++|.+...  .......+.+|+.+++.++|+|++++++.+..++..+++|||++
T Consensus        23 ~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~--~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~  100 (292)
T cd06657          23 DNFIKIGEGSTGIVCIATVKSSGKLVAVKKMDLR--KQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLE  100 (292)
T ss_pred             hhHHHcCCCCCeEEEEEEEcCCCeEEEEEEeccc--chhHHHHHHHHHHHHHhcCCcchhheeeEEEeCCEEEEEEecCC
Confidence            3446799999999999977  4466777776432  23344668889999999999999999999999999999999999


Q ss_pred             CCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        183 WGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       183 ~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +++|.+++...   .+++..+..++.|++.||+|||+.|  ++|+||||+||+++
T Consensus       101 ~~~L~~~~~~~---~~~~~~~~~~~~ql~~~l~~lH~~g--ivH~dl~p~Nilv~  150 (292)
T cd06657         101 GGALTDIVTHT---RMNEEQIAAVCLAVLKALSVLHAQG--VIHRDIKSDSILLT  150 (292)
T ss_pred             CCcHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCCHHHEEEC
Confidence            99999988654   4789999999999999999999999  99999999999996

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=99.86  E-value=1.5e-21  Score=155.55  Aligned_cols=129  Identities=18%  Similarity=0.277  Sum_probs=111.7

Q ss_pred             CcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCC-----ceEE
Q psy12580        104 LSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP-----DLVV  176 (239)
Q Consensus       104 ~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~-----~~~l  176 (239)
                      |.+.+.||+|++|.||+|...  +..+++|.+..........+.+..|+.+++.++||||+++++++....     ..++
T Consensus         2 y~i~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~l   81 (330)
T cd07834           2 YELLKPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFDDLIDAKRILREIKLLRHLRHENIIGLLDILRPPSPEDFNDVYI   81 (330)
T ss_pred             ceeeeeecCCCCeEEEEEEeCCCCcEEEEEeeccccccchhhhhHHHHHHHHHhcCCcchhhhhhhhcccCcccccceEE
Confidence            567789999999999999874  467777877654333444567889999999999999999999987765     7899


Q ss_pred             EEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        177 ISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       177 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +|||+++ +|.+++....  .+++..+..++.|++.||.|||+.|  |+||||||+|||++
T Consensus        82 v~e~~~~-~l~~~l~~~~--~l~~~~~~~i~~~l~~~l~~LH~~g--i~H~dlkp~nili~  137 (330)
T cd07834          82 VTELMET-DLHKVIKSPQ--PLTDDHIQYFLYQILRGLKYLHSAN--VIHRDLKPSNILVN  137 (330)
T ss_pred             Eecchhh-hHHHHHhCCC--CCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCCHHHEEEc
Confidence            9999974 8999998765  6999999999999999999999999  99999999999987

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=99.86  E-value=2.2e-21  Score=154.92  Aligned_cols=129  Identities=17%  Similarity=0.320  Sum_probs=108.2

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCC-----ce
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP-----DL  174 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~-----~~  174 (239)
                      ++|.+.+.+|+|+||.||+|..  .+..+++|.+.... .......+..|+.+++.++||||+++++++....     ..
T Consensus         5 ~~y~i~~~lg~G~~g~vy~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~   83 (336)
T cd07849           5 PRYQNLSYIGEGAYGMVCSATHKPTGVKVAIKKISPFE-HQTFCQRTLREIKILRRFKHENIIGILDIIRPPSFESFNDV   83 (336)
T ss_pred             cceEEEEEEEecCCeEEEEEEEcCCCCeEEEEEecccc-cchhHHHHHHHHHHHHhCCCCCcCchhheeecccccccceE
Confidence            5688899999999999999976  45677888775322 2233456778999999999999999998875443     58


Q ss_pred             EEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        175 VVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       175 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ++++||+.+ +|.+++...   .+++..+..++.|++.||.|||+.+  |+||||||+|||++
T Consensus        84 ~lv~e~~~~-~l~~~~~~~---~l~~~~~~~i~~ql~~aL~~LH~~~--ivH~dlkp~Nill~  140 (336)
T cd07849          84 YIVQELMET-DLYKLIKTQ---HLSNDHIQYFLYQILRGLKYIHSAN--VLHRDLKPSNLLLN  140 (336)
T ss_pred             EEEehhccc-CHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhCC--eeccCCCHHHEEEC
Confidence            999999965 898888654   4899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=99.86  E-value=4.3e-21  Score=148.47  Aligned_cols=123  Identities=19%  Similarity=0.252  Sum_probs=98.8

Q ss_pred             Cccccc--ccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhc-CCCceeeeeeeeeCCCceEEEE
Q psy12580        104 LSLHTK--ISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIF-SHPNVLPVIGCVNSPPDLVVIS  178 (239)
Q Consensus       104 ~~~~~~--ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~l~~~~~~~~~~~lv~  178 (239)
                      +.+.+.  +|+|+||.||++..  .+..+++|.........       .|......+ +||||+++++.+..++..++||
T Consensus        16 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~-------~e~~~~~~~~~h~~iv~~~~~~~~~~~~~iv~   88 (267)
T PHA03390         16 CEIVKKLKLIDGKFGKVSVLKHKPTQKLFVQKIIKAKNFNA-------IEPMVHQLMKDNPNFIKLYYSVTTLKGHVLIM   88 (267)
T ss_pred             hccccceeecCCCceEEEEEEEcCCCcEEEEEEEehhhcch-------hhHHHHHHhhcCCCEEEEEEEEecCCeeEEEE
Confidence            344444  59999999999986  34556667765432221       122222222 6999999999999999999999


Q ss_pred             eeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        179 QYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       179 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||+++|+|.+++....  .+++..+..++.|+++||.|||+.+  ++||||||+||+++
T Consensus        89 e~~~~~~L~~~l~~~~--~l~~~~~~~~~~qi~~~l~~lH~~~--i~H~dl~p~nil~~  143 (267)
T PHA03390         89 DYIKDGDLFDLLKKEG--KLSEAEVKKIIRQLVEALNDLHKHN--IIHNDIKLENVLYD  143 (267)
T ss_pred             EcCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCC--eeeCCCCHHHEEEe
Confidence            9999999999998765  6899999999999999999999999  99999999999986

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=99.86  E-value=2.7e-21  Score=151.13  Aligned_cols=133  Identities=15%  Similarity=0.152  Sum_probs=107.6

Q ss_pred             CCCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcC-CCceeeeeeeeeCCCceEEE
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFS-HPNVLPVIGCVNSPPDLVVI  177 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~-h~~iv~l~~~~~~~~~~~lv  177 (239)
                      .+++...+.||+|+||.||++...  +..+++|.+...... .....+..|+..+.++. ||||+++++++..++..+++
T Consensus         3 ~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~-~~~~~~~~e~~~l~~~~~~~~iv~~~~~~~~~~~~~~~   81 (288)
T cd06616           3 AEDLKDLGEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDE-KEQKRLLMDLDVVMRSSDCPYIVKFYGALFREGDCWIC   81 (288)
T ss_pred             HHHhHHHHHhCCCCceEEEEEEECCCCCEEEEEEehhccCh-HHHHHHHHHHHHHHHhcCCCCEeeeeeEEecCCcEEEE
Confidence            356677889999999999999873  466777877543322 34567888999999985 99999999999888899999


Q ss_pred             EeeCCCCCHHHHhh---cCCCcccCHHHHHHHHHHHHHHhhhhhc-CCCCcccCCCCCccceee
Q psy12580        178 SQYMAWGSLYALLH---EGAGIVVDFAQALRFAVDVARGMAFLHS-LERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       178 ~e~~~~gsL~~~l~---~~~~~~~~~~~~~~~~~~i~~~l~~lH~-~~~~ivHrdikp~Nill~  237 (239)
                      |||+.. ++.++..   ......+++..+..++.|++.||+|||+ .+  ++||||||+||+++
T Consensus        82 ~e~~~~-~l~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~--i~H~dlkp~Nil~~  142 (288)
T cd06616          82 MELMDI-SLDKFYKYVYEVLKSVIPEEILGKIAVATVKALNYLKEELK--IIHRDVKPSNILLD  142 (288)
T ss_pred             EecccC-CHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhcCC--eeccCCCHHHEEEc
Confidence            999864 6655432   2222368999999999999999999997 58  99999999999986

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=99.86  E-value=4.7e-21  Score=152.82  Aligned_cols=129  Identities=17%  Similarity=0.247  Sum_probs=106.3

Q ss_pred             CcccccccCCCCCCceeeccC----CCceeeeeeeeccCCchHHHHHHHHHhHhhhc-CCCceeeeeeeeeCC----Cce
Q psy12580        104 LSLHTKISSGPNGDTWRGRWQ----KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIF-SHPNVLPVIGCVNSP----PDL  174 (239)
Q Consensus       104 ~~~~~~ig~g~~g~v~~~~~~----~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~l~~~~~~~----~~~  174 (239)
                      |.+.+.||+|+||.||++...    +..+++|.+..........+.+.+|+.++..+ .||||+++++.+...    ...
T Consensus         2 y~~~~~lg~G~~g~vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~   81 (332)
T cd07857           2 YELIKELGQGAYGIVCSARNAETSEEETVAIKKITNVFSKKILAKRALRELKLLRHFRGHKNITCLYDMDIVFPGNFNEL   81 (332)
T ss_pred             ceEEEEccccCCeEEEEEEeCCCCcCceEEEEEeccccccchhHHHHHHHHHHHHHhcCCCChheeeeeeeeccccCCcE
Confidence            567788999999999999874    44677787754333333446678899999998 599999999865332    367


Q ss_pred             EEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        175 VVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       175 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ++++||+. ++|.+++....  .+++..++.++.|++.||.|||+.|  |+||||||+|||++
T Consensus        82 ~~~~e~~~-~~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~g--ivH~dlkp~Nili~  139 (332)
T cd07857          82 YLYEELME-ADLHQIIRSGQ--PLTDAHFQSFIYQILCGLKYIHSAN--VLHRDLKPGNLLVN  139 (332)
T ss_pred             EEEEeccc-CCHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHhCC--cccCCCCHHHeEEc
Confidence            89999996 59999997655  6899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=99.86  E-value=3.6e-21  Score=154.19  Aligned_cols=131  Identities=15%  Similarity=0.199  Sum_probs=108.5

Q ss_pred             CCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCC------C
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSP------P  172 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~------~  172 (239)
                      .+.|...+.||+|+||.||++..  .+..+++|.+..........+.+.+|+.+++.++||||+++++++...      .
T Consensus        16 ~~~y~~~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~iv~~~~~~~~~~~~~~~~   95 (345)
T cd07877          16 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFN   95 (345)
T ss_pred             cCceEEEEEeeecCCeEEEEEEEcCCCeEEEEEEecCcchhhHHHHHHHHHHHHHHHcCCCcccceeeeeeecccccccc
Confidence            46788889999999999999975  456677787754333333345678899999999999999999987543      3


Q ss_pred             ceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        173 DLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       173 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ..+++++++ +++|.++++..   .+++..+..++.|++.||+|||+.+  |+||||||+||+++
T Consensus        96 ~~~lv~~~~-~~~L~~~~~~~---~l~~~~~~~i~~qi~~aL~~LH~~~--ivH~dlkp~NIll~  154 (345)
T cd07877          96 DVYLVTHLM-GADLNNIVKCQ---KLTDDHVQFLIYQILRGLKYIHSAD--IIHRDLKPSNLAVN  154 (345)
T ss_pred             cEEEEehhc-ccCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHCC--eeecCCChHHEEEc
Confidence            478888887 67999888754   4899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=99.85  E-value=2.9e-21  Score=150.42  Aligned_cols=130  Identities=17%  Similarity=0.283  Sum_probs=112.1

Q ss_pred             CcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEeeC
Q psy12580        104 LSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYM  181 (239)
Q Consensus       104 ~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~  181 (239)
                      |...+.||+|.+|.||+|...  +..+++|............+.+..|+.+++.++|+|++++++++...+..++|+||+
T Consensus         1 y~~~~~ig~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~~   80 (282)
T cd07829           1 YEKLEKLGEGTYGVVYKARDKKTGEIVALKKIRLDNEEEGIPSTALREISLLKELKHPNIVKLLDVIHTERKLYLVFEYC   80 (282)
T ss_pred             CeeehcccccCcceEEEeeecCCCcEEEEEEeccccccccccHHHHHHHHHHHhcCCCCHHHHHhhhhcCCceEEEecCc
Confidence            345678999999999999884  567777888665433444466788999999999999999999999999999999999


Q ss_pred             CCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        182 AWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       182 ~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      + ++|.+++.... ..+++..+..++.|++.||.|||+.+  |+||||+|+||+++
T Consensus        81 ~-~~l~~~i~~~~-~~~~~~~~~~~~~~i~~~l~~LH~~~--i~H~~l~~~ni~~~  132 (282)
T cd07829          81 D-MDLKKYLDKRP-GPLSPNLIKSIMYQLLRGLAYCHSHR--ILHRDLKPQNILIN  132 (282)
T ss_pred             C-cCHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCChheEEEc
Confidence            7 49999998763 25899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=99.85  E-value=5.9e-21  Score=149.00  Aligned_cols=131  Identities=18%  Similarity=0.266  Sum_probs=108.5

Q ss_pred             CcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhc---CCCceeeeeeeeeCCCc-----
Q psy12580        104 LSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIF---SHPNVLPVIGCVNSPPD-----  173 (239)
Q Consensus       104 ~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l---~h~~iv~l~~~~~~~~~-----  173 (239)
                      |++.+.+|+|+||.||++.++  +..+++|.+............+.+|+.++..+   .|||++++++++...+.     
T Consensus         1 y~~~~~l~~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~~   80 (287)
T cd07838           1 YEELAEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFEHPNIVRLLDVCHGPRTDRELK   80 (287)
T ss_pred             CeEEEEecccCceEEEEEEECCCCCEEEEEEeccccccchhhhhHHHHHHHHHHhhccCCCCcceEEEEEeeccCCCCce
Confidence            456788999999999999984  56778888865443333334566777777655   59999999999987776     


Q ss_pred             eEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        174 LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .+++|||+.+ +|.+++.......+++..++.++.|+++||.|||+.+  ++|+||+|+||+++
T Consensus        81 ~~l~~e~~~~-~l~~~l~~~~~~~l~~~~~~~~~~~i~~al~~LH~~~--i~h~~l~~~nili~  141 (287)
T cd07838          81 LTLVFEHVDQ-DLATYLSKCPKPGLPPETIKDLMRQLLRGVDFLHSHR--IVHRDLKPQNILVT  141 (287)
T ss_pred             eEEEehhccc-CHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHCC--eeeccCChhhEEEc
Confidence            9999999975 8999988755446899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>KOG4279|consensus

Probab=99.85  E-value=1.3e-21  Score=160.56  Aligned_cols=129  Identities=18%  Similarity=0.296  Sum_probs=110.0

Q ss_pred             ccccccCCCCCCceeeccCCCce--eeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEeeCCC
Q psy12580        106 LHTKISSGPNGDTWRGRWQKNDI--VAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAW  183 (239)
Q Consensus       106 ~~~~ig~g~~g~v~~~~~~~~~~--~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~~~  183 (239)
                      -.-++|+|.||.||.|+....++  ++|-+..+  +.+..+.+..|+.+.+.++|.|||+++|.+..++.+-|.||-++|
T Consensus       579 ervVLGKGTYG~VYA~RD~~tqvrIaIKEIpek--dsr~~QPLhEEIaLH~~LrHkNIVrYLGs~senGf~kIFMEqVPG  656 (1226)
T KOG4279|consen  579 ERVVLGKGTYGTVYAARDMDTQVRIAIKEIPEK--DSREVQPLHEEIALHSTLRHKNIVRYLGSVSENGFFKIFMEQVPG  656 (1226)
T ss_pred             ceEEeecCceeEEEeeccccceeEEEeeecccc--cchhhccHHHHHHHHHHHhhHhHHHHhhccCCCCeEEEEeecCCC
Confidence            34469999999999999866544  44655443  344567788999999999999999999999999999999999999


Q ss_pred             CCHHHHhhcCCCccc--CHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceeecC
Q psy12580        184 GSLYALLHEGAGIVV--DFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVYIL  239 (239)
Q Consensus       184 gsL~~~l~~~~~~~~--~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~~~  239 (239)
                      |||.++++..=| ++  .+.+.-.+.+||++||.|||+..  |||||||-.|+|+.-|
T Consensus       657 GSLSsLLrskWG-PlKDNEstm~fYtkQILeGLkYLHen~--IVHRDIKGDNVLvNTy  711 (1226)
T KOG4279|consen  657 GSLSSLLRSKWG-PLKDNESTMNFYTKQILEGLKYLHENK--IVHRDIKGDNVLVNTY  711 (1226)
T ss_pred             CcHHHHHHhccC-CCccchhHHHHHHHHHHHHhhhhhhcc--eeeccccCCcEEEeec
Confidence            999999987432 45  68899999999999999999999  9999999999998643

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=99.85  E-value=9.6e-21  Score=150.07  Aligned_cols=132  Identities=17%  Similarity=0.220  Sum_probs=110.6

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccC-CchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEE
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNC-TPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVIS  178 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~  178 (239)
                      ..|...+.+|+|+||.||++..  .+..+++|.+..... .......+..|+.+++.++|||++++++++......++||
T Consensus        25 ~~f~~~~~lg~G~~~~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  104 (317)
T cd06635          25 KLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPNSIEYKGCYLREHTAWLVM  104 (317)
T ss_pred             hhhhhhheeccCCCeEEEEEEEcCCCcEEEEEEEecCCCCchHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCeEEEEE
Confidence            4467778899999999999986  345677777754322 2333457888999999999999999999999999999999


Q ss_pred             eeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        179 QYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       179 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||+.+ +|.+++.... ..+++..+..++.|++.||.|||+.+  |+||||+|+||+++
T Consensus       105 e~~~g-~l~~~~~~~~-~~l~~~~~~~i~~~i~~~l~~lH~~~--i~H~dL~p~Nil~~  159 (317)
T cd06635         105 EYCLG-SASDLLEVHK-KPLQEVEIAAITHGALQGLAYLHSHN--MIHRDIKAGNILLT  159 (317)
T ss_pred             eCCCC-CHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCCcccEEEC
Confidence            99965 8888876543 25899999999999999999999999  99999999999986

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.85  E-value=5.3e-21  Score=140.32  Aligned_cols=124  Identities=15%  Similarity=0.130  Sum_probs=93.4

Q ss_pred             cccccCCCCCCceeeccC-CCceeeeeeeeccCCchH------------------------HHHHHHHHhHhhhcCCCce
Q psy12580        107 HTKISSGPNGDTWRGRWQ-KNDIVAKILAVRNCTPRV------------------------SRDFNEEFPKLRIFSHPNV  161 (239)
Q Consensus       107 ~~~ig~g~~g~v~~~~~~-~~~~~vk~~~~~~~~~~~------------------------~~~~~~e~~~l~~l~h~~i  161 (239)
                      ...||+|++|.||+|... +..+++|++.........                        ...+..|...+.++.++++
T Consensus         2 ~~~ig~G~~~~Vy~a~~~~g~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i   81 (190)
T cd05145           2 NGCISTGKEANVYHARTGDGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKRLYEAGV   81 (190)
T ss_pred             CceeecCCCcEEEEEEcCCCCEEEEEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            457899999999999874 788889998764221100                        1223578889999988876


Q ss_pred             eeeeeeeeCCCceEEEEeeCCCCCHHHH-hhcCCCcccCHHHHHHHHHHHHHHhhhhhc-CCCCcccCCCCCccceee
Q psy12580        162 LPVIGCVNSPPDLVVISQYMAWGSLYAL-LHEGAGIVVDFAQALRFAVDVARGMAFLHS-LERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       162 v~l~~~~~~~~~~~lv~e~~~~gsL~~~-l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~-~~~~ivHrdikp~Nill~  237 (239)
                      .....+...  ..+|||||++++++... +.. .  .++...+..++.|++.+|.++|+ .|  |+||||||+|||++
T Consensus        82 ~~p~~~~~~--~~~lVmE~~~g~~~~~~~l~~-~--~~~~~~~~~i~~~l~~~l~~lH~~~g--ivHrDlkP~NIll~  152 (190)
T cd05145          82 PVPEPILLK--KNVLVMEFIGDDGSPAPRLKD-V--PLEEEEAEELYEQVVEQMRRLYQEAG--LVHGDLSEYNILYH  152 (190)
T ss_pred             CCceEEEec--CCEEEEEEecCCCchhhhhhh-c--cCCHHHHHHHHHHHHHHHHHHHHhCC--EecCCCChhhEEEE
Confidence            443333322  24899999998765443 333 2  47888999999999999999999 99  99999999999985

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=99.85  E-value=3.2e-21  Score=154.38  Aligned_cols=128  Identities=17%  Similarity=0.313  Sum_probs=107.7

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCC--------
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSP--------  171 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~--------  171 (239)
                      ..|...+.||.|+||.||+|..  .+..+++|.+.....  ...+.+.+|+.+++.++||||+++++++...        
T Consensus         5 ~~y~~~~~Lg~g~~g~vy~~~~~~~~~~v~iK~i~~~~~--~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~~   82 (342)
T cd07854           5 SRYMDLRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTDP--QSVKHALREIKIIRRLDHDNIVKVYEVLGPSGSDLTEDV   82 (342)
T ss_pred             cceEEEEEecCCCCEEEEEEEECCCCcEEEEEEEecCCC--chHHHHHHHHHHHHhcCCCcchhhHhhhccccccccccc
Confidence            5678889999999999999987  356677787755432  3346688899999999999999999876544        


Q ss_pred             ------CceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        172 ------PDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       172 ------~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                            ...++|+||++ ++|.+++...   .+++..++.++.|+++||.|||+.|  |+||||||+||+++
T Consensus        83 ~~~~~~~~~~lv~e~~~-~~L~~~~~~~---~l~~~~~~~~~~qi~~aL~~LH~~g--ivH~dikp~Nili~  148 (342)
T cd07854          83 GSLTELNSVYIVQEYME-TDLANVLEQG---PLSEEHARLFMYQLLRGLKYIHSAN--VLHRDLKPANVFIN  148 (342)
T ss_pred             ccccccceEEEEeeccc-ccHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHhCC--cccCCCCHHHEEEc
Confidence                  24789999997 4999888654   4899999999999999999999999  99999999999996

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=99.85  E-value=5.3e-21  Score=146.36  Aligned_cols=124  Identities=18%  Similarity=0.250  Sum_probs=108.7

Q ss_pred             ccCCCCCCceeeccC--CCceeeeeeeeccCC-chHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEeeCCCCCH
Q psy12580        110 ISSGPNGDTWRGRWQ--KNDIVAKILAVRNCT-PRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSL  186 (239)
Q Consensus       110 ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~~~gsL  186 (239)
                      +|+|+||.||++...  +..+++|.+...... ......+..|+.+++.++||||+++++.+..++..+++|||+++++|
T Consensus         1 lg~G~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L   80 (250)
T cd05123           1 LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVKLHYAFQTEEKLYLVLEYAPGGEL   80 (250)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEeehhhhcchHHHHHHHHHHHHHHHcCCCcHHHHHHHeecCCeeEEEEecCCCCcH
Confidence            689999999999874  567777887654332 22446788899999999999999999999999999999999999999


Q ss_pred             HHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        187 YALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       187 ~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .+++....  .+++..+..++.|++.||.|||+.+  ++|+||+|+||+++
T Consensus        81 ~~~l~~~~--~l~~~~~~~~~~qi~~~l~~lh~~~--~~H~~l~p~ni~~~  127 (250)
T cd05123          81 FSHLSKEG--RFSEERARFYAAEIVLALEYLHSLG--IIYRDLKPENILLD  127 (250)
T ss_pred             HHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCC--ceecCCCcceEEEc
Confidence            99998765  5899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=99.85  E-value=5e-21  Score=149.13  Aligned_cols=130  Identities=19%  Similarity=0.328  Sum_probs=111.4

Q ss_pred             CcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEeeC
Q psy12580        104 LSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYM  181 (239)
Q Consensus       104 ~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~  181 (239)
                      |...+.||+|++|.||++...  +..+++|.+............+..|+.+++.++|++|+++++++..++..++|+||+
T Consensus         1 y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~   80 (283)
T cd05118           1 YQKLGKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKELNHPNIIKLLDVFRHKGDLYLVFEFM   80 (283)
T ss_pred             CccceeeecCCCceEEEEEcCCCCcEEEEEEeccccccchhHHHHHHHHHHHHHhcCCCcchHHHhhccCCCEEEEEecc
Confidence            345678999999999999873  456777877655444344567888999999999999999999999999999999999


Q ss_pred             CCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        182 AWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       182 ~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ++ +|.+++.... ..+++..+..++.|++.||.|||+.+  |+|+||||+||+++
T Consensus        81 ~~-~l~~~l~~~~-~~~~~~~~~~~~~~i~~~l~~LH~~~--i~H~dl~p~nili~  132 (283)
T cd05118          81 DT-DLYKLIKDRQ-RGLPESLIKSYLYQLLQGLAFCHSHG--ILHRDLKPENLLIN  132 (283)
T ss_pred             CC-CHHHHHHhhc-ccCCHHHHHHHHHHHHHHHHHHHHCC--eeecCcCHHHEEEC
Confidence            75 9999887754 36899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=99.85  E-value=3.9e-21  Score=151.76  Aligned_cols=133  Identities=20%  Similarity=0.380  Sum_probs=109.4

Q ss_pred             CCCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCC------
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP------  172 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~------  172 (239)
                      ..+|.+.+.||+|++|.||+|...  +..+++|.+............+.+|+.+++.++||||+++++++....      
T Consensus         7 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   86 (311)
T cd07866           7 LRDYEILGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKILKKLKHPNVVPLIDMAVERPDKSKRK   86 (311)
T ss_pred             cccEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEEeccCCCCcchhHHHHHHHHHhcCCCCccchhhheeccccccccc
Confidence            467889999999999999999873  566778887654333323345678999999999999999998774433      


Q ss_pred             --ceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        173 --DLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       173 --~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                        .+++|+||+.+ +|...+.... ..+++..+..++.|+++||.|||+.+  |+|+||||+||+++
T Consensus        87 ~~~~~lv~~~~~~-~l~~~~~~~~-~~~~~~~~~~i~~~l~~al~~lH~~~--i~H~dl~p~nil~~  149 (311)
T cd07866          87 RGSVYMVTPYMDH-DLSGLLENPS-VKLTESQIKCYMLQLLEGINYLHENH--ILHRDIKAANILID  149 (311)
T ss_pred             CceEEEEEecCCc-CHHHHHhccc-cCCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCCHHHEEEC
Confidence              46999999965 7887776543 26999999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>KOG0596|consensus

Probab=99.85  E-value=5.5e-21  Score=152.93  Aligned_cols=137  Identities=10%  Similarity=0.097  Sum_probs=119.8

Q ss_pred             ccCCCCCCCcccccccCCCCCCceeeccCC-CceeeeeeeeccCCchHHHHHHHHHhHhhhc-CCCceeeeeeeeeCCCc
Q psy12580         96 HKGISLNDLSLHTKISSGPNGDTWRGRWQK-NDIVAKILAVRNCTPRVSRDFNEEFPKLRIF-SHPNVLPVIGCVNSPPD  173 (239)
Q Consensus        96 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~-~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~l~~~~~~~~~  173 (239)
                      ...++...|++.+.||+|+.+.||++...+ +-+++|.+.....+....+.|.+|+..|.++ .|.+||++++|-..++.
T Consensus       355 ~i~Vkg~~Yeilk~iG~GGSSkV~kV~~s~~~iyalkkv~~~~~D~qtl~gy~nEI~lL~KLkg~~~IIqL~DYEv~d~~  434 (677)
T KOG0596|consen  355 IIKVKGREYEILKQIGSGGSSKVFKVLNSDKQIYALKKVVLLEADNQTLDGYRNEIALLNKLKGHDKIIQLYDYEVTDGY  434 (677)
T ss_pred             eEEECcchhhHHHhhcCCCcceeeeeecCCCcchhhhHHHHhhcCHHHHHHHHHHHHHHHHhcCCceEEEEeeeeccCce
Confidence            345677889999999999999999998855 5566677777777788889999999999999 58999999999999999


Q ss_pred             eEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCcccee
Q psy12580        174 LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV  236 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill  236 (239)
                      +|||||+-+. +|.++|+..... .+...++.+..||+.|+.++|..|  |||.||||.|+|+
T Consensus       435 lYmvmE~Gd~-DL~kiL~k~~~~-~~~~~lk~ywkqML~aV~~IH~~g--IVHSDLKPANFLl  493 (677)
T KOG0596|consen  435 LYMVMECGDI-DLNKILKKKKSI-DPDWFLKFYWKQMLLAVKTIHQHG--IVHSDLKPANFLL  493 (677)
T ss_pred             EEEEeecccc-cHHHHHHhccCC-CchHHHHHHHHHHHHHHHHHHHhc--eeecCCCcccEEE
Confidence            9999999866 999999987643 443489999999999999999999  9999999999986

>KOG4412|consensus

Probab=99.85  E-value=2e-22  Score=138.82  Aligned_cols=111  Identities=25%  Similarity=0.420  Sum_probs=96.4

Q ss_pred             CccCCC-CCchHHHHHHHhCCHHHHHHHHH-CCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCc
Q psy12580          4 VSVTDD-HGFSPLHWACKEGHLKLVELLLQ-RGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSW   81 (239)
Q Consensus         4 v~~~~~-~g~tpl~~a~~~~~~~~~~~ll~-~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (239)
                      .|.+|. ||+|||||||..|+.+++.+|++ .+..+|.+|..||||||.|+..|+.++|+.|+.+.+++++.++..|.|+
T Consensus        30 L~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~  109 (226)
T KOG4412|consen   30 LNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTC  109 (226)
T ss_pred             hhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcce
Confidence            356666 99999999999999999999994 5889999999999999999999999999999877799999999999999


Q ss_pred             cccccccCccccccccCCCCCCCcccccccCCC
Q psy12580         82 LGLKTRSRDATLSRHKGISLNDLSLHTKISSGP  114 (239)
Q Consensus        82 l~~a~~~~~~~~~~~~~~~~~~~~~~~~ig~g~  114 (239)
                      +++|...+...+.+...-....+++.+..|+.+
T Consensus       110 LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtp  142 (226)
T KOG4412|consen  110 LHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTP  142 (226)
T ss_pred             ehhhhcCChhhHHHHHHhcCCCCcccccccCch
Confidence            999999988888876655556666666777665

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=99.85  E-value=3.8e-21  Score=154.01  Aligned_cols=131  Identities=15%  Similarity=0.209  Sum_probs=110.9

Q ss_pred             CCCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCc-----
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPD-----  173 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~-----  173 (239)
                      .++|.....||+|++|.||+|...  +..+++|.+............+.+|+.+++.+.|||++++++++...+.     
T Consensus        14 ~~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   93 (343)
T cd07851          14 PDRYQNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQSAIHAKRTYRELRLLKHMDHENVIGLLDVFTPASSLEDFQ   93 (343)
T ss_pred             cCceEEEEEeccCCceEEEEEEECCCCcEEEEEecccccchhhHHHHHHHHHHHHHhccCCCHHHHHHHhhccccccccc
Confidence            467888999999999999999874  4667778775443333344667789999999999999999988766554     


Q ss_pred             -eEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        174 -LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 -~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                       .++|+||+ +++|.+++...   .+++..+..++.|+++||.|||+.|  |+||||||+||+++
T Consensus        94 ~~~lv~e~~-~~~L~~~~~~~---~l~~~~~~~~~~ql~~aL~~LH~~g--i~H~dlkp~Nill~  152 (343)
T cd07851          94 DVYLVTHLM-GADLNNIVKCQ---KLSDDHIQFLVYQILRGLKYIHSAG--IIHRDLKPSNIAVN  152 (343)
T ss_pred             cEEEEEecC-CCCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCCHHHeEEC
Confidence             89999999 56999998764   4899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=99.85  E-value=1.9e-20  Score=148.14  Aligned_cols=130  Identities=18%  Similarity=0.254  Sum_probs=108.6

Q ss_pred             CcccccccCCCCCCceeecc--CCCceeeeeeeeccC-CchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEee
Q psy12580        104 LSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNC-TPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQY  180 (239)
Q Consensus       104 ~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~  180 (239)
                      +...+.+|+|+||.||+|..  .+..+++|.+..... .......+..|+.+++.++|||++++++++......++||||
T Consensus        23 ~~~~~~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~  102 (313)
T cd06633          23 FVGLHEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPNTIEYKGCYLKEHTAWLVMEY  102 (313)
T ss_pred             hhcceeeccCCCeEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEEec
Confidence            34456799999999999986  456677777754322 233345678899999999999999999999999999999999


Q ss_pred             CCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        181 MAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       181 ~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +. |++.+++.... ..+++.++..++.|++.||.|||+.|  ++|+||||+||+++
T Consensus       103 ~~-~~l~~~l~~~~-~~l~~~~~~~~~~qi~~al~~LH~~g--i~H~dl~p~nili~  155 (313)
T cd06633         103 CL-GSASDLLEVHK-KPLQEVEIAAITHGALQGLAYLHSHN--MIHRDIKAGNILLT  155 (313)
T ss_pred             CC-CCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCChhhEEEC
Confidence            96 58888886544 25899999999999999999999999  99999999999986

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=99.85  E-value=5.9e-21  Score=145.16  Aligned_cols=114  Identities=15%  Similarity=0.143  Sum_probs=96.9

Q ss_pred             CCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEeeCCCCCHHHHh
Q psy12580        113 GPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALL  190 (239)
Q Consensus       113 g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~~~gsL~~~l  190 (239)
                      |.+|.||++..  .+..+++|.+....       .+..|...+....||||+++++++...+..+++|||+++|+|.+++
T Consensus         4 g~~~~v~~~~~~~~~~~~~~K~i~~~~-------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l   76 (237)
T cd05576           4 GVIDKVLLVMDTRTQQTFILKGLRKSS-------EYSRERLTIIPHCVPNMVCLHKYIVSEDSVFLVLQHAEGGKLWSHI   76 (237)
T ss_pred             cccceEEEEEEccCCcEEEEEeecchh-------hhhhHHHHHHhcCCCceeehhhheecCCeEEEEEecCCCCCHHHHH
Confidence            78999999987  45667788875432       1223444455567999999999999999999999999999999999


Q ss_pred             hcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        191 HEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ....  .+++..+..++.|+++||+|||+.+  |+||||||+||+++
T Consensus        77 ~~~~--~l~~~~~~~~~~ql~~~l~~lH~~~--i~H~dlkp~Nil~~  119 (237)
T cd05576          77 SKFL--NIPEECVKRWAAEMVVALDALHREG--IVCRDLNPNNILLD  119 (237)
T ss_pred             HHhc--CCCHHHHHHHHHHHHHHHHHHHhCC--eeccCCCHHHEEEc
Confidence            8765  5899999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>KOG0986|consensus

Probab=99.84  E-value=1.1e-21  Score=153.56  Aligned_cols=139  Identities=15%  Similarity=0.155  Sum_probs=119.1

Q ss_pred             cCCCCCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCC-chHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCc
Q psy12580         97 KGISLNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCT-PRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPD  173 (239)
Q Consensus        97 ~~~~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~  173 (239)
                      ..+..+.+..-.+||+|+||.|+.++.  .|.-++.|.+.++... ...+....+|..+|.+++.+.||.+--+|.+.+.
T Consensus       180 qpvt~n~F~~~RvlGkGGFGEV~acqvraTGKMYAcKkL~KKRiKkr~ge~maLnEk~iL~kV~s~FiVslaYAfeTkd~  259 (591)
T KOG0986|consen  180 QPVTKNTFRVYRVLGKGGFGEVCACQVRATGKMYACKKLDKKRIKKRKGETMALNEKQILEKVSSPFIVSLAYAFETKDA  259 (591)
T ss_pred             hhccccceeeeEEEecccccceeEEEEecchhhHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhccCcEEEEeeeecCCCc
Confidence            445667788888999999999998876  4566777776544222 2223556789999999999999999999999999


Q ss_pred             eEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        174 LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +++|+..|.||+|.-.|...++..|++..+..++.+|+-||++||+.+  ||.||+||+|||||
T Consensus       260 LClVLtlMNGGDLkfHiyn~g~~gF~e~ra~FYAAEi~cGLehlH~~~--iVYRDLKPeNILLD  321 (591)
T KOG0986|consen  260 LCLVLTLMNGGDLKFHIYNHGNPGFDEQRARFYAAEIICGLEHLHRRR--IVYRDLKPENILLD  321 (591)
T ss_pred             eEEEEEeecCCceeEEeeccCCCCCchHHHHHHHHHHHhhHHHHHhcc--eeeccCChhheeec
Confidence            999999999999998888777678999999999999999999999999  99999999999998

>KOG0608|consensus

Probab=99.84  E-value=4.1e-21  Score=156.15  Aligned_cols=136  Identities=12%  Similarity=0.120  Sum_probs=115.7

Q ss_pred             CCCCCCcccccccCCCCCCceeeccCC--CceeeeeeeeccCC-chHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceE
Q psy12580         99 ISLNDLSLHTKISSGPNGDTWRGRWQK--NDIVAKILAVRNCT-PRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLV  175 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g~~g~v~~~~~~~--~~~~vk~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~  175 (239)
                      .+.+-|...+.||-|+||.|..++-.+  ..++.|.+.+.... .........|-.+|.....+-||+||-.|.+.+.+|
T Consensus       626 MdKSmFvkik~iGvGAFGeV~Lv~KvDT~~lYAmKTLrKaDVl~rnQvaHVKAERDILAEADn~WVVrLyySFQDkdnLY  705 (1034)
T KOG0608|consen  626 MDKSMFVKIKTIGVGAFGEVCLVRKVDTRALYAMKTLRKADVLMRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLY  705 (1034)
T ss_pred             ccccceEEEeeecccccceeEEEeecchhhHHHHhhhHHHHHHhhhhhhhhhhhhhhHhhcCCcceEEEEEEeccCCceE
Confidence            445667778889999999999887533  34556777554322 233345678889999999999999999999999999


Q ss_pred             EEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceeec
Q psy12580        176 VISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVYI  238 (239)
Q Consensus       176 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~~  238 (239)
                      +||||++||++.++|.+.+  .|++..++.++.++.-|+++.|..|  +|||||||+|||||-
T Consensus       706 FVMdYIPGGDmMSLLIrmg--IFeE~LARFYIAEltcAiesVHkmG--FIHRDiKPDNILIDr  764 (1034)
T KOG0608|consen  706 FVMDYIPGGDMMSLLIRMG--IFEEDLARFYIAELTCAIESVHKMG--FIHRDIKPDNILIDR  764 (1034)
T ss_pred             EEEeccCCccHHHHHHHhc--cCHHHHHHHHHHHHHHHHHHHHhcc--ceecccCccceEEcc
Confidence            9999999999999998877  7999999999999999999999999  999999999999983

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=99.84  E-value=2.2e-20  Score=147.49  Aligned_cols=132  Identities=18%  Similarity=0.249  Sum_probs=109.8

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeecc-CCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEE
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRN-CTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVIS  178 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~  178 (239)
                      ..|...+.+|+|++|.||+|..  .+..+++|.+.... ......+.+..|+.+++.++|+|++++++++......++|+
T Consensus        15 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   94 (308)
T cd06634          15 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVM   94 (308)
T ss_pred             HHHHHHHheeeCCCEEEEEEEEcCCCcEEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCcccEEEEEEcCCeeEEEE
Confidence            4466678899999999999987  34556777765432 22333456788999999999999999999999999999999


Q ss_pred             eeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        179 QYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       179 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||+. |++.+++.... ..+++..+..++.|++.||.|||+.+  ++||||||+||+++
T Consensus        95 e~~~-~~l~~~~~~~~-~~l~~~~~~~~~~~l~~~l~~LH~~~--i~H~dl~p~nil~~  149 (308)
T cd06634          95 EYCL-GSASDLLEVHK-KPLQEVEIAAVTHGALQGLAYLHSHN--MIHRDVKAGNILLS  149 (308)
T ss_pred             EccC-CCHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHHHHhCC--cccCCCCHHhEEEC
Confidence            9996 58888876543 25899999999999999999999999  99999999999986

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>KOG0669|consensus

Probab=99.84  E-value=1.2e-22  Score=148.29  Aligned_cols=133  Identities=15%  Similarity=0.294  Sum_probs=108.3

Q ss_pred             CCCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCC-------
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSP-------  171 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~-------  171 (239)
                      .+.|....++|+|.||.||+|+..  ++.|++|.+...+..........+|+.+|..++|+|++.+++.|.+.       
T Consensus        16 ~~~yek~~kigqGtfgeVFkAr~~n~~kkvalkkvlmeneKeGfpitalreikiL~~lkHenv~nliEic~tk~Tp~~r~   95 (376)
T KOG0669|consen   16 VSKYEKLAKIGQGTFGEVFKARSKNTGKKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPTNRD   95 (376)
T ss_pred             chHHHHHHhcCCchHHHHHHHhhcCccchhHHHHHHHhccccCCcHHHHHHHHHHHHhcchhHHHHHHHHhhccCCcccc
Confidence            456777789999999999999873  45566655544333333335567899999999999999998877432       


Q ss_pred             -CceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        172 -PDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       172 -~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                       ..+++|+++|+. +|.-++.... ..++..++.+++.++..||.|+|+..  |+|||+||+|+||+
T Consensus        96 r~t~ylVf~~ceh-DLaGlLsn~~-vr~sls~Ikk~Mk~Lm~GL~~iHr~k--ilHRDmKaaNvLIt  158 (376)
T KOG0669|consen   96 RATFYLVFDFCEH-DLAGLLSNRK-VRFSLSEIKKVMKGLMNGLYYIHRNK--ILHRDMKAANVLIT  158 (376)
T ss_pred             cceeeeeHHHhhh-hHHHHhcCcc-ccccHHHHHHHHHHHHHHHHHHHHhh--HHhhcccHhhEEEc
Confidence             148999999988 9999887653 36999999999999999999999999  99999999999996

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=99.84  E-value=2.1e-20  Score=146.74  Aligned_cols=136  Identities=15%  Similarity=0.228  Sum_probs=111.9

Q ss_pred             cCCCCCCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhc-CCCceeeeeeeeeCCCc
Q psy12580         97 KGISLNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIF-SHPNVLPVIGCVNSPPD  173 (239)
Q Consensus        97 ~~~~~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~l~~~~~~~~~  173 (239)
                      ..+..++|.+.+.+|+|++|.||++.++  +..+++|.+..... ......+..|..++... .||||+++++++.....
T Consensus        10 ~~~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~   88 (296)
T cd06618          10 YPADLNDLENLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGN-KEENKRILMDLDVVLKSHDCPYIVKCYGYFITDSD   88 (296)
T ss_pred             ccCCcchheeeeEeeccCCeEEEEEEECCCCeEEEEEEEeccCC-hHHHHHHHHHHHHHHhccCCCchHhhheeeecCCe
Confidence            3456688899999999999999999986  67778888764332 22335566677767666 59999999999999999


Q ss_pred             eEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhc-CCCCcccCCCCCccceee
Q psy12580        174 LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS-LERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~-~~~~ivHrdikp~Nill~  237 (239)
                      .+++|||+++ ++.+++....+ .+++..+..++.|++.||.|||+ .+  |+||||+|+||+++
T Consensus        89 ~~~v~e~~~~-~l~~l~~~~~~-~l~~~~~~~i~~~i~~~l~~lH~~~~--i~H~dl~p~nill~  149 (296)
T cd06618          89 VFICMELMST-CLDKLLKRIQG-PIPEDILGKMTVAIVKALHYLKEKHG--VIHRDVKPSNILLD  149 (296)
T ss_pred             EEEEeeccCc-CHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHhhCC--EecCCCcHHHEEEc
Confidence            9999999854 88887766432 68999999999999999999997 58  99999999999986

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>KOG0690|consensus

Probab=99.83  E-value=2.5e-21  Score=146.23  Aligned_cols=138  Identities=16%  Similarity=0.200  Sum_probs=120.2

Q ss_pred             ccCCCCCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCc-hHHHHHHHHHhHhhhcCCCceeeeeeeeeCCC
Q psy12580         96 HKGISLNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTP-RVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP  172 (239)
Q Consensus        96 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~-~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~  172 (239)
                      ...+..++++..+++|+|.||+|..++.  .++.+++|++++..... .+...-..|-++|+..+||.+..+--.|.+.+
T Consensus       162 ~~kvTm~dFdfLKvLGkGTFGKVIL~rEKat~k~YAiKIlkKeviiakdEVAHTlTE~RVL~~~~HPFLt~LKYsFQt~d  241 (516)
T KOG0690|consen  162 KNKVTMEDFDFLKVLGKGTFGKVILCREKATGKLYAIKILKKEVIIAKDEVAHTLTENRVLQNCRHPFLTSLKYSFQTQD  241 (516)
T ss_pred             cceeccchhhHHHHhcCCccceEEEEeecccCceeehhhhhhhheeehHHhhhhhhHHHHHHhccCcHHHHhhhhhccCc
Confidence            3446778999999999999999998876  45778889887764433 33345677899999999999999988899999


Q ss_pred             ceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        173 DLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       173 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ++|+||||..||.|+-.|.+..  .+++..++.+..+|+.||.|||+.+  ||.||||.+|+|+|
T Consensus       242 rlCFVMeyanGGeLf~HLsrer--~FsE~RtRFYGaEIvsAL~YLHs~~--ivYRDlKLENLlLD  302 (516)
T KOG0690|consen  242 RLCFVMEYANGGELFFHLSRER--VFSEDRTRFYGAEIVSALGYLHSRN--IVYRDLKLENLLLD  302 (516)
T ss_pred             eEEEEEEEccCceEeeehhhhh--cccchhhhhhhHHHHHHhhhhhhCC--eeeeechhhhheec
Confidence            9999999999999998887765  7999999999999999999999999  99999999999997

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=99.83  E-value=1.7e-20  Score=150.13  Aligned_cols=129  Identities=16%  Similarity=0.237  Sum_probs=106.7

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCC------c
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP------D  173 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~------~  173 (239)
                      ..|...+.||+|+||.||+|..  .+..+++|.+............+.+|+.+++.+.||||+++++++....      .
T Consensus        15 ~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~   94 (342)
T cd07879          15 ERYTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELTLLKHMQHENVIGLLDVFTSAVSGDEFQD   94 (342)
T ss_pred             cceEEEEEeeecCCeEEEEEEeCCCCcEEEEEEecCccccccchhHHHHHHHHHHhcCCCCccchhheecccccCCCCce
Confidence            4677889999999999999986  4567788877544333333456788999999999999999999886543      4


Q ss_pred             eEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        174 LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .++|+||+.. +|.+++..    .+++..+..++.|++.||.|||+.+  |+||||||+||+++
T Consensus        95 ~~lv~e~~~~-~l~~~~~~----~~~~~~~~~~~~qi~~aL~~LH~~~--i~H~dlkp~NIll~  151 (342)
T cd07879          95 FYLVMPYMQT-DLQKIMGH----PLSEDKVQYLVYQMLCGLKYIHSAG--IIHRDLKPGNLAVN  151 (342)
T ss_pred             EEEEeccccc-CHHHHHcC----CCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCCHHHEEEC
Confidence            6999999965 78776532    5889999999999999999999999  99999999999986

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>KOG1027|consensus

Probab=99.83  E-value=7.8e-21  Score=158.30  Aligned_cols=127  Identities=22%  Similarity=0.298  Sum_probs=105.1

Q ss_pred             CcccccccCCCCCC-ceeeccCCCceeeeeeeeccCCchHHHHHHHHHhHhhhc-CCCceeeeeeeeeCCCceEEEEeeC
Q psy12580        104 LSLHTKISSGPNGD-TWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIF-SHPNVLPVIGCVNSPPDLVVISQYM  181 (239)
Q Consensus       104 ~~~~~~ig~g~~g~-v~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~l~~~~~~~~~~~lv~e~~  181 (239)
                      +...+.+|.|+-|. ||+|.+.+++|+||.+....     .+-..+|+..|+.. .|||||++++.-.+....||..|.|
T Consensus       511 ~~~~eilG~Gs~Gt~Vf~G~ye~R~VAVKrll~e~-----~~~A~rEi~lL~eSD~H~NviRyyc~E~d~qF~YIalELC  585 (903)
T KOG1027|consen  511 FSPKEILGYGSNGTVVFRGVYEGREVAVKRLLEEF-----FDFAQREIQLLQESDEHPNVIRYYCSEQDRQFLYIALELC  585 (903)
T ss_pred             eccHHHcccCCCCcEEEEEeeCCceehHHHHhhHh-----HHHHHHHHHHHHhccCCCceEEEEeeccCCceEEEEehHh
Confidence            34556788998887 79999999999999886433     23456899999988 6999999999999999999999999


Q ss_pred             CCCCHHHHhhcCC--CcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceeec
Q psy12580        182 AWGSLYALLHEGA--GIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVYI  238 (239)
Q Consensus       182 ~~gsL~~~l~~~~--~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~~  238 (239)
                      .. +|.+++....  .........+.+..|+++||++||+.+  ||||||||+||||+.
T Consensus       586 ~~-sL~dlie~~~~d~~~~~~i~~~~~l~q~~~GlaHLHsl~--iVHRDLkPQNILI~~  641 (903)
T KOG1027|consen  586 AC-SLQDLIESSGLDVEMQSDIDPISVLSQIASGLAHLHSLK--IVHRDLKPQNILISV  641 (903)
T ss_pred             hh-hHHHHHhccccchhhcccccHHHHHHHHHHHHHHHHhcc--cccccCCCceEEEEc
Confidence            66 9999998741  111112456889999999999999999  999999999999974

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=99.83  E-value=2.6e-20  Score=153.84  Aligned_cols=138  Identities=17%  Similarity=0.151  Sum_probs=101.4

Q ss_pred             CCCCCCCcccccccCCCCCCceeecc------------------CCCceeeeeeeeccCCc------------hHHHHHH
Q psy12580         98 GISLNDLSLHTKISSGPNGDTWRGRW------------------QKNDIVAKILAVRNCTP------------RVSRDFN  147 (239)
Q Consensus        98 ~~~~~~~~~~~~ig~g~~g~v~~~~~------------------~~~~~~vk~~~~~~~~~------------~~~~~~~  147 (239)
                      ..+.++|.+.++||+|+||.||+|.+                  .+..+++|.+.......            ...+...
T Consensus       141 r~~~d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl~e~~~~~~~~e~~~  220 (507)
T PLN03224        141 RWSSDDFQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVRQDFLKTGTLAKGSAETGM  220 (507)
T ss_pred             CccccCceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccchhhHHHHHhhhhhhhcccchhH
Confidence            35678999999999999999999863                  22457778775432110            0112234


Q ss_pred             HHHhHhhhcCCCc-----eeeeeeeeeC--------CCceEEEEeeCCCCCHHHHhhcCCC-------------------
Q psy12580        148 EEFPKLRIFSHPN-----VLPVIGCVNS--------PPDLVVISQYMAWGSLYALLHEGAG-------------------  195 (239)
Q Consensus       148 ~e~~~l~~l~h~~-----iv~l~~~~~~--------~~~~~lv~e~~~~gsL~~~l~~~~~-------------------  195 (239)
                      .|+.++.+++|.+     +++++++|..        .+..++|+||+++|+|.+++....+                   
T Consensus       221 vE~~~l~~l~~~~l~~~~~~~~lg~~~~~~~~g~~~~~~~~LV~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~g~~l~~~  300 (507)
T PLN03224        221 VEAYMCAKIKRNPIAAASCAEYLGYFTSNTADGAFTKGSQWLVWKFESDATLGDALDGKLGPFPGCLEEFMMAGKKIPDN  300 (507)
T ss_pred             HHHHHHHHhhcccchhhhhhhhhhhcccccccccccCCceEEEEEcCCCCcHHHHHhhccCCCcchHHHHHhcCCchhhh
Confidence            4666667776554     4677777643        3468999999999999999874211                   


Q ss_pred             ---cccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        196 ---IVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       196 ---~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                         ..+++..++.++.|++.||.|||+.+  |+||||||+|||++
T Consensus       301 ~~~~~~~~~~~~~i~~ql~~aL~~lH~~~--ivHrDLKp~NILl~  343 (507)
T PLN03224        301 MPQDKRDINVIKGVMRQVLTGLRKLHRIG--IVHRDIKPENLLVT  343 (507)
T ss_pred             cccccCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCchHhEEEC
Confidence               12456788999999999999999999  99999999999986

>PHA02882 putative serine/threonine kinase; Provisional

Probab=99.83  E-value=5.8e-20  Score=144.12  Aligned_cols=134  Identities=14%  Similarity=0.170  Sum_probs=96.6

Q ss_pred             CCCCCCcccccccCCCCCCceeeccCCC-----ceeeeeeeeccCCchHH---------HHHHHHHhHhhhcCCCceeee
Q psy12580         99 ISLNDLSLHTKISSGPNGDTWRGRWQKN-----DIVAKILAVRNCTPRVS---------RDFNEEFPKLRIFSHPNVLPV  164 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g~~g~v~~~~~~~~-----~~~vk~~~~~~~~~~~~---------~~~~~e~~~l~~l~h~~iv~l  164 (239)
                      +....|.+.+.||+|+||.||+|.+.+.     .+++|+...........         .....+...+..+.|++++++
T Consensus         9 i~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~   88 (294)
T PHA02882          9 ITGKEWKIDKLIGCGGFGCVYETQCASDHCINNQAVAKIENLENETIVMETLVYNNIYDIDKIALWKNIHNIDHLGIPKY   88 (294)
T ss_pred             cCCCceEEeeEEecCCCceEEEEEEcCCcccccceEEEeccccCCchhhHHHHHHhhhhHHHHHHHHHhccCCCCCCCcE
Confidence            4456788999999999999999987543     33445433222111000         112223344556789999999


Q ss_pred             eeeeeCCC----ceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        165 IGCVNSPP----DLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       165 ~~~~~~~~----~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ++++....    ..++++|++.. ++.+.+....  ..++..+..++.|++.||+|||+.+  |+||||||+|||++
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~i~~qi~~~l~~lH~~~--iiHrDiKp~Nill~  160 (294)
T PHA02882         89 YGCGSFKRCRMYYRFILLEKLVE-NTKEIFKRIK--CKNKKLIKNIMKDMLTTLEYIHEHG--ISHGDIKPENIMVD  160 (294)
T ss_pred             EEeeeEecCCceEEEEEEehhcc-CHHHHHHhhc--cCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCCHHHEEEc
Confidence            98765543    34788888754 7777776543  4678889999999999999999999  99999999999986

>KOG0576|consensus

Probab=99.82  E-value=2.2e-21  Score=158.12  Aligned_cols=133  Identities=20%  Similarity=0.299  Sum_probs=117.5

Q ss_pred             CCCCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEE
Q psy12580         99 ISLNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVV  176 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~l  176 (239)
                      -..++|.+...+|+|.+|.||+++.  .+...++|+++....+.  .....+|+-+++..+||||+.++|.+...+.+|+
T Consensus        12 nP~ddyellqrvgsgTygdvyKaRd~~s~elaavkvVkLep~dd--~~~iqqei~~~~dc~h~nivay~gsylr~dklwi   89 (829)
T KOG0576|consen   12 NPQDDYELLQRVGSGTYGDVYKARDKRSGELAAVKVVKLEPGDD--FSGIQQEIGMLRDCRHPNIVAYFGSYLRRDKLWI   89 (829)
T ss_pred             CCccchhheeeecCCcccchhhhcccccCchhhheeeeccCCcc--ccccccceeeeecCCCcChHHHHhhhhhhcCcEE
Confidence            3457889999999999999999997  45677778887664332  2446678889999999999999999999999999


Q ss_pred             EEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        177 ISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       177 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .||||.+|||.+...-.+  ++++.++..++++.++||+|||+.|  -+|||||-.|||++
T Consensus        90 cMEycgggslQdiy~~Tg--plselqiayvcRetl~gl~ylhs~g--k~hRdiKGanillt  146 (829)
T KOG0576|consen   90 CMEYCGGGSLQDIYHVTG--PLSELQIAYVCRETLQGLKYLHSQG--KIHRDIKGANILLT  146 (829)
T ss_pred             EEEecCCCcccceeeecc--cchhHHHHHHHhhhhccchhhhcCC--cccccccccceeec
Confidence            999999999999888777  7999999999999999999999999  88999999999986

>KOG0587|consensus

Probab=99.82  E-value=9.5e-20  Score=152.63  Aligned_cols=131  Identities=19%  Similarity=0.338  Sum_probs=111.6

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhc-CCCceeeeeeeeeC-----CCc
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIF-SHPNVLPVIGCVNS-----PPD  173 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~l~~~~~~-----~~~  173 (239)
                      +.+++.+++|+|.+|.||++..  .++..++|++....   ....+...|..+++.. .|||++.++|++..     ++.
T Consensus        19 d~~ei~evig~Gtygkv~k~k~~~~~~~aa~kI~~~~~---d~deEiE~eynil~~~~~hpnv~~fyg~~~k~~~~~~Dq   95 (953)
T KOG0587|consen   19 DIFEIIEVIGNGTYGKVYKGRHVKTGQLAAIKIMDPTE---DEEEEIELEYNMLKKYSHHPNVATFYGAFIKKDPGNGDQ   95 (953)
T ss_pred             CccEEEEEEeeccceeEEEEeeeecCceeeeEeecCCc---cccHHHHHHHHHHHhccCCCCcceEEEEEEEecCCCCCe
Confidence            4567889999999999998876  55677778775432   2335566788888887 68999999998843     458


Q ss_pred             eEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        174 LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +|||||||.+||..++++...+..+.|..+..|++.++.||.+||...  ++|||||-.|||++
T Consensus        96 LWLVMEfC~gGSVTDLVKn~~g~rl~E~~IaYI~re~lrgl~HLH~nk--viHRDikG~NiLLT  157 (953)
T KOG0587|consen   96 LWLVMEFCGGGSVTDLVKNTKGNRLKEEWIAYILREILRGLAHLHNNK--VIHRDIKGQNVLLT  157 (953)
T ss_pred             EEEEeeccCCccHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHhhcc--eeeecccCceEEEe
Confidence            999999999999999999866778999999999999999999999988  99999999999986

>KOG4412|consensus

Probab=99.82  E-value=1.4e-20  Score=129.80  Aligned_cols=111  Identities=31%  Similarity=0.352  Sum_probs=96.0

Q ss_pred             cCccCCCCCchHHHHHHHhCCHHHHHHHHHC-CCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCc
Q psy12580          3 YVSVTDDHGFSPLHWACKEGHLKLVELLLQR-GARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSW   81 (239)
Q Consensus         3 ~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~-g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (239)
                      .+|-+|..||||||.||..|+.++|+-|+.+ |+|+|+..+.|.||||+|+..|..+++++|+ .+|+.++..|..++||
T Consensus        64 ~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLl-e~ga~i~~kD~~~qtp  142 (226)
T KOG4412|consen   64 KPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLL-EKGALIRIKDKQGQTP  142 (226)
T ss_pred             CCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHH-hcCCCCcccccccCch
Confidence            3566788899999999999999999999998 9999999999999999999999999999995 5899999999999999


Q ss_pred             cccccccCccccccccCCCCCCCcccccccCCC
Q psy12580         82 LGLKTRSRDATLSRHKGISLNDLSLHTKISSGP  114 (239)
Q Consensus        82 l~~a~~~~~~~~~~~~~~~~~~~~~~~~ig~g~  114 (239)
                      ++.|+..+.-.+.+..-.....++..+.-|.++
T Consensus       143 lHRAAavGklkvie~Li~~~a~~n~qDk~G~Tp  175 (226)
T KOG4412|consen  143 LHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTP  175 (226)
T ss_pred             hHHHHhccchhhHHHHHhcCCCCCcccccCccH
Confidence            999998888777776544445555666666554

>KOG1345|consensus

Probab=99.82  E-value=1.4e-20  Score=138.83  Aligned_cols=128  Identities=14%  Similarity=0.322  Sum_probs=107.1

Q ss_pred             CCCcccccccCCCCCCceeeccCC--CceeeeeeeeccCCchHHHHHHHHHhHhhhc-CCCceeeeee-eeeCCCceEEE
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRWQK--NDIVAKILAVRNCTPRVSRDFNEEFPKLRIF-SHPNVLPVIG-CVNSPPDLVVI  177 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~~~--~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~l~~-~~~~~~~~~lv  177 (239)
                      +.|.+.+.+|+|.||.+-.++.++  ..+++|.+....   ...++|.+|...--.+ .|.||+.-|+ .|.+.+.+.++
T Consensus        24 d~y~I~k~lgeG~FgkIlL~eHr~s~t~ivlKavp~p~---tt~~dF~rEfhY~~~Ls~H~hIi~tY~vaFqt~d~YvF~  100 (378)
T KOG1345|consen   24 DVYTINKQLGEGRFGKILLAEHRQSKTRIVLKAVPRPQ---TTQADFVREFHYSFFLSPHQHIIDTYEVAFQTSDAYVFV  100 (378)
T ss_pred             hhhhHHHHhcccceeeEEeeeccCCceEEEeeccCcch---hhHHHHHHHhccceeeccchhhhHHHHHHhhcCceEEEe
Confidence            567888999999999999999865  445556665432   2347799998765555 4789998885 67788899999


Q ss_pred             EeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        178 SQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       178 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +||++.|+|.+-+...+   +.+....+++.|+++|++|+|+.+  +||||||.+||||.
T Consensus       101 qE~aP~gdL~snv~~~G---igE~~~K~v~~ql~SAi~fMHskn--lVHRdlK~eNiLif  155 (378)
T KOG1345|consen  101 QEFAPRGDLRSNVEAAG---IGEANTKKVFAQLLSAIEFMHSKN--LVHRDLKAENILIF  155 (378)
T ss_pred             eccCccchhhhhcCccc---ccHHHHHHHHHHHHHHHHHhhccc--hhhcccccceEEEe
Confidence            99999999999887755   889999999999999999999999  99999999999984

>KOG1163|consensus

Probab=99.81  E-value=1.2e-19  Score=131.84  Aligned_cols=133  Identities=16%  Similarity=0.159  Sum_probs=111.4

Q ss_pred             CCCCCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCC-CceeeeeeeeeCCCce
Q psy12580         98 GISLNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSH-PNVLPVIGCVNSPPDL  174 (239)
Q Consensus        98 ~~~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h-~~iv~l~~~~~~~~~~  174 (239)
                      .+....|.+.++||+|+||.+|.|..  .+.+|++|+-......+    .+..|..+.+.+++ ..|..+..+......-
T Consensus        11 ~iv~gky~lvrkiGsGSFGdIy~~~~i~~ge~VAiK~Es~~a~hp----qL~yEskvY~iL~~g~GiP~i~~y~~e~~yn   86 (341)
T KOG1163|consen   11 LIVGGKYKLVRKIGSGSFGDIYLGISITSGEEVAIKLESSKAKHP----QLLYESKVYRILQGGVGIPHIRHYGTEKDYN   86 (341)
T ss_pred             heeccceEEEEeecCCchhheeeeeeccCCceEEEEeecccCCCc----chhHHHHHHHHhccCCCCchhhhhccccccc
Confidence            34457788999999999999999986  66778888876544333    46788999999975 5777777888888888


Q ss_pred             EEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceeec
Q psy12580        175 VVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVYI  238 (239)
Q Consensus       175 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~~  238 (239)
                      .+|||.. |.||.+++.-.. +.++..+++..+-|++.-++|+|..+  .|||||||+|+|+++
T Consensus        87 vlVMdLL-GPsLEdLfnfC~-R~ftmkTvLMLaDQml~RiEyvH~r~--fiHRDIKPdNFLMGl  146 (341)
T KOG1163|consen   87 VLVMDLL-GPSLEDLFNFCS-RRFTMKTVLMLADQMLSRIEYVHLRN--FIHRDIKPDNFLMGL  146 (341)
T ss_pred             eeeeecc-CccHHHHHHHHh-hhhhHHhHHHHHHHHHHHHHHHHhhc--cccccCCccceeecc
Confidence            9999999 669999987544 26999999999999999999999999  999999999999875

>KOG0200|consensus

Probab=99.81  E-value=1.5e-19  Score=153.86  Aligned_cols=139  Identities=24%  Similarity=0.389  Sum_probs=118.5

Q ss_pred             ccCCCCCCCcccccccCCCCCCceeeccC---------CCceeeeeeeeccCCchHHHHHHHHHhHhhhc-CCCceeeee
Q psy12580         96 HKGISLNDLSLHTKISSGPNGDTWRGRWQ---------KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIF-SHPNVLPVI  165 (239)
Q Consensus        96 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~~---------~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~l~  165 (239)
                      .+++..+++.+.+.+|+|.||.|++|...         ...++||.++.... ....+.+..|+.+|+.+ .|+||+.++
T Consensus       290 ~~e~~~~~l~~~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~-~~~~~~~~~El~~m~~~g~H~niv~ll  368 (609)
T KOG0200|consen  290 KWEIPRENLKLGKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENAS-SSEKKDLMSELNVLKELGKHPNIVNLL  368 (609)
T ss_pred             ceeechhhccccceeecccccceEeEEEeecccccccceEEEEEEecccccC-cHHHHHHHHHHHHHHHhcCCcchhhhe
Confidence            56677777778889999999999999752         23456677655443 35668899999999998 699999999


Q ss_pred             eeeeCCCceEEEEeeCCCCCHHHHhhcCC--------C------cccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCC
Q psy12580        166 GCVNSPPDLVVISQYMAWGSLYALLHEGA--------G------IVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNS  231 (239)
Q Consensus       166 ~~~~~~~~~~lv~e~~~~gsL~~~l~~~~--------~------~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp  231 (239)
                      |+|...+..++|+||+..|+|.++++...        +      ..++..+...++.||+.||+||++..  +|||||..
T Consensus       369 G~~t~~~~~~~v~Ey~~~G~L~~~Lr~~r~~~~~~~~~~~~~~~~~L~~~dLlsfa~QIa~GMe~L~~~~--~vHRDLAa  446 (609)
T KOG0200|consen  369 GACTQDGPLYVIVEYAEHGDLLEFLRKKRVTESIDGSGVFPNERDALTTKDLLSFAYQIANGMEYLASVP--CVHRDLAA  446 (609)
T ss_pred             eeeccCCceEEEEEeccCCcHHHHHHhccccccccccCCCccccCCcCHHHHHHHHHHHHHHHHHHhhCC--ccchhhhh
Confidence            99999889999999999999999998755        0      13889999999999999999999988  99999999


Q ss_pred             ccceee
Q psy12580        232 RHVMVY  237 (239)
Q Consensus       232 ~Nill~  237 (239)
                      +|||++
T Consensus       447 RNVLi~  452 (609)
T KOG0200|consen  447 RNVLIT  452 (609)
T ss_pred             hhEEec
Confidence            999985

>KOG0671|consensus

Probab=99.80  E-value=1.2e-19  Score=139.31  Aligned_cols=134  Identities=14%  Similarity=0.213  Sum_probs=111.6

Q ss_pred             CCCCCCCcccccccCCCCCCceeeccCC--CceeeeeeeeccCCchHHHHHHHHHhHhhhcC--CC----ceeeeeeeee
Q psy12580         98 GISLNDLSLHTKISSGPNGDTWRGRWQK--NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFS--HP----NVLPVIGCVN  169 (239)
Q Consensus        98 ~~~~~~~~~~~~ig~g~~g~v~~~~~~~--~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~--h~----~iv~l~~~~~  169 (239)
                      +.-...|.+.+.+|+|.||.|..+..+.  ..+++|+++.-   ....+....|+.++.++.  .|    -++++.++|.
T Consensus        85 D~l~~Ry~i~~~lGeGtFGkV~ec~D~~~~~~vAlKIik~V---~kYreAa~iEi~vLqki~~~DP~g~~rcv~m~~wFd  161 (415)
T KOG0671|consen   85 DILTNRYEIVDLLGEGTFGKVVECWDRETKEHVALKIIKNV---DKYREAALIEIEVLQKINESDPNGKFRCVQMRDWFD  161 (415)
T ss_pred             cccccceehhhhhcCCcccceEEEeecCCCceehHHHHHHH---HHHhhHHHHHHHHHHHHHhcCCCCceEEEeeehhhh
Confidence            3335678899999999999999887643  55666776432   233455667999999983  24    3889999999


Q ss_pred             CCCceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        170 SPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       170 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ..++.|||+|.+ |-|++++++.+...+++...++.++.|++++++|||+.+  ++|-||||+|||+-
T Consensus       162 yrghiCivfell-G~S~~dFlk~N~y~~fpi~~ir~m~~QL~~sv~fLh~~k--l~HTDLKPENILfv  226 (415)
T KOG0671|consen  162 YRGHICIVFELL-GLSTFDFLKENNYIPFPIDHIRHMGYQLLESVAFLHDLK--LTHTDLKPENILFV  226 (415)
T ss_pred             ccCceEEEEecc-ChhHHHHhccCCccccchHHHHHHHHHHHHHHHHHHhcc--eeecCCChheEEEe
Confidence            999999999999 459999999988788999999999999999999999999  99999999999974

>PRK14879 serine/threonine protein kinase; Provisional

Probab=99.80  E-value=4e-19  Score=132.74  Aligned_cols=122  Identities=15%  Similarity=0.205  Sum_probs=100.7

Q ss_pred             ccccCCCCCCceeeccCCCceeeeeeeeccCCch------HHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEeeC
Q psy12580        108 TKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPR------VSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYM  181 (239)
Q Consensus       108 ~~ig~g~~g~v~~~~~~~~~~~vk~~~~~~~~~~------~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~  181 (239)
                      +.||+|++|.||+|.+.+..+++|..........      ....+.+|+.++..+.|+++.....++...+..+++|||+
T Consensus         2 ~~l~~G~~~~vy~~~~~~~~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~~   81 (211)
T PRK14879          2 KLIKRGAEAEIYLGDFLGIKAVIKWRIPKRYRHPELDERIRRERTRREARIMSRARKAGVNVPAVYFVDPENFIIVMEYI   81 (211)
T ss_pred             cccccCceEEEEEEeeCCCceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHHHHCCCCCCeEEEEeCCCCEEEEEEe
Confidence            4689999999999999888899887654332211      1235778999999999988877766666667789999999


Q ss_pred             CCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        182 AWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       182 ~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +|++|.+++....     . ....++.+++.+|.++|+.+  ++|+|++|+|||++
T Consensus        82 ~G~~L~~~~~~~~-----~-~~~~i~~~i~~~l~~lH~~~--i~H~Dl~p~Nil~~  129 (211)
T PRK14879         82 EGEPLKDLINSNG-----M-EELELSREIGRLVGKLHSAG--IIHGDLTTSNMILS  129 (211)
T ss_pred             CCcCHHHHHHhcc-----H-HHHHHHHHHHHHHHHHHhCC--cccCCCCcccEEEE
Confidence            9999999987543     2 78899999999999999999  99999999999985

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.80  E-value=7.6e-19  Score=130.43  Aligned_cols=124  Identities=22%  Similarity=0.401  Sum_probs=108.9

Q ss_pred             ccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEeeCCCCCHH
Q psy12580        110 ISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLY  187 (239)
Q Consensus       110 ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~~~gsL~  187 (239)
                      ||+|++|.||++...  +..+++|......... ..+.+.+|+..++.++|++++++++++......++++|++.+++|.
T Consensus         1 l~~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~-~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~~~e~~~~~~l~   79 (215)
T cd00180           1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSS-LLEELLREIEILKKLNHPNIVKLYGVFEDENHLYLVMEYCEGGSLK   79 (215)
T ss_pred             CCcCCceEEEEEEecCCCcEEEEEEeccccchh-HHHHHHHHHHHHHhcCCCCeeeEeeeeecCCeEEEEEecCCCCcHH
Confidence            589999999999986  6778888886543321 3467889999999999999999999999988999999999989999


Q ss_pred             HHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        188 ALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       188 ~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +++.... ..++...+..++.+++++|.+||+.+  ++|+||+|.||+++
T Consensus        80 ~~~~~~~-~~~~~~~~~~~~~~l~~~l~~lh~~~--~~H~dl~~~ni~~~  126 (215)
T cd00180          80 DLLKENE-GKLSEDEILRILLQILEGLEYLHSNG--IIHRDLKPENILLD  126 (215)
T ss_pred             HHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHhCC--eeccCCCHhhEEEe
Confidence            9998752 25899999999999999999999999  99999999999986

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>KOG0614|consensus

Probab=99.80  E-value=6e-21  Score=151.51  Aligned_cols=138  Identities=14%  Similarity=0.155  Sum_probs=121.2

Q ss_pred             ccCCCCCCCcccccccCCCCCCceeeccCCCc--eeeeeeeecc-CCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCC
Q psy12580         96 HKGISLNDLSLHTKISSGPNGDTWRGRWQKND--IVAKILAVRN-CTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP  172 (239)
Q Consensus        96 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~--~~vk~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~  172 (239)
                      ...+..++++....+|-|+||.|-....++..  .+.|++++.. .+.........|-.+|.++..|.||++|..|.+..
T Consensus       414 ~a~v~l~dl~~iaTLGvGgFGRVELV~~~~~~~~fAlKilkK~hIVdtkQqeHv~sEr~Im~~~~s~fIvrLYrTfrd~k  493 (732)
T KOG0614|consen  414 FAQVKLSDLKRIATLGVGGFGRVELVKVNSQKATFALKILKKKHIVDTKQQEHVFSERNIMMECRSDFIVRLYRTFRDSK  493 (732)
T ss_pred             hcccchhhhhhhhhcccCccceEEEEEecccchHHHHHHHhHhhccchhHHHHHHhHHHHHHhcCchHHHHHHHHhccch
Confidence            34556678888899999999999888876655  5668776653 34445566788999999999999999999999999


Q ss_pred             ceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        173 DLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       173 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .+||.||-|-||.|...+++++  .|+..+++.++.-+++|++|||+.|  ||.|||||+|+|+|
T Consensus       494 yvYmLmEaClGGElWTiLrdRg--~Fdd~tarF~~acv~EAfeYLH~k~--iIYRDLKPENllLd  554 (732)
T KOG0614|consen  494 YVYMLMEACLGGELWTILRDRG--SFDDYTARFYVACVLEAFEYLHRKG--IIYRDLKPENLLLD  554 (732)
T ss_pred             hhhhhHHhhcCchhhhhhhhcC--CcccchhhhhHHHHHHHHHHHHhcC--ceeccCChhheeec
Confidence            9999999999999999999988  7999999999999999999999999  99999999999997

>KOG0984|consensus

Probab=99.80  E-value=1.6e-19  Score=128.19  Aligned_cols=139  Identities=14%  Similarity=0.155  Sum_probs=112.1

Q ss_pred             cCCCCCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhc-CCCceeeeeeeeeCCCc
Q psy12580         97 KGISLNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIF-SHPNVLPVIGCVNSPPD  173 (239)
Q Consensus        97 ~~~~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~l~~~~~~~~~  173 (239)
                      .++..+++.....||+|++|.|-+-++  +|.-.++|.+..... .+..++..+|+.+..+. ..|.+|.+||.......
T Consensus        41 ~eV~ad~L~~i~elGrGayG~vekmrh~~sg~imAvKri~~tvn-~q~q~r~L~dldi~~r~~~CPf~V~FyGa~~regd  119 (282)
T KOG0984|consen   41 FEVPADDLVGIEELGRGAYGVVEKMRHIQSGTIMAVKRIRATVN-SQEQKRLLMDLDIIMRTVDCPFTVHFYGALFREGD  119 (282)
T ss_pred             cccchhhhhhhhhhcCCccchhhheeeccCCeEEEEeeehhhcC-hHHHHHHHHhhhhhccCCCCCeEEEeehhhhcccc
Confidence            556677888888999999999866655  556666787766543 44556778888876554 78999999999998889


Q ss_pred             eEEEEeeCCCCCHHHHhhc--CCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceeec
Q psy12580        174 LVVISQYMAWGSLYALLHE--GAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVYI  238 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~--~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~~  238 (239)
                      .|+.||.|.. ||..+-++  ..+..+++..+-+|+..+..||.|||++ ..+||||+||+||||+-
T Consensus       120 vwIcME~M~t-Sldkfy~~v~~~g~~ipE~vlGkIa~Svv~al~~L~~k-L~vIHRDvKPsNiLIn~  184 (282)
T KOG0984|consen  120 VWICMELMDT-SLDKFYRKVLKKGGTIPEDVLGKIAVSVVHALEFLHSK-LSVIHRDVKPSNILINY  184 (282)
T ss_pred             EEEeHHHhhh-hHHHHHHHHHhcCCcCchHHhhHhHHHHHHHHHHHHHH-hhhhhccCCcceEEEcc
Confidence            9999999966 88877664  2223699999999999999999999983 34999999999999973

>KOG0664|consensus

Probab=99.80  E-value=5.7e-21  Score=141.17  Aligned_cols=131  Identities=18%  Similarity=0.292  Sum_probs=106.9

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCC-----ce
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP-----DL  174 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~-----~~  174 (239)
                      .+++....||-|+||.||....  .++.++.|.+..--..-...+.+.+|+.++...+|.|++..++....+.     ++
T Consensus        53 ~Di~PDRPIGYGAFGVVWsVTDPRdgrrvalkK~pnvfq~L~s~krvFre~kmLcfFkHdNVLSaLDILQPph~dfFqEi  132 (449)
T KOG0664|consen   53 QDIQPDRPIGYGAFGVVWSVTDPRSGKRVALKKMPNVFQNLASCKRVFREIKMLSSFRHDNVLSLLDILQPANPSFFQEL  132 (449)
T ss_pred             ccCCCCCcccccceeEEEeccCCCCccchhHhhcchHHHHHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCCchHHHHH
Confidence            5566778899999999998887  3566666666432112223467889999999999999999998876654     67


Q ss_pred             EEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        175 VVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       175 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |.++|.+.. +|...|-...  .++...++-+.+||++||+|||+.+  |.||||||.|+|+.
T Consensus       133 YV~TELmQS-DLHKIIVSPQ--~Ls~DHvKVFlYQILRGLKYLHsA~--ILHRDIKPGNLLVN  190 (449)
T KOG0664|consen  133 YVLTELMQS-DLHKIIVSPQ--ALTPDHVKVFVYQILRGLKYLHTAN--ILHRDIKPGNLLVN  190 (449)
T ss_pred             HHHHHHHHh-hhhheeccCC--CCCcchhhhhHHHHHhhhHHHhhcc--hhhccCCCccEEec
Confidence            899999955 8888887655  6899999999999999999999999  99999999999985

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.80  E-value=9.4e-19  Score=131.58  Aligned_cols=129  Identities=22%  Similarity=0.419  Sum_probs=112.1

Q ss_pred             cccccccCCCCCCceeeccCC--CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEeeCC
Q psy12580        105 SLHTKISSGPNGDTWRGRWQK--NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMA  182 (239)
Q Consensus       105 ~~~~~ig~g~~g~v~~~~~~~--~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~~  182 (239)
                      ...+.+|+|++|.||++...+  ..+++|........ ...+.+..|+..+..++|+|++++++++......++++|+++
T Consensus         2 ~~~~~i~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~-~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~   80 (225)
T smart00221        2 ELGKKLGEGAFGKVYLARDKGTGELVAVKVLKKEKTE-KQREEFLREIRILKKLKHPNIVKLYGVFEDPEPLYLVMEYCE   80 (225)
T ss_pred             ceeeEeecCCCeEEEEEEEcCCCcEEEEEeeccccch-HHHHHHHHHHHHHHhCCCCChhhheeeeecCCceEEEEeccC
Confidence            456789999999999998854  66777887654332 245678889999999999999999999998899999999999


Q ss_pred             CCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        183 WGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       183 ~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +++|.+++..... .+++..+..++.+++.++.|||+.+  ++|+||+|+||+++
T Consensus        81 ~~~L~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~lh~~~--i~h~di~~~ni~v~  132 (225)
T smart00221       81 GGDLFDYLRKKGG-KLSEEEARFYLRQILEALEYLHSLG--IVHRDLKPENILLG  132 (225)
T ss_pred             CCCHHHHHHhccc-CCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCCHHHEEEc
Confidence            9999999987652 1789999999999999999999999  99999999999987

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>KOG1006|consensus

Probab=99.79  E-value=1.8e-20  Score=137.73  Aligned_cols=138  Identities=14%  Similarity=0.151  Sum_probs=109.9

Q ss_pred             ccCCCCCCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhh-cCCCceeeeeeeeeCCC
Q psy12580         96 HKGISLNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRI-FSHPNVLPVIGCVNSPP  172 (239)
Q Consensus        96 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~-l~h~~iv~l~~~~~~~~  172 (239)
                      ......++++-...||.|+||.|++...+  +...+||.+..... ..+.+++..|.....+ -+.||||++||++...+
T Consensus        58 ~~~F~~~~Lqdlg~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n~-~keq~rll~e~d~~mks~~cp~IVkfyGa~F~EG  136 (361)
T KOG1006|consen   58 LHTFTSDNLQDLGEIGNGAFGTVNKMLHKPSGKLMAVKRIRSNNI-EKEQKRLLMEHDTVMKSSNCPNIVKFYGALFSEG  136 (361)
T ss_pred             ccccccchHHHHHHhcCCcchhhhhhhcCccCcEEEEEEeeeccc-hHHHHHHHHHHHHHHhhcCCcHHHHHhhhhhcCC
Confidence            34455677778888999999999999884  45667787765543 4455778888876544 57899999999999999


Q ss_pred             ceEEEEeeCCCCCHHHHhhc---CCCcccCHHHHHHHHHHHHHHhhhhhc-CCCCcccCCCCCccceee
Q psy12580        173 DLVVISQYMAWGSLYALLHE---GAGIVVDFAQALRFAVDVARGMAFLHS-LERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       173 ~~~lv~e~~~~gsL~~~l~~---~~~~~~~~~~~~~~~~~i~~~l~~lH~-~~~~ivHrdikp~Nill~  237 (239)
                      ..||-||+|.- ||..+.+.   -....+++.-+-.|..-+..||+||-+ ..  |||||+||+|||+|
T Consensus       137 dcWiCMELMd~-SlDklYk~vy~vq~~~ipE~Ilg~ItvatV~AL~yLK~~lk--iIHRDvKPSNILld  202 (361)
T KOG1006|consen  137 DCWICMELMDI-SLDKLYKRVYSVQKSRIPENILGHITVATVDALDYLKEELK--IIHRDVKPSNILLD  202 (361)
T ss_pred             ceeeeHHHHhh-hHHHHHHHHHHHHhccCcHhhhhheeeeehhHHHHHHHHhh--hhhccCChhheEEe
Confidence            99999999965 87666542   222368999999999999999999976 55  99999999999997

>KOG0983|consensus

Probab=99.79  E-value=7.2e-20  Score=135.22  Aligned_cols=135  Identities=13%  Similarity=0.216  Sum_probs=111.4

Q ss_pred             CCCCCCCcccccccCCCCCCceeeccCC--CceeeeeeeeccCCchHHHHHHHHHhHhhhcC-CCceeeeeeeeeCCCce
Q psy12580         98 GISLNDLSLHTKISSGPNGDTWRGRWQK--NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFS-HPNVLPVIGCVNSPPDL  174 (239)
Q Consensus        98 ~~~~~~~~~~~~ig~g~~g~v~~~~~~~--~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~-h~~iv~l~~~~~~~~~~  174 (239)
                      ..+.++++....+|+|+.|.||+++++.  .-.+||.+... ...++.++++..+.++.... .|.||+.+|+|..+..+
T Consensus        88 ~~dindl~~l~dlGsGtcG~V~k~~~rs~~~iiAVK~M~rt-~Nkee~kRILmDldvv~~s~dcpyIV~c~GyFi~n~dV  166 (391)
T KOG0983|consen   88 QADINDLENLGDLGSGTCGQVWKMRFRSTGHIIAVKQMRRT-GNKEENKRILMDLDVVLKSHDCPYIVQCFGYFITNTDV  166 (391)
T ss_pred             ccChHHhhhHHhhcCCCccceEEEEEcccceEEEEEeeccc-CCHHHHHHHHHhhhHHhhccCCCeeeeeeeEEeeCchH
Confidence            3455777888889999999999999865  55566777544 34556678888898888774 89999999999999999


Q ss_pred             EEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhc-CCCCcccCCCCCccceee
Q psy12580        175 VVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS-LERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       175 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~-~~~~ivHrdikp~Nill~  237 (239)
                      ++.||.|.. .+..++++-. .++|+.-+-++...+++||.||-+ ++  |||||+||+|||+|
T Consensus       167 ~IcMelMs~-C~ekLlkrik-~piPE~ilGk~tva~v~AL~YLKeKH~--viHRDvKPSNILlD  226 (391)
T KOG0983|consen  167 FICMELMST-CAEKLLKRIK-GPIPERILGKMTVAIVKALYYLKEKHG--VIHRDVKPSNILLD  226 (391)
T ss_pred             HHHHHHHHH-HHHHHHHHhc-CCchHHhhhhhHHHHHHHHHHHHHhcc--eeecccCccceEEc
Confidence            999999955 5566666543 369999999999999999999987 56  99999999999997

>KOG0696|consensus

Probab=99.79  E-value=3.3e-20  Score=144.25  Aligned_cols=139  Identities=19%  Similarity=0.204  Sum_probs=117.0

Q ss_pred             ccCCCCCCCcccccccCCCCCCceeeccCC--CceeeeeeeeccCCch-HHHHHHHHHhHhhhc-CCCceeeeeeeeeCC
Q psy12580         96 HKGISLNDLSLHTKISSGPNGDTWRGRWQK--NDIVAKILAVRNCTPR-VSRDFNEEFPKLRIF-SHPNVLPVIGCVNSP  171 (239)
Q Consensus        96 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~--~~~~vk~~~~~~~~~~-~~~~~~~e~~~l~~l-~h~~iv~l~~~~~~~  171 (239)
                      ...+...+++...+||+|+||+|..+..++  ..+++|++++....+. ..+.-..|-++|... +-|.++++..++.+.
T Consensus       343 ~d~i~~tDFnFl~VlGKGSFGKVlLaerkgtdELyAiKiLkKDViiQdDDvectm~EKrvLAL~~kppFL~qlHScFQTm  422 (683)
T KOG0696|consen  343 RDRIKATDFNFLMVLGKGSFGKVLLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLVQLHSCFQTM  422 (683)
T ss_pred             ccceeecccceEEEeccCccceeeeecccCcchhhhhhhhccceeeecCcccceehhhhheecCCCCchHHHHHHHhhhh
Confidence            335667889999999999999999999866  4567788876543222 223345677777776 457899999999999


Q ss_pred             CceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceeec
Q psy12580        172 PDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVYI  238 (239)
Q Consensus       172 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~~  238 (239)
                      +++|+||||+.||+|.-.++.-+  .+.++.+..++.+|+-||-|||++|  ||.||||..|||||.
T Consensus       423 DRLyFVMEyvnGGDLMyhiQQ~G--kFKEp~AvFYAaEiaigLFFLh~kg--IiYRDLKLDNvmLd~  485 (683)
T KOG0696|consen  423 DRLYFVMEYVNGGDLMYHIQQVG--KFKEPVAVFYAAEIAIGLFFLHSKG--IIYRDLKLDNVMLDS  485 (683)
T ss_pred             hheeeEEEEecCchhhhHHHHhc--ccCCchhhhhhHHHHHHhhhhhcCC--eeeeeccccceEecc
Confidence            99999999999999999898877  6899999999999999999999999  999999999999984

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=99.79  E-value=6.7e-19  Score=130.36  Aligned_cols=118  Identities=16%  Similarity=0.176  Sum_probs=93.5

Q ss_pred             cccCCCCCCceeeccCCCceeeeeeeeccCCch------HHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEeeCC
Q psy12580        109 KISSGPNGDTWRGRWQKNDIVAKILAVRNCTPR------VSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMA  182 (239)
Q Consensus       109 ~ig~g~~g~v~~~~~~~~~~~vk~~~~~~~~~~------~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~~  182 (239)
                      .||+|++|.||+|.+.+..+++|..........      ...++.+|+.++..+.++++.....++...+..++||||++
T Consensus         1 ~ig~G~~~~vy~~~~~~~~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~~~   80 (199)
T TIGR03724         1 LIAKGAEAIIYLGDFLGLKAVIKERVPKSYRHPELDERIRRERTRNEARLLSRARKAGVNTPVVYDVDPDNKTIVMEYIE   80 (199)
T ss_pred             CCCCCceEEEEEeecCCccEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEEEC
Confidence            379999999999999888999988654322111      12557789999999988765444444445566799999999


Q ss_pred             CCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        183 WGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       183 ~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |++|.+++....  .       .++.|++.+|.+||+.+  ++|+|++|+||+++
T Consensus        81 g~~l~~~~~~~~--~-------~~~~~i~~~l~~lH~~g--i~H~Dl~~~Nil~~  124 (199)
T TIGR03724        81 GKPLKDVIEEGN--D-------ELLREIGRLVGKLHKAG--IVHGDLTTSNIIVR  124 (199)
T ss_pred             CccHHHHHhhcH--H-------HHHHHHHHHHHHHHHCC--eecCCCCcceEEEE
Confidence            999998876532  1       88999999999999999  99999999999985

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=99.78  E-value=1.2e-18  Score=146.96  Aligned_cols=121  Identities=17%  Similarity=0.155  Sum_probs=99.2

Q ss_pred             cccccccCCCCCCceeeccCCCceeeeeeeeccCCc------hHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEE
Q psy12580        105 SLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTP------RVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVIS  178 (239)
Q Consensus       105 ~~~~~ig~g~~g~v~~~~~~~~~~~vk~~~~~~~~~------~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~  178 (239)
                      ...+.||+|+||.||++.+.+..+++|+........      .....+.+|+.++..++|++++....++......++||
T Consensus       336 ~~~~~iG~G~~g~Vy~~~~~~~~~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~  415 (535)
T PRK09605        336 IPDHLIGKGAEADIKKGEYLGRDAVIKERVPKGYRHPELDERLRTERTRAEARLLSEARRAGVPTPVIYDVDPEEKTIVM  415 (535)
T ss_pred             CccceeccCCcEEEEEEeecCccceeEEEecccccchhHHHHHHHHHHHHHHHHHHhhcccCCCeeEEEEEeCCCCEEEE
Confidence            446789999999999999987777776543322111      12356789999999999999988777777777789999


Q ss_pred             eeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        179 QYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       179 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||+++++|.+++.          ....++.|++.+|.|||+.+  ++||||||+|||++
T Consensus       416 E~~~g~~L~~~l~----------~~~~~~~~i~~~L~~lH~~g--iiHrDlkp~NILl~  462 (535)
T PRK09605        416 EYIGGKDLKDVLE----------GNPELVRKVGEIVAKLHKAG--IVHGDLTTSNFIVR  462 (535)
T ss_pred             EecCCCcHHHHHH----------HHHHHHHHHHHHHHHHHhCC--CccCCCChHHEEEE
Confidence            9999999998875          35678999999999999999  99999999999984

>KOG0695|consensus

Probab=99.78  E-value=1.7e-19  Score=137.03  Aligned_cols=138  Identities=16%  Similarity=0.222  Sum_probs=118.5

Q ss_pred             cCCCCCCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCC-chHHHHHHHHHhHhhhc-CCCceeeeeeeeeCCC
Q psy12580         97 KGISLNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCT-PRVSRDFNEEFPKLRIF-SHPNVLPVIGCVNSPP  172 (239)
Q Consensus        97 ~~~~~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~-~~~~~~~~~e~~~l~~l-~h~~iv~l~~~~~~~~  172 (239)
                      +.+...++.+..+||+|+|++|..++..  ++-+++|++++.-.. .+..+....|..+..+. +||.+|-+..+|.+..
T Consensus       245 ~~l~l~df~ll~vigrgsyakvl~~~~~~t~qiyamkvvkkel~nddedidwvqtek~vfe~asn~pflvglhscfqtes  324 (593)
T KOG0695|consen  245 QGLGLQDFDLLRVIGRGSYAKVLLVRLKKTDQIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNNPFLVGLHSCFQTES  324 (593)
T ss_pred             cccccccceeeeeecCcchhhhhheehcccceeeehhhHHHHhcCCcccchhHHhhHHHHHhccCCCeEEehhhhhcccc
Confidence            3456688999999999999999998874  355677888765333 33346677788888876 6899999999999999


Q ss_pred             ceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceeec
Q psy12580        173 DLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVYI  238 (239)
Q Consensus       173 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~~  238 (239)
                      ++++|.||.+||+|.-.++++.  .+|++.++.+..+|+.||.|||++|  ||.||||..|+|||.
T Consensus       325 rlffvieyv~ggdlmfhmqrqr--klpeeharfys~ei~lal~flh~rg--iiyrdlkldnvllda  386 (593)
T KOG0695|consen  325 RLFFVIEYVNGGDLMFHMQRQR--KLPEEHARFYSAEICLALNFLHERG--IIYRDLKLDNVLLDA  386 (593)
T ss_pred             eEEEEEEEecCcceeeehhhhh--cCcHHHhhhhhHHHHHHHHHHhhcC--eeeeeccccceEEcc
Confidence            9999999999999988888776  7999999999999999999999999  999999999999984

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=99.78  E-value=5.4e-19  Score=149.12  Aligned_cols=133  Identities=12%  Similarity=0.118  Sum_probs=90.8

Q ss_pred             cCCCCCCCcccccccCCCCCCceeeccC------CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeee---
Q psy12580         97 KGISLNDLSLHTKISSGPNGDTWRGRWQ------KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGC---  167 (239)
Q Consensus        97 ~~~~~~~~~~~~~ig~g~~g~v~~~~~~------~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~---  167 (239)
                      .....++|.+.+.||+|+||.||+|.+.      +..+++|.+......    +....+  .+....+.++..+...   
T Consensus       127 ~~~~~~~y~l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~~~~~----e~~~~e--~l~~~~~~~~~~~~~~~~~  200 (566)
T PLN03225        127 PSFKKDDFVLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATEYGAV----EIWMNE--RVRRACPNSCADFVYGFLE  200 (566)
T ss_pred             CCCccCCeEEeEEEeeCCCeEEEEEEEcCCccccCcEEEEEEecccchh----HHHHHH--HHHhhchhhHHHHHHhhhc
Confidence            3446688999999999999999999874      456777776432111    111111  1111122222222211   


Q ss_pred             ---eeCCCceEEEEeeCCCCCHHHHhhcCCCc------------------ccCHHHHHHHHHHHHHHhhhhhcCCCCccc
Q psy12580        168 ---VNSPPDLVVISQYMAWGSLYALLHEGAGI------------------VVDFAQALRFAVDVARGMAFLHSLERIIPQ  226 (239)
Q Consensus       168 ---~~~~~~~~lv~e~~~~gsL~~~l~~~~~~------------------~~~~~~~~~~~~~i~~~l~~lH~~~~~ivH  226 (239)
                         .......++|+||+++++|.+++......                  ......+..++.|++.||+|||+.+  |+|
T Consensus       201 ~~~~~~~~~~~LV~ey~~~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~qll~aL~yLH~~g--IiH  278 (566)
T PLN03225        201 PVSSKKEDEYWLVWRYEGESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFALDGLHSTG--IVH  278 (566)
T ss_pred             ccccccCCceEEEEEecCCCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHHHHHHHHHHHHCC--EEe
Confidence               23455899999999999999998754310                  1123456789999999999999999  999


Q ss_pred             CCCCCccceee
Q psy12580        227 YQLNSRHVMVY  237 (239)
Q Consensus       227 rdikp~Nill~  237 (239)
                      |||||+|||++
T Consensus       279 RDLKP~NILl~  289 (566)
T PLN03225        279 RDVKPQNIIFS  289 (566)
T ss_pred             CcCCHHHEEEe
Confidence            99999999996

>KOG0512|consensus

Probab=99.78  E-value=3.1e-19  Score=122.32  Aligned_cols=89  Identities=29%  Similarity=0.400  Sum_probs=83.8

Q ss_pred             CccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCccc
Q psy12580          4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWLG   83 (239)
Q Consensus         4 v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l~   83 (239)
                      ||.+|++|+||||.|+.+|+.+||+.|+..||+++++.+.||||||.||...+.+++.+| ++.|+|++.......||++
T Consensus        90 vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~va~~L-LqhgaDVnA~t~g~ltpLh  168 (228)
T KOG0512|consen   90 VNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEVAGRL-LQHGADVNAQTKGLLTPLH  168 (228)
T ss_pred             ccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchhHHHHH-HhccCcccccccccchhhH
Confidence            799999999999999999999999999999999999999999999999999999999999 5699999999999999999


Q ss_pred             cccccCcccc
Q psy12580         84 LKTRSRDATL   93 (239)
Q Consensus        84 ~a~~~~~~~~   93 (239)
                      .+...++...
T Consensus       169 laa~~rn~r~  178 (228)
T KOG0512|consen  169 LAAGNRNSRD  178 (228)
T ss_pred             HhhcccchHH
Confidence            9888776543

>KOG1164|consensus

Probab=99.78  E-value=1.7e-18  Score=137.28  Aligned_cols=131  Identities=14%  Similarity=0.086  Sum_probs=106.6

Q ss_pred             CCcccccccCCCCCCceeeccCCC---ceeeeeeeeccCCchHHHHHHHHHhHhhhcC----CCceeeeeeee-eCCCce
Q psy12580        103 DLSLHTKISSGPNGDTWRGRWQKN---DIVAKILAVRNCTPRVSRDFNEEFPKLRIFS----HPNVLPVIGCV-NSPPDL  174 (239)
Q Consensus       103 ~~~~~~~ig~g~~g~v~~~~~~~~---~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~----h~~iv~l~~~~-~~~~~~  174 (239)
                      .|.+...||+|+||.||.+.....   .+|+|+.........  ..+..|..++..+.    .+++..+++.. ......
T Consensus        19 ~~~i~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~~~~~~~--~~l~~E~~vl~~l~~~~~~~~~~~~~~~G~~~~~~~   96 (322)
T KOG1164|consen   19 RYKLGKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKKELGSKP--SVLKIEIQVLKKLEKKNGPSHFPKLLDHGRSTEDFN   96 (322)
T ss_pred             ceEEeeeccccCCceEEEEEecCCCCeeEEEEEEEecccCCC--ccchhHHHHHHHHhhhcCCCCCCEEEEeccCCCcee
Confidence            688999999999999999987543   455666654322211  14667888888776    25889999888 477789


Q ss_pred             EEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceeec
Q psy12580        175 VVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVYI  238 (239)
Q Consensus       175 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~~  238 (239)
                      ++||+.+ |.||.++.+..+...++..++.+++.|++.+|++||+.|  ++||||||+|++++.
T Consensus        97 ~iVM~l~-G~sL~dl~~~~~~~~fs~~T~l~ia~q~l~~l~~lH~~G--~iHRDiKp~N~~~g~  157 (322)
T KOG1164|consen   97 FIVMSLL-GPSLEDLRKRNPPGRFSRKTVLRIAIQNLNALEDLHSKG--FIHRDIKPENFVVGQ  157 (322)
T ss_pred             EEEEecc-CccHHHHHHhCCCCCcCHhHHHHHHHHHHHHHHHHHhcC--cccCCcCHHHeeecC
Confidence            9999999 569999887666567999999999999999999999999  999999999999863

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.77  E-value=2.1e-18  Score=127.89  Aligned_cols=125  Identities=6%  Similarity=0.015  Sum_probs=100.1

Q ss_pred             CCCCcccccccCCCCCCceeeccCCCceeeeeeeeccCCchH-HHH------HHHHHhHhhhcCCCceeeeeeeeeCC--
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRV-SRD------FNEEFPKLRIFSHPNVLPVIGCVNSP--  171 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~~vk~~~~~~~~~~~-~~~------~~~e~~~l~~l~h~~iv~l~~~~~~~--  171 (239)
                      ...|...+.+|+|+||.||.....++.+++|++.......+. ...      +.+|+..+.++.||+|.....++...  
T Consensus        30 ~~~y~~~~~l~~~~f~~v~l~~~~~~~~iiKvf~~~~~~~~~~~~~f~~g~~~e~Ea~~l~rL~~~GI~~~~d~~~~~~~  109 (232)
T PRK10359         30 SYNIKTIKVFRNIDDTKVSLIDTDYGKYILKVFAPKVKRTERFLKSFVKGDYYENLIVQTDRVRSEGLASLNDFYLLAER  109 (232)
T ss_pred             hCceEEEEEecCCCceEEEEEecCCCcEEEEEechhcCchHHHHHhhhhhHHHHHHHHHHHHHHHCCCCcceEeeeeccc
Confidence            367888999999999999998777788999999765433322 122      57899999999999998888775432  


Q ss_pred             ------CceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        172 ------PDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       172 ------~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                            +..+|+|||++|.+|.++..      +++    ....+++.+|..+|+.|  ++|||+||+||+++
T Consensus       110 ~~~~~~~~~~lvmEyi~G~tL~~~~~------~~~----~~~~~i~~~l~~lH~~g--i~H~Dikp~Nili~  169 (232)
T PRK10359        110 KTLRYAHTYIMLIEYIEGVELNDMPE------ISE----DVKAKIKASIESLHQHG--MVSGDPHKGNFIVS  169 (232)
T ss_pred             ccccccCCeEEEEEEECCccHHHhhh------ccH----HHHHHHHHHHHHHHHcC--CccCCCChHHEEEe
Confidence                  35899999999999988732      333    24569999999999999  99999999999986

>KOG0603|consensus

Probab=99.76  E-value=1.5e-18  Score=141.34  Aligned_cols=126  Identities=13%  Similarity=0.253  Sum_probs=105.0

Q ss_pred             CCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhc-CCCceeeeeeeeeCCCceEEE
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIF-SHPNVLPVIGCVNSPPDLVVI  177 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~l~~~~~~~~~~~lv  177 (239)
                      .++|.+...+|.|+|+.|-.+..  .+...++|++..+...      ..+|..++... +||||+++.+.+..+.+.|+|
T Consensus       321 ~~~y~~~~~~~~gs~s~~~~~~~~~t~~~~~vkii~~~~~~------~~~e~~~~~~~~~h~niv~~~~v~~~~~~~~~v  394 (612)
T KOG0603|consen  321 TESYEFREELGEGSFSAVKYCESSPTDQEPAVKIISKRADD------NQDEIPISLLVRDHPNIVKSHDVYEDGKEIYLV  394 (612)
T ss_pred             chhhccccccCCCCccceeeeeccccccchhheeccccccc------cccccchhhhhcCCCcceeecceecCCceeeee
Confidence            56788888899999999988876  4567788888765222      23566555555 799999999999999999999


Q ss_pred             EeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        178 SQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       178 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||.+.++-+.+.+...+  .+. ..+..|+.+|+.|++|||++|  +|||||||+|||++
T Consensus       395 ~e~l~g~ell~ri~~~~--~~~-~e~~~w~~~lv~Av~~LH~~g--vvhRDLkp~NIL~~  449 (612)
T KOG0603|consen  395 MELLDGGELLRRIRSKP--EFC-SEASQWAAELVSAVDYLHEQG--VVHRDLKPGNILLD  449 (612)
T ss_pred             ehhccccHHHHHHHhcc--hhH-HHHHHHHHHHHHHHHHHHhcC--eeecCCChhheeec
Confidence            99999998888887765  233 788899999999999999999  99999999999994

>KOG1165|consensus

Probab=99.76  E-value=3.8e-18  Score=129.37  Aligned_cols=131  Identities=11%  Similarity=0.169  Sum_probs=111.2

Q ss_pred             CCCCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhc-CCCceeeeeeeeeCCCceE
Q psy12580         99 ISLNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIF-SHPNVLPVIGCVNSPPDLV  175 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~l~~~~~~~~~~~  175 (239)
                      +-..+|.+.++||+|+||.++.|..  ++.+|++|.-..+...+    .+..|.+.++.+ ..+.|.+.|-+...+.+-.
T Consensus        25 ~VG~hyrVGkKIGeGsFG~lf~G~Nl~nne~VAIKfEPrkS~AP----QLrdEYr~YKlL~g~~GIP~vYYFGqeG~~Ni  100 (449)
T KOG1165|consen   25 MVGPHYRVGKKIGEGSFGVLFLGKNLYNNEPVAIKFEPRKSEAP----QLRDEYRTYKLLGGTEGIPQVYYFGQEGKYNI  100 (449)
T ss_pred             EecccceeccccccCcceeeecccccccCceEEEEeccccCCcc----hHHHHHHHHHHHcCCCCCCceeeeccccchhh
Confidence            3456789999999999999999985  88899998876554333    466777788877 4689999888888888889


Q ss_pred             EEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        176 VISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       176 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||+|++ |.||.++..-.+ +.|+.+++..++.|++.-++|+|+..  +|.|||||+|+||+
T Consensus       101 LVidLL-GPSLEDLFD~Cg-R~FSvKTV~miA~Qmi~rie~vH~k~--LIYRDIKPdNFLIG  158 (449)
T KOG1165|consen  101 LVIDLL-GPSLEDLFDLCG-RRFSVKTVAMIAKQMITRIEYVHEKD--LIYRDIKPDNFLIG  158 (449)
T ss_pred             hhhhhh-CcCHHHHHHHhc-CcccHHhHHHHHHHHHHHHHHHHhcc--eeecccCccceeec
Confidence            999999 569999987544 36999999999999999999999999  99999999999986

>KOG1167|consensus

Probab=99.76  E-value=2.2e-18  Score=133.88  Aligned_cols=125  Identities=14%  Similarity=0.271  Sum_probs=107.0

Q ss_pred             CCCcccccccCCCCCCceeeccC-----CCceeeeeeeeccCCchHHHHHHHHHhHhhhc-CCCceeeeeeeeeCCCceE
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRWQ-----KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIF-SHPNVLPVIGCVNSPPDLV  175 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~~-----~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~l~~~~~~~~~~~  175 (239)
                      ..|...++||.|.|+.||++...     +..+++|.+.....    ..+..+|+++|..+ .+.||+++.+++..++...
T Consensus        36 ~~~~~v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~ts~----p~ri~~El~~L~~~gG~~ni~~~~~~~rnnd~v~  111 (418)
T KOG1167|consen   36 NAYKVVNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRTSS----PSRILNELEMLYRLGGSDNIIKLNGCFRNNDQVA  111 (418)
T ss_pred             hhhhhhccccccchhhhhhhhHhhhccccceEeeeecccccC----chHHHHHHHHHHHhccchhhhcchhhhccCCeeE
Confidence            56778899999999999999762     34566677754322    25688999999998 5889999999999999999


Q ss_pred             EEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        176 VISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       176 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +|+||+++.+-.++...     ++...+..+++.++.||.++|..|  ||||||||+|+|..
T Consensus       112 ivlp~~~H~~f~~l~~~-----l~~~~i~~Yl~~ll~Al~~~h~~G--IvHRDiKpsNFL~n  166 (418)
T KOG1167|consen  112 IVLPYFEHDRFRDLYRS-----LSLAEIRWYLRNLLKALAHLHKNG--IVHRDIKPSNFLYN  166 (418)
T ss_pred             EEecccCccCHHHHHhc-----CCHHHHHHHHHHHHHHhhhhhccC--ccccCCCccccccc
Confidence            99999999888887765     678899999999999999999999  99999999999864

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=99.75  E-value=5.5e-18  Score=128.69  Aligned_cols=119  Identities=18%  Similarity=0.325  Sum_probs=103.9

Q ss_pred             CCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEeeCCCCCHHHHhh
Q psy12580        114 PNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLH  191 (239)
Q Consensus       114 ~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~  191 (239)
                      +||.||+|.+.  +..+++|+......... .+.+.+|+..++.++|++++++++++......++++||+++++|.+++.
T Consensus         1 ~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~-~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~~~   79 (244)
T smart00220        1 SFGKVYLARDKKTGKLVAIKVIKKEKIKKK-RERILREISILKKLKHPNIVRLYDVFEDEDKLYLVMEYCDGGDLFDLLK   79 (244)
T ss_pred             CceEEEEEEECCCCcEEEEEEecccccccH-HHHHHHHHHHHHhCCCCcHHHHHhheeeCCEEEEEEeCCCCCCHHHHHH
Confidence            47889999884  46777888765433221 5778899999999999999999999998889999999999999999998


Q ss_pred             cCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        192 EGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ...  .+++..+..++.+++.++.|||+.+  ++|+||+|+||+++
T Consensus        80 ~~~--~~~~~~~~~~~~~l~~~l~~lh~~~--i~h~~i~~~ni~~~  121 (244)
T smart00220       80 KRG--RLSEDEARFYARQILSALEYLHSNG--IIHRDLKPENILLD  121 (244)
T ss_pred             hcc--CCCHHHHHHHHHHHHHHHHHHHHcC--eecCCcCHHHeEEC
Confidence            765  3899999999999999999999999  99999999999986

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>smart00090 RIO RIO-like kinase

Probab=99.75  E-value=5e-18  Score=128.25  Aligned_cols=128  Identities=16%  Similarity=0.107  Sum_probs=95.4

Q ss_pred             CCcccccccCCCCCCceeec---cCCCceeeeeeeeccCCc--------------------h--HHHHHHHHHhHhhhcC
Q psy12580        103 DLSLHTKISSGPNGDTWRGR---WQKNDIVAKILAVRNCTP--------------------R--VSRDFNEEFPKLRIFS  157 (239)
Q Consensus       103 ~~~~~~~ig~g~~g~v~~~~---~~~~~~~vk~~~~~~~~~--------------------~--~~~~~~~e~~~l~~l~  157 (239)
                      .|.+.+.||+|++|.||+|.   ..+..+++|+........                    .  ....+..|...+.++.
T Consensus        29 ~~~i~~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~L~~L~  108 (237)
T smart00090       29 LSAIGGCISTGKEANVYHALDFDGSGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAEKEFRNLQRLY  108 (237)
T ss_pred             hHHhCCeeccCcceeEEEEEecCCCCcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            46778899999999999997   367888889886542110                    0  1123567999999986


Q ss_pred             C--CceeeeeeeeeCCCceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccce
Q psy12580        158 H--PNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVM  235 (239)
Q Consensus       158 h--~~iv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nil  235 (239)
                      +  ..+.+.+++    ...++||||+++++|..+.....  .+....+..++.|++.+|.+||+.| .|+||||||+||+
T Consensus       109 ~~~i~~p~~~~~----~~~~lV~E~~~g~~L~~~~~~~~--~~~~~~~~~i~~qi~~~l~~LH~~g-~iiH~Dikp~NIl  181 (237)
T smart00090      109 EAGVPVPKPIAW----RRNVLVMEFIGGDGLPAPRLKDV--EPEEEEEFELYDDILEEMRKLYKEG-ELVHGDLSEYNIL  181 (237)
T ss_pred             hcCCCCCeeeEe----cCceEEEEEecCCcccccccccC--CcchHHHHHHHHHHHHHHHHHHhcC-CEEeCCCChhhEE
Confidence            5  334455543    23589999999988876653333  4566778899999999999999976 4899999999999


Q ss_pred             ee
Q psy12580        236 VY  237 (239)
Q Consensus       236 l~  237 (239)
                      ++
T Consensus       182 i~  183 (237)
T smart00090      182 VH  183 (237)
T ss_pred             EE
Confidence            85

>KOG0509|consensus

Probab=99.74  E-value=2.1e-18  Score=139.81  Aligned_cols=111  Identities=30%  Similarity=0.367  Sum_probs=89.1

Q ss_pred             CcCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccC-CCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCC
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATN-RGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQS   80 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~-~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t   80 (239)
                      +++|..|.+|.|+|||||.+++.+++++|+++||++|..+ ..+-||||||+.+|+..+|.+| .+.|+|++..|.+|.+
T Consensus        69 ~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lL-lqhGAdpt~~D~~G~~  147 (600)
T KOG0509|consen   69 ESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHISVVDLL-LQHGADPTLKDKQGLT  147 (600)
T ss_pred             cCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHH-HHcCCCCceecCCCCc
Confidence            5788888888899999999999999999998888888888 7888899999988888888888 4688888888888888


Q ss_pred             ccccccccCccccccccCCCCCCCcccccccCC
Q psy12580         81 WLGLKTRSRDATLSRHKGISLNDLSLHTKISSG  113 (239)
Q Consensus        81 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ig~g  113 (239)
                      ++++|.+.++..+.-+.-....+.+..+.-|++
T Consensus       148 ~lHla~~~~~~~~vayll~~~~d~d~~D~~grT  180 (600)
T KOG0509|consen  148 PLHLAAQFGHTALVAYLLSKGADIDLRDNNGRT  180 (600)
T ss_pred             HHHHHHHhCchHHHHHHHHhcccCCCcCCCCCC
Confidence            888888888776665544444555555555554

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.74  E-value=2.7e-17  Score=119.68  Aligned_cols=117  Identities=16%  Similarity=0.125  Sum_probs=89.8

Q ss_pred             ccccccCCCCCCceeeccCCCceeeeeeeeccCCch--HHHHHHHHHhHhhhcC-CCceeeeeeeeeCCCceEEEEeeCC
Q psy12580        106 LHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPR--VSRDFNEEFPKLRIFS-HPNVLPVIGCVNSPPDLVVISQYMA  182 (239)
Q Consensus       106 ~~~~ig~g~~g~v~~~~~~~~~~~vk~~~~~~~~~~--~~~~~~~e~~~l~~l~-h~~iv~l~~~~~~~~~~~lv~e~~~  182 (239)
                      ....+++|+||.|+.+...+.+++.+.+........  ....+.+|+.+|+++. ++++++++++    +..+++|||+.
T Consensus         6 ~~~~l~~~~f~~v~~~~~~~~k~~~~~l~~~~~~~~~~~~~l~~rE~~iL~~L~~~~~vP~ll~~----~~~~lvmeyI~   81 (218)
T PRK12274          6 VNEPLKSDTFGRILLVRGGERKFVRRDLSAAPWWLRGVAWWLARREALALRQLDGLPRTPRLLHW----DGRHLDRSYLA   81 (218)
T ss_pred             cceeecCCCcceEEEeecCCceeeecccccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEE----cCEEEEEeeec
Confidence            456799999999998777677777666654333211  1235788999999995 4789999886    34799999999


Q ss_pred             CCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCC-CCccceee
Q psy12580        183 WGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQL-NSRHVMVY  237 (239)
Q Consensus       183 ~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdi-kp~Nill~  237 (239)
                      |.+|.+.+..         ....++.|++.+|+++|+.|  |+|||| ||+|||++
T Consensus        82 G~~L~~~~~~---------~~~~~~~qi~~~L~~lH~~G--IvHrDL~kp~NILv~  126 (218)
T PRK12274         82 GAAMYQRPPR---------GDLAYFRAARRLLQQLHRCG--VAHNDLAKEANWLVQ  126 (218)
T ss_pred             CccHHhhhhh---------hhHHHHHHHHHHHHHHHHCc--CccCCCCCcceEEEc
Confidence            9898754321         11357789999999999999  999999 79999986

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.73  E-value=5.5e-18  Score=121.41  Aligned_cols=95  Identities=24%  Similarity=0.323  Sum_probs=83.6

Q ss_pred             cCccCCCCCchHHHHHHHhCCHHH---HHHHHHCCCCCCccC-CCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCC
Q psy12580          3 YVSVTDDHGFSPLHWACKEGHLKL---VELLLQRGARVNATN-RGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKD   78 (239)
Q Consensus         3 ~v~~~~~~g~tpl~~a~~~~~~~~---~~~ll~~g~~~~~~~-~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~   78 (239)
                      ++|.+|.+|+||||+|+..|+.+.   +++|++.|+++|.+| ..|.||||+|+..|+.+++++|+.+.+++++..+..|
T Consensus        49 ~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g  128 (166)
T PHA02743         49 LLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQH  128 (166)
T ss_pred             hhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCC
Confidence            467789999999999999988654   799999999999998 5899999999999999999999656899999999999


Q ss_pred             CCccccccccCcccccccc
Q psy12580         79 QSWLGLKTRSRDATLSRHK   97 (239)
Q Consensus        79 ~t~l~~a~~~~~~~~~~~~   97 (239)
                      .||+++|...+...+.+..
T Consensus       129 ~tpL~~A~~~~~~~iv~~L  147 (166)
T PHA02743        129 ETAYHIAYKMRDRRMMEIL  147 (166)
T ss_pred             CCHHHHHHHcCCHHHHHHH
Confidence            9999999988876665544

>KOG0665|consensus

Probab=99.71  E-value=7.5e-18  Score=126.90  Aligned_cols=126  Identities=14%  Similarity=0.167  Sum_probs=100.4

Q ss_pred             CcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCC------ceE
Q psy12580        104 LSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP------DLV  175 (239)
Q Consensus       104 ~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~------~~~  175 (239)
                      |.-...++.|.- .|..+..  .++++++|.+...-......++..+|..++..+.|+||++++.++....      ..|
T Consensus        19 y~nL~p~~~g~~-~v~~a~D~v~~~~v~ikk~~~pf~n~~~akra~rel~l~~~v~~~nii~l~n~ftP~~~l~~~~e~y   97 (369)
T KOG0665|consen   19 YVNLKPIGSGAQ-IVVAAFDQVLGRPVAIKKLSRPFQNQTHAKRAYRELKLMKCVNHKNIISLLNVFTPQKTLEEFQEVY   97 (369)
T ss_pred             eeeecccCCCCc-eEEecchhhccCceehhhhcCccccCccchhhhhhhhhhhhhcccceeeeeeccCccccHHHHHhHH
Confidence            344455666664 3444433  5678888776554333344567889999999999999999999996654      689


Q ss_pred             EEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        176 VISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       176 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +|||+|.. +|.+.+..    .++-.++..+..|++.|++|||+.|  |+||||||+||++-
T Consensus        98 ~v~e~m~~-nl~~vi~~----elDH~tis~i~yq~~~~ik~lhs~~--IihRdLkPsnivv~  152 (369)
T KOG0665|consen   98 LVMELMDA-NLCQVILM----ELDHETISYILYQMLCGIKHLHSAG--IIHRDLKPSNIVVN  152 (369)
T ss_pred             HHHHhhhh-HHHHHHHH----hcchHHHHHHHHHHHHHHHHHHhcc--eeecccCcccceec
Confidence            99999966 99999884    4788999999999999999999999  99999999999974

>KOG0514|consensus

Probab=99.71  E-value=1.1e-17  Score=127.23  Aligned_cols=95  Identities=28%  Similarity=0.401  Sum_probs=87.9

Q ss_pred             CCcCccCCC-CCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCC
Q psy12580          1 MYYVSVTDD-HGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQ   79 (239)
Q Consensus         1 ~~~v~~~~~-~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~   79 (239)
                      |-|||++-. .|+|+|++|+.+|+.++|+.||..|||||.+|.+|-|+|+.||++||++++++|+.....+...+|.+|.
T Consensus       329 mgnVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgS  408 (452)
T KOG0514|consen  329 MGDVNAKASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGS  408 (452)
T ss_pred             ccCcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCc
Confidence            558898775 5999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccccccCcccccc
Q psy12580         80 SWLGLKTRSRDATLSR   95 (239)
Q Consensus        80 t~l~~a~~~~~~~~~~   95 (239)
                      |++..|...++..+.-
T Consensus       409 TAl~IAleagh~eIa~  424 (452)
T KOG0514|consen  409 TALSIALEAGHREIAV  424 (452)
T ss_pred             hhhhhHHhcCchHHHH
Confidence            9999999888866543

>PHA02741 hypothetical protein; Provisional

Probab=99.71  E-value=3.4e-17  Score=117.81  Aligned_cols=94  Identities=29%  Similarity=0.377  Sum_probs=84.3

Q ss_pred             CcCccCCCCCchHHHHHHHhCC----HHHHHHHHHCCCCCCccCC-CCCCHHHHHHHcCCHhHHHHHHhhcCCccccccc
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGH----LKLVELLLQRGARVNATNR-GDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINF   76 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~----~~~~~~ll~~g~~~~~~~~-~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~   76 (239)
                      .++|.+|..|+||||+|+..|+    .+++++|++.|+++|.++. .|+||||+|+..++.+++++|+...+.+++..|.
T Consensus        51 a~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~  130 (169)
T PHA02741         51 AALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNA  130 (169)
T ss_pred             hhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCC
Confidence            4688999999999999999999    5899999999999999985 9999999999999999999996556899999999


Q ss_pred             CCCCccccccccCcccccc
Q psy12580         77 KDQSWLGLKTRSRDATLSR   95 (239)
Q Consensus        77 ~~~t~l~~a~~~~~~~~~~   95 (239)
                      .|.||+++|...+...+..
T Consensus       131 ~g~tpL~~A~~~~~~~iv~  149 (169)
T PHA02741        131 DNKSPFELAIDNEDVAMMQ  149 (169)
T ss_pred             CCCCHHHHHHHCCCHHHHH
Confidence            9999999988877655443

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=99.70  E-value=7.7e-17  Score=119.17  Aligned_cols=120  Identities=16%  Similarity=0.125  Sum_probs=89.2

Q ss_pred             CcccccccCCCCCCceeecc-CCCceeeeeeeeccCCc--------------------hHHHHHHHHHhHhhhcCCC--c
Q psy12580        104 LSLHTKISSGPNGDTWRGRW-QKNDIVAKILAVRNCTP--------------------RVSRDFNEEFPKLRIFSHP--N  160 (239)
Q Consensus       104 ~~~~~~ig~g~~g~v~~~~~-~~~~~~vk~~~~~~~~~--------------------~~~~~~~~e~~~l~~l~h~--~  160 (239)
                      +.+.+.||+|+||.||++.. .+..+++|+........                    .....+..|..++..+.++  .
T Consensus        17 ~~~~~~i~~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~   96 (198)
T cd05144          17 ESLGNQIGVGKESDVYLALDPDGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAALKALYEEGFP   96 (198)
T ss_pred             hhcCCccccCcceEEEEEEcCCCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHHHHHHHHcCCC
Confidence            45668899999999999988 46788888865432110                    0112356788888888766  3


Q ss_pred             eeeeeeeeeCCCceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        161 VLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       161 iv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +...++.    ...++||||+++++|......        .....++.+++.++.++|+.+  |+||||||+||+++
T Consensus        97 v~~~~~~----~~~~lv~e~~~g~~L~~~~~~--------~~~~~~~~~i~~~l~~lh~~g--i~H~Dl~p~Nill~  159 (198)
T cd05144          97 VPKPIDW----NRHAVVMEYIDGVELYRVRVL--------EDPEEVLDEILEEIVKAYKHG--IIHGDLSEFNILVD  159 (198)
T ss_pred             CCceeec----CCceEEEEEeCCcchhhcccc--------ccHHHHHHHHHHHHHHHHHCC--CCcCCCCcccEEEc
Confidence            4444432    346899999999998765321        345678899999999999999  99999999999986

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.68  E-value=1.3e-16  Score=92.14  Aligned_cols=54  Identities=50%  Similarity=0.947  Sum_probs=46.5

Q ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHH
Q psy12580         11 GFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLA   64 (239)
Q Consensus        11 g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll   64 (239)
                      |+||||+||..|+.+++++|++.|+++|.+|.+|+||||.|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            789999999999999999999999999999999999999999999999999984

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.68  E-value=5.8e-17  Score=94.06  Aligned_cols=50  Identities=48%  Similarity=0.774  Sum_probs=33.2

Q ss_pred             CcCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHH
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLA   51 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a   51 (239)
                      -++|.+|..|.||||+||..|+.+++++|++.|++++.+|..|+||+|+|
T Consensus         7 ~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    7 ADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             --TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            37899999999999999999999999999999999999999999999987

>KOG0509|consensus

Probab=99.68  E-value=4.3e-17  Score=132.36  Aligned_cols=91  Identities=33%  Similarity=0.473  Sum_probs=84.7

Q ss_pred             CcCccCC-CCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCC
Q psy12580          2 YYVSVTD-DHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQS   80 (239)
Q Consensus         2 ~~v~~~~-~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t   80 (239)
                      .|||+.+ .-|.|||||||.+|+..+|.+|+++|||++.+|.+|.||+|+|+..|+...|-+|+ ..+++++..|..|+|
T Consensus       102 advn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll-~~~~d~d~~D~~grT  180 (600)
T KOG0509|consen  102 ADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLL-SKGADIDLRDNNGRT  180 (600)
T ss_pred             CCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHH-HhcccCCCcCCCCCC
Confidence            4788888 66999999999999999999999999999999999999999999999999999995 478999999999999


Q ss_pred             ccccccccCcccc
Q psy12580         81 WLGLKTRSRDATL   93 (239)
Q Consensus        81 ~l~~a~~~~~~~~   93 (239)
                      |++||+-.+....
T Consensus       181 pLmwAaykg~~~~  193 (600)
T KOG0509|consen  181 PLMWAAYKGFALF  193 (600)
T ss_pred             HHHHHHHhcccHH
Confidence            9999998887763

>KOG0502|consensus

Probab=99.67  E-value=7.5e-17  Score=114.89  Aligned_cols=94  Identities=30%  Similarity=0.482  Sum_probs=88.5

Q ss_pred             cCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCcc
Q psy12580          3 YVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWL   82 (239)
Q Consensus         3 ~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l   82 (239)
                      .||++|+.|.|||+||+.+|+..+|++|++.||+++.......|+|.+|+..|..++|++|+ .++.++|..|-+|.||+
T Consensus       152 ~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL-~r~vdVNvyDwNGgTpL  230 (296)
T KOG0502|consen  152 KVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLL-TREVDVNVYDWNGGTPL  230 (296)
T ss_pred             cccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHH-hcCCCcceeccCCCcee
Confidence            48999999999999999999999999999999999999999999999999999999999994 69999999999999999


Q ss_pred             ccccccCcccccccc
Q psy12580         83 GLKTRSRDATLSRHK   97 (239)
Q Consensus        83 ~~a~~~~~~~~~~~~   97 (239)
                      .+|.+.++...++..
T Consensus       231 lyAvrgnhvkcve~L  245 (296)
T KOG0502|consen  231 LYAVRGNHVKCVESL  245 (296)
T ss_pred             eeeecCChHHHHHHH
Confidence            999999998776644

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=99.67  E-value=9.3e-16  Score=116.15  Aligned_cols=121  Identities=16%  Similarity=0.102  Sum_probs=90.6

Q ss_pred             cccc-CCCCCCceeeccCCCceeeeeeeeccC-----------CchHHHHHHHHHhHhhhcCCCc--eeeeeeeeeCCC-
Q psy12580        108 TKIS-SGPNGDTWRGRWQKNDIVAKILAVRNC-----------TPRVSRDFNEEFPKLRIFSHPN--VLPVIGCVNSPP-  172 (239)
Q Consensus       108 ~~ig-~g~~g~v~~~~~~~~~~~vk~~~~~~~-----------~~~~~~~~~~e~~~l~~l~h~~--iv~l~~~~~~~~-  172 (239)
                      ..+| .|+.|.+|.....+..+++|.......           +......+.+|+.++..+.|++  +++.+++..... 
T Consensus        37 ~~lg~~~g~gtv~~v~~~~~~~vlk~~~r~~~i~kv~~~~~~~~~~~~~r~~rE~~ll~~L~~~gi~vP~pl~~~~~~~~  116 (239)
T PRK01723         37 RVVGSAKGRGTTWFVQTPGVNWVLRHYRRGGLIGKLSKDRYLFTGLERTRAFAEFRLLAQLYEAGLPVPRPIAARVVRHG  116 (239)
T ss_pred             ceeecCCCCccEEEEEeCCceEEEEEeeEcchHHhhhhhcccccchhhhHHHHHHHHHHHHHhCCCCCceeEeeeeeecC
Confidence            3566 788888999888888888887754221           1122356788999999998876  466776643322 


Q ss_pred             ---ceEEEEeeCCC-CCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        173 ---DLVVISQYMAW-GSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       173 ---~~~lv~e~~~~-gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                         ..++|||++++ .+|.+++...   .++..    .+.|++.+|.+||+.|  |+||||||+|||++
T Consensus       117 ~~~~~~lV~e~l~G~~~L~~~l~~~---~l~~~----~~~~i~~~l~~lH~~G--I~HrDlkp~NILv~  176 (239)
T PRK01723        117 LFYRADILIERIEGARDLVALLQEA---PLSEE----QWQAIGQLIARFHDAG--VYHADLNAHNILLD  176 (239)
T ss_pred             cceeeeEEEEecCCCCCHHHHHhcC---CCCHH----HHHHHHHHHHHHHHCC--CCCCCCCchhEEEc
Confidence               23599999997 6999988653   35554    3578999999999999  99999999999986

>cd05119 RIO RIO kinase family, catalytic domain

Probab=99.66  E-value=5.5e-16  Score=113.60  Aligned_cols=121  Identities=14%  Similarity=0.158  Sum_probs=81.9

Q ss_pred             cccccCCCCCCceeeccC-CCceeeeeeeeccCCchHHHHH----------------------HHHHhHhhhcCCC--ce
Q psy12580        107 HTKISSGPNGDTWRGRWQ-KNDIVAKILAVRNCTPRVSRDF----------------------NEEFPKLRIFSHP--NV  161 (239)
Q Consensus       107 ~~~ig~g~~g~v~~~~~~-~~~~~vk~~~~~~~~~~~~~~~----------------------~~e~~~l~~l~h~--~i  161 (239)
                      .+.||+|+||.||+|... +..+++|+.............+                      ..|...+..+.+.  .+
T Consensus         2 ~~~lg~G~~g~Vy~a~~~~~~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~   81 (187)
T cd05119           2 GGPIGTGKEADVYLALDGDGEPVAVKIYRTGRTSFKKRKRYRTGDYRFGRKKSNWRYLSRLWAEKEFRNLKRLYEAGVPV   81 (187)
T ss_pred             CcccccccceeEEEEECCCCCEEEEEEEecCccchhhhhhhhHHHHHhccCCcchhhhhhHHHHHHHHHHHHHHHcCCCC
Confidence            457899999999999886 6788889876532221111111                      2455555555332  34


Q ss_pred             eeeeeeeeCCCceEEEEeeCCCCCHHH-HhhcCCCcccCHHHHHHHHHHHHHHhhhhhc-CCCCcccCCCCCccceee
Q psy12580        162 LPVIGCVNSPPDLVVISQYMAWGSLYA-LLHEGAGIVVDFAQALRFAVDVARGMAFLHS-LERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       162 v~l~~~~~~~~~~~lv~e~~~~gsL~~-~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~-~~~~ivHrdikp~Nill~  237 (239)
                      .+.+++    ...++||||++++++.. .+....   .. ..+..++.+++.++.++|+ .+  |+||||||+||+++
T Consensus        82 ~~~~~~----~~~~lv~e~~~g~~~~~~~l~~~~---~~-~~~~~~~~~~~~~l~~lh~~~~--ivH~Dl~p~Nili~  149 (187)
T cd05119          82 PKPIDL----NRHVLVMEFIGGDGIPAPRLKDVR---LL-EDPEELYDQILELMRKLYREAG--LVHGDLSEYNILVD  149 (187)
T ss_pred             CceEec----CCCEEEEEEeCCCCccChhhhhhh---hc-ccHHHHHHHHHHHHHHHhhccC--cCcCCCChhhEEEE
Confidence            444443    23589999999854321 121111   11 6688999999999999999 99  99999999999985

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>KOG1166|consensus

Probab=99.65  E-value=1.8e-16  Score=137.27  Aligned_cols=133  Identities=15%  Similarity=0.250  Sum_probs=105.6

Q ss_pred             ccCCCCCCCcccccccCCCCCCceeecc-CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcC---CCceeeeeeeeeCC
Q psy12580         96 HKGISLNDLSLHTKISSGPNGDTWRGRW-QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFS---HPNVLPVIGCVNSP  171 (239)
Q Consensus        96 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~---h~~iv~l~~~~~~~  171 (239)
                      ...+....|.+...+|+|+||.||.|.. +++.+|+|+-+..+...     |+.-..++.+|+   -+.|..+..++...
T Consensus       692 ~~~~~~~~~~I~~e~G~g~y~~vy~a~~~~~~~~alK~e~P~~~WE-----fYI~~q~~~RLk~~~~~~~~~~~~a~~~~  766 (974)
T KOG1166|consen  692 EFEVGGEKFCISKEIGEGSYGSVYVATHSNGKLVALKVEKPPNPWE-----FYICLQVMERLKPQMLPSIMHISSAHVFQ  766 (974)
T ss_pred             eeeecceeEEEEeeeccccceEEEEeecCCCcEEEEEeecCCCcee-----eeehHHHHHhhchhhhcchHHHHHHHccC
Confidence            3445667788999999999999999987 45566667776554332     333344555555   23456666666777


Q ss_pred             CceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        172 PDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       172 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +.-.+|+||.+.|+|.+++....  .+++..+..+..|++.-++.||..+  |||+||||+|+||.
T Consensus       767 ~~S~lv~ey~~~Gtlld~~N~~~--~m~e~lv~~~~~qml~ive~lH~~~--IIHgDiKPDNfll~  828 (974)
T KOG1166|consen  767 NASVLVSEYSPYGTLLDLINTNK--VMDEYLVMFFSCQMLRIVEHLHAMG--IIHGDIKPDNFLLR  828 (974)
T ss_pred             CcceeeeeccccccHHHhhccCC--CCCchhhhHHHHHHHHHHHHHHhcc--eecccCCcceeEee
Confidence            78899999999999999999554  7999999999999999999999999  99999999999985

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.63  E-value=9.6e-17  Score=113.84  Aligned_cols=91  Identities=21%  Similarity=0.314  Sum_probs=79.0

Q ss_pred             ccCCCCCchHHHHHHHhCCH---HHHHHHHHCCCCCCccCC-CCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCC
Q psy12580          5 SVTDDHGFSPLHWACKEGHL---KLVELLLQRGARVNATNR-GDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQS   80 (239)
Q Consensus         5 ~~~~~~g~tpl~~a~~~~~~---~~~~~ll~~g~~~~~~~~-~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t   80 (239)
                      +.+|.+|+||||+|+..++.   +++++|++.|+++|.++. .|.||||+|+..|+.+++++|+.+.+.+++..+..|.|
T Consensus        49 ~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~t  128 (154)
T PHA02736         49 LEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKT  128 (154)
T ss_pred             HHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCC
Confidence            34688899999999988876   468899999999999985 89999999999999999999965568999999999999


Q ss_pred             ccccccccCcccccc
Q psy12580         81 WLGLKTRSRDATLSR   95 (239)
Q Consensus        81 ~l~~a~~~~~~~~~~   95 (239)
                      |+++|...+...+..
T Consensus       129 pL~~A~~~~~~~i~~  143 (154)
T PHA02736        129 PYYVACERHDAKMMN  143 (154)
T ss_pred             HHHHHHHcCCHHHHH
Confidence            999998877655544

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=99.63  E-value=4.7e-15  Score=117.49  Aligned_cols=132  Identities=20%  Similarity=0.297  Sum_probs=111.9

Q ss_pred             CcccccccCCCCCCceeeccCCCceeeeeeeeccCCch-HHHHHHHHHhHhhhcCCC-ceeeeeeeeeCCCceEEEEeeC
Q psy12580        104 LSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPR-VSRDFNEEFPKLRIFSHP-NVLPVIGCVNSPPDLVVISQYM  181 (239)
Q Consensus       104 ~~~~~~ig~g~~g~v~~~~~~~~~~~vk~~~~~~~~~~-~~~~~~~e~~~l~~l~h~-~iv~l~~~~~~~~~~~lv~e~~  181 (239)
                      |...+.+|.|+|+.||.+... ..+++|.+........ ....+.+|...+..+.|+ +++++...+......+++++++
T Consensus         2 ~~~~~~l~~g~~~~v~~~~~~-~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   80 (384)
T COG0515           2 YRILRKLGEGSFGEVYLARDR-KLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNIVKLYDFFQDEGSLYLVMEYV   80 (384)
T ss_pred             ceeEEeecCCCCeEEEEEEec-cEEEEEeechhhccchhHHHHHHHHHHHHHHccCCcceeeEEEEEecCCEEEEEEecC
Confidence            456778899999999999887 6667788766554443 567889999999999887 7999999997777789999999


Q ss_pred             CCCCHHHHhhcCCC-cccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceeec
Q psy12580        182 AWGSLYALLHEGAG-IVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVYI  238 (239)
Q Consensus       182 ~~gsL~~~l~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~~  238 (239)
                      .++++.+++..... ..++......+..|++.++.|+|+.+  ++|||+||+||+++.
T Consensus        81 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~H~~~--~~hrd~kp~nil~~~  136 (384)
T COG0515          81 DGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLHSKG--IIHRDIKPENILLDR  136 (384)
T ss_pred             CCCcHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHhCC--eeccCCCHHHeeecC
Confidence            99999977776531 15889999999999999999999999  999999999999874

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=99.62  E-value=2.6e-15  Score=105.99  Aligned_cols=118  Identities=18%  Similarity=0.164  Sum_probs=96.1

Q ss_pred             cccccCCCCCCceeeccCCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCC--CceeeeeeeeeCCCceEEEEeeCCCC
Q psy12580        107 HTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSH--PNVLPVIGCVNSPPDLVVISQYMAWG  184 (239)
Q Consensus       107 ~~~ig~g~~g~v~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h--~~iv~l~~~~~~~~~~~lv~e~~~~g  184 (239)
                      .+.+|+|.++.||++...+..+++|.......    ...+..|...+..+++  +.+++++.+....+..++++||+.++
T Consensus         3 ~~~i~~g~~~~v~~~~~~~~~~~iK~~~~~~~----~~~~~~e~~~~~~l~~~~~~~p~~~~~~~~~~~~~~v~e~~~g~   78 (155)
T cd05120           3 IKLLKGGLTNRVYLLGTKDEDYVLKINPSREK----GADREREVAILQLLARKGLPVPKVLASGESDGWSYLLMEWIEGE   78 (155)
T ss_pred             ceecccccccceEEEEecCCeEEEEecCCCCc----hhHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCccEEEEEecCCe
Confidence            45789999999999998777888888754322    3567889999999965  58899998888778899999999887


Q ss_pred             CHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCC-CCcccCCCCCccceee
Q psy12580        185 SLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLE-RIIPQYQLNSRHVMVY  237 (239)
Q Consensus       185 sL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~-~~ivHrdikp~Nill~  237 (239)
                      ++..+         +......++.+++++|.++|... ..++|+|++|+||+++
T Consensus        79 ~~~~~---------~~~~~~~~~~~~~~~l~~lh~~~~~~i~H~Dl~~~Nil~~  123 (155)
T cd05120          79 TLDEV---------SEEEKEDIAEQLAELLAKLHQLPLLVLCHGDLHPGNILVD  123 (155)
T ss_pred             ecccC---------CHHHHHHHHHHHHHHHHHHhCCCceEEEecCCCcceEEEE
Confidence            76543         45667788999999999999842 2299999999999985

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>KOG0670|consensus

Probab=99.62  E-value=6.5e-16  Score=123.59  Aligned_cols=130  Identities=11%  Similarity=0.169  Sum_probs=109.7

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCC------CceeeeeeeeeCCCc
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSH------PNVLPVIGCVNSPPD  173 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h------~~iv~l~~~~~~~~~  173 (239)
                      ..|.+....|+|-|+.|.+|..  .+..||+|++...   .-.-+.-+.|+.+|++|+.      -|+++++..|...++
T Consensus       432 ~RY~V~~~~GkGvFs~Vvra~D~~r~~~vAiKIIRnN---E~M~KtGl~EleiLkKL~~AD~Edk~Hclrl~r~F~hknH  508 (752)
T KOG0670|consen  432 SRYEVQGYTGKGVFSTVVRARDQARGQEVAIKIIRNN---EVMHKTGLKELEILKKLNDADPEDKFHCLRLFRHFKHKNH  508 (752)
T ss_pred             ceeEEEeccccceeeeeeeccccCCCCeeEEEEeecc---hHHhhhhhHHHHHHHHhhccCchhhhHHHHHHHHhhhcce
Confidence            4566777789999999999987  5678888988543   2233566789999999852      279999999999999


Q ss_pred             eEEEEeeCCCCCHHHHhhcCC-CcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        174 LVVISQYMAWGSLYALLHEGA-GIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~~~-~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +|||+|-+.- +|.++|++-+ +..+....+..++.|+.-||..|-.+|  |+|.||||.|||+.
T Consensus       509 LClVFE~Lsl-NLRevLKKyG~nvGL~ikaVRsYaqQLflALklLK~c~--vlHaDIKPDNiLVN  570 (752)
T KOG0670|consen  509 LCLVFEPLSL-NLREVLKKYGRNVGLHIKAVRSYAQQLFLALKLLKKCG--VLHADIKPDNILVN  570 (752)
T ss_pred             eEEEehhhhc-hHHHHHHHhCcccceeehHHHHHHHHHHHHHHHHHhcC--eeecccCccceEec
Confidence            9999999955 9999999743 346889999999999999999999999  99999999999984

>KOG4214|consensus

Probab=99.62  E-value=6.4e-16  Score=95.01  Aligned_cols=73  Identities=34%  Similarity=0.495  Sum_probs=67.5

Q ss_pred             CCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCccc
Q psy12580         10 HGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWLG   83 (239)
Q Consensus        10 ~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l~   83 (239)
                      .|+||||+|+..|+.++.++|+..||+++.+|+.|-|||..|.+.||.++|++| ++.|++.+....+|.+.+.
T Consensus        33 ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cVklL-L~~GAdrt~~~PdG~~~~e  105 (117)
T KOG4214|consen   33 GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCVKLL-LQNGADRTIHAPDGTALIE  105 (117)
T ss_pred             CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHHHHH-HHcCcccceeCCCchhHHh
Confidence            799999999999999999999999999999999999999999999999999999 5699998887777776654

>KOG0508|consensus

Probab=99.62  E-value=2.1e-16  Score=124.15  Aligned_cols=110  Identities=24%  Similarity=0.325  Sum_probs=89.2

Q ss_pred             CcCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCc
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSW   81 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (239)
                      +|+++.|..|.|+||+||.+|+.+|+++|++.|||+|.++..|.|+||.+++.|+.+++++|+ ..|+.+..-. .|.||
T Consensus       141 ad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll-~~ga~i~~d~-~GmtP  218 (615)
T KOG0508|consen  141 ADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLL-KHGAKIDVDG-HGMTP  218 (615)
T ss_pred             CCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHH-hCCceeeecC-CCCch
Confidence            588999999999999999999999999999999999999999999999999999999999994 5787766544 49999


Q ss_pred             cccccccCccccccccC----CCCCCCcccccccCC
Q psy12580         82 LGLKTRSRDATLSRHKG----ISLNDLSLHTKISSG  113 (239)
Q Consensus        82 l~~a~~~~~~~~~~~~~----~~~~~~~~~~~ig~g  113 (239)
                      +..|...++..++...-    .....++..+.+|..
T Consensus       219 L~~Aa~tG~~~iVe~L~~~~~sr~~riealEllGat  254 (615)
T KOG0508|consen  219 LLLAAVTGHTDIVERLLQCETSRESRIEALELLGAT  254 (615)
T ss_pred             HHHHhhhcchHHHHHHhcCCcchhhHHHHHHHhccc
Confidence            99999888876555322    122334455566643

>KOG4177|consensus

Probab=99.61  E-value=6.8e-16  Score=134.94  Aligned_cols=95  Identities=32%  Similarity=0.489  Sum_probs=88.6

Q ss_pred             cCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCcc
Q psy12580          3 YVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWL   82 (239)
Q Consensus         3 ~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l   82 (239)
                      +++.++.+|.||||.||..|+.++|++|+++||+++.+++.|+||||.||..|+.+++.+| .+.|+++|..+.++.|++
T Consensus       532 ~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LL-lk~GA~vna~d~~g~TpL  610 (1143)
T KOG4177|consen  532 NVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELL-LKHGASVNAADLDGFTPL  610 (1143)
T ss_pred             ceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHH-HHcCCCCCcccccCcchh
Confidence            6788999999999999999999999999999999999999999999999999999999999 569999999999999999


Q ss_pred             ccccccCccccccccC
Q psy12580         83 GLKTRSRDATLSRHKG   98 (239)
Q Consensus        83 ~~a~~~~~~~~~~~~~   98 (239)
                      ..|...+....+....
T Consensus       611 ~iA~~lg~~~~~k~l~  626 (1143)
T KOG4177|consen  611 HIAVRLGYLSVVKLLK  626 (1143)
T ss_pred             HHHHHhcccchhhHHH
Confidence            9999988877666443

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.61  E-value=1.9e-15  Score=116.81  Aligned_cols=90  Identities=20%  Similarity=0.213  Sum_probs=77.2

Q ss_pred             CcCccC----CCCCchHHHHHHHhCCHHHHHHHHHCCCCCCcc-CCCCCCHHHHHHHcCCHhHHHHHHhhcCCccccccc
Q psy12580          2 YYVSVT----DDHGFSPLHWACKEGHLKLVELLLQRGARVNAT-NRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINF   76 (239)
Q Consensus         2 ~~v~~~----~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~-~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~   76 (239)
                      .|+|.+    |..|.||||+|+..++.+++++|+++||++|.+ +..|.||||.|+..|+.+++++|+ ..|++++..+.
T Consensus        57 AdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~~~~~eivklLL-~~GAdin~kd~  135 (300)
T PHA02884         57 ADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLHGCLKCLEILL-SYGADINIQTN  135 (300)
T ss_pred             CCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHHcCCHHHHHHHH-HCCCCCCCCCC
Confidence            367776    458999999999999999999999999999986 457999999999999999999994 58999999999


Q ss_pred             CCCCccccccccCccc
Q psy12580         77 KDQSWLGLKTRSRDAT   92 (239)
Q Consensus        77 ~~~t~l~~a~~~~~~~   92 (239)
                      .|.||+++|...+...
T Consensus       136 ~G~TpL~~A~~~~~~~  151 (300)
T PHA02884        136 DMVTPIELALMICNNF  151 (300)
T ss_pred             CCCCHHHHHHHhCChh
Confidence            9999999887655433

>PHA02946 ankyin-like protein; Provisional

Probab=99.61  E-value=1.7e-15  Score=124.73  Aligned_cols=84  Identities=30%  Similarity=0.394  Sum_probs=74.6

Q ss_pred             CcCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCC--HhHHHHHHhhcCCcccc-cccCC
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGH--LDIVRLLAVQNNQDLTK-INFKD   78 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~--~~~v~~Ll~~~~~~~~~-~~~~~   78 (239)
                      .|+|.+|.+|+||||+||..|+.+++++|+++||++|.+|..|+||||+|+..++  .+++++|+ +.|++++. .+..|
T Consensus        63 advn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl-~~Gadin~~~d~~g  141 (446)
T PHA02946         63 YSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLV-QYGAKINNSVDEEG  141 (446)
T ss_pred             CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHH-HcCCCcccccCCCC
Confidence            5899999999999999999999999999999999999999999999999987654  78899885 68999885 67888


Q ss_pred             CCcccccc
Q psy12580         79 QSWLGLKT   86 (239)
Q Consensus        79 ~t~l~~a~   86 (239)
                      .||++.+.
T Consensus       142 ~tpL~aa~  149 (446)
T PHA02946        142 CGPLLACT  149 (446)
T ss_pred             CcHHHHHH
Confidence            99986443

>PHA02791 ankyrin-like protein; Provisional

Probab=99.61  E-value=1.7e-15  Score=116.87  Aligned_cols=91  Identities=27%  Similarity=0.306  Sum_probs=80.4

Q ss_pred             CccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCccc
Q psy12580          4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWLG   83 (239)
Q Consensus         4 v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l~   83 (239)
                      .+.+|.+|+||||+|+..|+.+++++|++.|++++..+  |.||||+|+..|+.+++++|+ +.|++++..+..|.||++
T Consensus        23 a~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~g~~eiV~lLL-~~Gadvn~~d~~G~TpLh   99 (284)
T PHA02791         23 AFKADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILL-FSGMDDSQFDDKGNTALY   99 (284)
T ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCC--CCCHHHHHHHCCCHHHHHHHH-HCCCCCCCCCCCCCCHHH
Confidence            36789999999999999999999999999999998875  689999999999999999995 589999999999999999


Q ss_pred             cccccCcccccccc
Q psy12580         84 LKTRSRDATLSRHK   97 (239)
Q Consensus        84 ~a~~~~~~~~~~~~   97 (239)
                      +|...+...+.+..
T Consensus       100 ~Aa~~g~~eivk~L  113 (284)
T PHA02791        100 YAVDSGNMQTVKLF  113 (284)
T ss_pred             HHHHcCCHHHHHHH
Confidence            99988887766644

>PHA02791 ankyrin-like protein; Provisional

Probab=99.61  E-value=1.7e-15  Score=116.86  Aligned_cols=84  Identities=21%  Similarity=0.237  Sum_probs=58.4

Q ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCC-CCccccccccC
Q psy12580         11 GFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKD-QSWLGLKTRSR   89 (239)
Q Consensus        11 g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~-~t~l~~a~~~~   89 (239)
                      |+||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+ +.+++++..+..| .|++++|...+
T Consensus        61 ~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll-~~gadin~~~~~g~~TpL~~Aa~~g  139 (284)
T PHA02791         61 NEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFV-KKNWRLMFYGKTGWKTSFYHAVMLN  139 (284)
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-HCCCCcCccCCCCCcHHHHHHHHcC
Confidence            567777777777777777777777777777777777777777777777777773 4666766666655 36777666666


Q ss_pred             cccccc
Q psy12580         90 DATLSR   95 (239)
Q Consensus        90 ~~~~~~   95 (239)
                      +..+.+
T Consensus       140 ~~eivk  145 (284)
T PHA02791        140 DVSIVS  145 (284)
T ss_pred             CHHHHH
Confidence            655444

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.60  E-value=1.8e-15  Score=133.45  Aligned_cols=95  Identities=21%  Similarity=0.309  Sum_probs=81.1

Q ss_pred             CcCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHH------------------
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL------------------   63 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~L------------------   63 (239)
                      .|+|.+|.+|+||||+||..|+.+++++|+++|+++|.+|.+|+||||.|+..|+.+++++|                  
T Consensus       549 ~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~~~~~~~L~~  628 (823)
T PLN03192        549 LDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDPHAAGDLLCT  628 (823)
T ss_pred             CCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCcccCchHHHH
Confidence            47899999999999999999999999999999999999999999999987777776665554                  


Q ss_pred             ------------HhhcCCcccccccCCCCccccccccCccccccc
Q psy12580         64 ------------AVQNNQDLTKINFKDQSWLGLKTRSRDATLSRH   96 (239)
Q Consensus        64 ------------l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~   96 (239)
                                  +.+.|++++..|..|.||+++|...++..+.+.
T Consensus       629 Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~  673 (823)
T PLN03192        629 AAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRL  673 (823)
T ss_pred             HHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHH
Confidence                        145788888888899999998888777665553

>KOG1024|consensus

Probab=99.60  E-value=1.8e-15  Score=117.24  Aligned_cols=136  Identities=21%  Similarity=0.288  Sum_probs=109.5

Q ss_pred             CCCCCCcccccccCCCCCCceeeccC------C-CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCC
Q psy12580         99 ISLNDLSLHTKISSGPNGDTWRGRWQ------K-NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSP  171 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g~~g~v~~~~~~------~-~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~  171 (239)
                      +..+.+.....+-+|.||.||+|.|+      + +.+.+|.++.. .++-....+..|.-.+..+.|||+.++.+++...
T Consensus       281 v~r~Rv~l~~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~~-AS~iQv~~~L~es~lly~~sH~nll~V~~V~ie~  359 (563)
T KOG1024|consen  281 VQRCRVRLSCLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQH-ASQIQVNLLLQESMLLYGASHPNLLSVLGVSIED  359 (563)
T ss_pred             hhhhheechhhhhcCchhheeeeeecccCCcchHHHHHHHHHHhc-ccHHHHHHHHHHHHHHhcCcCCCccceeEEEeec
Confidence            34455677778899999999999653      2 34455766543 3344557788999999999999999999988554


Q ss_pred             -CceEEEEeeCCCCCHHHHhhc------CCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        172 -PDLVVISQYMAWGSLYALLHE------GAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       172 -~~~~lv~e~~~~gsL~~~l~~------~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                       ...+.++.++.-|+|..+++.      ...+.++..+...++.|++.||+|||+++  +||.||..+|++||
T Consensus       360 ~~~P~V~y~~~~~gNLK~FL~~Cr~~~~~~aqtvtt~qlV~masQla~am~hlh~~~--ViHkDiAaRNCvId  430 (563)
T KOG1024|consen  360 YATPFVLYPATGVGNLKSFLQICRGDDPSYAQTVTTIQLVLMASQLAMAMEHLHNHG--VIHKDIAARNCVID  430 (563)
T ss_pred             cCcceEEEeccCcchHHHHHHHhccCCCccccchhHHHHHHHHHHHHHHHHHHHhcC--cccchhhhhcceeh
Confidence             477888999999999999982      12245778889999999999999999999  99999999999987

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.60  E-value=2.6e-15  Score=123.92  Aligned_cols=94  Identities=26%  Similarity=0.342  Sum_probs=80.6

Q ss_pred             CcCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCc
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSW   81 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (239)
                      .|+|.+|..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+ +.|++++..+..|.||
T Consensus       115 ~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll-~~g~~~n~~~~~g~tp  193 (434)
T PHA02874        115 IDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLL-EKGAYANVKDNNGESP  193 (434)
T ss_pred             CCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHH-HCCCCCCCCCCCCCCH
Confidence            467888889999999999999999999999999999999999999999999999999999884 5888888888888999


Q ss_pred             cccccccCccccccc
Q psy12580         82 LGLKTRSRDATLSRH   96 (239)
Q Consensus        82 l~~a~~~~~~~~~~~   96 (239)
                      +++|...+...+.+.
T Consensus       194 L~~A~~~g~~~iv~~  208 (434)
T PHA02874        194 LHNAAEYGDYACIKL  208 (434)
T ss_pred             HHHHHHcCCHHHHHH
Confidence            988888777655553

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.59  E-value=4.8e-15  Score=95.13  Aligned_cols=64  Identities=41%  Similarity=0.743  Sum_probs=56.2

Q ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccc
Q psy12580         11 GFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKIN   75 (239)
Q Consensus        11 g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~   75 (239)
                      |.||||+||..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+ +.|++++..|
T Consensus        26 ~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll-~~g~~~~~~n   89 (89)
T PF12796_consen   26 GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVKLLL-EHGADVNIRN   89 (89)
T ss_dssp             SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHHHHH-HTTT-TTSS-
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCCcC
Confidence            889999999999999999999999999999999999999999999999999995 5788877553

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.59  E-value=5.9e-15  Score=109.68  Aligned_cols=111  Identities=14%  Similarity=0.199  Sum_probs=84.2

Q ss_pred             CcCccCC-CCCchHHHHHHHh---CCHHHHHHHHHCCCCCCccCCCCCCHHHHHHH--cCCHhHHHHHHhhcCCcccccc
Q psy12580          2 YYVSVTD-DHGFSPLHWACKE---GHLKLVELLLQRGARVNATNRGDDTPLHLAAA--HGHLDIVRLLAVQNNQDLTKIN   75 (239)
Q Consensus         2 ~~v~~~~-~~g~tpl~~a~~~---~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~--~g~~~~v~~Ll~~~~~~~~~~~   75 (239)
                      .|+|.++ ..|+||||+|+..   ++.+++++|+++|+++|.+|..|.||||.|+.  .++.+++++|+ +.|++++..+
T Consensus        77 advn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li-~~gadin~~d  155 (209)
T PHA02859         77 ADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLI-DSGVSFLNKD  155 (209)
T ss_pred             CCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHH-HcCCCccccc
Confidence            4788887 4799999998754   47999999999999999999999999999875  46899999995 6899999999


Q ss_pred             cCCCCcccc-ccccCccccccccCCCCCCCcccccccCC
Q psy12580         76 FKDQSWLGL-KTRSRDATLSRHKGISLNDLSLHTKISSG  113 (239)
Q Consensus        76 ~~~~t~l~~-a~~~~~~~~~~~~~~~~~~~~~~~~ig~g  113 (239)
                      ..|.|+++. +...+...+.........++...+.-|..
T Consensus       156 ~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~~g~t  194 (209)
T PHA02859        156 FDNNNILYSYILFHSDKKIFDFLTSLGIDINETNKSGYN  194 (209)
T ss_pred             CCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCC
Confidence            999999984 44445555544332223334433333433

>KOG0510|consensus

Probab=99.58  E-value=7e-16  Score=128.38  Aligned_cols=94  Identities=29%  Similarity=0.475  Sum_probs=85.7

Q ss_pred             CccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHh-hcCCcccccccCCCCcc
Q psy12580          4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAV-QNNQDLTKINFKDQSWL   82 (239)
Q Consensus         4 v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~-~~~~~~~~~~~~~~t~l   82 (239)
                      ||..|++|.||||+||..|+.+.+..|+..|++++.++.++.||||.|+..|+.+.|+.|+. ......+..|..|.||+
T Consensus       266 v~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpL  345 (929)
T KOG0510|consen  266 VNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPL  345 (929)
T ss_pred             hhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCch
Confidence            67889999999999999999999999999999999999999999999999999999999976 44566778899999999


Q ss_pred             ccccccCcccccccc
Q psy12580         83 GLKTRSRDATLSRHK   97 (239)
Q Consensus        83 ~~a~~~~~~~~~~~~   97 (239)
                      ++|.++++....+..
T Consensus       346 Hlaa~~gH~~v~qlL  360 (929)
T KOG0510|consen  346 HLAAKSGHDRVVQLL  360 (929)
T ss_pred             hhhhhcCHHHHHHHH
Confidence            999999988776643

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.57  E-value=6.1e-15  Score=123.11  Aligned_cols=86  Identities=29%  Similarity=0.421  Sum_probs=73.8

Q ss_pred             CcCccCCCC-CchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCC
Q psy12580          2 YYVSVTDDH-GFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQS   80 (239)
Q Consensus         2 ~~v~~~~~~-g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t   80 (239)
                      .|+|.+|.. |+||||+|+..|+.+++++|++.|++++.+|..|+||||.|+..|+.+++++|+ +.|++++..+..|.|
T Consensus       158 adin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll-~~ga~in~~d~~g~T  236 (477)
T PHA02878        158 ADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILL-ENGASTDARDKCGNT  236 (477)
T ss_pred             CCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHH-HcCCCCCCCCCCCCC
Confidence            467888888 899999999999999999999999999998889999999999888899988884 588888888888889


Q ss_pred             cccccccc
Q psy12580         81 WLGLKTRS   88 (239)
Q Consensus        81 ~l~~a~~~   88 (239)
                      |+++|...
T Consensus       237 pLh~A~~~  244 (477)
T PHA02878        237 PLHISVGY  244 (477)
T ss_pred             HHHHHHHh
Confidence            88887753

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.57  E-value=6.5e-15  Score=109.46  Aligned_cols=91  Identities=15%  Similarity=0.257  Sum_probs=77.5

Q ss_pred             CccCCCCCchHHHHHHHhC--CHHHHHHHHHCCCCCCccC-CCCCCHHHHHHHc---CCHhHHHHHHhhcCCcccccccC
Q psy12580          4 VSVTDDHGFSPLHWACKEG--HLKLVELLLQRGARVNATN-RGDDTPLHLAAAH---GHLDIVRLLAVQNNQDLTKINFK   77 (239)
Q Consensus         4 v~~~~~~g~tpl~~a~~~~--~~~~~~~ll~~g~~~~~~~-~~g~t~l~~a~~~---g~~~~v~~Ll~~~~~~~~~~~~~   77 (239)
                      +|..|..|.||||+|+.++  +.+++++|++.|+++|.++ ..|+||||+|+..   ++.+++++|+ +.|++++..+..
T Consensus        44 ~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll-~~gadin~~d~~  122 (209)
T PHA02859         44 VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILI-DSGSSITEEDED  122 (209)
T ss_pred             hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHH-HCCCCCCCcCCC
Confidence            6788999999999999865  8999999999999999997 4899999998764   4799999995 699999999999


Q ss_pred             CCCcccccccc--Ccccccc
Q psy12580         78 DQSWLGLKTRS--RDATLSR   95 (239)
Q Consensus        78 ~~t~l~~a~~~--~~~~~~~   95 (239)
                      |.||++++...  ++..+.+
T Consensus       123 G~TpLh~a~~~~~~~~~iv~  142 (209)
T PHA02859        123 GKNLLHMYMCNFNVRINVIK  142 (209)
T ss_pred             CCCHHHHHHHhccCCHHHHH
Confidence            99999987543  3344444

>PHA02741 hypothetical protein; Provisional

Probab=99.57  E-value=3.6e-15  Score=107.31  Aligned_cols=93  Identities=20%  Similarity=0.317  Sum_probs=81.5

Q ss_pred             CccCCCCCchHHHHHHHhCCHHHHHHHHH------CCCCCCccCCCCCCHHHHHHHcCC----HhHHHHHHhhcCCcccc
Q psy12580          4 VSVTDDHGFSPLHWACKEGHLKLVELLLQ------RGARVNATNRGDDTPLHLAAAHGH----LDIVRLLAVQNNQDLTK   73 (239)
Q Consensus         4 v~~~~~~g~tpl~~a~~~~~~~~~~~ll~------~g~~~~~~~~~g~t~l~~a~~~g~----~~~v~~Ll~~~~~~~~~   73 (239)
                      ++.+|..|.||||+||..|+.+++++|+.      .|++++.+|..|+||||+|+..|+    .+++++|+ +.|++++.
T Consensus        14 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll-~~gadin~   92 (169)
T PHA02741         14 IAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLI-ELGADINA   92 (169)
T ss_pred             hhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHH-HcCCCCCC
Confidence            57889999999999999999999998853      368999999999999999999999    57888884 58999998


Q ss_pred             ccc-CCCCccccccccCcccccccc
Q psy12580         74 INF-KDQSWLGLKTRSRDATLSRHK   97 (239)
Q Consensus        74 ~~~-~~~t~l~~a~~~~~~~~~~~~   97 (239)
                      .+. .|.||+++|...+...+.+..
T Consensus        93 ~~~~~g~TpLh~A~~~~~~~iv~~L  117 (169)
T PHA02741         93 QEMLEGDTALHLAAHRRDHDLAEWL  117 (169)
T ss_pred             CCcCCCCCHHHHHHHcCCHHHHHHH
Confidence            885 899999999998887766643

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.56  E-value=9.7e-15  Score=119.88  Aligned_cols=90  Identities=27%  Similarity=0.364  Sum_probs=71.5

Q ss_pred             ccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCcccc
Q psy12580          5 SVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWLGL   84 (239)
Q Consensus         5 ~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~   84 (239)
                      +..+.+|+||||+|+..++.+++++|++.|++++.++..|.||||+|+..|+.+++++|+ +.+++++..+..|.||+++
T Consensus        96 ~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll-~~g~~~~~~d~~g~TpL~~  174 (413)
T PHA02875         96 DVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLI-DHKACLDIEDCCGCTPLII  174 (413)
T ss_pred             ccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-hcCCCCCCCCCCCCCHHHH
Confidence            345667888888888888888888888888888888888888888888888888888884 5778888888888888888


Q ss_pred             ccccCcccccc
Q psy12580         85 KTRSRDATLSR   95 (239)
Q Consensus        85 a~~~~~~~~~~   95 (239)
                      |...+...+.+
T Consensus       175 A~~~g~~eiv~  185 (413)
T PHA02875        175 AMAKGDIAICK  185 (413)
T ss_pred             HHHcCCHHHHH
Confidence            87777665544

>KOG0514|consensus

Probab=99.56  E-value=9.6e-16  Score=116.86  Aligned_cols=117  Identities=25%  Similarity=0.352  Sum_probs=96.7

Q ss_pred             CcCccCCCCCchHHHHHHHhCCHHHHHHHHHCC-CCCCccCCC-------------------------------------
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRG-ARVNATNRG-------------------------------------   43 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g-~~~~~~~~~-------------------------------------   43 (239)
                      |-||..|.+|+|+||||+.+.++++|+.||+.| ++++.+++-                                     
T Consensus       259 yvVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNaKAsQ  338 (452)
T KOG0514|consen  259 YVVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVNAKASQ  338 (452)
T ss_pred             HHhhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcchhhhh
Confidence            668999999999999999999999999999886 577666554                                     


Q ss_pred             -CCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCccccccccCccccccccC-CCCCCCcccccccCCCCCCce
Q psy12580         44 -DDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWLGLKTRSRDATLSRHKG-ISLNDLSLHTKISSGPNGDTW  119 (239)
Q Consensus        44 -g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~-~~~~~~~~~~~ig~g~~g~v~  119 (239)
                       |.|+|++|+.+|+.++|+.|+ .+|+|+|..|.+|.|+|+-|..-++..+..... .+..+..+.+.-|++++...+
T Consensus       339 ~gQTALMLAVSHGr~d~vk~LL-acgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAl  415 (452)
T KOG0514|consen  339 HGQTALMLAVSHGRVDMVKALL-ACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIAL  415 (452)
T ss_pred             hcchhhhhhhhcCcHHHHHHHH-HccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHH
Confidence             666778888999999999994 599999999999999999999999988887543 345666677777777776544

>PHA03095 ankyrin-like protein; Provisional

Probab=99.54  E-value=1.2e-14  Score=121.43  Aligned_cols=94  Identities=30%  Similarity=0.332  Sum_probs=84.7

Q ss_pred             CcCccCCCCCchHHHHHHHhCCH--HHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCC
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHL--KLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQ   79 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~--~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~   79 (239)
                      .++|.+|..|+||||+|+..++.  .+++.|++.|+++|.+|..|+||||+|+..|+.+++++|+ +.|++++..+..|.
T Consensus       213 ~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL-~~gad~n~~~~~g~  291 (471)
T PHA03095        213 CDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLI-ALGADINAVSSDGN  291 (471)
T ss_pred             CCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCcccCCCCC
Confidence            47889999999999999999875  6888999999999999999999999999999999999995 58999999999999


Q ss_pred             CccccccccCccccccc
Q psy12580         80 SWLGLKTRSRDATLSRH   96 (239)
Q Consensus        80 t~l~~a~~~~~~~~~~~   96 (239)
                      ||++.|...++..+...
T Consensus       292 tpl~~A~~~~~~~~v~~  308 (471)
T PHA03095        292 TPLSLMVRNNNGRAVRA  308 (471)
T ss_pred             CHHHHHHHhCCHHHHHH
Confidence            99999988887766553

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.53  E-value=1.9e-14  Score=120.22  Aligned_cols=84  Identities=29%  Similarity=0.444  Sum_probs=77.2

Q ss_pred             CcCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHc-CCHhHHHHHHhhcCCccccccc-CCC
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAH-GHLDIVRLLAVQNNQDLTKINF-KDQ   79 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~-g~~~~v~~Ll~~~~~~~~~~~~-~~~   79 (239)
                      .++|.+|..|+||||+|+..++.+++++|++.|++++.+|..|.||||+|+.. ++.+++++|+ +.|++++..+. .|.
T Consensus       192 ad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll-~~gadvn~~~~~~g~  270 (477)
T PHA02878        192 ANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLL-EHGVDVNAKSYILGL  270 (477)
T ss_pred             CCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHH-HcCCCCCccCCCCCC
Confidence            47899999999999999999999999999999999999999999999999975 7899999994 68999998775 799


Q ss_pred             Ccccccc
Q psy12580         80 SWLGLKT   86 (239)
Q Consensus        80 t~l~~a~   86 (239)
                      ||+++|.
T Consensus       271 TpLh~A~  277 (477)
T PHA02878        271 TALHSSI  277 (477)
T ss_pred             CHHHHHc
Confidence            9999984

>PHA02730 ankyrin-like protein; Provisional

Probab=99.53  E-value=1.8e-14  Score=121.27  Aligned_cols=85  Identities=25%  Similarity=0.205  Sum_probs=72.0

Q ss_pred             CcCc-cCCCCCchHHHHHHHhC---CHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcC--CHhHHHHHHhhcC--Ccccc
Q psy12580          2 YYVS-VTDDHGFSPLHWACKEG---HLKLVELLLQRGARVNATNRGDDTPLHLAAAHG--HLDIVRLLAVQNN--QDLTK   73 (239)
Q Consensus         2 ~~v~-~~~~~g~tpl~~a~~~~---~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g--~~~~v~~Ll~~~~--~~~~~   73 (239)
                      -++| .+|.+|+||||+|+.++   +.+++++|+++||+++.+|..|+||||+|+..+  +.++|++|+. .|  ++.+.
T Consensus        31 ~~in~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~-~~~~~~~~~  109 (672)
T PHA02730         31 HNLSKHIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLIS-SYSNASNEL  109 (672)
T ss_pred             cchhhhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHh-cCCCCCccc
Confidence            3778 88999999999999997   599999999999999999999999999999976  7999999964 64  45566


Q ss_pred             cccCCCCccccccc
Q psy12580         74 INFKDQSWLGLKTR   87 (239)
Q Consensus        74 ~~~~~~t~l~~a~~   87 (239)
                      .+..+.+++..+..
T Consensus       110 ~~~~~d~~l~~y~~  123 (672)
T PHA02730        110 TSNINDFDLYSYMS  123 (672)
T ss_pred             ccccCCchHHHHHH
Confidence            67667777765444

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.53  E-value=2.4e-14  Score=117.56  Aligned_cols=95  Identities=23%  Similarity=0.327  Sum_probs=84.9

Q ss_pred             CcCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCC-CC
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKD-QS   80 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~-~t   80 (239)
                      .|+|.+|.+|+||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+ +.|++++..+..| .+
T Consensus       126 ad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll-~~ga~~n~~~~~~~~t  204 (413)
T PHA02875        126 ADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLL-DSGANIDYFGKNGCVA  204 (413)
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-hCCCCCCcCCCCCCch
Confidence            478999999999999999999999999999999999999999999999999999999999994 6899999888777 46


Q ss_pred             ccccccccCcccccccc
Q psy12580         81 WLGLKTRSRDATLSRHK   97 (239)
Q Consensus        81 ~l~~a~~~~~~~~~~~~   97 (239)
                      ++++|...+...+.+..
T Consensus       205 ~l~~A~~~~~~~iv~~L  221 (413)
T PHA02875        205 ALCYAIENNKIDIVRLF  221 (413)
T ss_pred             HHHHHHHcCCHHHHHHH
Confidence            77778887776666543

>PHA03095 ankyrin-like protein; Provisional

Probab=99.53  E-value=2.8e-14  Score=119.11  Aligned_cols=84  Identities=31%  Similarity=0.400  Sum_probs=73.9

Q ss_pred             CcCccCCCCCchHHHHHHHhC---CHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcC-CHhHHHHHHhhcCCcccccccC
Q psy12580          2 YYVSVTDDHGFSPLHWACKEG---HLKLVELLLQRGARVNATNRGDDTPLHLAAAHG-HLDIVRLLAVQNNQDLTKINFK   77 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~---~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g-~~~~v~~Ll~~~~~~~~~~~~~   77 (239)
                      .|||.+|..|.||||+|+..+   +.+++++|++.|+++|.++..|+||||+|+..| +.+++++| .+.|++++..+..
T Consensus        38 a~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lL-l~~ga~in~~~~~  116 (471)
T PHA03095         38 ADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLL-IKAGADVNAKDKV  116 (471)
T ss_pred             CCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHH-HHcCCCCCCCCCC
Confidence            478888899999999999888   899999999999999999999999999999988 58888888 4588899999988


Q ss_pred             CCCcccccc
Q psy12580         78 DQSWLGLKT   86 (239)
Q Consensus        78 ~~t~l~~a~   86 (239)
                      |.||+++|.
T Consensus       117 g~tpLh~a~  125 (471)
T PHA03095        117 GRTPLHVYL  125 (471)
T ss_pred             CCCHHHHHh
Confidence            999998877

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.52  E-value=2.1e-14  Score=122.95  Aligned_cols=83  Identities=16%  Similarity=0.217  Sum_probs=56.6

Q ss_pred             cCccCCCCCchHHHHHHHhCC--HHHHHHHHHCCCCCCccCCCCCCHHHHH-----------------------------
Q psy12580          3 YVSVTDDHGFSPLHWACKEGH--LKLVELLLQRGARVNATNRGDDTPLHLA-----------------------------   51 (239)
Q Consensus         3 ~v~~~~~~g~tpl~~a~~~~~--~~~~~~ll~~g~~~~~~~~~g~t~l~~a-----------------------------   51 (239)
                      |||.+|.+|+||||+|+..|+  .+++++|++.||++|.+|..|+||||.|                             
T Consensus       204 DVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~  283 (764)
T PHA02716        204 NVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPM  283 (764)
T ss_pred             CCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchh
Confidence            667777777777777777764  3677777777777777777777777754                             


Q ss_pred             --------HHcCCHhHHHHHHhhcCCcccccccCCCCcccccc
Q psy12580         52 --------AAHGHLDIVRLLAVQNNQDLTKINFKDQSWLGLKT   86 (239)
Q Consensus        52 --------~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~   86 (239)
                              +..|+.+++++|+ +.|++++..+..|.||+++|.
T Consensus       284 ~L~~~i~AA~~g~leiVklLL-e~GAdIN~kD~~G~TPLH~Aa  325 (764)
T PHA02716        284 ILHSYITLARNIDISVVYSFL-QPGVKLHYKDSAGRTCLHQYI  325 (764)
T ss_pred             hhHHHHHHHHcCCHHHHHHHH-hCCCceeccCCCCCCHHHHHH
Confidence                    2335566666663 467777777777777777543

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.52  E-value=8.1e-14  Score=99.86  Aligned_cols=77  Identities=19%  Similarity=0.201  Sum_probs=69.6

Q ss_pred             CcCccCC-CCCchHHHHHHHhCCHHHHHHHHH-CCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCC
Q psy12580          2 YYVSVTD-DHGFSPLHWACKEGHLKLVELLLQ-RGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQ   79 (239)
Q Consensus         2 ~~v~~~~-~~g~tpl~~a~~~~~~~~~~~ll~-~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~   79 (239)
                      .++|.+| ..|+||||+|+..++.+++++|++ .|++++.++..|.||||+|+..++.+++++|+ +.+++++..+..|.
T Consensus        84 adin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll-~~ga~~~~~~~~~~  162 (166)
T PHA02743         84 ADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILR-ANGAVCDDPLSIGL  162 (166)
T ss_pred             CCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCCcccCCc
Confidence            4789998 589999999999999999999995 79999999999999999999999999999994 58888887776654

>KOG0512|consensus

Probab=99.51  E-value=1.5e-14  Score=99.57  Aligned_cols=88  Identities=32%  Similarity=0.430  Sum_probs=78.5

Q ss_pred             CcCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCC-HhHHHHHHhhcCCcccccccCCCC
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGH-LDIVRLLAVQNNQDLTKINFKDQS   80 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~-~~~v~~Ll~~~~~~~~~~~~~~~t   80 (239)
                      .|++++...||||||-||+.++.+++.+|+++|+|||++.....||||+|+...+ ...+.+|+.....+....+..+.|
T Consensus       121 An~~a~T~~GWTPLhSAckWnN~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eet  200 (228)
T KOG0512|consen  121 ANKEAKTNEGWTPLHSACKWNNFEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEET  200 (228)
T ss_pred             CCcccccccCccchhhhhcccchhHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccch
Confidence            4788999999999999999999999999999999999999999999999997644 667788877778888888999999


Q ss_pred             ccccccccC
Q psy12580         81 WLGLKTRSR   89 (239)
Q Consensus        81 ~l~~a~~~~   89 (239)
                      ++..|.+.+
T Consensus       201 a~~iARRT~  209 (228)
T KOG0512|consen  201 AFDIARRTS  209 (228)
T ss_pred             HHHHHHHhh
Confidence            998887764

>KOG0508|consensus

Probab=99.50  E-value=1.1e-14  Score=114.68  Aligned_cols=94  Identities=29%  Similarity=0.418  Sum_probs=86.5

Q ss_pred             cCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCcc
Q psy12580          3 YVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWL   82 (239)
Q Consensus         3 ~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l   82 (239)
                      +||-......|||-.||.-|+.++|++|+++|+|+++.++.|+|.||+||..||.+++++|+ +.|+|++..+..|.|++
T Consensus       109 ~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLl-e~gADvn~ks~kGNTAL  187 (615)
T KOG0508|consen  109 SVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLL-EQGADVNAKSYKGNTAL  187 (615)
T ss_pred             ccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHH-HhCCCcchhcccCchHH
Confidence            67878888889999999999999999999999999999999999999999999999999994 69999999999999999


Q ss_pred             ccccccCcccccccc
Q psy12580         83 GLKTRSRDATLSRHK   97 (239)
Q Consensus        83 ~~a~~~~~~~~~~~~   97 (239)
                      +.+..+++..+.+..
T Consensus       188 H~caEsG~vdivq~L  202 (615)
T KOG0508|consen  188 HDCAESGSVDIVQLL  202 (615)
T ss_pred             HhhhhcccHHHHHHH
Confidence            999988887766643

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.50  E-value=6.3e-14  Score=115.76  Aligned_cols=88  Identities=26%  Similarity=0.407  Sum_probs=78.8

Q ss_pred             CcCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCc
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSW   81 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (239)
                      .++|.+|.+|.||||+|+..++.+++++|++.|++++..+..|.||||.|+..|+.+++++|+ +.+++++..+..|.||
T Consensus       148 ad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll-~~g~~i~~~~~~g~Tp  226 (434)
T PHA02874        148 ADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLI-DHGNHIMNKCKNGFTP  226 (434)
T ss_pred             CCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-hCCCCCcCCCCCCCCH
Confidence            478899999999999999999999999999999999999999999999999999999999995 5888888888888888


Q ss_pred             cccccccCc
Q psy12580         82 LGLKTRSRD   90 (239)
Q Consensus        82 l~~a~~~~~   90 (239)
                      ++.|...+.
T Consensus       227 L~~A~~~~~  235 (434)
T PHA02874        227 LHNAIIHNR  235 (434)
T ss_pred             HHHHHHCCh
Confidence            887765443

>PHA02798 ankyrin-like protein; Provisional

Probab=99.50  E-value=4.5e-14  Score=118.21  Aligned_cols=88  Identities=25%  Similarity=0.358  Sum_probs=76.1

Q ss_pred             CcCccCCCCCchHHHHHHHh-----CCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcC---CHhHHHHHHhhcCCcccc
Q psy12580          2 YYVSVTDDHGFSPLHWACKE-----GHLKLVELLLQRGARVNATNRGDDTPLHLAAAHG---HLDIVRLLAVQNNQDLTK   73 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~-----~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g---~~~~v~~Ll~~~~~~~~~   73 (239)
                      .|||.+|..|.||||+|+.+     ++.+++++|+++||++|.+|..|+||||+|+..+   +.+++++|+ +.|++++.
T Consensus        62 advn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll-~~Gadvn~  140 (489)
T PHA02798         62 ANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMI-ENGADTTL  140 (489)
T ss_pred             CCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHH-HcCCCccc
Confidence            47889999999999988754     6789999999999999999999999999999875   678999884 58999999


Q ss_pred             cccCCCCccccccccCc
Q psy12580         74 INFKDQSWLGLKTRSRD   90 (239)
Q Consensus        74 ~~~~~~t~l~~a~~~~~   90 (239)
                      .+..|.||++++...+.
T Consensus       141 ~d~~g~tpL~~a~~~~~  157 (489)
T PHA02798        141 LDKDGFTMLQVYLQSNH  157 (489)
T ss_pred             cCCCCCcHHHHHHHcCC
Confidence            99999999988777665

>PHA02795 ankyrin-like protein; Provisional

Probab=99.49  E-value=9.6e-14  Score=111.72  Aligned_cols=81  Identities=16%  Similarity=0.160  Sum_probs=72.5

Q ss_pred             CCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCcccccccc
Q psy12580          9 DHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWLGLKTRS   88 (239)
Q Consensus         9 ~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~   88 (239)
                      ..|.||+|.|+.+++.+++++|+++||++|.+|..|+||||+|+..|+.+++++|+ +.|++++..+..|.||+++|...
T Consensus       186 ~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL-~~GAdIN~~d~~G~TpLh~Aa~~  264 (437)
T PHA02795        186 IIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLL-ENGANVNAVMSNGYTCLDVAVDR  264 (437)
T ss_pred             hhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHH-HCCCCCCCcCCCCCCHHHHHHHc
Confidence            45789999999999999999999999999999999999999999999999999995 68999999999999999988876


Q ss_pred             Cc
Q psy12580         89 RD   90 (239)
Q Consensus        89 ~~   90 (239)
                      +.
T Consensus       265 g~  266 (437)
T PHA02795        265 GS  266 (437)
T ss_pred             CC
Confidence            63

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.47  E-value=8e-14  Score=116.68  Aligned_cols=92  Identities=24%  Similarity=0.447  Sum_probs=51.4

Q ss_pred             cCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCC------CCHHHHHHHcCC--HhHHHHHHhhcCCccccc
Q psy12580          3 YVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGD------DTPLHLAAAHGH--LDIVRLLAVQNNQDLTKI   74 (239)
Q Consensus         3 ~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g------~t~l~~a~~~g~--~~~v~~Ll~~~~~~~~~~   74 (239)
                      ++|.+|..|.||||+|+..|+.+++++|++.|++++..+..|      .||||.|+..|+  .+++++|+ +.|++++..
T Consensus       168 din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll-~~g~din~~  246 (480)
T PHA03100        168 DINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLL-SYGVPINIK  246 (480)
T ss_pred             CcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHH-HcCCCCCCC
Confidence            455555556666666665555555555555555555555555      555555555555  55555553 345555555


Q ss_pred             ccCCCCccccccccCcccccc
Q psy12580         75 NFKDQSWLGLKTRSRDATLSR   95 (239)
Q Consensus        75 ~~~~~t~l~~a~~~~~~~~~~   95 (239)
                      +..|.||+++|...+...+.+
T Consensus       247 d~~g~TpL~~A~~~~~~~iv~  267 (480)
T PHA03100        247 DVYGFTPLHYAVYNNNPEFVK  267 (480)
T ss_pred             CCCCCCHHHHHHHcCCHHHHH
Confidence            566666666665555544443

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.47  E-value=1.4e-13  Score=118.04  Aligned_cols=83  Identities=19%  Similarity=0.207  Sum_probs=75.0

Q ss_pred             CcCccC-CCCCchHHHHHHH--hCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCC--HhHHHHHHhhcCCccccccc
Q psy12580          2 YYVSVT-DDHGFSPLHWACK--EGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGH--LDIVRLLAVQNNQDLTKINF   76 (239)
Q Consensus         2 ~~v~~~-~~~g~tpl~~a~~--~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~--~~~v~~Ll~~~~~~~~~~~~   76 (239)
                      .|+|.+ |..|+||||+|+.  .++.+++++|++.|+++|.+|..|.||||+|+..|+  .++|++|+ +.|++++..+.
T Consensus       167 ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLL-e~GADVN~kD~  245 (764)
T PHA02716        167 VNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKII-ELGGDMDMKCV  245 (764)
T ss_pred             CCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-HcCCCCCCCCC
Confidence            478888 8999999999864  467899999999999999999999999999999996  48999995 69999999999


Q ss_pred             CCCCccccc
Q psy12580         77 KDQSWLGLK   85 (239)
Q Consensus        77 ~~~t~l~~a   85 (239)
                      .|.||++.+
T Consensus       246 ~G~TPLh~A  254 (764)
T PHA02716        246 NGMSPIMTY  254 (764)
T ss_pred             CCCCHHHHH
Confidence            999999865

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.46  E-value=1.5e-13  Score=106.32  Aligned_cols=102  Identities=14%  Similarity=0.080  Sum_probs=81.9

Q ss_pred             CccCCCCCchHHH-HHHHhCCHHHHHHHHHCCCCCCccC----CCCCCHHHHHHHcCCHhHHHHHHhhcCCccccc-ccC
Q psy12580          4 VSVTDDHGFSPLH-WACKEGHLKLVELLLQRGARVNATN----RGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKI-NFK   77 (239)
Q Consensus         4 v~~~~~~g~tpl~-~a~~~~~~~~~~~ll~~g~~~~~~~----~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~-~~~   77 (239)
                      +-.+|.+|+||++ +|+..++.+++++|++.||++|.++    ..|.||||+|+..++.+++++|+ +.|++++.. +..
T Consensus        25 ~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL-~~GADVN~~~~~~  103 (300)
T PHA02884         25 IKKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLI-RYGADVNRYAEEA  103 (300)
T ss_pred             hhccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCcCcccCCC
Confidence            4568888888665 5556789999999999999999974    68999999999999999999995 699999985 567


Q ss_pred             CCCccccccccCccccccccCCCCCCCcc
Q psy12580         78 DQSWLGLKTRSRDATLSRHKGISLNDLSL  106 (239)
Q Consensus        78 ~~t~l~~a~~~~~~~~~~~~~~~~~~~~~  106 (239)
                      |.||++.|...+.............+...
T Consensus       104 g~TpLh~Aa~~~~~eivklLL~~GAdin~  132 (300)
T PHA02884        104 KITPLYISVLHGCLKCLEILLSYGADINI  132 (300)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence            99999999888777665544333333333

>PHA02946 ankyin-like protein; Provisional

Probab=99.46  E-value=1.5e-13  Score=113.26  Aligned_cols=87  Identities=21%  Similarity=0.343  Sum_probs=68.3

Q ss_pred             CcCccCCCCCchHHHHHHHhC--CHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcC--CHhHHHHHHhhcCCcccccccC
Q psy12580          2 YYVSVTDDHGFSPLHWACKEG--HLKLVELLLQRGARVNATNRGDDTPLHLAAAHG--HLDIVRLLAVQNNQDLTKINFK   77 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~--~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g--~~~~v~~Ll~~~~~~~~~~~~~   77 (239)
                      .++|.+|..|+||||+|+..+  +.+++++|++.|++++.+|..|+||||+|+..|  +.+++++|+  .+++++..|..
T Consensus       164 ad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl--~gadin~~d~~  241 (446)
T PHA02946        164 FEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLL--PSTDVNKQNKF  241 (446)
T ss_pred             ccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHH--cCCCCCCCCCC
Confidence            367788888888888876544  467888888888888888888888888888775  677887774  37888888888


Q ss_pred             CCCccccccccCc
Q psy12580         78 DQSWLGLKTRSRD   90 (239)
Q Consensus        78 ~~t~l~~a~~~~~   90 (239)
                      |.||+++|...+.
T Consensus       242 G~TpLh~A~~~~~  254 (446)
T PHA02946        242 GDSPLTLLIKTLS  254 (446)
T ss_pred             CCCHHHHHHHhCC
Confidence            8888887776654

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.46  E-value=1.1e-13  Score=120.50  Aligned_cols=87  Identities=21%  Similarity=0.277  Sum_probs=65.9

Q ss_pred             CcCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCC-HhHHHHHHhhcCCcccccccCCCC
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGH-LDIVRLLAVQNNQDLTKINFKDQS   80 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~-~~~v~~Ll~~~~~~~~~~~~~~~t   80 (239)
                      .++|.+|..|+||||+|+..++.+++++|++.|++++..+..|.||||+|+..+. ..++++| .+.|++++..+..|.|
T Consensus       366 adin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~L-l~~gadin~~d~~G~T  444 (682)
T PHA02876        366 ANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTL-IDRGANVNSKNKDLST  444 (682)
T ss_pred             CCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHH-HhCCCCCCcCCCCCCh
Confidence            3677788888888888888888888888888888888888888888888776555 4456666 4577888888888888


Q ss_pred             ccccccccC
Q psy12580         81 WLGLKTRSR   89 (239)
Q Consensus        81 ~l~~a~~~~   89 (239)
                      |+++|...+
T Consensus       445 pLh~Aa~~~  453 (682)
T PHA02876        445 PLHYACKKN  453 (682)
T ss_pred             HHHHHHHhC
Confidence            888877644

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.46  E-value=3.7e-13  Score=95.42  Aligned_cols=69  Identities=19%  Similarity=0.251  Sum_probs=62.7

Q ss_pred             CcCccCC-CCCchHHHHHHHhCCHHHHHHHHH-CCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcc
Q psy12580          2 YYVSVTD-DHGFSPLHWACKEGHLKLVELLLQ-RGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDL   71 (239)
Q Consensus         2 ~~v~~~~-~~g~tpl~~a~~~~~~~~~~~ll~-~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~   71 (239)
                      .|+|.+| ..|+||||+|+..++.+++++|++ .|++++.+|..|+||||+|+..|+.+++++|+ +.|++.
T Consensus        82 adin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll-~~ga~~  152 (154)
T PHA02736         82 ADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILR-AKGAQC  152 (154)
T ss_pred             CCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHH-HcCCCC
Confidence            3788898 489999999999999999999998 49999999999999999999999999999995 577654

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.45  E-value=5.2e-14  Score=81.59  Aligned_cols=55  Identities=44%  Similarity=0.561  Sum_probs=32.6

Q ss_pred             HHHCC-CCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCccccc
Q psy12580         30 LLQRG-ARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWLGLK   85 (239)
Q Consensus        30 ll~~g-~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a   85 (239)
                      |+++| +++|.+|..|.||||+|+..|+.+++++|+ +.+.+++..|..|+||+++|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll-~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLL-QNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHH-HCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHH-HCcCCCCCCcCCCCCHHHhC
Confidence            57777 999999999999999999999999999997 89999999999999998765

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.45  E-value=1.5e-13  Score=114.99  Aligned_cols=90  Identities=29%  Similarity=0.435  Sum_probs=52.3

Q ss_pred             cCccCCCCCchHHHHHH--HhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcC--CHhHHHHHHhhcCCcccccccCC
Q psy12580          3 YVSVTDDHGFSPLHWAC--KEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHG--HLDIVRLLAVQNNQDLTKINFKD   78 (239)
Q Consensus         3 ~v~~~~~~g~tpl~~a~--~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g--~~~~v~~Ll~~~~~~~~~~~~~~   78 (239)
                      ++|..|..|.||||+|+  ..|+.+++++|++.|++++..+..|.||||.|+..|  +.+++++|+ +.|++++..+..|
T Consensus        98 ~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll-~~g~din~~d~~g  176 (480)
T PHA03100         98 NVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLI-DKGVDINAKNRYG  176 (480)
T ss_pred             CCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHH-HCCCCcccccCCC
Confidence            44555555666666666  666666666666666666666666666666666655  556666553 3555555555555


Q ss_pred             CCccccccccCcccc
Q psy12580         79 QSWLGLKTRSRDATL   93 (239)
Q Consensus        79 ~t~l~~a~~~~~~~~   93 (239)
                      .||+++|...+...+
T Consensus       177 ~tpL~~A~~~~~~~i  191 (480)
T PHA03100        177 YTPLHIAVEKGNIDV  191 (480)
T ss_pred             CCHHHHHHHhCCHHH
Confidence            666665555554433

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.43  E-value=5.2e-14  Score=124.24  Aligned_cols=78  Identities=17%  Similarity=0.089  Sum_probs=63.9

Q ss_pred             cCC-Cceeeeeeee-------eCCCceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccC
Q psy12580        156 FSH-PNVLPVIGCV-------NSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQY  227 (239)
Q Consensus       156 l~h-~~iv~l~~~~-------~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHr  227 (239)
                      +.| +||.++++++       .....+++++||+ +++|.+++.... ..+++..++.++.||++||+|||+.|  ||||
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~al~~lH~~g--IvHr  104 (793)
T PLN00181         29 LSHIDYVRSLLGSHKEGNLDGLDDDSIVRALECE-DVSLRQWLDNPD-RSVDAFECFHVFRQIVEIVNAAHSQG--IVVH  104 (793)
T ss_pred             hhHHHHHHHhhcccCCccccccccchhhhhhccC-CccHHHHHhccc-ccccHHHHHHHHHHHHHHHHHHHhCC--eeec
Confidence            344 4777777776       2223577888988 559999997643 35999999999999999999999999  9999


Q ss_pred             CCCCccceee
Q psy12580        228 QLNSRHVMVY  237 (239)
Q Consensus       228 dikp~Nill~  237 (239)
                      ||||+||||+
T Consensus       105 DlKP~NiLl~  114 (793)
T PLN00181        105 NVRPSCFVMS  114 (793)
T ss_pred             cCCchhEEEc
Confidence            9999999994

>KOG1240|consensus

Probab=99.43  E-value=4.1e-14  Score=122.20  Aligned_cols=130  Identities=15%  Similarity=0.221  Sum_probs=108.1

Q ss_pred             CCcccccccCCCCCCceeeccCCCceeeeeeeeccCCch--HHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEee
Q psy12580        103 DLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPR--VSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQY  180 (239)
Q Consensus       103 ~~~~~~~ig~g~~g~v~~~~~~~~~~~vk~~~~~~~~~~--~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~  180 (239)
                      ++...+.+|++.|=+|.+|..+.+.+++|++..+.....  .-.+.+.|+. ....++||++.+--+-......|||-+|
T Consensus        24 e~~~~~~LGstRFlKv~r~k~~eG~vVvKVFvk~~p~~sL~~~~qrL~~ik-~~l~~~pn~lPfqk~~~t~kAAylvRqy  102 (1431)
T KOG1240|consen   24 ECHYVENLGSTRFLKVARAKDREGLVVVKVFVKQDPTISLRPFKQRLEEIK-FALMKAPNCLPFQKVLVTDKAAYLVRQY  102 (1431)
T ss_pred             ceeeecccCchhhhhhhhccCCCceEEEEEEeccCCCCCchHHHHHHHHHH-HHhhcCCcccchHHHHHhhHHHHHHHHH
Confidence            678889999999999999999888899999977643221  1122333444 4556899999998887777788999999


Q ss_pred             CCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceeec
Q psy12580        181 MAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVYI  238 (239)
Q Consensus       181 ~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~~  238 (239)
                      ..+ +|++.+..++  .+...+.+-|+.|++.||.-+|..|  |+|+|||.+||||+.
T Consensus       103 vkh-nLyDRlSTRP--FL~~iEKkWiaFQLL~al~qcH~~g--VcHGDIKsENILiTS  155 (1431)
T KOG1240|consen  103 VKH-NLYDRLSTRP--FLVLIEKKWIAFQLLKALSQCHKLG--VCHGDIKSENILITS  155 (1431)
T ss_pred             Hhh-hhhhhhccch--HHHHHHHHHHHHHHHHHHHHHHHcC--ccccccccceEEEee
Confidence            966 9999998877  6888899999999999999999999  999999999999974

>PHA02798 ankyrin-like protein; Provisional

Probab=99.43  E-value=3.9e-13  Score=112.61  Aligned_cols=84  Identities=19%  Similarity=0.305  Sum_probs=74.5

Q ss_pred             CcCccCCCCCchHHHHHHHhC---CHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCC---HhHHHHHHhhcCCcccccc
Q psy12580          2 YYVSVTDDHGFSPLHWACKEG---HLKLVELLLQRGARVNATNRGDDTPLHLAAAHGH---LDIVRLLAVQNNQDLTKIN   75 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~---~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~---~~~v~~Ll~~~~~~~~~~~   75 (239)
                      .|||.+|.+|+||||+|+.++   +.+++++|+++|++++.+|..|.||||+|+..|+   .+++++|+ +.|++++..+
T Consensus       100 adiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll-~~gadin~~~  178 (489)
T PHA02798        100 ADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLL-EKGVDINTHN  178 (489)
T ss_pred             CCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHH-HhCCCccccc
Confidence            479999999999999999876   7899999999999999999999999999999988   99999995 5899998775


Q ss_pred             -cCCCCcccccc
Q psy12580         76 -FKDQSWLGLKT   86 (239)
Q Consensus        76 -~~~~t~l~~a~   86 (239)
                       ..+.|+++.+.
T Consensus       179 ~~~~~t~Lh~~~  190 (489)
T PHA02798        179 NKEKYDTLHCYF  190 (489)
T ss_pred             CcCCCcHHHHHH
Confidence             46778877543

>PHA02795 ankyrin-like protein; Provisional

Probab=99.43  E-value=2.6e-13  Score=109.21  Aligned_cols=108  Identities=11%  Similarity=-0.006  Sum_probs=84.5

Q ss_pred             CcCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccC------CCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccc
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATN------RGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKIN   75 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~------~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~   75 (239)
                      .|||+.  ++.||+|+|+.+++.+++++|+++|++.+...      ..+.||+|.|+..++.+++++|+ +.|++++..+
T Consensus       142 ADIn~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LI-s~GADIN~kD  218 (437)
T PHA02795        142 AVIYKI--ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCI-PYIEDINQLD  218 (437)
T ss_pred             CCCCCC--CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHH-hCcCCcCcCC
Confidence            367764  55899999999999999999999998543332      45889999999999999999995 5899999999


Q ss_pred             cCCCCccccccccCccccccccCCCCCCCcccccccC
Q psy12580         76 FKDQSWLGLKTRSRDATLSRHKGISLNDLSLHTKISS  112 (239)
Q Consensus        76 ~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ig~  112 (239)
                      ..|.||+++|...++..+.+..-....++...+.-|.
T Consensus       219 ~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~  255 (437)
T PHA02795        219 AGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGY  255 (437)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCC
Confidence            9999999999988887776654434444444443343

>KOG0515|consensus

Probab=99.42  E-value=2.7e-13  Score=108.20  Aligned_cols=113  Identities=22%  Similarity=0.234  Sum_probs=82.4

Q ss_pred             CcCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCccc-ccccCCCC
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLT-KINFKDQS   80 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~-~~~~~~~t   80 (239)
                      =|+...|+.|-||||-|+..||.+||++|++.|++||+.|..||||||.|+..++..+++.|.. .|+-+- .+-.+..|
T Consensus       574 ~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ckqLVe-~GaavfAsTlSDmeT  652 (752)
T KOG0515|consen  574 TDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCKQLVE-SGAAVFASTLSDMET  652 (752)
T ss_pred             cCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHHHHHh-ccceEEeeecccccc
Confidence            3677889999999999999999999999999999999999999999999999999999999965 555544 44445566


Q ss_pred             ccccccccC--ccccccccCCCCCCCcccccccCCCCCCceee
Q psy12580         81 WLGLKTRSR--DATLSRHKGISLNDLSLHTKISSGPNGDTWRG  121 (239)
Q Consensus        81 ~l~~a~~~~--~~~~~~~~~~~~~~~~~~~~ig~g~~g~v~~~  121 (239)
                      +..-.....  ....+++.      +.+.+..|.-..|.||..
T Consensus       653 a~eKCee~eeGY~~CsqyL------~~vqesmG~mN~G~vYAl  689 (752)
T KOG0515|consen  653 AAEKCEEMEEGYDQCSQYL------YGVQESMGSMNKGVVYAL  689 (752)
T ss_pred             hhhhcchhhhhHHHHHHHH------HHHHHhhcccccceeEEe
Confidence            643221111  11111111      234455666666777754

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.42  E-value=7.1e-13  Score=114.18  Aligned_cols=84  Identities=29%  Similarity=0.426  Sum_probs=73.7

Q ss_pred             CcCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhh------cCCcccccc
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQ------NNQDLTKIN   75 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~------~~~~~~~~~   75 (239)
                      .|+|.+|.+|+||||+||.+|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+..      .+++.+..+
T Consensus       106 adin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~ga~~~~~~  185 (664)
T PTZ00322        106 ADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLLSRHSQCHFELGANAKPDS  185 (664)
T ss_pred             CCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHhCCCcccccCCCCCccc
Confidence            47899999999999999999999999999999999999999999999999999999999999642      266677777


Q ss_pred             cCCCCccccc
Q psy12580         76 FKDQSWLGLK   85 (239)
Q Consensus        76 ~~~~t~l~~a   85 (239)
                      ..|.+++...
T Consensus       186 ~~g~~~~~~~  195 (664)
T PTZ00322        186 FTGKPPSLED  195 (664)
T ss_pred             cCCCCccchh
Confidence            7776665543

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.41  E-value=6.2e-13  Score=111.55  Aligned_cols=62  Identities=26%  Similarity=0.473  Sum_probs=38.1

Q ss_pred             cCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHH
Q psy12580          3 YVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLA   64 (239)
Q Consensus         3 ~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll   64 (239)
                      |||.+|..|+||||+|+..++.+++++|++.|+++|.+|..|+||||.|+..|+.++++.|+
T Consensus       248 dvn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~~~iv~~LL  309 (494)
T PHA02989        248 KINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNIDMLNRIL  309 (494)
T ss_pred             CCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            45566666666666666666666666666666666666666666666666666666666553

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.41  E-value=3.7e-13  Score=86.32  Aligned_cols=77  Identities=31%  Similarity=0.566  Sum_probs=69.5

Q ss_pred             HHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCccccccccCccccc
Q psy12580         15 LHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWLGLKTRSRDATLS   94 (239)
Q Consensus        15 l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~   94 (239)
                      ||+||+.++.+++++|++.+++++.    |+||||+|+..|+.+++++|+ +.+.+++..+..|.|++++|...+...+.
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~~   75 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLL-ENGADINSQDKNGNTALHYAAENGNLEIV   75 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHH-HTTTCTT-BSTTSSBHHHHHHHTTHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHH-HhcccccccCCCCCCHHHHHHHcCCHHHH
Confidence            7999999999999999999988888    899999999999999999995 68999999999999999999988876665


Q ss_pred             cc
Q psy12580         95 RH   96 (239)
Q Consensus        95 ~~   96 (239)
                      +.
T Consensus        76 ~~   77 (89)
T PF12796_consen   76 KL   77 (89)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0195|consensus

Probab=99.39  E-value=4.7e-13  Score=99.61  Aligned_cols=78  Identities=35%  Similarity=0.367  Sum_probs=59.4

Q ss_pred             cCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCc
Q psy12580          3 YVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSW   81 (239)
Q Consensus         3 ~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (239)
                      -||+.+....||||+|+.+||.++|+.|++..+|+|+.+..|.||||+||..|...+..-|+ .+|+.++..|..|.||
T Consensus        59 rvn~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgntplhyacfwgydqiaedli-~~ga~v~icnk~g~tp  136 (448)
T KOG0195|consen   59 RVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTPLHYACFWGYDQIAEDLI-SCGAAVNICNKKGMTP  136 (448)
T ss_pred             ccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCCCchhhhhhhcHHHHHHHHH-hccceeeecccCCCCc
Confidence            47888888889999999999999999999888999999999999999999888877776652 2444444444433333

>PHA02917 ankyrin-like protein; Provisional

Probab=99.39  E-value=7.9e-13  Score=113.36  Aligned_cols=89  Identities=17%  Similarity=0.180  Sum_probs=77.4

Q ss_pred             CcCccCCCCCchHHHHH--HHhCCHHHHHHHHHCCCCCCccCCC---C-----------CCHHHHHHH-----------c
Q psy12580          2 YYVSVTDDHGFSPLHWA--CKEGHLKLVELLLQRGARVNATNRG---D-----------DTPLHLAAA-----------H   54 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a--~~~~~~~~~~~ll~~g~~~~~~~~~---g-----------~t~l~~a~~-----------~   54 (239)
                      .|+|.+|.+|+||||+|  +..|+.+++++|+++||++|..|..   |           .||||+|+.           .
T Consensus       127 adin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~  206 (661)
T PHA02917        127 FDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAY  206 (661)
T ss_pred             CCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhccccccccccc
Confidence            58999999999999954  4689999999999999999876542   3           599999986           4


Q ss_pred             CCHhHHHHHHhhcCCcccccccCCCCccccccccCcc
Q psy12580         55 GHLDIVRLLAVQNNQDLTKINFKDQSWLGLKTRSRDA   91 (239)
Q Consensus        55 g~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~   91 (239)
                      ++.+++++|+ +.|++++..+..|.||+++|...++.
T Consensus       207 ~~~eiv~~Li-~~Gadvn~~d~~G~TpLh~A~~~g~~  242 (661)
T PHA02917        207 VRPEVVKCLI-NHGIKPSSIDKNYCTALQYYIKSSHI  242 (661)
T ss_pred             CcHHHHHHHH-HCCCCcccCCCCCCcHHHHHHHcCCC
Confidence            6899999995 69999999999999999999988864

>KOG0510|consensus

Probab=99.38  E-value=4.6e-13  Score=111.96  Aligned_cols=116  Identities=24%  Similarity=0.281  Sum_probs=97.9

Q ss_pred             cCccCCCCCchHHHHHHHhCCHHHHHHHHH-CC-CCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCccc---ccccC
Q psy12580          3 YVSVTDDHGFSPLHWACKEGHLKLVELLLQ-RG-ARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLT---KINFK   77 (239)
Q Consensus         3 ~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~-~g-~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~---~~~~~   77 (239)
                      ++|.+++++.||||.|+..|+.+.|+.|++ .| ...|..|-.|+||||.|+..||..++++|+ +.|+...   ..|.+
T Consensus       298 ~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl-~~GA~~~~~~e~D~d  376 (929)
T KOG0510|consen  298 SINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLL-NKGALFLNMSEADSD  376 (929)
T ss_pred             cccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHH-hcChhhhcccccccC
Confidence            678899999999999999999999999998 54 578889999999999999999999999995 5777665   45889


Q ss_pred             CCCccccccccCccccccccCCCCCCCcccccccCCCCCCce
Q psy12580         78 DQSWLGLKTRSRDATLSRHKGISLNDLSLHTKISSGPNGDTW  119 (239)
Q Consensus        78 ~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ig~g~~g~v~  119 (239)
                      |.|+++.|+..++....+..-....++...++.|..+|+.++
T Consensus       377 g~TaLH~Aa~~g~~~av~~Li~~Ga~I~~~n~~g~SA~~~~~  418 (929)
T KOG0510|consen  377 GNTALHLAAKYGNTSAVQKLISHGADIGVKNKKGKSAFDTRP  418 (929)
T ss_pred             CchhhhHHHHhccHHHHHHHHHcCCceeeccccccccccccc
Confidence            999999999999988888776667777777788888888544

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.38  E-value=1.2e-12  Score=109.81  Aligned_cols=85  Identities=16%  Similarity=0.257  Sum_probs=66.4

Q ss_pred             CcCccCCCCCchHHHHHHHh---CCHHHHHHHHHCCCCC-CccCCCCCCHHHHHHHc--CCHhHHHHHHhhcCCcccc-c
Q psy12580          2 YYVSVTDDHGFSPLHWACKE---GHLKLVELLLQRGARV-NATNRGDDTPLHLAAAH--GHLDIVRLLAVQNNQDLTK-I   74 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~---~~~~~~~~ll~~g~~~-~~~~~~g~t~l~~a~~~--g~~~~v~~Ll~~~~~~~~~-~   74 (239)
                      .|+|.+|.+|+||||.|+..   ++.+++++|+++||++ +.+|..|+||||+|+..  ++.+++++|+ +.|++++. .
T Consensus        99 adin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll-~~Gadi~~~~  177 (494)
T PHA02989         99 ADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILL-SFGVNLFEKT  177 (494)
T ss_pred             CCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHH-HcCCCccccc
Confidence            37888888888888877655   5788888888888888 78888888888887653  5788888884 57888877 5


Q ss_pred             ccCCCCccccccc
Q psy12580         75 NFKDQSWLGLKTR   87 (239)
Q Consensus        75 ~~~~~t~l~~a~~   87 (239)
                      +..|.||++++.+
T Consensus       178 ~~~g~tpL~~a~~  190 (494)
T PHA02989        178 SLYGLTPMNIYLR  190 (494)
T ss_pred             cccCCChHHHHHh
Confidence            6778888776543

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.37  E-value=1.3e-12  Score=113.68  Aligned_cols=86  Identities=27%  Similarity=0.345  Sum_probs=36.3

Q ss_pred             CccCCCCCchHHHHHHHhC-CHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcC-CHhHHHHHHhhcCCcccccccCCCCc
Q psy12580          4 VSVTDDHGFSPLHWACKEG-HLKLVELLLQRGARVNATNRGDDTPLHLAAAHG-HLDIVRLLAVQNNQDLTKINFKDQSW   81 (239)
Q Consensus         4 v~~~~~~g~tpl~~a~~~~-~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g-~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (239)
                      +|.+|.+|+||||+|+..| ..+++++|+..|++++..|..|+||||.|+..+ +.+++.+| .+.|++++..+..|.||
T Consensus       300 in~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lL-l~~gadin~~d~~G~Tp  378 (682)
T PHA02876        300 VNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITL-LELGANVNARDYCDKTP  378 (682)
T ss_pred             CCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHH-HHcCCCCccCCCCCCCH
Confidence            3444444444444444444 234444444444444444444444444444322 23333333 23444444444444444


Q ss_pred             cccccccCc
Q psy12580         82 LGLKTRSRD   90 (239)
Q Consensus        82 l~~a~~~~~   90 (239)
                      +++|...++
T Consensus       379 Lh~Aa~~~~  387 (682)
T PHA02876        379 IHYAAVRNN  387 (682)
T ss_pred             HHHHHHcCC
Confidence            444444443

>KOG4158|consensus

Probab=99.36  E-value=9.8e-13  Score=102.72  Aligned_cols=75  Identities=15%  Similarity=0.278  Sum_probs=65.6

Q ss_pred             CCCceeeeeeeeeC---------------------------CCceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHH
Q psy12580        157 SHPNVLPVIGCVNS---------------------------PPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVD  209 (239)
Q Consensus       157 ~h~~iv~l~~~~~~---------------------------~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~  209 (239)
                      .|||||+++++|.+                           +..+|+||.-+.. +|.+|+..+.   .+.....-+..|
T Consensus       274 ~HPNIvri~~aF~dsv~~lPda~~~YPdalp~R~~p~g~g~~~tlylvMkrY~~-tLr~yl~~~~---~s~r~~~~~laQ  349 (598)
T KOG4158|consen  274 KHPNIVRIQTAFIDSVKVLPDAIERYPDALPARWYPSGAGEPKTLYLVMKRYRQ-TLREYLWTRH---RSYRTGRVILAQ  349 (598)
T ss_pred             CCCCEEeehhhhhhhhccCCchhhhCcccccceecccccCCCceEEEehhcchh-hHHHHHhcCC---CchHHHHHHHHH
Confidence            69999999887743                           1247999999977 9999999876   577788999999


Q ss_pred             HHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        210 VARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       210 i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +++|+.|||.+|  |.|||+|++|||+.
T Consensus       350 lLEav~hL~~hg--vAhRDlKSDNiL~E  375 (598)
T KOG4158|consen  350 LLEAVTHLHKHG--VAHRDLKSDNILLE  375 (598)
T ss_pred             HHHHHHHHHHcc--chhhcccccceEEE
Confidence            999999999999  99999999999985

>cd05151 ChoK Choline Kinase (ChoK)

Probab=99.35  E-value=3.2e-12  Score=92.10  Aligned_cols=115  Identities=11%  Similarity=0.066  Sum_probs=81.4

Q ss_pred             ccccCCCCCCceeeccCCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCc-eeeeeeeeeCCCceEEEEeeCCCCCH
Q psy12580        108 TKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPN-VLPVIGCVNSPPDLVVISQYMAWGSL  186 (239)
Q Consensus       108 ~~ig~g~~g~v~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~-iv~l~~~~~~~~~~~lv~e~~~~gsL  186 (239)
                      +.++.|.++.||++...++.+++|.......   ....+..|+.+++.+.+.+ +.+++.+..  ...++||||+++.++
T Consensus         4 ~~l~~G~~~~vy~~~~~~~~~~lK~~~~~~~---~~~~~~~E~~~l~~l~~~~~~P~~~~~~~--~~~~lv~e~i~G~~l   78 (170)
T cd05151           4 SPLKGGMTNKNYRVEVANKKYVVRIPGNGTE---LLINRENEAENSKLAAEAGIGPKLYYFDP--ETGVLITEFIEGSEL   78 (170)
T ss_pred             eecCCcccCceEEEEECCeEEEEEeCCCCcc---cccCHHHHHHHHHHHHHhCCCCceEEEeC--CCCeEEEEecCCCcc
Confidence            4578899999999998888888888644321   1123567888888875443 445555443  235799999999877


Q ss_pred             HHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCC---CcccCCCCCccceee
Q psy12580        187 YALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLER---IIPQYQLNSRHVMVY  237 (239)
Q Consensus       187 ~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~---~ivHrdikp~Nill~  237 (239)
                      .+.    .      ........+++++|..||+.+.   .++|+|++|+||+++
T Consensus        79 ~~~----~------~~~~~~~~~l~~~l~~LH~~~~~~~~~~HgD~~~~Nil~~  122 (170)
T cd05151          79 LTE----D------FSDPENLEKIAKLLKKLHSSPLPDLVPCHNDLLPGNFLLD  122 (170)
T ss_pred             ccc----c------ccCHHHHHHHHHHHHHHhCCCCCCceeecCCCCcCcEEEE
Confidence            543    1      1123456789999999999871   149999999999985

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.35  E-value=3.6e-12  Score=95.86  Aligned_cols=93  Identities=32%  Similarity=0.441  Sum_probs=79.1

Q ss_pred             CcCccCCCCCchHHHHHHHhCC-----HHHHHHHHHCCC---CCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccc
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGH-----LKLVELLLQRGA---RVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTK   73 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~-----~~~~~~ll~~g~---~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~   73 (239)
                      .+++.+|.+|.||||+|+..++     .+++++|++.|+   ..+.+|..|.||||+|+..|+.+++.+|+ +.+++++.
T Consensus        97 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll-~~~~~~~~  175 (235)
T COG0666          97 ADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLL-EAGADPNS  175 (235)
T ss_pred             CCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchhHHHHHcCchHHHHHHH-hcCCCCcc
Confidence            4678899999999999999999     899999999999   66666999999999999999999998884 57888888


Q ss_pred             cccCCCCccccccccCcccccc
Q psy12580         74 INFKDQSWLGLKTRSRDATLSR   95 (239)
Q Consensus        74 ~~~~~~t~l~~a~~~~~~~~~~   95 (239)
                      .+..|.|++.++...+...+..
T Consensus       176 ~~~~g~t~l~~a~~~~~~~~~~  197 (235)
T COG0666         176 RNSYGVTALDPAAKNGRIELVK  197 (235)
T ss_pred             cccCCCcchhhhcccchHHHHH
Confidence            8889999998888777665444

>PHA02917 ankyrin-like protein; Provisional

Probab=99.35  E-value=2.5e-12  Score=110.32  Aligned_cols=90  Identities=21%  Similarity=0.278  Sum_probs=77.1

Q ss_pred             cCccCCCCCchHHHHHHHhC-----------------------CHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhH
Q psy12580          3 YVSVTDDHGFSPLHWACKEG-----------------------HLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDI   59 (239)
Q Consensus         3 ~v~~~~~~g~tpl~~a~~~~-----------------------~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~   59 (239)
                      +++.++.+|+||||.||+.+                       ..+++++|+++||++|.+|..|+||||.|+..++.++
T Consensus       388 ~~~~~~~~G~TpL~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~GAdIN~kd~~G~TpLh~Aa~~~~~~~  467 (661)
T PHA02917        388 DAVNHLDDGEIPIGHLCKSNYGCYNFYTYTYKKGLCDMSYACPILSTINICLPYLKDINMIDKRGETLLHKAVRYNKQSL  467 (661)
T ss_pred             CccccCCCCCChhHHHHHhcccchhhhhhhhhhccchhhhhhhhHHHHHHHHHCCCCCCCCCCCCcCHHHHHHHcCCHHH
Confidence            45666778999999987543                       3567899999999999999999999999999999999


Q ss_pred             HHHHHhhcCCcccccccCCCCccccccc-cCcccc
Q psy12580         60 VRLLAVQNNQDLTKINFKDQSWLGLKTR-SRDATL   93 (239)
Q Consensus        60 v~~Ll~~~~~~~~~~~~~~~t~l~~a~~-~~~~~~   93 (239)
                      +++|+ +.|++++..+..|.|++++|.. .....+
T Consensus       468 v~~Ll-~~GAdin~~d~~G~T~L~~A~~~~~~~~i  501 (661)
T PHA02917        468 VSLLL-ESGSDVNIRSNNGYTCIAIAINESRNIEL  501 (661)
T ss_pred             HHHHH-HCcCCCCCCCCCCCCHHHHHHHhCCCHHH
Confidence            99995 6999999999999999999874 444343

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.35  E-value=2.8e-12  Score=113.52  Aligned_cols=83  Identities=34%  Similarity=0.446  Sum_probs=70.4

Q ss_pred             CcCccCCCCCchHHHHHH-------------------------------HhCCHHHHHHHHHCCCCCCccCCCCCCHHHH
Q psy12580          2 YYVSVTDDHGFSPLHWAC-------------------------------KEGHLKLVELLLQRGARVNATNRGDDTPLHL   50 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~-------------------------------~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~   50 (239)
                      .|+|.+|.+|+||||+|+                               ..|+.+++++|+++|+++|.+|..|+||||+
T Consensus       582 adin~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~  661 (823)
T PLN03192        582 CNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQV  661 (823)
T ss_pred             CCCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence            378889999999988555                               4555566777888999999999999999999


Q ss_pred             HHHcCCHhHHHHHHhhcCCcccccccCC-CCccccc
Q psy12580         51 AAAHGHLDIVRLLAVQNNQDLTKINFKD-QSWLGLK   85 (239)
Q Consensus        51 a~~~g~~~~v~~Ll~~~~~~~~~~~~~~-~t~l~~a   85 (239)
                      |+..|+.+++++|+ +.|++++..+..+ .++..++
T Consensus       662 A~~~g~~~iv~~Ll-~~GAdv~~~~~~g~~t~~~l~  696 (823)
T PLN03192        662 AMAEDHVDMVRLLI-MNGADVDKANTDDDFSPTELR  696 (823)
T ss_pred             HHHCCcHHHHHHHH-HcCCCCCCCCCCCCCCHHHHH
Confidence            99999999999995 6999999998887 7776654

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=99.34  E-value=4.4e-12  Score=104.20  Aligned_cols=124  Identities=11%  Similarity=0.097  Sum_probs=79.4

Q ss_pred             ccccCCCCCCceeecc-CCCceeeeeeeeccCCc----------------------------h----------HHHHHHH
Q psy12580        108 TKISSGPNGDTWRGRW-QKNDIVAKILAVRNCTP----------------------------R----------VSRDFNE  148 (239)
Q Consensus       108 ~~ig~g~~g~v~~~~~-~~~~~~vk~~~~~~~~~----------------------------~----------~~~~~~~  148 (239)
                      +.+|+|++|+||+|.. .|..||||+..+.....                            .          .+-.|.+
T Consensus       123 ~plasaSigQVh~A~l~~G~~VaVKv~rp~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~Eldf~~  202 (437)
T TIGR01982       123 KPLAAASIAQVHRARLVDGKEVAVKVLRPGIEKTIAADIALLYRLARIVERLSPDSRRLRPTEVVKEFEKTLRRELDLRR  202 (437)
T ss_pred             cceeeeehhheEEEEecCCCEEEEEeeCCCcHHHHHHHHHHHHHHHHHHHHhCccccccCHHHHHHHHHHHHHHHHCHHH
Confidence            5699999999999998 56778889875431000                            0          0012444


Q ss_pred             HHhHhhhc----CCCceeeeeeee-eCCCceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHH-HhhhhhcCCC
Q psy12580        149 EFPKLRIF----SHPNVLPVIGCV-NSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVAR-GMAFLHSLER  222 (239)
Q Consensus       149 e~~~l~~l----~h~~iv~l~~~~-~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~-~l~~lH~~~~  222 (239)
                      |+..+.++    ++.+-+.+-..+ ......+|||||++|++|.++...... ..   ....++.+++. .+..+|..| 
T Consensus       203 Ea~n~~~~~~~~~~~~~v~vP~v~~~~~~~~vLvmE~i~G~~L~~~~~~~~~-~~---~~~~ia~~~~~~~l~ql~~~g-  277 (437)
T TIGR01982       203 EAANASELGENFKNDPGVYVPEVYWDRTSERVLTMEWIDGIPLSDIAALDEA-GL---DRKALAENLARSFLNQVLRDG-  277 (437)
T ss_pred             HHHHHHHHHHhcCCCCCEEeCCEehhhcCCceEEEEeECCcccccHHHHHhc-CC---CHHHHHHHHHHHHHHHHHhCC-
Confidence            55555444    232222222222 223356899999999999887654221 12   23456666665 467889999 


Q ss_pred             CcccCCCCCccceee
Q psy12580        223 IIPQYQLNSRHVMVY  237 (239)
Q Consensus       223 ~ivHrdikp~Nill~  237 (239)
                       ++|+|++|+||+++
T Consensus       278 -~~H~D~hPgNilv~  291 (437)
T TIGR01982       278 -FFHADLHPGNIFVL  291 (437)
T ss_pred             -ceeCCCCcccEEEC
Confidence             99999999999985

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>KOG1710|consensus

Probab=99.31  E-value=3.2e-12  Score=95.02  Aligned_cols=90  Identities=32%  Similarity=0.377  Sum_probs=81.7

Q ss_pred             cCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCc-cCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCc
Q psy12580          3 YVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNA-TNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSW   81 (239)
Q Consensus         3 ~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~-~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (239)
                      +||.+|..|-|||..|+..|+.++|++|++.|||+|. ++..+.||||+|+..|+.++.++| .+.|+.....|.-|.|+
T Consensus        37 ~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrll-ldaGa~~~~vNsvgrTA  115 (396)
T KOG1710|consen   37 QVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQDVCRLL-LDAGARMYLVNSVGRTA  115 (396)
T ss_pred             hhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCchHHHHH-HhccCccccccchhhhH
Confidence            5899999999999999999999999999999999997 567899999999999999999998 56999999999999999


Q ss_pred             cccccccCcccc
Q psy12580         82 LGLKTRSRDATL   93 (239)
Q Consensus        82 l~~a~~~~~~~~   93 (239)
                      ..+|+-.++...
T Consensus       116 aqmAAFVG~H~C  127 (396)
T KOG1710|consen  116 AQMAAFVGHHEC  127 (396)
T ss_pred             HHHHHHhcchHH
Confidence            988877766543

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=99.31  E-value=2.3e-11  Score=88.63  Aligned_cols=121  Identities=11%  Similarity=0.071  Sum_probs=82.5

Q ss_pred             ccccCCCCCCceeeccC--------CCceeeeeeeeccC-----------C---------chHHHHH----HHHHhHhhh
Q psy12580        108 TKISSGPNGDTWRGRWQ--------KNDIVAKILAVRNC-----------T---------PRVSRDF----NEEFPKLRI  155 (239)
Q Consensus       108 ~~ig~g~~g~v~~~~~~--------~~~~~vk~~~~~~~-----------~---------~~~~~~~----~~e~~~l~~  155 (239)
                      ..||.|.-+.||.|...        +..+|+|+......           +         ....+.+    .+|...|.+
T Consensus         3 g~i~~GKEa~V~~~~~~~~~~~~~~~~~~avKi~r~~~~~Fk~~~~y~~~~~rf~~~~~k~~~~~~~~~wa~kE~r~L~r   82 (197)
T cd05146           3 GCISTGKESVVLHANGGSNETEQVIPTECAIKVFKTTLNEFKNRDKYIKDDYRFKDRFSKLNPRKIIRMWAEKEMHNLKR   82 (197)
T ss_pred             CccccCcceEEEEEecCcccccccCCceEEEEEEeccceeEcChhhhccCCcccccCcCCCCHHHHHHHHHHHHHHHHHH
Confidence            35778888888888653        25677777643210           0         0111222    378999988


Q ss_pred             cC--CCceeeeeeeeeCCCceEEEEeeCCCCCHH-HHhhcCCCcccCHHHHHHHHHHHHHHhhhh-hcCCCCcccCCCCC
Q psy12580        156 FS--HPNVLPVIGCVNSPPDLVVISQYMAWGSLY-ALLHEGAGIVVDFAQALRFAVDVARGMAFL-HSLERIIPQYQLNS  231 (239)
Q Consensus       156 l~--h~~iv~l~~~~~~~~~~~lv~e~~~~gsL~-~~l~~~~~~~~~~~~~~~~~~~i~~~l~~l-H~~~~~ivHrdikp  231 (239)
                      +.  .-++.+.+++    ..-+|||||+.++.+. ..++..   .++..+...+..+++.+|..+ |..|  +||+||+|
T Consensus        83 l~~~Gv~vP~pi~~----~~~~lvME~Ig~~~~~~~~Lkd~---~~~~~~~~~i~~~i~~~l~~l~H~~g--lVHGDLs~  153 (197)
T cd05146          83 MQKAGIPCPEVVVL----KKHVLVMSFIGDDQVPAPKLKDA---KLNDEEMKNAYYQVLSMMKQLYKECN--LVHADLSE  153 (197)
T ss_pred             HHHcCCCCCeEEEe----cCCEEEEEEcCCCCccchhhhcc---ccCHHHHHHHHHHHHHHHHHHHHhCC--eecCCCCH
Confidence            84  3467777765    3468999999765432 223322   355667788899999999998 8999  99999999


Q ss_pred             ccceee
Q psy12580        232 RHVMVY  237 (239)
Q Consensus       232 ~Nill~  237 (239)
                      .|||++
T Consensus       154 ~NIL~~  159 (197)
T cd05146         154 YNMLWH  159 (197)
T ss_pred             HHEEEE
Confidence            999984

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=99.30  E-value=2.6e-12  Score=107.01  Aligned_cols=126  Identities=12%  Similarity=0.122  Sum_probs=76.5

Q ss_pred             CCCcccccccCCCCCCceeeccC--CCceeeeeeeeccC---------------------------Cc-----hHHHH--
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNC---------------------------TP-----RVSRD--  145 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~---------------------------~~-----~~~~~--  145 (239)
                      .+|+. +.+|+|++|+||+|..+  |..||+|+..+...                           ..     +..+.  
T Consensus       120 ~~fd~-~PlasaSiaQVh~A~l~~~G~~VAVKV~rP~i~~~I~~Dl~~l~~~a~~l~~~~~~~~~l~~~~~v~e~~~~l~  198 (537)
T PRK04750        120 DDFDI-KPLASASIAQVHFARLKDNGREVVVKVLRPDILPVIDADLALMYRLARWVERLLPDGRRLKPREVVAEFEKTLH  198 (537)
T ss_pred             HhcCh-hhhcCCCccEEEEEEECCCCCEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHH
Confidence            34554 68999999999999984  67888899865310                           00     11122  


Q ss_pred             ----HHHHHhHhhhcC----CCceeeeeeeeeC-CCceEEEEeeCCCCCHHHHh--hcCCC--cccCHHHHHHHHHHHHH
Q psy12580        146 ----FNEEFPKLRIFS----HPNVLPVIGCVNS-PPDLVVISQYMAWGSLYALL--HEGAG--IVVDFAQALRFAVDVAR  212 (239)
Q Consensus       146 ----~~~e~~~l~~l~----h~~iv~l~~~~~~-~~~~~lv~e~~~~gsL~~~l--~~~~~--~~~~~~~~~~~~~~i~~  212 (239)
                          +.+|+..+.++.    +.+.+.+-.++.+ ....+|||||++|+++.++-  ...+.  ..+....+..++.|+. 
T Consensus       199 ~ElD~~~Ea~N~~~~~~~f~~~~~v~VP~v~~d~st~~VLvmE~i~G~~l~d~~~l~~~g~d~~~la~~~v~~~~~Qif-  277 (537)
T PRK04750        199 DELDLMREAANASQLRRNFEDSDMLYVPEVYWDYCSETVMVMERMYGIPVSDVAALRAAGTDMKLLAERGVEVFFTQVF-  277 (537)
T ss_pred             HhhCHHHHHHHHHHHHHHccCCCCeecceeecccCCCceEEEeeecCccHHhHHHHHhcCCCHHHHHHHHHHHHHHHHH-
Confidence                333443333331    3222333333321 33567999999999998753  22220  1244444555555554 


Q ss_pred             HhhhhhcCCCCcccCCCCCccceee
Q psy12580        213 GMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       213 ~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                            ..|  ++|+|+||.||+++
T Consensus       278 ------~~G--ffHaDpHPGNIlv~  294 (537)
T PRK04750        278 ------RDG--FFHADMHPGNIFVS  294 (537)
T ss_pred             ------hCC--eeeCCCChHHeEEe
Confidence                  468  99999999999986

>PF13606 Ank_3: Ankyrin repeat

Probab=99.29  E-value=4.5e-12  Score=63.03  Aligned_cols=30  Identities=47%  Similarity=0.831  Sum_probs=28.1

Q ss_pred             CCchHHHHHHHhCCHHHHHHHHHCCCCCCc
Q psy12580         10 HGFSPLHWACKEGHLKLVELLLQRGARVNA   39 (239)
Q Consensus        10 ~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~   39 (239)
                      +|+||||+||..|+.+++++|+++|+|+|.
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence            589999999999999999999999999984

>KOG3087|consensus

Probab=99.29  E-value=3.2e-11  Score=85.11  Aligned_cols=129  Identities=9%  Similarity=0.037  Sum_probs=96.2

Q ss_pred             ccccccCCCCCCceeeccCCCceeeeeeeeccCCch------HHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEe
Q psy12580        106 LHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPR------VSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQ  179 (239)
Q Consensus       106 ~~~~ig~g~~g~v~~~~~~~~~~~vk~~~~~~~~~~------~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e  179 (239)
                      ....+.+|+-+.|+++.+.++..++|....+...-.      ...+..+|++.+.++.--.|.-..-++.+...-.|+||
T Consensus        11 ~l~likQGAEArv~~~~~~Ge~~iIK~Rf~K~YRHP~LD~kLtr~Rt~~Ear~l~k~~~~GI~~P~l~~~D~~~~~i~ME   90 (229)
T KOG3087|consen   11 SLELIKQGAEARVPRGSFSGEAAIIKERFSKRYRHPALDQKLTRKRTKQEARLLAKCRALGIPAPRLIFIDTYGGQIYME   90 (229)
T ss_pred             cceeeeccceeeEeeeccCCceeEEeecccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEecCCCeEEEE
Confidence            345678999999999999999888887765543221      23557789999988754343333333444455689999


Q ss_pred             eCCC-CCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCcccee
Q psy12580        180 YMAW-GSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV  236 (239)
Q Consensus       180 ~~~~-gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill  236 (239)
                      |.++ -++.+++..........+....++.+|-+.+.-||..+  |||+||..+||+|
T Consensus        91 ~~~g~~~vk~~i~~~~~~~~~d~~~~~~~~~iG~~igklH~nd--iiHGDLTTSNill  146 (229)
T KOG3087|consen   91 FIDGASTVKDFILSTMEDESEDEGLAELARRIGELIGKLHDND--IIHGDLTTSNILL  146 (229)
T ss_pred             eccchhHHHHHHHHHccCcccchhHHHHHHHHHHHHHHhhhCC--eecccccccceEE
Confidence            9966 48889988755444445555889999999999999999  9999999999996

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.27  E-value=5.8e-11  Score=84.05  Aligned_cols=119  Identities=16%  Similarity=0.108  Sum_probs=89.6

Q ss_pred             ccccCCCCCCceeeccCCCceeeeeeeeccCCchH------HHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEeeC
Q psy12580        108 TKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRV------SRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYM  181 (239)
Q Consensus       108 ~~ig~g~~g~v~~~~~~~~~~~vk~~~~~~~~~~~------~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~  181 (239)
                      ..+++|+-+.++.+.|.+.++++|...++......      ..+..+|++++..+.--.|....-+..+++...|+|||+
T Consensus         2 ~~i~~GAEa~i~~~~~~g~~av~K~Ri~K~YR~p~LD~klrr~Rt~~Earil~~a~~~GV~~P~v~dvD~~~~~I~me~I   81 (204)
T COG3642           2 DLIKQGAEAIIYLTDFLGLPAVVKERIPKRYRHPELDEKLRRERTRREARILAKAREAGVPVPIVYDVDPDNGLIVMEYI   81 (204)
T ss_pred             chhhCCcceeEEeeeccCcceEEEeecCcccCChHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCEEEEEEe
Confidence            35788999999999998888888877665433222      234577999998886544444444445566678999999


Q ss_pred             CCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        182 AWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       182 ~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +|-.|.+++...         ...++..+-.-+.-||..|  |||+||.++||++.
T Consensus        82 ~G~~lkd~l~~~---------~~~~~r~vG~~vg~lH~~g--ivHGDLTtsNiIl~  126 (204)
T COG3642          82 EGELLKDALEEA---------RPDLLREVGRLVGKLHKAG--IVHGDLTTSNIILS  126 (204)
T ss_pred             CChhHHHHHHhc---------chHHHHHHHHHHHHHHhcC--eecCCCccceEEEe
Confidence            998888888764         2456777777788899999  99999999999875

>KOG0590|consensus

Probab=99.27  E-value=2.1e-12  Score=109.40  Aligned_cols=128  Identities=19%  Similarity=0.310  Sum_probs=92.4

Q ss_pred             cccccccCCCCCCceeeccC--CCceeeeeeee---ccCC-chHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEE
Q psy12580        105 SLHTKISSGPNGDTWRGRWQ--KNDIVAKILAV---RNCT-PRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVIS  178 (239)
Q Consensus       105 ~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~---~~~~-~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~  178 (239)
                      .....+|.|++|.++.....  ......|....   .... ......+..|+.+-..+.|||++..+..+.......-.|
T Consensus       321 ~~~~~~g~ga~g~~~~~~~~~~~~~~~~~~~r~~~~~~~s~~~~~~~i~sE~~i~~~l~h~~~~e~l~~~~~~~~~~~~m  400 (601)
T KOG0590|consen  321 KPGRVLGSGAYGSVRIAKRRSDLKSFPEKEFRVRVKPTESERKYNYNITSEFCIGSSLSHPNIIETLDIVQEIDGILQSM  400 (601)
T ss_pred             CccceeeecccCceEEEEecCCCccchhhhhhcccCCcccHHHHhhhhhhheeecccccCCchhhhHHHHhhcccchhhh
Confidence            45567899999966655431  11122222111   1111 111122455666677789999988887777666555669


Q ss_pred             eeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        179 QYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       179 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |||++ +|+.++....  .+....+-.+++|++.|++|+|+.|  |.|||+||+|++++
T Consensus       401 E~~~~-Dlf~~~~~~~--~~~~~e~~c~fKqL~~Gv~y~h~~G--iahrdlK~enll~~  454 (601)
T KOG0590|consen  401 EYCPY-DLFSLVMSNG--KLTPLEADCFFKQLLRGVKYLHSMG--LAHRDLKLENLLVT  454 (601)
T ss_pred             hcccH-HHHHHHhccc--ccchhhhhHHHHHHHHHHHHHHhcC--ceeccCccccEEEe
Confidence            99999 9999999874  5888999999999999999999999  99999999999986

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.27  E-value=2.2e-11  Score=82.74  Aligned_cols=91  Identities=40%  Similarity=0.648  Sum_probs=79.7

Q ss_pred             ccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCcccc
Q psy12580          5 SVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWLGL   84 (239)
Q Consensus         5 ~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~   84 (239)
                      +.+|.+|+||||+|+..++.+++++|++.|++.+..+..|.||+|.|+..+..+++++|+ +.+..++..+..+.+++++
T Consensus         1 ~~~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll-~~~~~~~~~~~~~~~~l~~   79 (126)
T cd00204           1 NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL-EKGADVNARDKDGNTPLHL   79 (126)
T ss_pred             CCcCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHH-HcCCCccccCCCCCCHHHH
Confidence            356788999999999999999999999999999999999999999999999999999995 4777788888888999998


Q ss_pred             ccccCccccccc
Q psy12580         85 KTRSRDATLSRH   96 (239)
Q Consensus        85 a~~~~~~~~~~~   96 (239)
                      +...+...+.+.
T Consensus        80 a~~~~~~~~~~~   91 (126)
T cd00204          80 AARNGNLDVVKL   91 (126)
T ss_pred             HHHcCcHHHHHH
Confidence            888777555543

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PHA02792 ankyrin-like protein; Provisional

Probab=99.27  E-value=1.2e-11  Score=103.59  Aligned_cols=85  Identities=15%  Similarity=0.140  Sum_probs=75.1

Q ss_pred             CcCccCCCCC--chHHHHHHHhCCH---HHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCccccccc
Q psy12580          2 YYVSVTDDHG--FSPLHWACKEGHL---KLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINF   76 (239)
Q Consensus         2 ~~v~~~~~~g--~tpl~~a~~~~~~---~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~   76 (239)
                      .|+|.+|.+|  .||||+|+.....   +++++|++.||++|.+|..|.||||.|+..++.+++++|+ +.|++++..+.
T Consensus       363 ADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLL-s~GADIN~kD~  441 (631)
T PHA02792        363 NVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLI-DNGADINITTK  441 (631)
T ss_pred             CchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcchHHHHHHcCCHHHHHHHH-HCCCCCCCcCC
Confidence            4788888775  6999998877665   4588899999999999999999999999999999999995 58999999999


Q ss_pred             CCCCccccccc
Q psy12580         77 KDQSWLGLKTR   87 (239)
Q Consensus        77 ~~~t~l~~a~~   87 (239)
                      .|.|+++.|..
T Consensus       442 ~G~TpL~~A~~  452 (631)
T PHA02792        442 YGSTCIGICVI  452 (631)
T ss_pred             CCCCHHHHHHH
Confidence            99999998754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	239
3kmw_A	271	Crystal Structure Of The IlkALPHA-Parvin Core Compl		3e-44
3kmu_A	271	Crystal Structure Of The IlkALPHA-Parvin Core Compl		2e-41
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		8e-21
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		9e-21
3p86_A	309	Crystal Structure Of Ctr1 Kinase Domain Mutant D676		2e-16
3ppz_A	309	Crystal Structure Of Ctr1 Kinase Domain In Complex		2e-16
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		1e-13
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		3e-13
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		4e-13
2xee_A	157	Structural Determinants For Improved Thermal Stabil		4e-13
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		4e-13
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		5e-13
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		1e-12
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		2e-12
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		2e-12
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		4e-12
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		4e-12
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-12
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		5e-12
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		1e-11
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-11
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		2e-11
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		3e-11
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		3e-11
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		4e-11
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		4e-11
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		6e-11
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		6e-11
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-10
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-10
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-10
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		3e-10
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		3e-10
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		3e-10
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		4e-10
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		5e-10
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		9e-10
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		1e-09
3omv_A	307	Crystal Structure Of C-Raf (Raf-1) Length = 307		1e-09
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		1e-09
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-09
4fk3_A	292	B-Raf Kinase V600e Oncogenic Mutant In Complex With		3e-09
3c4c_A	280	B-Raf Kinase In Complex With Plx4720 Length = 280		3e-09
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		3e-09
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		3e-09
3og7_A	289	B-Raf Kinase V600e Oncogenic Mutant In Complex With		3e-09
4g9r_A	307	B-Raf V600e Kinase Domain Bound To A Type Ii Dihydr		9e-09
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		9e-09
3d4q_A	307	Pyrazole-Based Inhibitors Of B-Raf Kinase Length =		1e-08
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		1e-08
3so8_A	162	Crystal Structure Of Ankra Length = 162		1e-08
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		2e-08
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		2e-08
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		2e-08
3idp_A	300	B-Raf V600e Kinase Domain In Complex With An Aminoi		2e-08
3ii5_A	306	The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimi		3e-08
2g1t_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		3e-08
3pyy_A	298	Discovery And Characterization Of A Cell-Permeable,		3e-08
2hiw_A	287	Crystal Structure Of Inactive Conformation Abl Kina		3e-08
2f4j_A	287	Structure Of The Kinase Domain Of An Imatinib-Resis		3e-08
2g2f_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		3e-08
2hz0_A	270	Abl Kinase Domain In Complex With Nvp-Aeg082 Length		3e-08
2hyy_A	273	Human Abl Kinase Domain In Complex With Imatinib (S		3e-08
2e2b_A	293	Crystal Structure Of The C-Abl Kinase Domain In Com		3e-08
3qri_A	277	The Crystal Structure Of Human Abl1 Kinase Domain I		4e-08
2hzi_A	277	Abl Kinase Domain In Complex With Pd180970 Length =		4e-08
2y4i_B	319	Ksr2-Mek1 Heterodimer Length = 319		4e-08
2gqg_A	278	X-Ray Crystal Structure Of Dasatinib (Bms-354825) B		4e-08
2fo0_A	495	Organization Of The Sh3-Sh2 Unit In Active And Inac		4e-08
2qoh_A	288	Crystal Structure Of Abl Kinase Bound With Ppy-a Le		4e-08
3dk3_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		4e-08
3oxz_A	284	Crystal Structure Of Abl Kinase Domain Bound With A		4e-08
2xen_A	91	Structural Determinants For Improved Thermal Stabil		5e-08
1opl_A	537	Structural Basis For The Auto-Inhibition Of C-Abl T		5e-08
1fpu_A	293	Crystal Structure Of Abl Kinase Domain In Complex W		5e-08
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		5e-08
3dk6_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		6e-08
4dbn_A	284	Crystal Structure Of The Kinase Domain Of Human B-R		6e-08
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		6e-08
1uwj_A	276	The Complex Of Mutant V599e B-raf And Bay439006 Len		6e-08
2fb8_A	281	Structure Of The B-Raf Kinase Domain Bound To Sb-59		6e-08
3q96_A	282	B-Raf Kinase Domain In Complex With A Tetrahydronap		6e-08
4h58_A	275	Braf In Complex With Compound 3 Length = 275		6e-08
1opk_A	495	Structural Basis For The Auto-Inhibition Of C-Abl T		7e-08
1uwh_A	276	The Complex Of Wild Type B-Raf And Bay439006 Length		7e-08
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		8e-08
2dq7_X	283	Crystal Structure Of Fyn Kinase Domain Complexed Wi		9e-08
3qrj_A	277	The Crystal Structure Of Human Abl1 Kinase Domain T		1e-07
2v7a_A	286	Crystal Structure Of The T315i Abl Mutant In Comple		1e-07
1uoh_A	226	Human Gankyrin Length = 226		1e-07
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		1e-07
2z60_A	288	Crystal Structure Of The T315i Mutant Of Abl Kinase		1e-07
3oy3_A	284	Crystal Structure Of Abl T315i Mutant Kinase Domain		1e-07
3gvu_A	292	The Crystal Structure Of Human Abl2 In Complex With		1e-07
3dk7_A	277	Crystal Structure Of Mutant Abl Kinase Domain In Co		1e-07
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		2e-07
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		3e-07
3s95_A	310	Crystal Structure Of The Human Limk1 Kinase Domain		4e-07
2ptk_A	453	Chicken Src Tyrosine Kinase Length = 453		4e-07
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		7e-07
3mtf_A	301	Crystal Structure Of The Acvr1 Kinase In Complex Wi		1e-06
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		1e-06
1y57_A	452	Structure Of Unphosphorylated C-Src In Complex With		1e-06
1fmk_A	452	Crystal Structure Of Human Tyrosine-Protein Kinase		2e-06
1yi6_A	276	C-Term Tail Segment Of Human Tyrosine Kinase (258-5		2e-06
2oiq_A	286	Crystal Structure Of Chicken C-Src Kinase Domain In		2e-06
2bdf_A	279	Src Kinase In Complex With Inhibitor Ap23451 Length		2e-06
1ksw_A	452	Structure Of Human C-Src Tyrosine Kinase (Thr338gly		2e-06
3geq_A	286	Structural Basis For The Chemical Rescue Of Src Kin		2e-06
2h8h_A	535	Src Kinase In Complex With A Quinazoline Inhibitor		3e-06
3d7u_B	277	Structural Basis For The Recognition Of C-Src By It		3e-06
3oez_A	286	Crystal Structure Of The L317i Mutant Of The Chicke		3e-06
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		3e-06
3dqw_A	286	C-Src Kinase Domain Thr338ile Mutant In Complex Wit		3e-06
2p0c_A	313	Catalytic Domain Of The Proto-Oncogene Tyrosine-Pro		3e-06
3g6h_A	286	Src Thr338ile Inhibited In The Dfg-Asp-Out Conforma		3e-06
3u4w_A	275	Src In Complex With Dna-Templated Macrocyclic Inhib		3e-06
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		3e-06
2qol_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596:y		3e-06
2qok_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		3e-06
3fxx_A	371	Human Epha3 Kinase And Juxtamembrane Region Bound T		4e-06
2qof_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f		4e-06
2qod_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y602f		4e-06
2gsf_A	373	The Human Epha3 Receptor Tyrosine Kinase And Juxtam		4e-06
2qoi_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		4e-06
3cd3_A	377	Crystal Structure Of Phosphorylated Human Feline Sa		4e-06
3svv_A	286	Crystal Structure Of T338c C-Src Covalently Bound T		4e-06
3bkb_A	377	Crystal Structure Of Human Feline Sarcoma Viral Onc		4e-06
2qoc_A	344	Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp		4e-06
3dzq_A	361	Human Epha3 Kinase Domain In Complex With Inhibitor		4e-06
2qoo_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		4e-06
3kul_A	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		4e-06
3kul_B	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		4e-06
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		4e-06
3h9r_A	330	Crystal Structure Of The Kinase Domain Of Type I Ac		6e-06
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		6e-06
4dym_A	301	Crystal Structure Of The Acvr1 Kinase Domain In Com		6e-06
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		7e-06
2hwo_A	286	Crystal Structure Of Src Kinase Domain In Complex W		8e-06
2xyu_A	285	Crystal Structure Of Epha4 Kinase Domain In Complex		8e-06
2y6m_A	291	Crystal Structure Of Epha4 Kinase Domain Length = 2		8e-06
3sxr_A	268	Crystal Structure Of Bmx Non-Receptor Tyrosine Kina		9e-06
2hel_A	306	Crystal Structure Of A Mutant Epha4 Kinase Domain (		9e-06
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		9e-06
1yol_A	283	Crystal Structure Of Src Kinase Domain In Complex W		1e-05
2eva_A	307	Structural Basis For The Interaction Of Tak1 Kinase		1e-05
4aw5_A	291	Complex Of The Ephb4 Kinase Domain With An Oxindole		1e-05
2vwu_A	302	Ephb4 Kinase Domain Inhibitor Complex Length = 302		1e-05
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		1e-05
1yoj_A	283	Crystal Structure Of Src Kinase Domain Length = 283		1e-05
4gs6_A	315	Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxoz		1e-05
3aaa_C	123	Crystal Structure Of Actin Capping Protein In Compl		1e-05
1jpa_A	312	Crystal Structure Of Unphosphorylated Ephb2 Recepto		1e-05
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		1e-05
1myo_A	118	Solution Structure Of Myotrophin, Nmr, 44 Structure		1e-05
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		2e-05
2hen_A	286	Crystal Structure Of The Ephb2 Receptor Kinase Doma		2e-05
2qq7_A	286	Crystal Structure Of Drug Resistant Src Kinase Doma		2e-05
2zv7_A	279	Lyn Tyrosine Kinase Domain, Apo Form Length = 279		2e-05
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		2e-05
1ycs_B	239	P53-53bp2 Complex Length = 239		2e-05
3a4o_X	286	Lyn Kinase Domain Length = 286		2e-05
3my0_A	305	Crystal Structure Of The Acvrl1 (Alk1) Kinase Domai		2e-05
2qon_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		3e-05
2qo7_A	373	Human Epha3 Kinase And Juxtamembrane Region, Dephos		3e-05
2rei_A	318	Kinase Domain Of Human Ephrin Type-a Receptor 7 (ep		4e-05
4hzr_A	277	Crystal Structure Of Ack1 Kinase Domain Length = 27		4e-05
3eqp_B	276	Crystal Structure Of Ack1 With Compound T95 Length		4e-05
4id7_A	273	Ack1 Kinase In Complex With The Inhibitor Cis-3-[8-		4e-05
2qob_A	344	Human Epha3 Kinase Domain, Base Structure Length =		4e-05
1u46_A	291	Crystal Structure Of The Unphosphorylated Kinase Do		4e-05
1u54_A	291	Crystal Structures Of The Phosphorylated And Unphos		4e-05
4ewh_B	275	Co-Crystal Structure Of Ack1 With Inhibitor Length		4e-05
3nyx_A	302	Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-T		4e-05
4hzs_A	341	Crystal Structure Of Ack1 Kinase Domain With C-term		5e-05
2wot_A	306	Alk5 In Complex With 4-((5,6-Dimethyl-2-(2-Pyridyl)		5e-05
3t9t_A	267	Crystal Structure Of Btk Mutant (F435t,K596r) Compl		5e-05
1py5_A	326	Crystal Structure Of Tgf-Beta Receptor I Kinase Wit		6e-05
3tzm_A	309	Tgf-Beta Receptor Type 1 In Complex With Sb431542 L		6e-05
1rw8_A	301	Crystal Structure Of Tgf-Beta Receptor I Kinase Wit		6e-05
1vjy_A	303	Crystal Structure Of A Naphthyridine Inhibitor Of H		6e-05
1b6c_B	342	Crystal Structure Of The Cytoplasmic Domain Of The		7e-05
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		7e-05
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		8e-05
1byg_A	278	Kinase Domain Of Human C-Terminal Src Kinase (Csk)		8e-05
2og8_A	265	Crystal Structure Of Aminoquinazoline 36 Bound To L		8e-05
1ad5_A	438	Src Family Kinase Hck-Amp-Pnp Complex Length = 438		8e-05
3d7u_A	263	Structural Basis For The Recognition Of C-Src By It		8e-05
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		8e-05
2fo1_E	373	Crystal Structure Of The Csl-Notch-Mastermind Terna		8e-05
1qcf_A	454	Crystal Structure Of Hck In Complex With A Src Fami		8e-05
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		8e-05
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		9e-05
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		9e-05
3mpm_A	267	Lck Complexed With A Pyrazolopyrimidine Length = 26		9e-05
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		9e-05
3nz0_A	302	Non-Phosphorylated Tyk2 Kinase With Cmp6 Length = 3		9e-05
1qpd_A	279	Structural Analysis Of The Lymphocyte-specific Kina		9e-05
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		9e-05
2r2p_A	295	Kinase Domain Of Human Ephrin Type-A Receptor 5 (Ep		9e-05
1k9a_A	450	Crystal Structure Analysis Of Full-Length Carboxyl-		1e-04
3bym_A	272	X-Ray Co-Crystal Structure Aminobenzimidazole Triaz		1e-04
2ofv_A	277	Crystal Structure Of Aminoquinazoline 1 Bound To Lc		1e-04
3lck_A	271	The Kinase Domain Of Human Lymphocyte Kinase (Lck),		1e-04
3bys_A	277	Co-Crystal Structure Of Lck And Aminopyrimidine Ami		1e-04
3d7t_A	269	Structural Basis For The Recognition Of C-Src By It		1e-04
4e20_A	290	Structure Of Mouse Tyk-2 Complexed To A 3-Aminoinda		1e-04
2of2_A	271	Crystal Structure Of Furanopyrimidine 8 Bound To Lc		1e-04
4e1z_A	291	Structure Of Mouse Tyk-2 Complexed To A 3-Aminoinda		1e-04
2hk5_A	270	Hck Kinase In Complex With Lck Targetted Inhibitor		1e-04
2zm1_A	285	Crystal Structure Of Imidazo Pyrazin 1 Bound To The		1e-04
2pl0_A	289	Lck Bound To Imatinib Length = 289		1e-04
2ofu_A	273	X-Ray Crystal Structure Of 2-Aminopyrimidine Carbam		1e-04
1qpe_A	279	Structural Analysis Of The Lymphocyte-Specific Kina		1e-04
3kxz_A	287	The Complex Crystal Structure Of Lck With A Probe M		1e-04
1sm2_A	264	Crystal Structure Of The Phosphorylated Interleukin		1e-04
3kmm_A	288	Structure Of Human Lck Kinase With A Small Molecule		1e-04
3v5j_A	266	Crystal Structure Of Interleukin-2 Inducible T-Cell		1e-04
3uim_A	326	Structural Basis For The Impact Of Phosphorylation		1e-04
3dtc_A	271	Crystal Structure Of Mixed-Lineage Kinase Mlk1 Comp		1e-04
2j0k_A	656	Crystal Structure Of A Fragment Of Focal Adhesion K		1e-04
4hct_A	269	Crystal Structure Of Itk In Complex With Compound 5		1e-04
3gu8_A	295	Crystal Structure Of Dapkl93g With N6-Cyclopentylad		1e-04
2j0j_A	656	Crystal Structure Of A Fragment Of Focal Adhesion K		2e-04
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		2e-04
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		2e-04
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		2e-04
2y0a_A	326	Structure Of Dapk1 Construct Residues 1-304 Length		2e-04
2xuu_A	334	Crystal Structure Of A Dap-Kinase 1 Mutant Length =		2e-04
2x0g_A	334	X-ray Structure Of A Dap-kinase Calmodulin Complex		2e-04
2jkk_A	276	Focal Adhesion Kinase Catalytic Domain In Complex W		2e-04
2xzs_A	312	Death Associated Protein Kinase 1 Residues 1-312 Le		2e-04
2w4k_A	302	X-Ray Structure Of A Dap-Kinase 2-302 Length = 302		3e-04
2j0l_A	276	Crystal Structure Of A The Active Conformation Of T		3e-04
2yak_A	285	Structure Of Death-Associated Protein Kinase 1 (Dap		3e-04
3dfc_B	295	Crystal Structure Of A Glycine-Rich Loop Mutant Of		3e-04
2ivt_A	314	Crystal Structure Of Phosphorylated Ret Tyrosine Ki		3e-04
3miy_A	266	X-Ray Crystal Structure Of Itk Complexed With Sunit		3e-04
1p4f_A	293	Death Associated Protein Kinase Catalytic Domain Wi		3e-04
3gu4_A	295	Crystal Structure Of Dapkq23v-Amppnp Length = 295		3e-04
2ivs_A	314	Crystal Structure Of Non-Phosphorylated Ret Tyrosin		3e-04
3f5u_A	295	Crystal Structure Of The Death Associated Protein K		3e-04
3tl8_A	349	The Avrptob-Bak1 Complex Reveals Two Structurally S		3e-04
1wvw_A	278	Crystal Structures Of Kinase Domain Of Dap Kinase I		3e-04
2w4j_A	277	X-Ray Structure Of A Dap-Kinase 2-277 Length = 277		3e-04
1ig1_A	294	1.8a X-Ray Structure Of Ternary Complex Of A Cataly		3e-04
2jkm_A	276	Focal Adhesion Kinase Catalytic Domain In Complex W		3e-04
4ebw_A	304	Structure Of Focal Adhesion Kinase Catalytic Domain		3e-04
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		4e-04
1mp8_A	281	Crystal Structure Of Focal Adhesion Kinase (Fak) Le		4e-04
2ivv_A	314	Crystal Structure Of Phosphorylated Ret Tyrosine Ki		4e-04
2j0m_B	276	Crystal Structure A Two-Chain Complex Between The F		5e-04
2etm_A	281	Crystal Structure Of Focal Adhesion Kinase Domain C		5e-04
3pxk_A	282	Focal Adhesion Kinase Catalytic Domain In Complex W		5e-04
3hra_A	201	Crystal Structure Of Ef0377 An Ankyrin Repeat Prote		6e-04
4f1m_A	287	Crystal Structure Of The G1179s Roco4 Kinase Domain		7e-04
4f1o_A	287	Crystal Structure Of The L1180t Mutant Roco4 Kinase		7e-04
4f0f_A	287	Crystal Structure Of The Roco4 Kinase Domain Bound		7e-04
4h1j_A	293	Crystal Structure Of Pyk2 With The Pyrazole 13a Len		8e-04
3fzo_A	277	Crystal Structure Of Pyk2-Apo, Proline-Rich Tyrosin		9e-04

>pdb|3KMW|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex (Mgatp) Length = 271

Iteration: 1
 Score =  174 bits (442), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 81/146 (55%), Positives = 110/146 (75%), Gaps = 2/146 (1%)
Query: 93  LSRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPK 152
           +++H GI    L+  TK++   +G+ W+GRWQ NDIV K+L VR+ + R SRDFNEE P+
Sbjct: 1   MNKHSGIDFKQLNFLTKLNENHSGELWKGRWQGNDIVVKVLKVRDWSTRKSRDFNEECPR 60
Query: 153 LRIFSHPNVLPVIGCVNSP--PDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDV 210
           LRIFSHPNVLPV+G   SP  P   +I+ +M +GSLY +LHEG   VVD +QA++FA+D+
Sbjct: 61  LRIFSHPNVLPVLGACQSPPAPHPTLITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDM 120
Query: 211 ARGMAFLHSLERIIPQYQLNSRHVMV 236
           ARGMAFLH+LE +IP++ LNSR VM+
Sbjct: 121 ARGMAFLHTLEPLIPRHALNSRSVMI 146

>pdb|3KMU|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex (Apo) Length = 271

Iteration: 1
 Score =  165 bits (417), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 78/145 (53%), Positives = 105/145 (72%), Gaps = 2/145 (1%)
Query: 94  SRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKL 153
           ++H GI    L+  TK++   +G+ W+GRWQ NDIV K+L VR+ + R SRDFNEE P+L
Sbjct: 2   NKHSGIDFKQLNFLTKLNENHSGELWKGRWQGNDIVVKVLKVRDWSTRKSRDFNEECPRL 61
Query: 154 RIFSHPNVLPVIGCVNSP--PDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVA 211
           RIFSHPNVLPV+G   SP  P   +I+ +  +GSLY +LHEG   VVD +QA++FA+D A
Sbjct: 62  RIFSHPNVLPVLGACQSPPAPHPTLITHWXPYGSLYNVLHEGTNFVVDQSQAVKFALDXA 121
Query: 212 RGMAFLHSLERIIPQYQLNSRHVMV 236
           RG AFLH+LE +IP++ LNSR V +
Sbjct: 122 RGXAFLHTLEPLIPRHALNSRSVXI 146

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           ++  ++HG  PLH+AC  G  ++ E L+  GA V+  N+  + P+  A A    +++R  
Sbjct: 98  INAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLR-ELLRER 156
Query: 64  AVQNNQDLTKINFKDQSWLG 83
           A +  Q+L +I +KD  W G
Sbjct: 157 AEKMGQNLNRIPYKDTFWKG 176

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           ++  ++HG  PLH+AC  G  ++ E L+  GA V+  N+  + P+  A A    +++R  
Sbjct: 93  INAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLR-ELLRER 151
Query: 64  AVQNNQDLTKINFKDQSWLG 83
           A +  Q+L +I +KD  W G
Sbjct: 152 AEKMGQNLNRIPYKDTFWKG 171

>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 75/135 (55%), Gaps = 1/135 (0%)
Query: 103 DLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVL 162
           DL++  KI +G  G   R  W  +D+  KIL  ++       +F  E   ++   HPN++
Sbjct: 38  DLNIKEKIGAGSFGTVHRAEWHGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIV 97
Query: 163 PVIGCVNSPPDLVVISQYMAWGSLYALLHE-GAGIVVDFAQALRFAVDVARGMAFLHSLE 221
             +G V  PP+L ++++Y++ GSLY LLH+ GA   +D  + L  A DVA+GM +LH+  
Sbjct: 98  LFMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNRN 157
Query: 222 RIIPQYQLNSRHVMV 236
             I    L S +++V
Sbjct: 158 PPIVHRNLKSPNLLV 172

>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 1/139 (0%)
Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSH 158
           I   DL++  KI +G  G   R  W  +D+  KIL  ++       +F  E   ++   H
Sbjct: 34  IPWCDLNIKEKIGAGSFGTVHRAEWHGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRH 93
Query: 159 PNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHE-GAGIVVDFAQALRFAVDVARGMAFL 217
           PN++  +G V  PP+L ++++Y++ GSLY LLH+ GA   +D  + L  A DVA+GM +L
Sbjct: 94  PNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYL 153
Query: 218 HSLERIIPQYQLNSRHVMV 236
           H+    I    L S +++V
Sbjct: 154 HNRNPPIVHRDLKSPNLLV 172

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/72 (50%), Positives = 52/72 (72%), Gaps = 1/72 (1%)
Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           V+  DD G +PLH A  +GHL++VE+LL+ GA VNA ++  DTPLHLAA +GHL+IV +L
Sbjct: 40  VNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVL 99
Query: 64  AVQNNQDLTKIN 75
            ++N  D+   +
Sbjct: 100 -LKNGADVNATD 110

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 34/60 (56%), Positives = 46/60 (76%)
Query: 4  VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
          V+ TD+ G++PLH A   GHL++VE+LL+ GA VNA++    TPLHLAAA GHL+IV +L
Sbjct: 40 VNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVL 99

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 33/60 (55%), Positives = 45/60 (75%)
Query: 4  VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
          V+  D  G++PLH A +EGHL++VE+LL+ GA VNA ++   TPLHLAA  GHL+IV +L
Sbjct: 40 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 99

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 33/60 (55%), Positives = 45/60 (75%)
Query: 4  VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
          V+  D  G++PLH A +EGHL++VE+LL+ GA VNA ++   TPLHLAA  GHL+IV +L
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 87

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 35/59 (59%), Positives = 44/59 (74%)
Query: 5  SVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
          +V D  G++PLH AC  GHLK+VELLLQ  A VN T   +D+PLH AA +GH+DIV+LL
Sbjct: 37 NVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLL 95

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 71.2 bits (173), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 33/60 (55%), Positives = 45/60 (75%)
Query: 4  VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
          V+  D  G++PLH A +EGHL++VE+LL+ GA VNA ++   TPLHLAA  GHL+IV +L
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 87

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/60 (55%), Positives = 44/60 (73%)
Query: 4  VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
          V+ TDD+G +PLH A   G L++VE+LL+ GA VNA++    TPLHLAA  GHL+IV +L
Sbjct: 32 VNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVL 91

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/78 (46%), Positives = 55/78 (70%), Gaps = 4/78 (5%)
Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           V+  D +G +PLH A + GHL++V+LLL+ GA VNA ++   TPLHLAA +GHL++V+LL
Sbjct: 28  VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 87
Query: 64  AVQNNQDLTKINFKDQSW 81
            ++   D   +N KD++ 
Sbjct: 88  -LEAGAD---VNAKDKNG 101

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/60 (56%), Positives = 44/60 (73%)
Query: 4  VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
          V+  DD G +PLH A K GHL++VE+LL+ GA VNA++    TPLHLAA  GHL+IV +L
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVL 99

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/60 (56%), Positives = 44/60 (73%)
Query: 4  VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
          V+  DD G +PLH A K GHL++VE+LL+ GA VNA++    TPLHLAA  GHL+IV +L
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVL 99

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 32/60 (53%), Positives = 46/60 (76%)
Query: 4  VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
          V+  D +G +PLH A + GHL++V+LLL+ GA VNA ++   TPLHLAA +GHL++V+LL
Sbjct: 28 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 87

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 67.8 bits (164), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 31/60 (51%), Positives = 43/60 (71%)
Query: 4  VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
          V+ +D  G +PLH+A KEGH ++V+LL+ +GA VNA +    TPLH AA  GH +IV+LL
Sbjct: 30 VNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLL 89

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 67.8 bits (164), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 33/60 (55%), Positives = 42/60 (70%)
Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           V   D +GF+PLH A   GHL++VE+LL+ GA VNA +    TPLHLAA  GHL+IV +L
Sbjct: 73  VDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVL 132

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/60 (56%), Positives = 43/60 (71%)
Query: 4  VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
          V+  DD G +PLH A K GHL++VE+LL+ GA VNA +    TPLHLAA  GHL+IV +L
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVL 99

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/76 (47%), Positives = 52/76 (68%), Gaps = 4/76 (5%)
Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           V+  D  G +PLH A + GHL++VE+LL+ GA VNA++    TPLHLAA  GHL+IV +L
Sbjct: 73  VNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVL 132
Query: 64  AVQNNQDLTKINFKDQ 79
            ++N  D   +N +D+
Sbjct: 133 -LKNGAD---VNAQDK 144

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/60 (53%), Positives = 43/60 (71%)
Query: 4  VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
          V+  D +G +PLH A + GHL++VE+LL+ GA VNA +    TPLHLAA  GHL+IV +L
Sbjct: 40 VNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVL 99

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/60 (55%), Positives = 42/60 (70%)
Query: 4  VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
          V+ TD  G +PLH A   GHL++VE+LL+ GA VNA +    TPLHLAA  GHL+IV +L
Sbjct: 40 VNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVL 99

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/60 (53%), Positives = 43/60 (71%)
Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           V+ +D  G++PLH A   GHL++VE+LL+ GA VNA +    TPLHLAA  GHL+IV +L
Sbjct: 73  VNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVL 132

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 32/60 (53%), Positives = 43/60 (71%)
Query: 4  VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
          V+  D+ G +PLH A + GHL++VE+LL+ GA VNA +    TPLHLAA  GHL+IV +L
Sbjct: 40 VNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVL 99

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 33/60 (55%), Positives = 42/60 (70%)
Query: 4  VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
          V+ TD  G +PLH A   GHL++VE+LL+ GA VNA +    TPLHLAA  GHL+IV +L
Sbjct: 40 VNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVL 99

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 64.3 bits (155), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 36/71 (50%), Positives = 47/71 (66%), Gaps = 4/71 (5%)
Query: 8   DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL---- 63
           D +G +PLH A   GHL++VE+LL+ GA VNA +    TPLHLAA+ GHL+IV +L    
Sbjct: 32  DHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYG 91
Query: 64  AVQNNQDLTKI 74
           A  N +D T I
Sbjct: 92  ADVNAKDATGI 102

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 34/60 (56%), Positives = 44/60 (73%)
Query: 4  VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
          V+ TD  G +PLH A K GHL++VE+LL+ GA VNA +    TPLHLAA +GHL+IV +L
Sbjct: 40 VNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVL 99

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/60 (53%), Positives = 41/60 (68%)
Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           V+  D  G +PLH A   GHL++VE+LL+ GA VNA +    TPLHLAA  GHL+IV +L
Sbjct: 73  VNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVL 132

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           V+  D+ G +PLH A   GHL++VE+LL+ GA V+A++    TPLHLAA  GHL+IV +L
Sbjct: 40  VNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVL 99
Query: 64  AVQNNQDLTKINFKDQSWLGLKTR 87
            ++N  D+  ++    + L L  +
Sbjct: 100 -LKNGADVNAMDSDGMTPLHLAAK 122

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 43/63 (68%)
Query: 4  VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
          V+ +D  G +PLH A + GH ++V+LLL +GA  NA +    TPLHLAA +GH ++V+LL
Sbjct: 30 VNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLL 89
Query: 64 AVQ 66
            Q
Sbjct: 90 LSQ 92

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 41/60 (68%)
Query: 4  VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
          V+  D  G +PLH A    HL++VE+LL+ GA VNA +   +TPLHL A +GHL+IV +L
Sbjct: 40 VNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVL 99

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/79 (46%), Positives = 52/79 (65%), Gaps = 4/79 (5%)
Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           V+  D  G++PLH A   GHL++VE+LL+ GA VNA +    TPLHLAA  GHL+IV +L
Sbjct: 40  VNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVL 99
Query: 64  AVQNNQDLTKINFKDQSWL 82
            ++N  D   +N KD + +
Sbjct: 100 -LKNGAD---VNAKDDNGI 114

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/60 (53%), Positives = 42/60 (70%)
Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           V+  D  G++PLH A   GHL++VE+LL+ GA VNA +    TPLHLAA  GHL+IV +L
Sbjct: 73  VNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVL 132

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 35/81 (43%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           V+  D  G++PLH A   GHL++VE+LL+ GA VNA +    TPL LAA  GHL+IV +L
Sbjct: 40  VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVL 99
Query: 64  AVQNNQDLTKINFKDQSWLGL 84
            ++N  D+   + +  + L L
Sbjct: 100 -LKNGADVNANDMEGHTPLHL 119

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 42/60 (70%)
Query: 4  VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
          V+  D++G +PL+ A   GHL++VE+LL+ GA VNA +    TPLHLAA  GHL+I  +L
Sbjct: 40 VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVL 99

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 60.5 bits (145), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 41/59 (69%)
Query: 5  SVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
          + +D  G +PLH+A + GH ++V+LLL +GA  NA +    TPLH AA +GH +IV+LL
Sbjct: 31 NASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLL 89

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/60 (51%), Positives = 40/60 (66%)
Query: 4  VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
          V+  D  G +PLH A    HL++VE+LL+ GA VNA +    TPLHLAA  GHL+IV +L
Sbjct: 40 VNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVL 99

>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1) Length = 307

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 62/121 (51%), Gaps = 3/121 (2%)
Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSH 158
           I  +++ L T+I SG  G  ++G+W   D+  KIL V + TP   + F  E   LR   H
Sbjct: 33  IEASEVMLSTRIGSGSFGTVYKGKWH-GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRH 91
Query: 159 PNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH 218
            N+L  +G + +  +L +++Q+    SLY  LH        F Q +  A   A+GM +LH
Sbjct: 92  VNILLFMGYM-TKDNLAIVTQWCEGSSLYKHLHVQETKFQMF-QLIDIARQTAQGMDYLH 149
Query: 219 S 219
           +
Sbjct: 150 A 150

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 42/63 (66%)
Query: 4  VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
          V+     G +PLH A K GH ++V+LLL +GA VNA ++  +TP HLA  +GH +IV+LL
Sbjct: 35 VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLL 94
Query: 64 AVQ 66
            +
Sbjct: 95 DAK 97

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 42/60 (70%)
Query: 4  VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
          V+ +D  G +PLH A + GH ++V+LL+ +GA VNA +    TPLH AA +GH ++V+LL
Sbjct: 30 VNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLL 89

>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx3203 Length = 292

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 3/116 (2%)
Query: 104 LSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLP 163
           +++  +I SG  G  ++G+W   D+  K+L V   TP+  + F  E   LR   H N+L 
Sbjct: 26  ITVGQRIGSGSFGTVYKGKWH-GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILL 84
Query: 164 VIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS 219
            +G  ++ P L +++Q+    SLY  LH  +    +  + +  A   ARGM +LH+
Sbjct: 85  FMG-YSTKPQLAIVTQWCEGSSLYHHLH-ASETKFEMKKLIDIARQTARGMDYLHA 138

>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720 Length = 280

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 3/116 (2%)
Query: 104 LSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLP 163
           +++  +I SG  G  ++G+W   D+  K+L V   TP+  + F  E   LR   H N+L 
Sbjct: 14  ITVGQRIGSGSFGTVYKGKWH-GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILL 72
Query: 164 VIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS 219
            +G  ++ P L +++Q+    SLY  LH  +    +  + +  A   ARGM +LH+
Sbjct: 73  FMG-YSTKPQLAIVTQWCEGSSLYHHLH-ASETKFEMKKLIDIARQTARGMDYLHA 126

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/60 (53%), Positives = 40/60 (66%)
Query: 4  VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
          V+  D  G +PLH A   GHL++VE+LL+ GA VNAT     TPLHLAA   HL+IV +L
Sbjct: 40 VNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVL 99

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           V  T   G++PLH A   G++KLV+ LLQ  A VNA  +   +PLH AA  GH DIV LL
Sbjct: 304 VDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLL 363
Query: 64  AVQNNQDLTKINFKDQSWLGLKTR 87
            ++N     +++    + L +  R
Sbjct: 364 -LKNGASPNEVSSDGTTPLAIAKR 386

>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx4032 Length = 289

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 3/116 (2%)
Query: 104 LSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLP 163
           +++  +I SG  G  ++G+W   D+  K+L V   TP+  + F  E   LR   H N+L 
Sbjct: 26  ITVGQRIGSGSFGTVYKGKWH-GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILL 84
Query: 164 VIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS 219
            +G  ++ P L +++Q+    SLY  LH  +    +  + +  A   ARGM +LH+
Sbjct: 85  FMG-YSTAPQLAIVTQWCEGSSLYHHLH-ASETKFEMKKLIDIARQTARGMDYLHA 138

>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii Dihydroquinazoline Inhibitor Length = 307

Iteration: 1
 Score = 57.0 bits (136), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 71/146 (48%), Gaps = 16/146 (10%)
Query: 83  GLKTRSRDATLSRHKG-----ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRN 137
           G + R+R  TL R        I    +++  +I SG  G  ++G+W   D+  K+L V  
Sbjct: 12  GSEDRNRMKTLGRRDSSDDWEIPDGQITVGQRIGSGSFGTVYKGKWH-GDVAVKMLNVTA 70
Query: 138 CTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIV 197
            TP+  + F  E   LR   H N+L  +G  ++ P L +++Q+    SLY  LH     +
Sbjct: 71  PTPQQLQAFKNEVGVLRKTRHVNILLFMG-YSTKPQLAIVTQWCEGSSLYHHLH-----I 124
Query: 198 VDFAQALRFAVDVAR----GMAFLHS 219
           ++    +   +D+AR    GM +LH+
Sbjct: 125 IETKFEMIKLIDIARQTAQGMDYLHA 150

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 57.0 bits (136), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 36/57 (63%)
Query: 7   TDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           TD+ GF+PL WA   G + +VE LLQ GA      +G ++ L LA + G+ DIV++L
Sbjct: 48  TDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 104

>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase Length = 307

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 71/146 (48%), Gaps = 16/146 (10%)
Query: 83  GLKTRSRDATLSRHKG-----ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRN 137
           G + R+R  TL R        I    +++  +I SG  G  ++G+W   D+  K+L V  
Sbjct: 12  GSEDRNRMKTLGRRDSSDDWEIPDGQITVGQRIGSGSFGTVYKGKWH-GDVAVKMLNVTA 70
Query: 138 CTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIV 197
            TP+  + F  E   LR   H N+L  +G  ++ P L +++Q+    SLY  LH     +
Sbjct: 71  PTPQQLQAFKNEVGVLRKTRHVNILLFMG-YSTKPQLAIVTQWCEGSSLYHHLH-----I 124
Query: 198 VDFAQALRFAVDVAR----GMAFLHS 219
           ++    +   +D+AR    GM +LH+
Sbjct: 125 IETKFEMIKLIDIARQTAQGMDYLHA 150

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 36/57 (63%)
Query: 7  TDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
          TD+ GF+PL WA   G + +VE LLQ GA      +G ++ L LA + G+ DIV++L
Sbjct: 32 TDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 88

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 36/57 (63%)
Query: 7  TDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
          TD+ GF+PL WA   G + +VE LLQ GA      +G ++ L LA + G+ DIV++L
Sbjct: 30 TDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 86

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/81 (43%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           V   D  G  PLH AC  GH ++ ELL++ GA VN  +    TPLH AAA G  +I +LL
Sbjct: 68  VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLL 127
Query: 64  AVQNNQDLTKINFKDQSWLGL 84
            +Q+  D TK N    + L L
Sbjct: 128 -LQHGADPTKKNRDGNTPLDL 147

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/81 (43%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           V   D  G  PLH AC  GH ++ ELL++ GA VN  +    TPLH AAA G  +I +LL
Sbjct: 70  VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLL 129
Query: 64  AVQNNQDLTKINFKDQSWLGL 84
            +Q+  D TK N    + L L
Sbjct: 130 -LQHGADPTKKNRDGNTPLDL 149

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/81 (43%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           V   D  G  PLH AC  GH ++ ELL++ GA VN  +    TPLH AAA G  +I +LL
Sbjct: 72  VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLL 131
Query: 64  AVQNNQDLTKINFKDQSWLGL 84
            +Q+  D TK N    + L L
Sbjct: 132 -LQHGADPTKKNRDGNTPLDL 151

>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An Aminoisoquinoline Inhibitor Length = 300

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 69/142 (48%), Gaps = 16/142 (11%)
Query: 87  RSRDATLSRHKG-----ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPR 141
           R+R  TL R        I    +++  +I SG  G  ++G+W   D+  K+L V   TP+
Sbjct: 8   RNRMKTLGRRDSSDDWEIPDGQITVGQRIGSGSFGTVYKGKWH-GDVAVKMLNVTAPTPQ 66
Query: 142 VSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFA 201
             + F  E   LR   H N+L  +G  ++ P L +++Q+    SLY  LH     +++  
Sbjct: 67  QLQAFKNEVGVLRKTRHVNILLFMG-YSTKPQLAIVTQWCEGSSLYHHLH-----IIETK 120
Query: 202 QALRFAVDVAR----GMAFLHS 219
             +   +D+AR    GM +LH+
Sbjct: 121 FEMIKLIDIARQTAQGMDYLHA 142

>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine Inhibitor Length = 306

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 69/142 (48%), Gaps = 16/142 (11%)
Query: 87  RSRDATLSRHKG-----ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPR 141
           R+R  TL R        I    +++  +I SG  G  ++G+W   D+  K+L V   TP+
Sbjct: 15  RNRMKTLGRRDSSDDWEIPDGQITVGQRIGSGSFGTVYKGKWH-GDVAVKMLNVTAPTPQ 73
Query: 142 VSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFA 201
             + F  E   LR   H N+L  +G  ++ P L +++Q+    SLY  LH     +++  
Sbjct: 74  QLQAFKNEVGVLRKTRHVNILLFMG-YSTKPQLAIVTQWCEGSSLYHHLH-----IIETK 127
Query: 202 QALRFAVDVAR----GMAFLHS 219
             +   +D+AR    GM +LH+
Sbjct: 128 FEMIKLIDIARQTAQGMDYLHA 149

>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 102 NDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNV 161
            D+++  K+  G  G+ + G W+K  +   +  ++  T  V  +F +E   ++   HPN+
Sbjct: 15  TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNL 73
Query: 162 LPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH 218
           + ++G     P   +I+++M +G+L   L E     V+    L  A  ++  M +L 
Sbjct: 74  VQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLE 130

>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable, Small-Molecule C- Abl Kinase Activator That Binds To The Myristoyl Binding Site Length = 298

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 102 NDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNV 161
            D+++  K+  G  G+ + G W+K  +   +  ++  T  V  +F +E   ++   HPN+
Sbjct: 26  TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNL 84
Query: 162 LPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH 218
           + ++G     P   +I+++M +G+L   L E     V+    L  A  ++  M +L 
Sbjct: 85  VQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLE 141

>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase Catalytic Domain Complexed With Type Ii Inhibitor Length = 287

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 102 NDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNV 161
            D+++  K+  G  G+ + G W+K  +   +  ++  T  V  +F +E   ++   HPN+
Sbjct: 15  TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNL 73
Query: 162 LPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH 218
           + ++G     P   +I+++M +G+L   L E     V+    L  A  ++  M +L 
Sbjct: 74  VQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLE 130

>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant Abl Mutant In Complex With The Aurora Kinase Inhibitor Vx-680 Length = 287

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 102 NDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNV 161
            D+++  K+  G  G+ + G W+K  +   +  ++  T  V  +F +E   ++   HPN+
Sbjct: 14  TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNL 72
Query: 162 LPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH 218
           + ++G     P   +I+++M +G+L   L E     V+    L  A  ++  M +L 
Sbjct: 73  VQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLE 129

>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 102 NDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNV 161
            D+++  K+  G  G+ + G W+K  +   +  ++  T  V  +F +E   ++   HPN+
Sbjct: 15  TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNL 73
Query: 162 LPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH 218
           + ++G     P   +I+++M +G+L   L E     V+    L  A  ++  M +L 
Sbjct: 74  VQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLE 130

>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082 Length = 270

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/118 (22%), Positives = 56/118 (47%), Gaps = 1/118 (0%)
Query: 102 NDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNV 161
            D+++  K+  G  G+ + G W+K  +   +  ++  T  V  +F +E   ++   HPN+
Sbjct: 13  TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNL 71
Query: 162 LPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS 219
           + ++G     P   +I+++M +G+L   L E     V+    L  A  ++  M +L  
Sbjct: 72  VQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEK 129

>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571, Glivec) Length = 273

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 102 NDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNV 161
            D+++  K+  G  G+ + G W+K  +   +  ++  T  V  +F +E   ++   HPN+
Sbjct: 13  TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNL 71
Query: 162 LPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH 218
           + ++G     P   +I+++M +G+L   L E     V+    L  A  ++  M +L 
Sbjct: 72  VQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLE 128

>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex With Inno-406 Length = 293

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 102 NDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNV 161
            D+++  K+  G  G+ + G W+K  +   +  ++  T  V  +F +E   ++   HPN+
Sbjct: 18  TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNL 76
Query: 162 LPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH 218
           + ++G     P   +I+++M +G+L   L E     V+    L  A  ++  M +L 
Sbjct: 77  VQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLE 133

>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In Complex With Dcc- 2036 Length = 277

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 102 NDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNV 161
            D+++  K+  G  G+ + G W+K  +   +  ++  T  V  +F +E   ++   HPN+
Sbjct: 18  TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNL 76
Query: 162 LPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH 218
           + ++G     P   +I+++M +G+L   L E     V+    L  A  ++  M +L 
Sbjct: 77  VQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLE 133

>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970 Length = 277

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 102 NDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNV 161
            D+++  K+  G  G+ + G W+K  +   +  ++  T  V  +F +E   ++   HPN+
Sbjct: 17  TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNL 75
Query: 162 LPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH 218
           + ++G     P   +I+++M +G+L   L E     V+    L  A  ++  M +L 
Sbjct: 76  VQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLE 132

>pdb|2Y4I|B Chain B, Ksr2-Mek1 Heterodimer Length = 319

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSH 158
           I    L +   I  G  G  + GRW   ++  +++ +        + F  E    R   H
Sbjct: 30  IPFEQLEIGELIGKGRFGQVYHGRWH-GEVAIRLIDIERDNEDQLKAFKREVMAYRQTRH 88
Query: 159 PNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH 218
            NV+  +G   SPP L +I+      +LY+++ + A IV+D  +  + A ++ +GM +LH
Sbjct: 89  ENVVLFMGACMSPPHLAIITSLCKGRTLYSVVRD-AKIVLDVNKTRQIAQEIVKGMGYLH 147
Query: 219 S 219
           +
Sbjct: 148 A 148

>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To Activated Abl Kinase Domain Length = 278

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 102 NDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNV 161
            D+++  K+  G  G+ + G W+K  +   +  ++  T  V  +F +E   ++   HPN+
Sbjct: 18  TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNL 76
Query: 162 LPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH 218
           + ++G     P   +I+++M +G+L   L E     V+    L  A  ++  M +L 
Sbjct: 77  VQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLE 133

>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a Length = 288

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 102 NDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNV 161
            D+++  K+  G  G+ + G W+K  +   +  ++  T  V  +F +E   ++   HPN+
Sbjct: 13  TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNL 71
Query: 162 LPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH 218
           + ++G     P   +I+++M +G+L   L E     V     L  A  ++  M +L 
Sbjct: 72  VQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE 128

>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 102 NDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNV 161
            D+++  K+  G  G+ + G W+K  +   +  ++  T  V  +F +E   ++   HPN+
Sbjct: 11  TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNL 69
Query: 162 LPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH 218
           + ++G     P   +I+++M +G+L   L E     V     L  A  ++  M +L 
Sbjct: 70  VQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE 126

>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A Dfg-Out Inhibitor Ap24534 Length = 284

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 102 NDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNV 161
            D+++  K+  G  G+ + G W+K  +   +  ++  T  V  +F +E   ++   HPN+
Sbjct: 13  TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNL 71
Query: 162 LPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH 218
           + ++G     P   +I+++M +G+L   L E     V     L  A  ++  M +L 
Sbjct: 72  VQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE 128

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 40/60 (66%)
Query: 4  VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
          V+  D  G++PLH A +EGHL++VE+LL+ GA VNA ++   T   ++  +G+ D+  +L
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 87

>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 537

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/116 (23%), Positives = 56/116 (48%), Gaps = 1/116 (0%)
Query: 103 DLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVL 162
           D+++  K+  G  G+ + G W+K  +   +  ++  T  V  +F +E   ++   HPN++
Sbjct: 260 DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNLV 318
Query: 163 PVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH 218
            ++G     P   +I+++M +G+L   L E     V+    L  A  ++  M +L 
Sbjct: 319 QLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLE 374

>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A Small Molecule Inhibitor Length = 293

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 102 NDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNV 161
            D+++  K+  G  G+ + G W+K  +   +  ++  T  V  +F +E   ++   HPN+
Sbjct: 18  TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNL 76
Query: 162 LPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH 218
           + ++G     P   +I+++M +G+L   L E     V     L  A  ++  M +L 
Sbjct: 77  VQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE 133

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 3   YVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRL 62
           +V+  + +G +PLH+A  +   ++  +LL+ GA  +A +  D T +H AAA G+L +V +
Sbjct: 98  HVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHI 157
Query: 63  L----AVQNNQD 70
           L    A  N QD
Sbjct: 158 LLFYKASTNIQD 169

>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 102 NDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNV 161
            D+++  K+  G  G+ + G W+K  +   +  ++  T  V  +F +E   ++   HPN+
Sbjct: 11  TDITMKHKLGGGQFGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNL 69
Query: 162 LPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH 218
           + ++G     P   +I+++M +G+L   L E     V     L  A  ++  M +L 
Sbjct: 70  VQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE 126

>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With A [1, 3]thiazolo[5,4-B]pyridine Derivative Length = 284

Iteration: 1
 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 11/120 (9%)
Query: 104 LSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLP 163
           +++  +I SG  G  ++G+W   D+  K+L V   TP+  + F  E   LR   H N+L 
Sbjct: 15  ITVGQRIGSGSFGTVYKGKWH-GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILL 73
Query: 164 VIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVAR----GMAFLHS 219
            +G  ++ P L +++Q+    SLY  LH     +++    +   +D+AR    GM +LH+
Sbjct: 74  FMG-YSTKPQLAIVTQWCEGSSLYHHLH-----IIETKFEMIKLIDIARQTAQGMDYLHA 127

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 3   YVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRL 62
           +V+  + +G +PLH+A  +   ++  +LL+ GA  +A +  D T +H AAA G+L +V +
Sbjct: 98  HVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHI 157
Query: 63  L----AVQNNQD 70
           L    A  N QD
Sbjct: 158 LLFYKASTNIQD 169

>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006 Length = 276

Iteration: 1
 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 11/120 (9%)
Query: 104 LSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLP 163
           +++  +I SG  G  ++G+W   D+  K+L V   TP+  + F  E   LR   H N+L 
Sbjct: 10  ITVGQRIGSGSFGTVYKGKWH-GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILL 68
Query: 164 VIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVAR----GMAFLHS 219
            +G  ++ P L +++Q+    SLY  LH     +++    +   +D+AR    GM +LH+
Sbjct: 69  FMG-YSTKPQLAIVTQWCEGSSLYHHLH-----IIETKFEMIKLIDIARQTAQGMDYLHA 122

>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885 Length = 281

Iteration: 1
 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 11/120 (9%)
Query: 104 LSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLP 163
           +++  +I SG  G  ++G+W   D+  K+L V   TP+  + F  E   LR   H N+L 
Sbjct: 15  ITVGQRIGSGSFGTVYKGKWH-GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILL 73
Query: 164 VIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVAR----GMAFLHS 219
            +G  ++ P L +++Q+    SLY  LH     +++    +   +D+AR    GM +LH+
Sbjct: 74  FMG-YSTKPQLAIVTQWCEGSSLYHHLH-----IIETKFEMIKLIDIARQTAQGMDYLHA 127

>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A Tetrahydronaphthalene Inhibitor Length = 282

Iteration: 1
 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 11/120 (9%)
Query: 104 LSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLP 163
           +++  +I SG  G  ++G+W   D+  K+L V   TP+  + F  E   LR   H N+L 
Sbjct: 12  ITVGQRIGSGSFGTVYKGKWH-GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILL 70
Query: 164 VIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVAR----GMAFLHS 219
            +G  ++ P L +++Q+    SLY  LH     +++    +   +D+AR    GM +LH+
Sbjct: 71  FMG-YSTKPQLAIVTQWCEGSSLYHHLH-----IIETKFEMIKLIDIARQTAQGMDYLHA 124

>pdb|4H58|A Chain A, Braf In Complex With Compound 3 Length = 275

Iteration: 1
 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 11/120 (9%)
Query: 104 LSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLP 163
           +++  +I SG  G  ++G+W   D+  K+L V   TP+  + F  E   LR   H N+L 
Sbjct: 10  ITVGQRIGSGSFGTVYKGKWH-GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILL 68
Query: 164 VIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVAR----GMAFLHS 219
            +G  ++ P L +++Q+    SLY  LH     +++    +   +D+AR    GM +LH+
Sbjct: 69  FMG-YSTKPQLAIVTQWCEGSSLYHHLH-----IIETKFEMIKLIDIARQTAQGMDYLHA 122

>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 495

Iteration: 1
 Score = 54.3 bits (129), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 27/116 (23%), Positives = 55/116 (47%), Gaps = 1/116 (0%)
Query: 103 DLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVL 162
           D+++  K+  G  G+ + G W+K  +   +  ++  T  V  +F +E   ++   HPN++
Sbjct: 221 DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNLV 279
Query: 163 PVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH 218
            ++G     P   +I+++M +G+L   L E     V     L  A  ++  M +L 
Sbjct: 280 QLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE 335

>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006 Length = 276

Iteration: 1
 Score = 54.3 bits (129), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 11/120 (9%)
Query: 104 LSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLP 163
           +++  +I SG  G  ++G+W   D+  K+L V   TP+  + F  E   LR   H N+L 
Sbjct: 10  ITVGQRIGSGSFGTVYKGKWH-GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILL 68
Query: 164 VIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVAR----GMAFLHS 219
            +G  ++ P L +++Q+    SLY  LH     +++    +   +D+AR    GM +LH+
Sbjct: 69  FMG-YSTAPQLAIVTQWCEGSSLYHHLH-----IIETKFEMIKLIDIARQTAQGMDYLHA 122

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 53.9 bits (128), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 6   VTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL-- 63
            TD  G SPLH A + GH    E+LL+ G   +A  + D TPLH+AA+ GH +IV +L  
Sbjct: 29  TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLK 88
Query: 64  --AVQNNQDLTKIN 75
             A  N +D+ K+ 
Sbjct: 89  HGADVNAKDMLKMT 102

>pdb|2DQ7|X Chain X, Crystal Structure Of Fyn Kinase Domain Complexed With Staurosporine Length = 283

Iteration: 1
 Score = 53.5 bits (127), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 5/126 (3%)
Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFS 157
           I    L L  ++ +G  G+ W G W  N  VA K L     +P     F EE   ++   
Sbjct: 6   IPRESLQLIKRLGNGQFGEVWMGTWNGNTKVAIKTLKPGTMSPE---SFLEEAQIMKKLK 62
Query: 158 HPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
           H  ++ +   V+  P + ++++YM  GSL   L +G G  +     +  A  VA GMA++
Sbjct: 63  HDKLVQLYAVVSEEP-IYIVTEYMNKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYI 121
Query: 218 HSLERI 223
             +  I
Sbjct: 122 ERMNYI 127

>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i Mutant In Complex With Dcc-2036 Length = 277

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 102 NDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNV 161
            D+++  K+  G  G+ + G W+K  +   +  ++  T  V  +F +E   ++   HPN+
Sbjct: 18  TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNL 76
Query: 162 LPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH 218
           + ++G     P   +I ++M +G+L   L E     V+    L  A  ++  M +L 
Sbjct: 77  VQLLGVCTREPPFYIIIEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLE 133

>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With The Inhibitor Pha-739358 Length = 286

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 102 NDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNV 161
            D+++  K+  G  G+ + G W+K  +   +  ++  T  V  +F +E   ++   HPN+
Sbjct: 14  TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNL 72
Query: 162 LPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH 218
           + ++G     P   +I ++M +G+L   L E     V+    L  A  ++  M +L 
Sbjct: 73  VQLLGVCTREPPFYIIIEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLE 129

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           V+  + +G +PLH+A  +   ++  +LL+ GA  +A +  + T +H AAA G+L ++ +L
Sbjct: 99  VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHIL 158
Query: 64  ----AVQNNQD 70
               A  N QD
Sbjct: 159 LYYKASTNIQD 169

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           V+  + +G +PLH+A  +   ++  +LL+ GA  +A +  + T +H AAA G+L ++ +L
Sbjct: 100 VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHIL 159
Query: 64  ----AVQNNQD 70
               A  N QD
Sbjct: 160 LYYKASTNIQD 170

>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound With Ppy-A Length = 288

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 102 NDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNV 161
            D+++  K+  G  G+ + G W+K  +   +  ++  T  V  +F +E   ++   HPN+
Sbjct: 13  TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNL 71
Query: 162 LPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH 218
           + ++G     P   +I ++M +G+L   L E     V     L  A  ++  M +L 
Sbjct: 72  VQLLGVCTREPPFYIIIEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE 128

>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound With A Dfg- Out Inhibitor Ap24589 Length = 284

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 102 NDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNV 161
            D+++  K+  G  G+ + G W+K  +   +  ++  T  V  +F +E   ++   HPN+
Sbjct: 13  TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNL 71
Query: 162 LPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH 218
           + ++G     P   +I ++M +G+L   L E     V     L  A  ++  M +L 
Sbjct: 72  VQLLGVCTREPPFYIIIEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE 128

>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With Gleevec Length = 292

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 102 NDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNV 161
            D+++  K+  G  G+ + G W+K  +   +  ++  T  V  +F +E   ++   HPN+
Sbjct: 32  TDITMKHKLGGGQYGEVYVGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNL 90
Query: 162 LPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH 218
           + ++G     P   ++++YM +G+L   L E     V     L  A  ++  M +L 
Sbjct: 91  VQLLGVCTLEPPFYIVTEYMPYGNLLDYLRECNREEVTAVVLLYMATQISSAMEYLE 147

>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 277

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 102 NDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNV 161
            D+++  K+  G  G+ + G W+K  +   +  ++  T  V  +F +E   ++   HPN+
Sbjct: 11  TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNL 69
Query: 162 LPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH 218
           + ++G     P   +I ++M +G+L   L E     V     L  A  ++  M +L 
Sbjct: 70  VQLLGVCTREPPFYIIIEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE 126

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           V+VT   G SPLH A   G   L+ LLL+ GA   A N     PLHLA   GH  +V+ L
Sbjct: 79  VNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCL 138
Query: 64  ----AVQNNQDLT 72
               A  N +DL+
Sbjct: 139 LDSNAKPNKKDLS 151

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           V   D  G  PLH AC  GH ++ ELLL+ GA VNA +    TPLH AA+   +++  LL
Sbjct: 84  VHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLL 143
Query: 64  AVQNNQDLTKINFKDQSWLGL 84
            + +  D T +N   +S + +
Sbjct: 144 -LSHGADPTLVNCHGKSAVDM 163

>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In Complex With Staurosporine Length = 310

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 142 VSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFA 201
             R F +E   +R   HPNVL  IG +     L  I++Y+  G+L  ++ +       ++
Sbjct: 50  TQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEYIKGGTLRGII-KSMDSQYPWS 108
Query: 202 QALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
           Q + FA D+A GMA+LHS+  I     LNS + +V
Sbjct: 109 QRVSFAKDIASGMAYLHSMNII--HRDLNSHNCLV 141

>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase Length = 453

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 5/126 (3%)
Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFS 157
           I    L L  K+  G  G+ W G W     VA K L   N +P     F +E   ++   
Sbjct: 182 IPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGNMSPEA---FLQEAQVMKKLR 238
Query: 158 HPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
           H  ++ +   V+  P + ++++YM+ GSL   L    G  +   Q +  A  +A GMA++
Sbjct: 239 HEKLVQLYAVVSEEP-IYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYV 297
Query: 218 HSLERI 223
             +  +
Sbjct: 298 ERMNYV 303

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 59/124 (47%), Gaps = 7/124 (5%)
Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           V+  DD G++P+ WA +  H+ LV+LLL +G+ +N  +  ++  LH AA  G +DI  +L
Sbjct: 104 VNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEIL 163
Query: 64  AVQNNQDLTKINFKDQSWLGLKTRSR--DAT---LSRHKGISLNDLSLHTKISSGP-NGD 117
            +    DL  +N    S L +  R    D     LSR   ++L +    T +     N  
Sbjct: 164 -LAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQ 222
Query: 118 TWRG 121
            W  
Sbjct: 223 VWSA 226

>pdb|3MTF|A Chain A, Crystal Structure Of The Acvr1 Kinase In Complex With A 2- Aminopyridine Inhibitor Length = 301

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 55/125 (44%), Gaps = 20/125 (16%)
Query: 103 DLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFS----- 157
           D++L   +  G  G+ WRG WQ  ++  KI +        SRD    F +  +++     
Sbjct: 9   DITLLECVGKGRYGEVWRGSWQGENVAVKIFS--------SRDEKSWFRETELYNTVMLR 60
Query: 158 HPNVLPVIG----CVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARG 213
           H N+L  I       +S   L +I+ Y   GSLY  L       +D    LR  + +A G
Sbjct: 61  HENILGFIASDMTSRHSSTQLWLITHYHEMGSLYDYLQL---TTLDTVSCLRIVLSIASG 117
Query: 214 MAFLH 218
           +A LH
Sbjct: 118 LAHLH 122

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 39/60 (65%)
Query: 4  VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
          V+  D +G +PLH A + GHL++V+LLL+ GA VNA ++   T   ++  +G+ D+  +L
Sbjct: 32 VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 91

>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An Inhibitor Length = 452

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 5/126 (3%)
Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFS 157
           I    L L  K+  G  G+ W G W     VA K L     +P     F +E   ++   
Sbjct: 181 IPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEA---FLQEAQVMKKLR 237
Query: 158 HPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
           H  ++ +   V+  P + ++++YM+ GSL   L    G  +   Q +  A  +A GMA++
Sbjct: 238 HEKLVQLYAVVSEEP-IYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYV 296
Query: 218 HSLERI 223
             +  +
Sbjct: 297 ERMNYV 302

>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src Length = 452

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 5/126 (3%)
Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFS 157
           I    L L  K+  G  G+ W G W     VA K L     +P     F +E   ++   
Sbjct: 181 IPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEA---FLQEAQVMKKLR 237
Query: 158 HPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
           H  ++ +   V+  P + ++++YM+ GSL   L    G  +   Q +  A  +A GMA++
Sbjct: 238 HEKLVQLYAVVSEEP-IYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYV 296
Query: 218 HSLERI 223
             +  +
Sbjct: 297 ERMNYV 302

>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533) Length = 276

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 5/123 (4%)
Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFS 157
           I    L L  K+  G  G+ W G W     VA K L     +P     F +E   ++   
Sbjct: 5   IPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEA---FLQEAQVMKKLR 61
Query: 158 HPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
           H  ++ +   V+  P + ++++YM+ GSL   L    G  +   Q +  A  +A GMA++
Sbjct: 62  HEKLVQLYAVVSEEP-IXIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYV 120
Query: 218 HSL 220
             +
Sbjct: 121 ERM 123

>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In Complex With The Cancer Drug Imatinib. Length = 286

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 5/123 (4%)
Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFS 157
           I    L L  K+  G  G+ W G W     VA K L     +P     F +E   ++   
Sbjct: 15  IPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEA---FLQEAQVMKKLR 71
Query: 158 HPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
           H  ++ +   V+  P + ++++YM+ GSL   L    G  +   Q +  A  +A GMA++
Sbjct: 72  HEKLVQLYAVVSEEP-IYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYV 130
Query: 218 HSL 220
             +
Sbjct: 131 ERM 133

>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451 Length = 279

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 5/123 (4%)
Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFS 157
           I    L L  K+  G  G+ W G W     VA K L     +P     F +E   ++   
Sbjct: 8   IPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEA---FLQEAQVMKKLR 64
Query: 158 HPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
           H  ++ +   V+  P + ++++YM+ GSL   L    G  +   Q +  A  +A GMA++
Sbjct: 65  HEKLVQLYAVVSEEP-IYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYV 123
Query: 218 HSL 220
             +
Sbjct: 124 ERM 126

>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly Mutant) In Complex With N6-Benzyl Adp Length = 452

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 5/126 (3%)
Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFS 157
           I    L L  K+  G  G+ W G W     VA K L     +P     F +E   ++   
Sbjct: 181 IPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEA---FLQEAQVMKKLR 237
Query: 158 HPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
           H  ++ +   V+  P + ++ +YM+ GSL   L    G  +   Q +  A  +A GMA++
Sbjct: 238 HEKLVQLYAVVSEEP-IYIVGEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYV 296
Query: 218 HSLERI 223
             +  +
Sbjct: 297 ERMNYV 302

>pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase Activity Length = 286

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 5/123 (4%)
Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFS 157
           I    L L  K+  G  G+ W G W     VA K L     +P     F +E   ++   
Sbjct: 15  IPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEA---FLQEAQVMKKLR 71
Query: 158 HPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
           H  ++ +   V+  P + ++++YM+ GSL   L    G  +   Q +  A  +A GMA++
Sbjct: 72  HEKLVQLYAVVSEEP-IYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYV 130
Query: 218 HSL 220
             +
Sbjct: 131 ERM 133

>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor Length = 535

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 5/126 (3%)
Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFS 157
           I    L L  K+  G  G+ W G W     VA K L     +P     F +E   ++   
Sbjct: 264 IPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEA---FLQEAQVMKKLR 320
Query: 158 HPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
           H  ++ +   V+  P + ++++YM+ GSL   L    G  +   Q +  A  +A GMA++
Sbjct: 321 HEKLVQLYAVVSEEP-IYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYV 379
Query: 218 HSLERI 223
             +  +
Sbjct: 380 ERMNYV 385

>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 277

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 5/123 (4%)
Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFS 157
           I    L L  K+  G  G+ W G W     VA K L     +P     F +E   ++   
Sbjct: 6   IPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEA---FLQEAQVMKKLR 62
Query: 158 HPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
           H  ++ +   V+  P + ++++YM+ GSL   L    G  +   Q +  A  +A GMA++
Sbjct: 63  HEKLVQLYAVVSEEP-IYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYV 121
Query: 218 HSL 220
             +
Sbjct: 122 ERM 124

>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src Tyrosine Kinase Domain Complexed With Imatinib Length = 286

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 5/123 (4%)
Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFS 157
           I    L L  K+  G  G+ W G W     VA K L     +P     F +E   ++   
Sbjct: 15  IPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEA---FLQEAQVMKKIR 71
Query: 158 HPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
           H  ++ +   V+  P + ++++YM+ GSL   L    G  +   Q +  A  +A GMA++
Sbjct: 72  HEKLVQLYAVVSEEP-IYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYV 130
Query: 218 HSL 220
             +
Sbjct: 131 ERM 133

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 6   VTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL-- 63
           +T DH  SPLH AC  GHL  V++LL+ GA+VN       TPL  A   G  D V LL  
Sbjct: 88  ITADH-VSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQ 146
Query: 64  ---AVQNNQDLT 72
              +VQ   DL 
Sbjct: 147 HGASVQPESDLA 158

>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs Length = 286

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 5/123 (4%)
Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFS 157
           I    L L  K+  G  G+ W G W     VA K L     +P     F +E   ++   
Sbjct: 15  IPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEA---FLQEAQVMKKLR 71
Query: 158 HPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
           H  ++ +   V+  P  +VI +YM+ GSL   L    G  +   Q +  A  +A GMA++
Sbjct: 72  HEKLVQLYAVVSEEPIYIVI-EYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYV 130
Query: 218 HSL 220
             +
Sbjct: 131 ERM 133

>pdb|2P0C|A Chain A, Catalytic Domain Of The Proto-Oncogene Tyrosine-Protein Kina Length = 313

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 14/133 (10%)
Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKND-----IVAKILAVRNCTPRVSRDFNEEFPKL 153
           I  N L L   +  G  G    G  ++ D     +  K + + N + R   +F  E   +
Sbjct: 31  IDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACM 90
Query: 154 RIFSHPNVLPVIG-CVNSP----PDLVVISQYMAWGSLYALL----HEGAGIVVDFAQAL 204
           + FSHPNV+ ++G C+       P  +VI  +M +G L+  L     E     +     L
Sbjct: 91  KDFSHPNVIRLLGVCIEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLL 150
Query: 205 RFAVDVARGMAFL 217
           +F VD+A GM +L
Sbjct: 151 KFMVDIALGMEYL 163

>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation Length = 286

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 5/123 (4%)
Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFS 157
           I    L L  K+  G  G+ W G W     VA K L     +P     F +E   ++   
Sbjct: 15  IPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEA---FLQEAQVMKKLR 71
Query: 158 HPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
           H  ++ +   V+  P  +VI +YM+ GSL   L    G  +   Q +  A  +A GMA++
Sbjct: 72  HEKLVQLYAVVSEEPIYIVI-EYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYV 130
Query: 218 HSL 220
             +
Sbjct: 131 ERM 133

>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor Mc4b Length = 275

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 5/123 (4%)
Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFS 157
           I    L L  K+  G  G+ W G W     VA K L     +P     F +E   ++   
Sbjct: 4   IPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEA---FLQEAQVMKKLR 60
Query: 158 HPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
           H  ++ +   V+  P + ++++YM+ GSL   L    G  +   Q +  A  +A GMA++
Sbjct: 61  HEKLVQLYAVVSEEP-IYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYV 119
Query: 218 HSL 220
             +
Sbjct: 120 ERM 122

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 6   VTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL-- 63
           +T DH  SPLH AC  GHL  V++LL+ GA+VN       TPL  A   G  D V LL  
Sbjct: 32  ITADH-VSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQ 90
Query: 64  ---AVQNNQDLT 72
              +VQ   DL 
Sbjct: 91  HGASVQPESDLA 102

>pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596:y602:s768g Triple Mutant Length = 373

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 14/157 (8%)
Query: 89  RDATLSRH---KGISLNDLSLHTKISSGPNGDTWRGRWQ---KNDIVAKILAVR-NCTPR 141
            D T + H   K +   ++S+   + +G  G+   GR +   K +I   I  ++   T +
Sbjct: 29  EDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEK 88
Query: 142 VSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALL--HEGAGIVVD 199
             RDF  E   +  F HPN++ + G V     ++++++YM  GSL + L  H+    V+ 
Sbjct: 89  QRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQ 148
Query: 200 FAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
               LR    +A GM +L  +  +     L +R++++
Sbjct: 149 LVGMLR---GIASGMKYLSDMGYV--HRDLAARNILI 180

>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:s768a Triple Mutant Length = 373

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 14/157 (8%)
Query: 89  RDATLSRH---KGISLNDLSLHTKISSGPNGDTWRGRWQ---KNDIVAKILAVR-NCTPR 141
            D T + H   K +   ++S+   + +G  G+   GR +   K +I   I  ++   T +
Sbjct: 29  EDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEK 88
Query: 142 VSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALL--HEGAGIVVD 199
             RDF  E   +  F HPN++ + G V     ++++++YM  GSL + L  H+    V+ 
Sbjct: 89  QRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQ 148
Query: 200 FAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
               LR    +A GM +L  +  +     L +R++++
Sbjct: 149 LVGMLR---GIASGMKYLSDMGYV--HRDLAARNILI 180

>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To Substrate Kqwdnye[ptyr]iw Length = 371

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 14/157 (8%)
Query: 89  RDATLSRH---KGISLNDLSLHTKISSGPNGDTWRGRWQ---KNDIVAKILAVR-NCTPR 141
            D T + H   K +   ++S+   + +G  G+   GR +   K +I   I  ++   T +
Sbjct: 27  EDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEK 86
Query: 142 VSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALL--HEGAGIVVD 199
             RDF  E   +  F HPN++ + G V     ++++++YM  GSL + L  H+    V+ 
Sbjct: 87  QRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQ 146
Query: 200 FAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
               LR    +A GM +L  +  +     L +R++++
Sbjct: 147 LVGMLR---GIASGMKYLSDMGYV--HRDLAARNILI 178

>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant Length = 373

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 14/157 (8%)
Query: 89  RDATLSRH---KGISLNDLSLHTKISSGPNGDTWRGRWQ---KNDIVAKILAVR-NCTPR 141
            D T + H   K +   ++S+   + +G  G+   GR +   K +I   I  ++   T +
Sbjct: 29  EDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEK 88
Query: 142 VSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALL--HEGAGIVVD 199
             RDF  E   +  F HPN++ + G V     ++++++YM  GSL + L  H+    V+ 
Sbjct: 89  QRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQ 148
Query: 200 FAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
               LR    +A GM +L  +  +     L +R++++
Sbjct: 149 LVGMLR---GIASGMKYLSDMGYV--HRDLAARNILI 180

>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant Length = 373

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 14/157 (8%)
Query: 89  RDATLSRH---KGISLNDLSLHTKISSGPNGDTWRGRWQ---KNDIVAKILAVR-NCTPR 141
            D T + H   K +   ++S+   + +G  G+   GR +   K +I   I  ++   T +
Sbjct: 29  EDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEK 88
Query: 142 VSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALL--HEGAGIVVD 199
             RDF  E   +  F HPN++ + G V     ++++++YM  GSL + L  H+    V+ 
Sbjct: 89  QRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQ 148
Query: 200 FAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
               LR    +A GM +L  +  +     L +R++++
Sbjct: 149 LVGMLR---GIASGMKYLSDMGYV--HRDLAARNILI 180

>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 373

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 14/157 (8%)
Query: 89  RDATLSRH---KGISLNDLSLHTKISSGPNGDTWRGRWQ---KNDIVAKILAVR-NCTPR 141
            D T + H   K +   ++S+   + +G  G+   GR +   K +I   I  ++   T +
Sbjct: 29  EDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEK 88
Query: 142 VSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALL--HEGAGIVVD 199
             RDF  E   +  F HPN++ + G V     ++++++YM  GSL + L  H+    V+ 
Sbjct: 89  QRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQ 148
Query: 200 FAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
               LR    +A GM +L  +  +     L +R++++
Sbjct: 149 LVGMLR---GIASGMKYLSDMGYV--HRDLAARNILI 180

>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f Double Mutant Length = 373

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 14/157 (8%)
Query: 89  RDATLSRH---KGISLNDLSLHTKISSGPNGDTWRGRWQ---KNDIVAKILAVR-NCTPR 141
            D T + H   K +   ++S+   + +G  G+   GR +   K +I   I  ++   T +
Sbjct: 29  EDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEK 88
Query: 142 VSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALL--HEGAGIVVD 199
             RDF  E   +  F HPN++ + G V     ++++++YM  GSL + L  H+    V+ 
Sbjct: 89  QRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQ 148
Query: 200 FAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
               LR    +A GM +L  +  +     L +R++++
Sbjct: 149 LVGMLR---GIASGMKYLSDMGYV--HRDLAARNILI 180

>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma Viral Oncogene Homologue (V-Fes) In Complex With Staurosporine And A Consensus Peptide Length = 377

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 4/120 (3%)
Query: 102 NDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNC-TPRVSRDFNEEFPKLRIFSHPN 160
            DL L  +I  G  G+ + GR + ++ +  + + R    P +   F +E   L+ +SHPN
Sbjct: 114 EDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPN 173
Query: 161 VLPVIG-CVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS 219
           ++ +IG C    P  +V+        L  L  EGA + V     L+   D A GM +L S
Sbjct: 174 IVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTEGARLRVK--TLLQMVGDAAAGMEYLES 231

>pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To Vinylsulfonamide- Pyrazolopyrimidine 9 Length = 286

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 53/123 (43%), Gaps = 5/123 (4%)
Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFS 157
           I    L L  K+  G  G+ W G W     VA K L     +P     F +E   ++   
Sbjct: 15  IPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEA---FLQEAQVMKKLR 71
Query: 158 HPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
           H  ++ +   V+  P + ++ +YM+ GSL   L    G  +   Q +  A  +A GMA++
Sbjct: 72  HEKLVQLYAVVSEEP-IYIVCEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYV 130
Query: 218 HSL 220
             +
Sbjct: 131 ERM 133

>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene Homologue (V- Fes) Length = 377

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 4/120 (3%)
Query: 102 NDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNC-TPRVSRDFNEEFPKLRIFSHPN 160
            DL L  +I  G  G+ + GR + ++ +  + + R    P +   F +E   L+ +SHPN
Sbjct: 114 EDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPN 173
Query: 161 VLPVIG-CVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS 219
           ++ +IG C    P  +V+        L  L  EGA + V     L+   D A GM +L S
Sbjct: 174 IVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTEGARLRVK--TLLQMVGDAAAGMEYLES 231

>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound Structure Length = 344

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 70/146 (47%), Gaps = 11/146 (7%)
Query: 97  KGISLNDLSLHTKISSGPNGDTWRGRWQ---KNDIVAKILAVR-NCTPRVSRDFNEEFPK 152
           K +   ++S+   + +G  G+   GR +   K +I   I  ++   T +  RDF  E   
Sbjct: 11  KELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASI 70
Query: 153 LRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALL--HEGAGIVVDFAQALRFAVDV 210
           +  F HPN++ + G V     ++++++YM  GSL + L  H+    V+     LR    +
Sbjct: 71  MGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLR---GI 127
Query: 211 ARGMAFLHSLERIIPQYQLNSRHVMV 236
           A GM +L  +  +     L +R++++
Sbjct: 128 ASGMKYLSDMGYV--HRDLAARNILI 151

>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor Awl-Ii- 38.3 Length = 361

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 75/157 (47%), Gaps = 14/157 (8%)
Query: 89  RDATLSRH---KGISLNDLSLHTKISSGPNGDTWRGRWQ---KNDIVAKILAVR-NCTPR 141
           R +T + H   K +   ++S+   + +G  G+   GR +   K +I   I  ++   T +
Sbjct: 17  RGSTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEK 76
Query: 142 VSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALL--HEGAGIVVD 199
             RDF  E   +  F HPN++ + G V     ++++++YM  GSL + L  H+    V+ 
Sbjct: 77  QRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQ 136
Query: 200 FAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
               LR    +A GM +L  +  +     L +R++++
Sbjct: 137 LVGMLR---GIASGMKYLSDMGYV--HRDLAARNILI 168

>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742f Triple Mutant Length = 373

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 66/141 (46%), Gaps = 12/141 (8%)
Query: 89  RDATLSRH---KGISLNDLSLHTKISSGPNGDTWRGRWQ---KNDIVAKILAVR-NCTPR 141
            D T + H   K +   ++S+   + +G  G+   GR +   K +I   I  ++   T +
Sbjct: 29  EDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEK 88
Query: 142 VSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALL--HEGAGIVVD 199
             RDF  E   +  F HPN++ + G V     ++++++YM  GSL + L  H+    V+ 
Sbjct: 89  QRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQ 148
Query: 200 FAQALRFAVDVARGMAFLHSL 220
               LR    +A GM +L  +
Sbjct: 149 LVGMLR---GIASGMKYLSDM 166

>pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 71/152 (46%), Gaps = 11/152 (7%)
Query: 91  ATLSRHKGISLNDLSLHTKISSGPNGDTWRGRWQ---KNDIVAKILAVR-NCTPRVSRDF 146
           A  S  + I  + + +   I SG +G+   GR +   + D+   I A++   T R  RDF
Sbjct: 38  AGRSFTREIEASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDF 97
Query: 147 NEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALL--HEGAGIVVDFAQAL 204
             E   +  F HPN++ + G V      +++++YM  GSL   L  H+G   ++     L
Sbjct: 98  LSEASIMGQFDHPNIIRLEGVVTRGRLAMIVTEYMENGSLDTFLRTHDGQFTIMQLVGML 157
Query: 205 RFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
           R    V  GM +L  L  +     L +R+V+V
Sbjct: 158 R---GVGAGMRYLSDLGYV--HRDLAARNVLV 184

>pdb|3KUL|B Chain B, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 71/152 (46%), Gaps = 11/152 (7%)
Query: 91  ATLSRHKGISLNDLSLHTKISSGPNGDTWRGRWQ---KNDIVAKILAVR-NCTPRVSRDF 146
           A  S  + I  + + +   I SG +G+   GR +   + D+   I A++   T R  RDF
Sbjct: 38  AGRSFTREIEASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDF 97
Query: 147 NEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALL--HEGAGIVVDFAQAL 204
             E   +  F HPN++ + G V      +++++YM  GSL   L  H+G   ++     L
Sbjct: 98  LSEASIMGQFDHPNIIRLEGVVTRGRLAMIVTEYMENGSLDTFLRTHDGQFTIMQLVGML 157
Query: 205 RFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
           R    V  GM +L  L  +     L +R+V+V
Sbjct: 158 R---GVGAGMRYLSDLGYV--HRDLAARNVLV 184

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 4   VSVTDDHGFSPLHWACKEGHLKLVE-LLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRL 62
           V+  D  G + L+WAC  GH  +VE L  Q    +N  N+  DT LH AA  G+ DIV+L
Sbjct: 99  VNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQL 158
Query: 63  LAVQNNQ-DLTKINFK 77
           L  +  + DL  I  K
Sbjct: 159 LLAKGARTDLRNIEKK 174

>pdb|3H9R|A Chain A, Crystal Structure Of The Kinase Domain Of Type I Activin Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin Length = 330

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 54/124 (43%), Gaps = 20/124 (16%)
Query: 104 LSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFS-----H 158
           ++L   +  G  G+ WRG WQ  ++  KI +        SRD    F +  +++     H
Sbjct: 39  ITLLECVGKGRYGEVWRGSWQGENVAVKIFS--------SRDEKSWFRETELYNTVMLRH 90
Query: 159 PNVLPVIG----CVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGM 214
            N+L  I       +S   L +I+ Y   GSLY  L       +D    LR  + +A G+
Sbjct: 91  ENILGFIASDMTSRHSSTQLWLITHYHEMGSLYDYLQL---TTLDTVSCLRIVLSIASGL 147
Query: 215 AFLH 218
           A LH
Sbjct: 148 AHLH 151

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Query: 5   SVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLA 64
           +V D  G SP+H A + G L  +++L++ GA VNA +     P+HLA   GH  +V  LA
Sbjct: 70  NVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLA 129
Query: 65  VQNNQDLTKINFKDQSWL 82
            +++     ++ +D S L
Sbjct: 130 PESD-----LHHRDASGL 142

>pdb|4DYM|A Chain A, Crystal Structure Of The Acvr1 Kinase Domain In Complex With The Imidazo[1,2-B]pyridazine Inhibitor K00135 Length = 301

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 54/124 (43%), Gaps = 20/124 (16%)
Query: 104 LSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFS-----H 158
           ++L   +  G  G+ WRG WQ  ++  KI +        SRD    F +  +++     H
Sbjct: 10  ITLLECVGKGRYGEVWRGSWQGENVAVKIFS--------SRDEKSWFRETELYNTVMLRH 61
Query: 159 PNVLPVIG----CVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGM 214
            N+L  I       +S   L +I+ Y   GSLY  L       +D    LR  + +A G+
Sbjct: 62  ENILGFIASDMTSRHSSTQLWLITHYHEMGSLYDYLQL---TTLDTVSCLRIVLSIASGL 118
Query: 215 AFLH 218
           A LH
Sbjct: 119 AHLH 122

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Query: 5   SVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLA 64
           +V D  G SP+H A + G L  +++L++ GA VNA +     P+HLA   GH  +V  LA
Sbjct: 68  NVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLA 127
Query: 65  VQNNQDLTKINFKDQSWL 82
            +++     ++ +D S L
Sbjct: 128 PESD-----LHHRDASGL 140

>pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Covalent Inhibitor Length = 286

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 5/123 (4%)
Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFS 157
           I    L L  K+  G  G+ W G W     VA K L     +P     F +E   ++   
Sbjct: 15  IPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEA---FLQEAQVMKKLR 71
Query: 158 HPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
           H  ++ +   V+  P + ++++YM+ G L   L    G  +   Q +  A  +A GMA++
Sbjct: 72  HEKLVQLYAVVSEEP-IYIVTEYMSKGCLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYV 130
Query: 218 HSL 220
             +
Sbjct: 131 ERM 133

>pdb|2XYU|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With Vuf 12058 Length = 285

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 11/146 (7%)
Query: 97  KGISLNDLSLHTKISSGPNGDTWRGRWQ---KNDIVAKILAVR-NCTPRVSRDFNEEFPK 152
           K I  + + +   I  G  G+   GR +   K +I   I  ++   T +  RDF  E   
Sbjct: 3   KEIDASCIKIEKVIGVGEFGEVCSGRLKVPGKREICVAIKTLKAGYTDKQRRDFLSEASI 62
Query: 153 LRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAG--IVVDFAQALRFAVDV 210
           +  F HPN++ + G V     +++I++YM  GSL A L +  G   V+     LR    +
Sbjct: 63  MGQFDHPNIIHLEGVVTKCKPVMIITEYMENGSLDAFLRKNDGRFTVIQLVGMLR---GI 119
Query: 211 ARGMAFLHSLERIIPQYQLNSRHVMV 236
             GM +L  +  +     L +R+++V
Sbjct: 120 GSGMKYLSDMSYV--HRDLAARNILV 143

>pdb|2Y6M|A Chain A, Crystal Structure Of Epha4 Kinase Domain Length = 291

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 11/146 (7%)
Query: 97  KGISLNDLSLHTKISSGPNGDTWRGRWQ---KNDIVAKILAVR-NCTPRVSRDFNEEFPK 152
           K I  + + +   I  G  G+   GR +   K +I   I  ++   T +  RDF  E   
Sbjct: 9   KEIDASCIKIEKVIGVGEFGEVCSGRLKVPGKREICVAIKTLKAGYTDKQRRDFLSEASI 68
Query: 153 LRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAG--IVVDFAQALRFAVDV 210
           +  F HPN++ + G V     +++I++YM  GSL A L +  G   V+     LR    +
Sbjct: 69  MGQFDHPNIIHLEGVVTKCKPVMIITEYMENGSLDAFLRKNDGRFTVIQLVGMLR---GI 125
Query: 211 ARGMAFLHSLERIIPQYQLNSRHVMV 236
             GM +L  +  +     L +R+++V
Sbjct: 126 GSGMKYLSDMSYV--HRDLAARNILV 149

>pdb|3SXR|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase Complex With Dasatinib Length = 268

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 63/130 (48%), Gaps = 7/130 (5%)
Query: 96  HKGISLNDLSLHTKISSGPNGDTWRGRWQ-KNDIVAKILAVRNCTPRVSRDFNEEFPKLR 154
           H  +   +++L  ++ SG  G    G+W+ + D+  K++   + +     +F +E   + 
Sbjct: 2   HMELKREEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSMS---EDEFFQEAQTMM 58
Query: 155 IFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHE-GAGIVVDFAQALRFAVDVARG 213
             SHP ++   G  +    + ++++Y++ G L   L   G G+  + +Q L    DV  G
Sbjct: 59  KLSHPKLVKFYGVCSKEYPIYIVTEYISNGCLLNYLRSHGKGL--EPSQLLEMCYDVCEG 116
Query: 214 MAFLHSLERI 223
           MAFL S + I
Sbjct: 117 MAFLESHQFI 126

>pdb|2HEL|A Chain A, Crystal Structure Of A Mutant Epha4 Kinase Domain (Y742a) Length = 306

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 11/146 (7%)
Query: 97  KGISLNDLSLHTKISSGPNGDTWRGRWQ---KNDIVAKILAVR-NCTPRVSRDFNEEFPK 152
           K I  + + +   I  G  G+   GR +   K +I   I  ++   T +  RDF  E   
Sbjct: 24  KEIDASCIKIEKVIGVGEFGEVCSGRLKVPGKREICVAIKTLKAGYTDKQRRDFLSEASI 83
Query: 153 LRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAG--IVVDFAQALRFAVDV 210
           +  F HPN++ + G V     +++I++YM  GSL A L +  G   V+     LR    +
Sbjct: 84  MGQFDHPNIIHLEGVVTKCKPVMIITEYMENGSLDAFLRKNDGRFTVIQLVGMLR---GI 140
Query: 211 ARGMAFLHSLERIIPQYQLNSRHVMV 236
             GM +L  +  +     L +R+++V
Sbjct: 141 GSGMKYLSDMSAV--HRDLAARNILV 164

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 51/104 (49%), Gaps = 17/104 (16%)
Query: 2   YYVS-------VTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAH 54
           YY+S       +  D   +PLHWA ++GHL +V  L++ GA  +  +    + +HLAA  
Sbjct: 60  YYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQF 119
Query: 55  GHLDIVRLLAVQNNQDLTKINFKDQS------WLGLKTRSRDAT 92
           GH  IV  L +   QD   ++  DQ+      W   +T S D T
Sbjct: 120 GHTSIVAYL-IAKGQD---VDMMDQNGMTPLMWAAYRTHSVDPT 159

>pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Cgp77675 Length = 283

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 5/123 (4%)
Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFS 157
           I    L L  K+  G  G+ W G W     VA K L     +P     F +E   ++   
Sbjct: 12  IPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEA---FLQEAQVMKKLR 68
Query: 158 HPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
           H  ++ +   V+  P + ++++YM  GSL   L    G  +   Q +  +  +A GMA++
Sbjct: 69  HEKLVQLYAVVSEEP-IYIVTEYMNKGSLLDFLKGETGKYLRLPQLVDMSAQIASGMAYV 127
Query: 218 HSL 220
             +
Sbjct: 128 ERM 130

>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With Its Activating Protein Tab1 Length = 307

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 63/125 (50%), Gaps = 9/125 (7%)
Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSH 158
           I   ++ +   +  G  G   + +W+  D+  K +   +      + F  E  +L   +H
Sbjct: 5   IDYKEIEVEEVVGRGAFGVVCKAKWRAKDVAIKQIESES----ERKAFIVELRQLSRVNH 60
Query: 159 PNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDF--AQALRFAVDVARGMAF 216
           PN++ + G   +P  + ++ +Y   GSLY +LH GA  +  +  A A+ + +  ++G+A+
Sbjct: 61  PNIVKLYGACLNP--VCLVMEYAEGGSLYNVLH-GAEPLPYYTAAHAMSWCLQCSQGVAY 117
Query: 217 LHSLE 221
           LHS++
Sbjct: 118 LHSMQ 122

>pdb|4AW5|A Chain A, Complex Of The Ephb4 Kinase Domain With An Oxindole Inhibitor Length = 291

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 73/152 (48%), Gaps = 11/152 (7%)
Query: 91  ATLSRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNC----TPRVSRDF 146
            ++   K I ++ + +   I +G  G+  RGR +        +A++      T R  R+F
Sbjct: 3   GSMEFAKEIDVSYVKIEEVIGAGEFGEVCRGRLKAPGKKESCVAIKTLKGGYTERQRREF 62
Query: 147 NEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSL--YALLHEGAGIVVDFAQAL 204
             E   +  F HPN++ + G V +   +++++++M  G+L  +  L++G   V+     L
Sbjct: 63  LSEASIMGQFEHPNIIRLEGVVTNSMPVMILTEFMENGALDSFLRLNDGQFTVIQLVGML 122
Query: 205 RFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
           R    +A GM +L  +  +     L +R+++V
Sbjct: 123 R---GIASGMRYLAEMSYV--HRDLAARNILV 149

>pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex Length = 302

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 71/146 (48%), Gaps = 11/146 (7%)
Query: 97  KGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNC----TPRVSRDFNEEFPK 152
           K I ++ + +   I +G  G+  RGR +        +A++      T R  R+F  E   
Sbjct: 11  KEIDVSYVKIEEVIGAGEFGEVCRGRLKAPGKKESCVAIKTLKGGYTERQRREFLSEASI 70
Query: 153 LRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSL--YALLHEGAGIVVDFAQALRFAVDV 210
           +  F HPN++ + G V +   +++++++M  G+L  +  L++G   V+     LR    +
Sbjct: 71  MGQFEHPNIIRLEGVVTNSMPVMILTEFMENGALDSFLRLNDGQFTVIQLVGMLR---GI 127
Query: 211 ARGMAFLHSLERIIPQYQLNSRHVMV 236
           A GM +L  +  +     L +R+++V
Sbjct: 128 ASGMRYLAEMSYV--HRDLAARNILV 151

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 38/60 (63%)
Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           V+  D +G +PLH A + GHL++V+LLL+ GA V A ++   T   ++  +G+ D+  +L
Sbjct: 50  VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain Length = 283

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 5/123 (4%)
Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFS 157
           I    L L  K+  G  G+ W G W     VA K L     +P     F +E   ++   
Sbjct: 12  IPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEA---FLQEAQVMKKLR 68
Query: 158 HPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
           H  ++ +   V+  P + ++++YM  GSL   L    G  +   Q +  +  +A GMA++
Sbjct: 69  HEKLVQLYAVVSEEP-IYIVTEYMNKGSLLDFLKGETGKYLRLPQLVDMSAQIASGMAYV 127
Query: 218 HSL 220
             +
Sbjct: 128 ERM 130

>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol Length = 315

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 63/125 (50%), Gaps = 9/125 (7%)
Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSH 158
           I   ++ +   +  G  G   + +W+  D+  K +   +      + F  E  +L   +H
Sbjct: 6   IDYKEIEVEEVVGRGAFGVVCKAKWRAKDVAIKQIESES----ERKAFIVELRQLSRVNH 61
Query: 159 PNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDF--AQALRFAVDVARGMAF 216
           PN++ + G   +P  + ++ +Y   GSLY +LH GA  +  +  A A+ + +  ++G+A+
Sbjct: 62  PNIVKLYGACLNP--VCLVMEYAEGGSLYNVLH-GAEPLPYYTAAHAMSWCLQCSQGVAY 118
Query: 217 LHSLE 221
           LHS++
Sbjct: 119 LHSMQ 123

>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With V-1 Length = 123

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 37/60 (61%)
Query: 4  VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
          V+ T + G  PLH+A   G L+++E LL +GA +NA ++   TPL  A   GH+  V+LL
Sbjct: 33 VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLL 92

>pdb|1JPA|A Chain A, Crystal Structure Of Unphosphorylated Ephb2 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 312

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 70/146 (47%), Gaps = 11/146 (7%)
Query: 97  KGISLNDLSLHTKISSGPNGDTWRGRWQ---KNDIVAKILAVRNC-TPRVSRDFNEEFPK 152
           K I ++ + +   I +G  G+   G  +   K +I   I  +++  T +  RDF  E   
Sbjct: 28  KEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASI 87
Query: 153 LRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAG--IVVDFAQALRFAVDV 210
           +  F HPNV+ + G V     +++I+++M  GSL + L +  G   V+     LR    +
Sbjct: 88  MGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQNDGQFTVIQLVGMLR---GI 144
Query: 211 ARGMAFLHSLERIIPQYQLNSRHVMV 236
           A GM +L  +  +     L +R+++V
Sbjct: 145 AAGMKYLADMNYV--HRDLAARNILV 168

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 37/64 (57%)
Query: 5   SVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLA 64
           +V D  G SP+H A + G L  +++L++ GA VN  +     P+HLA   GH  +V  LA
Sbjct: 68  NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA 127
Query: 65  VQNN 68
            +++
Sbjct: 128 AESD 131

>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures Length = 118

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 37/60 (61%)
Query: 4  VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
          V+ T + G  PLH+A   G L+++E LL +GA +NA ++   TPL  A   GH+  V+LL
Sbjct: 28 VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLL 87

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 37/64 (57%)
Query: 5   SVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLA 64
           +V D  G SP+H A + G L  +++L++ GA VN  +     P+HLA   GH  +V  LA
Sbjct: 62  NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA 121
Query: 65  VQNN 68
            +++
Sbjct: 122 AESD 125

>pdb|2HEN|A Chain A, Crystal Structure Of The Ephb2 Receptor Kinase Domain In Complex With Adp Length = 286

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 70/146 (47%), Gaps = 11/146 (7%)
Query: 97  KGISLNDLSLHTKISSGPNGDTWRGRWQ---KNDIVAKILAVRNC-TPRVSRDFNEEFPK 152
           K I ++ + +   I +G  G+   G  +   K +I   I  +++  T +  RDF  E   
Sbjct: 2   KEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASI 61
Query: 153 LRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAG--IVVDFAQALRFAVDV 210
           +  F HPNV+ + G V     +++I+++M  GSL + L +  G   V+     LR    +
Sbjct: 62  MGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQNDGQFTVIQLVGMLR---GI 118
Query: 211 ARGMAFLHSLERIIPQYQLNSRHVMV 236
           A GM +L  +  +     L +R+++V
Sbjct: 119 AAGMKYLADMNYV--HRALAARNILV 142

>pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With Irreversible Inhibitor Length = 286

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 5/123 (4%)
Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFS 157
           I    L L  K+  G  G+ W G W     VA K L     +P     F +E   ++   
Sbjct: 15  IPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEA---FLQEAQVMKKLR 71
Query: 158 HPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
           H  ++ +   V+  P + ++ +YM+ G L   L    G  +   Q +  A  +A GMA++
Sbjct: 72  HEKLVQLYAVVSEEP-IYIVMEYMSKGCLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYV 130
Query: 218 HSL 220
             +
Sbjct: 131 ERM 133

>pdb|2ZV7|A Chain A, Lyn Tyrosine Kinase Domain, Apo Form Length = 279

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 6/122 (4%)
Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVS--RDFNEEFPKLRIF 156
           I    + L  K+ +G  G+ W G +  +  VA    V+   P     + F EE   ++  
Sbjct: 9   IPRESIKLVKKLGAGQFGEVWMGYYNNSTKVA----VKTLKPGTMSVQAFLEEANLMKTL 64
Query: 157 SHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAF 216
            H  ++ +   V     + +I+++MA GSL   L    G  V   + + F+  +A GMA+
Sbjct: 65  QHDKLVRLYAVVTKEEPIYIITEFMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAY 124
Query: 217 LH 218
           + 
Sbjct: 125 IE 126

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 5   SVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           S+ +D G + LH A   GH ++V+ L+Q G  VNA +    TPLH AA+  ++ + + L
Sbjct: 64  SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFL 122

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 5   SVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           S+ +D G + LH A   GH ++V+ L+Q G  VNA +    TPLH AA+  ++ + + L
Sbjct: 64  SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFL 122

>pdb|3A4O|X Chain X, Lyn Kinase Domain Length = 286

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 6/122 (4%)
Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVS--RDFNEEFPKLRIF 156
           I    + L  ++ +G  G+ W G +  +  VA    V+   P     + F EE   ++  
Sbjct: 10  IPRESIKLVKRLGAGQFGEVWMGYYNNSTKVA----VKTLKPGTMSVQAFLEEANLMKTL 65
Query: 157 SHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAF 216
            H  ++ +   V     + +I++YMA GSL   L    G  V   + + F+  +A GMA+
Sbjct: 66  QHDKLVRLYAVVTREEPIYIITEYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAY 125
Query: 217 LH 218
           + 
Sbjct: 126 IE 127

>pdb|3MY0|A Chain A, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound To Ldn- 193189 Length = 305

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 50/118 (42%), Gaps = 20/118 (16%)
Query: 110 ISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFS-----HPNVLPV 164
           +  G  G+ WRG W    +  KI +        SRD    F +  I++     H N+L  
Sbjct: 16  VGKGRYGEVWRGLWHGESVAVKIFS--------SRDEQSWFRETEIYNTVLLRHDNILGF 67
Query: 165 IG----CVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH 218
           I       NS   L +I+ Y   GSLY  L       ++   ALR AV  A G+A LH
Sbjct: 68  IASDMTSRNSSTQLWLITHYHEHGSLYDFLQRQ---TLEPHLALRLAVSAACGLAHLH 122

>pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742a Triple Mutant Length = 373

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 73/157 (46%), Gaps = 14/157 (8%)
Query: 89  RDATLSRH---KGISLNDLSLHTKISSGPNGDTWRGRWQ---KNDIVAKILAVR-NCTPR 141
            D T + H   K +   ++S+   + +G  G+   GR +   K +I   I  ++   T +
Sbjct: 29  EDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEK 88
Query: 142 VSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALL--HEGAGIVVD 199
             RDF  E   +  F HPN++ + G V     ++++++ M  GSL + L  H+    V+ 
Sbjct: 89  QRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEXMENGSLDSFLRKHDAQFTVIQ 148
Query: 200 FAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
               LR    +A GM +L  +  +     L +R++++
Sbjct: 149 LVGMLR---GIASGMKYLSDMGAV--HRDLAARNILI 180

>pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Dephosphorylated, Amp-Pnp Bound Length = 373

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 73/157 (46%), Gaps = 14/157 (8%)
Query: 89  RDATLSRH---KGISLNDLSLHTKISSGPNGDTWRGRWQ---KNDIVAKILAVR-NCTPR 141
            D T + H   K +   ++S+   + +G  G+   GR +   K +I   I  ++   T +
Sbjct: 29  EDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEK 88
Query: 142 VSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALL--HEGAGIVVD 199
             RDF  E   +  F HPN++ + G V     ++++++ M  GSL + L  H+    V+ 
Sbjct: 89  QRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEXMENGSLDSFLRKHDAQFTVIQ 148
Query: 200 FAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
               LR    +A GM +L  +  +     L +R++++
Sbjct: 149 LVGMLR---GIASGMKYLSDMGYV--HRDLAARNILI 180

>pdb|2REI|A Chain A, Kinase Domain Of Human Ephrin Type-a Receptor 7 (epha7) Length = 318

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 11/146 (7%)
Query: 97  KGISLNDLSLHTKISSGPNGDTWRGRWQ---KNDIVAKILAVR-NCTPRVSRDFNEEFPK 152
           K +  + + +   I +G  G+   GR +   K D+   I  ++   T +  RDF  E   
Sbjct: 38  KELDASCIKIERVIGAGEFGEVCSGRLKLPGKRDVAVAIKTLKVGYTEKQRRDFLCEASI 97
Query: 153 LRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALL--HEGAGIVVDFAQALRFAVDV 210
           +  F HPNV+ + G V     ++++ ++M  G+L A L  H+G   V+     LR    +
Sbjct: 98  MGQFDHPNVVHLEGVVTRGKPVMIVIEFMENGALDAFLRKHDGQFTVIQLVGMLR---GI 154
Query: 211 ARGMAFLHSLERIIPQYQLNSRHVMV 236
           A GM +L  +  +     L +R+++V
Sbjct: 155 AAGMRYLADMGYV--HRDLAARNILV 178

>pdb|4HZR|A Chain A, Crystal Structure Of Ack1 Kinase Domain Length = 277

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 54/127 (42%), Gaps = 8/127 (6%)
Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRV------SRDFNEEFPK 152
           I   DL L  K+  G  G   RG W         +AV+   P V        DF  E   
Sbjct: 9   IGEKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNA 68
Query: 153 LRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVAR 212
           +    H N++ + G V +PP + ++++    GSL   L +  G  +      R+AV VA 
Sbjct: 69  MHSLDHRNLIRLYGVVLTPP-MKMVTELAPLGSLLDRLRKHQGHFL-LGTLSRYAVQVAE 126
Query: 213 GMAFLHS 219
           GM +L S
Sbjct: 127 GMGYLES 133

>pdb|3EQP|B Chain B, Crystal Structure Of Ack1 With Compound T95 Length = 276

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 54/127 (42%), Gaps = 8/127 (6%)
Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRV------SRDFNEEFPK 152
           I   DL L  K+  G  G   RG W         +AV+   P V        DF  E   
Sbjct: 5   IGEKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNA 64
Query: 153 LRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVAR 212
           +    H N++ + G V +PP + ++++    GSL   L +  G  +      R+AV VA 
Sbjct: 65  MHSLDHRNLIRLYGVVLTPP-MKMVTELAPLGSLLDRLRKHQGHFL-LGTLSRYAVQVAE 122
Query: 213 GMAFLHS 219
           GM +L S
Sbjct: 123 GMGYLES 129

>pdb|4ID7|A Chain A, Ack1 Kinase In Complex With The Inhibitor Cis-3-[8-amino-1-(4- Phenoxyphenyl)imidazo[1,5-a]pyrazin-3-yl]cyclobutanol Length = 273

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 54/127 (42%), Gaps = 8/127 (6%)
Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRV------SRDFNEEFPK 152
           I   DL L  K+  G  G   RG W         +AV+   P V        DF  E   
Sbjct: 5   IGEKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNA 64
Query: 153 LRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVAR 212
           +    H N++ + G V +PP + ++++    GSL   L +  G  +      R+AV VA 
Sbjct: 65  MHSLDHRNLIRLYGVVLTPP-MKMVTELAPLGSLLDRLRKHQGHFL-LGTLSRYAVQVAE 122
Query: 213 GMAFLHS 219
           GM +L S
Sbjct: 123 GMGYLES 129

>pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure Length = 344

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 69/146 (47%), Gaps = 11/146 (7%)
Query: 97  KGISLNDLSLHTKISSGPNGDTWRGRWQ---KNDIVAKILAVR-NCTPRVSRDFNEEFPK 152
           K +   ++S+   + +G  G+   GR +   K +I   I  ++   T +  RDF  E   
Sbjct: 11  KELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASI 70
Query: 153 LRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALL--HEGAGIVVDFAQALRFAVDV 210
           +  F HPN++ + G V     ++++++ M  GSL + L  H+    V+     LR    +
Sbjct: 71  MGQFDHPNIIRLEGVVTKSKPVMIVTEXMENGSLDSFLRKHDAQFTVIQLVGMLR---GI 127
Query: 211 ARGMAFLHSLERIIPQYQLNSRHVMV 236
           A GM +L  +  +     L +R++++
Sbjct: 128 ASGMKYLSDMGYV--HRDLAARNILI 151

>pdb|1U46|A Chain A, Crystal Structure Of The Unphosphorylated Kinase Domain Of The Tyrosine Kinase Ack1 Length = 291

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 54/127 (42%), Gaps = 8/127 (6%)
Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRV------SRDFNEEFPK 152
           I   DL L  K+  G  G   RG W         +AV+   P V        DF  E   
Sbjct: 15  IGEKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNA 74
Query: 153 LRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVAR 212
           +    H N++ + G V +PP + ++++    GSL   L +  G  +      R+AV VA 
Sbjct: 75  MHSLDHRNLIRLYGVVLTPP-MKMVTELAPLGSLLDRLRKHQGHFL-LGTLSRYAVQVAE 132
Query: 213 GMAFLHS 219
           GM +L S
Sbjct: 133 GMGYLES 139

>pdb|1U54|A Chain A, Crystal Structures Of The Phosphorylated And Unphosphorylated Kinase Domains Of The Cdc42-Associated Tyrosine Kinase Ack1 Bound To Amp-Pcp Length = 291

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 54/127 (42%), Gaps = 8/127 (6%)
Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRV------SRDFNEEFPK 152
           I   DL L  K+  G  G   RG W         +AV+   P V        DF  E   
Sbjct: 15  IGEKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNA 74
Query: 153 LRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVAR 212
           +    H N++ + G V +PP + ++++    GSL   L +  G  +      R+AV VA 
Sbjct: 75  MHSLDHRNLIRLYGVVLTPP-MKMVTELAPLGSLLDRLRKHQGHFL-LGTLSRYAVQVAE 132
Query: 213 GMAFLHS 219
           GM +L S
Sbjct: 133 GMGYLES 139

>pdb|4EWH|B Chain B, Co-Crystal Structure Of Ack1 With Inhibitor Length = 275

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 54/127 (42%), Gaps = 8/127 (6%)
Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRV------SRDFNEEFPK 152
           I   DL L  K+  G  G   RG W         +AV+   P V        DF  E   
Sbjct: 5   IGEKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNA 64
Query: 153 LRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVAR 212
           +    H N++ + G V +PP + ++++    GSL   L +  G  +      R+AV VA 
Sbjct: 65  MHSLDHRNLIRLYGVVLTPP-MKMVTELAPLGSLLDRLRKHQGHFL-LGTLSRYAVQVAE 122
Query: 213 GMAFLHS 219
           GM +L S
Sbjct: 123 GMGYLES 129

>pdb|3NYX|A Chain A, Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-Thiadiazole- Thiophene Inhibitor Length = 302

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 11/117 (9%)
Query: 126 NDIVAKILAVR----NCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPD--LVVISQ 179
           ND   +++AV+    +C P+    + +E   LR   H +++   GC     +  L ++ +
Sbjct: 39  NDGTGEMVAVKALKADCGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDQGEKSLQLVME 98
Query: 180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
           Y+  GSL   L   +   +  AQ L FA  +  GMA+LHS   I     L +R+V++
Sbjct: 99  YVPLGSLRDYLPRHS---IGLAQLLLFAQQICEGMAYLHSQHYI--HRNLAARNVLL 150

>pdb|4HZS|A Chain A, Crystal Structure Of Ack1 Kinase Domain With C-terminal Sh3 Domain Length = 341

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 54/127 (42%), Gaps = 8/127 (6%)
Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRV------SRDFNEEFPK 152
           I   DL L  K+  G  G   RG W         +AV+   P V        DF  E   
Sbjct: 9   IGEKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNA 68
Query: 153 LRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVAR 212
           +    H N++ + G V +PP + ++++    GSL   L +  G  +      R+AV VA 
Sbjct: 69  MHSLDHRNLIRLYGVVLTPP-MKMVTELAPLGSLLDRLRKHQGHFL-LGTLSRYAVQVAE 126
Query: 213 GMAFLHS 219
           GM +L S
Sbjct: 127 GMGYLES 133

>pdb|2WOT|A Chain A, Alk5 In Complex With 4-((5,6-Dimethyl-2-(2-Pyridyl)-3- Pyridyl)oxy)-N-(3,4,5-Trimethoxyphenyl)pyridin-2-Amine Length = 306

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 51/125 (40%), Gaps = 10/125 (8%)
Query: 98  GISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFS 157
           G     + L   I  G  G+ WRG+W+  ++  KI + R      S     E  +  +  
Sbjct: 2   GTIARTIVLQESIGKGRFGEVWRGKWRGEEVAVKIFSSRE---ERSWFREAEIYQTVMLR 58
Query: 158 HPNVLPVIGCVNSP----PDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARG 213
           H N+L  I   N        L ++S Y   GSL+  L+      V     ++ A+  A G
Sbjct: 59  HENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNR---YTVTVEGMIKLALSTASG 115
Query: 214 MAFLH 218
           +A LH
Sbjct: 116 LAHLH 120

>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed With Imidazo[1,5-A]quinoxaline Length = 267

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 7/139 (5%)
Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSH 158
           I  ++L+   +I SG  G    G W   D VA I  +R        DF EE   +   SH
Sbjct: 5   IDPSELTFVQEIGSGQFGLVHLGYWLNKDKVA-IKTIRE-GAMSEEDFIEEAEVMMKLSH 62
Query: 159 PNVLPVIG-CVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
           P ++ + G C+   P + +++++M  G L   L    G+       L   +DV  GMA+L
Sbjct: 63  PKLVQLYGVCLEQAP-ICLVTEFMEHGCLSDYLRTQRGLFAA-ETLLGMCLDVCEGMAYL 120
Query: 218 HSLERIIPQYQLNSRHVMV 236
              E  +    L +R+ +V
Sbjct: 121 E--EACVIHRDLAARNCLV 137

>pdb|1PY5|A Chain A, Crystal Structure Of Tgf-Beta Receptor I Kinase With Inhibitor Length = 326

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 10/117 (8%)
Query: 106 LHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVI 165
           L   I  G  G+ WRG+W+  ++  KI + R      S     E  +  +  H N+L  I
Sbjct: 33  LQESIGKGRFGEVWRGKWRGEEVAVKIFSSRE---ERSWFREAEIYQTVMLRHENILGFI 89
Query: 166 GCVNSP----PDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH 218
              N        L ++S Y   GSL+  L+      V     ++ A+  A G+A LH
Sbjct: 90  AADNKDNGTWTQLWLVSDYHEHGSLFDYLNR---YTVTVEGMIKLALSTASGLAHLH 143

>pdb|3TZM|A Chain A, Tgf-Beta Receptor Type 1 In Complex With Sb431542 Length = 309

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 10/117 (8%)
Query: 106 LHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVI 165
           L   I  G  G+ WRG+W+  ++  KI + R      S     E  +  +  H N+L  I
Sbjct: 13  LQESIGKGRFGEVWRGKWRGEEVAVKIFSSRE---ERSWFREAEIYQTVMLRHENILGFI 69
Query: 166 GCVNSP----PDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH 218
              N        L ++S Y   GSL+  L+      V     ++ A+  A G+A LH
Sbjct: 70  AADNKDNGTWTQLWLVSDYHEHGSLFDYLNR---YTVTVEGMIKLALSTASGLAHLH 123

>pdb|1RW8|A Chain A, Crystal Structure Of Tgf-Beta Receptor I Kinase With Atp Site Inhibitor Length = 301

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 10/117 (8%)
Query: 106 LHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVI 165
           L   I  G  G+ WRG+W+  ++  KI + R      S     E  +  +  H N+L  I
Sbjct: 8   LQESIGKGRFGEVWRGKWRGEEVAVKIFSSRE---ERSWFREAEIYQTVMLRHENILGFI 64
Query: 166 GCVNSP----PDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH 218
              N        L ++S Y   GSL+  L+      V     ++ A+  A G+A LH
Sbjct: 65  AADNKDNGTWTQLWLVSDYHEHGSLFDYLNR---YTVTVEGMIKLALSTASGLAHLH 118

>pdb|1VJY|A Chain A, Crystal Structure Of A Naphthyridine Inhibitor Of Human Tgf- Beta Type I Receptor Length = 303

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 20/122 (16%)
Query: 106 LHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFS-----HPN 160
           L   I  G  G+ WRG+W+  ++  KI +        SR+    F +  I+      H N
Sbjct: 7   LQESIGKGRFGEVWRGKWRGEEVAVKIFS--------SREERSWFREAEIYQTVMLRHEN 58
Query: 161 VLPVIGCVNSP----PDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAF 216
           +L  I   N        L ++S Y   GSL+  L+      V     ++ A+  A G+A 
Sbjct: 59  ILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNR---YTVTVEGMIKLALSTASGLAH 115
Query: 217 LH 218
           LH
Sbjct: 116 LH 117

>pdb|1B6C|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of The Type I Tgf-Beta Receptor In Complex With Fkbp12 Length = 342

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 51/119 (42%), Gaps = 14/119 (11%)
Query: 106 LHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRD-FNE-EFPKLRIFSHPNVLP 163
           L   I  G  G+ WRG+W+  ++  KI + R       R  F E E  +  +  H N+L 
Sbjct: 46  LQESIGKGRFGEVWRGKWRGEEVAVKIFSSRE-----ERSWFREAEIYQTVMLRHENILG 100
Query: 164 VIGCVNSP----PDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH 218
            I   N        L ++S Y   GSL+  L+      V     ++ A+  A G+A LH
Sbjct: 101 FIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNR---YTVTVEGMIKLALSTASGLAHLH 156

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 33/58 (56%)
Query: 6   VTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           + D  GF+ +H A + G L  ++ LL+  A VN  +   + PLHLAA  GHL +V  L
Sbjct: 65  LKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFL 122

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 11  GFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQ 66
           G + LH AC + ++ +V+ L++ GA +N  +     PLH AA+ G+LDI   L  Q
Sbjct: 73  GLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQ 128

>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In Complex With Inhibitor Staurosporine Length = 278

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 59/138 (42%), Gaps = 5/138 (3%)
Query: 82  LGLKTRSRDATLSRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPR 141
           +G    ++D        +++ +L L   I  G  GD   G ++ N +  K +        
Sbjct: 1   MGGSVAAQDEFYRSGWALNMKELKLLQTIGKGEFGDVMLGDYRGNKVAVKCIK----NDA 56
Query: 142 VSRDFNEEFPKLRIFSHPNVLPVIGC-VNSPPDLVVISQYMAWGSLYALLHEGAGIVVDF 200
            ++ F  E   +    H N++ ++G  V     L ++++YMA GSL   L      V+  
Sbjct: 57  TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGG 116
Query: 201 AQALRFAVDVARGMAFLH 218
              L+F++DV   M +L 
Sbjct: 117 DCLLKFSLDVCEAMEYLE 134

>pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck Length = 265

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 104 LSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFSHPNVL 162
           L L  ++ +G  G+ W G +  +  VA K L   + +P     F  E   ++   H  ++
Sbjct: 10  LKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDA---FLAEANLMKQLQHQRLV 66
Query: 163 PVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS 219
            +   V   P + +I++YM  GSL   L   +GI +   + L  A  +A GMAF+  
Sbjct: 67  RLYAVVTQEP-IYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEE 122

>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex Length = 438

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 7/122 (5%)
Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTP--RVSRDFNEEFPKLRIF 156
           I    L L  K+ +G  G+ W   + K+  VA    V+   P       F  E   ++  
Sbjct: 179 IPRESLKLEKKLGAGQFGEVWMATYNKHTKVA----VKTMKPGSMSVEAFLAEANVMKTL 234
Query: 157 SHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAF 216
            H  ++ +   V   P + +I+++MA GSL   L    G      + + F+  +A GMAF
Sbjct: 235 QHDKLVKLHAVVTKEP-IYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAF 293
Query: 217 LH 218
           + 
Sbjct: 294 IE 295

>pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 263

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 5/122 (4%)
Query: 98  GISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFS 157
            +++ +L L   I  G  GD   G ++ N +  K +         ++ F  E   +    
Sbjct: 2   ALNMKELKLLQTIGKGEFGDVMLGDYRGNKVAVKCIK----NDATAQAFLAEASVMTQLR 57
Query: 158 HPNVLPVIGC-VNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAF 216
           H N++ ++G  V     L ++++YMA GSL   L      V+     L+F++DV   M +
Sbjct: 58  HSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEY 117
Query: 217 LH 218
           L 
Sbjct: 118 LE 119

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 8   DDHGFSPLHWACKEGHLKLVELLLQRGAR------VNATNRGDDTPLHLAAAHGHLDIVR 61
           D  G +PLH AC++G L  V +L Q          + ATN    T LHLA+ HG+L IV 
Sbjct: 75  DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVE 134
Query: 62  LL 63
           LL
Sbjct: 135 LL 136

>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary Complex Bound To Dna Length = 373

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 8   DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           D+ G +P+  A +EG +++V  L+Q+GA V A +  D T   LA A+ H +IV + 
Sbjct: 310 DEDGKTPIXLAAQEGRIEVVXYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIF 365

>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family- Selective Tyrosine Kinase Inhibitor Length = 454

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 7/122 (5%)
Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTP--RVSRDFNEEFPKLRIF 156
           I    L L  K+ +G  G+ W   + K+  VA    V+   P       F  E   ++  
Sbjct: 185 IPRESLKLEKKLGAGQFGEVWMATYNKHTKVA----VKTMKPGSMSVEAFLAEANVMKTL 240
Query: 157 SHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAF 216
            H  ++ +   V   P + +I+++MA GSL   L    G      + + F+  +A GMAF
Sbjct: 241 QHDKLVKLHAVVTKEP-IYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAF 299
Query: 217 LH 218
           + 
Sbjct: 300 IE 301

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGA-RVNATNRGDDTPLHLAAAHGHLDIVRL 62
           V++ D+ G  PLH A KEGHL++VE L++  A  V   N   DT   LA  +G  ++V L
Sbjct: 96  VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSL 155
Query: 63  L 63
           +
Sbjct: 156 M 156

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGA-RVNATNRGDDTPLHLAAAHGHLDIVRL 62
           V++ D+ G  PLH A KEGHL++VE L++  A  V   N   DT   LA  +G  ++V L
Sbjct: 96  VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSL 155
Query: 63  L 63
           +
Sbjct: 156 M 156

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGA-RVNATNRGDDTPLHLAAAHGHLDIVRL 62
           V++ D+ G  PLH A KEGHL++VE L++  A  V   N   DT   LA  +G  ++V L
Sbjct: 96  VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSL 155
Query: 63  L 63
           +
Sbjct: 156 M 156

>pdb|3MPM|A Chain A, Lck Complexed With A Pyrazolopyrimidine Length = 267

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 104 LSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFSHPNVL 162
           L L  ++ +G  G+ W G +  +  VA K L   + +P     F  E   ++   H  ++
Sbjct: 11  LKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDA---FLAEANLMKQLQHQRLV 67
Query: 163 PVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS 219
            +   V   P + +I++YM  GSL   L   +GI +   + L  A  +A GMAF+  
Sbjct: 68  RLYAVVTQEP-IYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEE 123

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGA-RVNATNRGDDTPLHLAAAHGHLDIVRL 62
           V++ D+ G  PLH A KEGHL++VE L++  A  V   N   DT   LA  +G  ++V L
Sbjct: 96  VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSL 155
Query: 63  L 63
           +
Sbjct: 156 M 156

>pdb|3NZ0|A Chain A, Non-Phosphorylated Tyk2 Kinase With Cmp6 Length = 302

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 11/117 (9%)
Query: 126 NDIVAKILAVR----NCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPD--LVVISQ 179
           ND   +++AV+    +C P+    + +E   LR   H +++   GC     +  L ++ +
Sbjct: 39  NDGTGEMVAVKALKADCGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDQGEKSLQLVME 98
Query: 180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
           Y+  GSL   L   +   +  AQ L FA  +  GMA+LH+   I     L +R+V++
Sbjct: 99  YVPLGSLRDYLPRHS---IGLAQLLLFAQQICEGMAYLHAQHYI--HRNLAARNVLL 150

>pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck In Complex With Non-selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 104 LSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFSHPNVL 162
           L L  ++ +G  G+ W G +  +  VA K L   + +P     F  E   ++   H  ++
Sbjct: 15  LKLVERLGAGQAGEVWMGYYNGHTKVAVKSLKQGSMSPDA---FLAEANLMKQLQHQRLV 71
Query: 163 PVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS 219
            +   V   P + +I++YM  GSL   L   +GI +   + L  A  +A GMAF+  
Sbjct: 72  RLYAVVTQEP-IYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEE 127

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 8   DDHGFSPLHWACKEGHLKLVELLLQRGAR------VNATNRGDDTPLHLAAAHGHLDIVR 61
           D  G +PLH AC++G L  V +L Q          + ATN    T LHLA+ HG+L IV 
Sbjct: 72  DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVE 131
Query: 62  LL 63
           LL
Sbjct: 132 LL 133

>pdb|2R2P|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 5 (Epha5) Length = 295

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 70/146 (47%), Gaps = 11/146 (7%)
Query: 97  KGISLNDLSLHTKISSGPNGDTWRGRWQ---KNDIVAKILAVR-NCTPRVSRDFNEEFPK 152
           K I  + +++   I +G  G+   GR +   K ++   I  ++   T +  RDF  E   
Sbjct: 17  KEIEASCITIERVIGAGEFGEVCSGRLKLPGKRELPVAIKTLKVGYTEKQRRDFLGEASI 76
Query: 153 LRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALL--HEGAGIVVDFAQALRFAVDV 210
           +  F HPN++ + G V     ++++++YM  GSL   L  ++G   V+     LR    +
Sbjct: 77  MGQFDHPNIIHLEGVVTKSKPVMIVTEYMENGSLDTFLKKNDGQFTVIQLVGMLR---GI 133
Query: 211 ARGMAFLHSLERIIPQYQLNSRHVMV 236
           + GM +L  +  +     L +R++++
Sbjct: 134 SAGMKYLSDMGYV--HRDLAARNILI 157

>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length Carboxyl-Terminal Src Kinase At 2.5 A Resolution Length = 450

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 5/122 (4%)
Query: 98  GISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFS 157
            +++ +L L   I  G  GD   G ++ N +  K +         ++ F  E   +    
Sbjct: 189 ALNMKELKLLQTIGKGEFGDVMLGDYRGNKVAVKCIK----NDATAQAFLAEASVMTQLR 244
Query: 158 HPNVLPVIGC-VNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAF 216
           H N++ ++G  V     L ++++YMA GSL   L      V+     L+F++DV   M +
Sbjct: 245 HSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEY 304
Query: 217 LH 218
           L 
Sbjct: 305 LE 306

>pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1 Bound To Lck Length = 272

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 104 LSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFSHPNVL 162
           L L  ++ +G  G+ W G +  +  VA K L   + +P     F  E   ++   H  ++
Sbjct: 16  LKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDA---FLAEANLMKQLQHQRLV 72
Query: 163 PVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS 219
            +   V   P + +I++YM  GSL   L   +GI +   + L  A  +A GMAF+  
Sbjct: 73  RLYAVVTQEP-IYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEE 128

>pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck Length = 277

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 104 LSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFSHPNVL 162
           L L  ++ +G  G+ W G +  +  VA K L   + +P     F  E   ++   H  ++
Sbjct: 20  LKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDA---FLAEANLMKQLQHQRLV 76
Query: 163 PVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS 219
            +   V   P + +I++YM  GSL   L   +GI +   + L  A  +A GMAF+  
Sbjct: 77  RLYAVVTQEP-IYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEE 132

>pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck), Activated Form (Auto-Phosphorylated On Tyr394) Length = 271

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 104 LSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFSHPNVL 162
           L L  ++ +G  G+ W G +  +  VA K L   + +P     F  E   ++   H  ++
Sbjct: 15  LKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDA---FLAEANLMKQLQHQRLV 71
Query: 163 PVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS 219
            +   V   P + +I++YM  GSL   L   +GI +   + L  A  +A GMAF+  
Sbjct: 72  RLYAVVTQEP-IYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEE 127

>pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b Length = 277

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 104 LSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFSHPNVL 162
           L L  ++ +G  G+ W G +  +  VA K L   + +P     F  E   ++   H  ++
Sbjct: 21  LKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDA---FLAEANLMKQLQHQRLV 77
Query: 163 PVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS 219
            +   V   P + +I++YM  GSL   L   +GI +   + L  A  +A GMAF+  
Sbjct: 78  RLYAVVTQEP-IYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEE 133

>pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 269

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 5/122 (4%)
Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSH 158
           +++ +L L   I  G  GD   G ++ N +  K +         ++ F  E   +    H
Sbjct: 9   LNMKELKLLQTIGKGEFGDVMLGDYRGNKVAVKCIK----NDATAQAFLAEASVMTQLRH 64
Query: 159 PNVLPVIGC-VNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
            N++ ++G  V     L ++++YMA GSL   L      V+     L+F++DV   M +L
Sbjct: 65  SNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYL 124
Query: 218 HS 219
Sbjct: 125 EG 126

>pdb|4E20|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole Inhibitor Length = 290

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 9/100 (9%)
Query: 126 NDIVAKILAVR----NCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVV--ISQ 179
           ND   +++AV+     C P++   +  E   LR   H +++   GC     +  V  + +
Sbjct: 33  NDGTGEMVAVKALKEGCGPQLRSGWQREIEILRTLYHEHIVKYKGCCEDQGEKSVQLVME 92
Query: 180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS 219
           Y+  GSL   L       V  AQ L FA  +  GMA+LH+
Sbjct: 93  YVPLGSLRDYLPRHC---VGLAQLLLFAQQICEGMAYLHA 129

>pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck Length = 271

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 104 LSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFSHPNVL 162
           L L  ++ +G  G+ W G +  +  VA K L   + +P     F  E   ++   H  ++
Sbjct: 15  LKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDA---FLAEANLMKQLQHQRLV 71
Query: 163 PVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS 219
            +   V   P + +I++YM  GSL   L   +GI +   + L  A  +A GMAF+  
Sbjct: 72  RLYAVVTQEP-IYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEE 127

>pdb|4E1Z|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole Inhibitor Length = 291

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 9/100 (9%)
Query: 126 NDIVAKILAVR----NCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVV--ISQ 179
           ND   +++AV+     C P++   +  E   LR   H +++   GC     +  V  + +
Sbjct: 34  NDGTGEMVAVKALKEGCGPQLRSGWQREIEILRTLYHEHIVKYKGCCEDQGEKSVQLVME 93
Query: 180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS 219
           Y+  GSL   L       V  AQ L FA  +  GMA+LH+
Sbjct: 94  YVPLGSLRDYLPRHC---VGLAQLLLFAQQICEGMAYLHA 130

>pdb|2HK5|A Chain A, Hck Kinase In Complex With Lck Targetted Inhibitor Pg- 1009247 Length = 270

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 7/122 (5%)
Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTP--RVSRDFNEEFPKLRIF 156
           I    L L  K+ +G  G+ W   + K+  VA    V+   P       F  E   ++  
Sbjct: 12  IPRESLKLEKKLGAGQFGEVWMATYNKHTKVA----VKTMKPGSMSVEAFLAEANVMKTL 67
Query: 157 SHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAF 216
            H  ++ +   V   P + +I+++MA GSL   L    G      + + F+  +A GMAF
Sbjct: 68  QHDKLVKLHAVVTKEP-IYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAF 126
Query: 217 LH 218
           + 
Sbjct: 127 IE 128

>pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase Domain Of Human Lck, (Auto-Phosphorylated On Tyr394) Length = 285

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 104 LSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFSHPNVL 162
           L L  ++ +G  G+ W G +  +  VA K L   + +P     F  E   ++   H  ++
Sbjct: 21  LKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDA---FLAEANLMKQLQHQRLV 77
Query: 163 PVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS 219
            +   V   P + +I++YM  GSL   L   +GI +   + L  A  +A GMAF+  
Sbjct: 78  RLYAVVTQEP-IYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEE 133

>pdb|2PL0|A Chain A, Lck Bound To Imatinib Length = 289

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 104 LSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFSHPNVL 162
           L L  ++ +G  G+ W G +  +  VA K L   + +P     F  E   ++   H  ++
Sbjct: 25  LKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDA---FLAEANLMKQLQHQRLV 81
Query: 163 PVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS 219
            +   V   P + +I++YM  GSL   L   +GI +   + L  A  +A GMAF+  
Sbjct: 82  RLYAVVTQEP-IYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEE 137

>pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43 Bound To Lck Length = 273

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 104 LSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFSHPNVL 162
           L L  ++ +G  G+ W G +  +  VA K L   + +P     F  E   ++   H  ++
Sbjct: 17  LKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDA---FLAEANLMKQLQHQRLV 73
Query: 163 PVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS 219
            +   V   P + +I++YM  GSL   L   +GI +   + L  A  +A GMAF+  
Sbjct: 74  RLYAVVTQEP-IYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEE 129

>pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck In Complex With Non-Selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 104 LSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFSHPNVL 162
           L L  ++ +G  G+ W G +  +  VA K L   + +P     F  E   ++   H  ++
Sbjct: 15  LKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDA---FLAEANLMKQLQHQRLV 71
Query: 163 PVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS 219
            +   V   P + +I++YM  GSL   L   +GI +   + L  A  +A GMAF+  
Sbjct: 72  RLYAVVTQEP-IYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEE 127

>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule W259 Length = 287

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 104 LSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFSHPNVL 162
           L L  ++ +G  G+ W G +  +  VA K L   + +P     F  E   ++   H  ++
Sbjct: 23  LKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDA---FLAEANLMKQLQHQRLV 79
Query: 163 PVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS 219
            +   V   P + +I++YM  GSL   L   +GI +   + L  A  +A GMAF+  
Sbjct: 80  RLYAVVTQEP-IYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEE 135

>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2 Tyrosine Kinase Catalytic Domain Length = 264

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 61/139 (43%), Gaps = 7/139 (5%)
Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSH 158
           I  ++L+   +I SG  G    G W   D VA I  +R        DF EE   +   SH
Sbjct: 2   IDPSELTFVQEIGSGQFGLVHLGYWLNKDKVA-IKTIRE-GAMSEEDFIEEAEVMMKLSH 59
Query: 159 PNVLPVIG-CVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
           P ++ + G C+   P + ++ ++M  G L   L    G+       L   +DV  GMA+L
Sbjct: 60  PKLVQLYGVCLEQAP-ICLVFEFMEHGCLSDYLRTQRGLFAA-ETLLGMCLDVCEGMAYL 117
Query: 218 HSLERIIPQYQLNSRHVMV 236
              E  +    L +R+ +V
Sbjct: 118 E--EACVIHRDLAARNCLV 134

>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule Inhibitor Length = 288

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 104 LSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFSHPNVL 162
           L L  ++ +G  G+ W G +  +  VA K L   + +P     F  E   ++   H  ++
Sbjct: 24  LKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDA---FLAEANLMKQLQHQRLV 80
Query: 163 PVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS 219
            +   V   P + +I++YM  GSL   L   +GI +   + L  A  +A GMAF+  
Sbjct: 81  RLYAVVTQEP-IYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEE 136

>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase Itk Catalytic Domain With Thienopyrazolylindole Inhibitor 090 Length = 266

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 61/139 (43%), Gaps = 7/139 (5%)
Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSH 158
           I  ++L+   +I SG  G    G W   D VA I  +R        DF EE   +   SH
Sbjct: 4   IDPSELTFVQEIGSGQFGLVHLGYWLNKDKVA-IKTIRE-GAMSEEDFIEEAEVMMKLSH 61
Query: 159 PNVLPVIG-CVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
           P ++ + G C+   P + ++ ++M  G L   L    G+       L   +DV  GMA+L
Sbjct: 62  PKLVQLYGVCLEQAP-ICLVFEFMEHGCLSDYLRTQRGLFAA-ETLLGMCLDVCEGMAYL 119
Query: 218 HSLERIIPQYQLNSRHVMV 236
              E  +    L +R+ +V
Sbjct: 120 E--EACVIHRDLAARNCLV 136

>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 9/135 (6%)
Query: 93  LSRHKGISLNDLSLHTK-------ISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRD 145
           L + K  SL +L + +        +  G  G  ++GR     +VA        T      
Sbjct: 14  LGQLKRFSLRELQVASDNFXNKNILGRGGFGKVYKGRLADGXLVAVKRLKEERTQGGELQ 73
Query: 146 FNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHE--GAGIVVDFAQA 203
           F  E   + +  H N+L + G   +P + +++  YMA GS+ + L E   +   +D+ + 
Sbjct: 74  FQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKR 133
Query: 204 LRFAVDVARGMAFLH 218
            R A+  ARG+A+LH
Sbjct: 134 QRIALGSARGLAYLH 148

>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed With Compound 16 Length = 271

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 68/143 (47%), Gaps = 10/143 (6%)
Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFS- 157
           I   +L+L   I  G  G  +R  W  +++  K  A  +    +S+       + ++F+ 
Sbjct: 4   IDFAELTLEEIIGIGGFGKVYRAFWIGDEVAVKA-ARHDPDEDISQTIENVRQEAKLFAM 62
Query: 158 --HPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMA 215
             HPN++ + G     P+L ++ ++   G L  +L  G  I  D    + +AV +ARGM 
Sbjct: 63  LKHPNIIALRGVCLKEPNLCLVMEFARGGPLNRVL-SGKRIPPDI--LVNWAVQIARGMN 119
Query: 216 FLHSLERIIP--QYQLNSRHVMV 236
           +LH  E I+P     L S ++++
Sbjct: 120 YLHD-EAIVPIIHRDLKSSNILI 141

>pdb|2J0K|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase Containing The Ferm And Kinase Domains. Length = 656

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/136 (23%), Positives = 62/136 (45%), Gaps = 12/136 (8%)
Query: 88  SRDATLSRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFN 147
           +RD  + R +      + L   I  G  GD  +G +   +  A  +A++ C    S    
Sbjct: 382 TRDYEIQRER------IELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVR 435
Query: 148 EEFPK----LRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQA 203
           E+F +    +R F HP+++ +IG +   P + +I +    G L + L +     +D A  
Sbjct: 436 EKFLQEALTMRQFDHPHIVKLIGVITENP-VWIIMELCTLGELRSFL-QVRKFSLDLASL 493
Query: 204 LRFAVDVARGMAFLHS 219
           + +A  ++  +A+L S
Sbjct: 494 ILYAYQLSTALAYLES 509

>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52 Length = 269

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 61/139 (43%), Gaps = 7/139 (5%)
Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSH 158
           I  ++L+   +I SG  G    G W   D VA I  +R        DF EE   +   SH
Sbjct: 7   IDPSELTFVQEIGSGQFGLVHLGYWLNKDKVA-IKTIRE-GAMSEEDFIEEAEVMMKLSH 64
Query: 159 PNVLPVIG-CVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
           P ++ + G C+   P + ++ ++M  G L   L    G+       L   +DV  GMA+L
Sbjct: 65  PKLVQLYGVCLEQAP-ICLVFEFMEHGCLSDYLRTQRGLFAA-ETLLGMCLDVCEGMAYL 122
Query: 218 HSLERIIPQYQLNSRHVMV 236
              E  +    L +R+ +V
Sbjct: 123 E--EACVIHRDLAARNCLV 139

>pdb|3GU8|A Chain A, Crystal Structure Of Dapkl93g With N6-Cyclopentyladenosine Length = 295

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 142 VSR-DFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDF 200
           VSR D   E   L+   HPNV+ +     +  D+++I + +A G L+  L E   +  + 
Sbjct: 56  VSREDIEREVSILKEIQHPNVITLHEVYENKTDVILIGELVAGGELFDFLAEKESLTEE- 114
Query: 201 AQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
            +A  F   +  G+ +LHSL+  I  + L   ++M+
Sbjct: 115 -EATEFLKQILNGVYYLHSLQ--IAHFDLKPENIML 147

>pdb|2J0J|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase Containing The Ferm And Kinase Domains Length = 656

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/136 (23%), Positives = 62/136 (45%), Gaps = 12/136 (8%)
Query: 88  SRDATLSRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFN 147
           +RD  + R +      + L   I  G  GD  +G +   +  A  +A++ C    S    
Sbjct: 382 TRDYEIQRER------IELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVR 435
Query: 148 EEFPK----LRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQA 203
           E+F +    +R F HP+++ +IG +   P + +I +    G L + L +     +D A  
Sbjct: 436 EKFLQEALTMRQFDHPHIVKLIGVITENP-VWIIMELCTLGELRSFL-QVRKFSLDLASL 493
Query: 204 LRFAVDVARGMAFLHS 219
           + +A  ++  +A+L S
Sbjct: 494 ILYAYQLSTALAYLES 509

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%)
Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           V+  D  G +PL W+   G+ ++   LL+ GA VN  N   +TPL +A+ +G  +IV+ L
Sbjct: 94  VNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKL 153

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 35/60 (58%)
Query: 4  VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
          V+  D+ GF+PL WA   G ++ V  LL+ GA  +   +  ++ L LA+  G+ DIV LL
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLL 88

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 35/60 (58%)
Query: 4  VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
          V+  D+ GF+PL WA   G ++ V  LL+ GA  +   +  ++ L LA+  G+ DIV LL
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLL 88

>pdb|2Y0A|A Chain A, Structure Of Dapk1 Construct Residues 1-304 Length = 326

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 142 VSR-DFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDF 200
           VSR D   E   L+   HPNV+ +     +  D+++I + +A G L+  L E   +  + 
Sbjct: 56  VSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEE- 114
Query: 201 AQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
            +A  F   +  G+ +LHSL+  I  + L   ++M+
Sbjct: 115 -EATEFLKQILNGVYYLHSLQ--IAHFDLKPENIML 147

>pdb|2XUU|A Chain A, Crystal Structure Of A Dap-Kinase 1 Mutant Length = 334

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 142 VSR-DFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDF 200
           VSR D   E   L+   HPNV+ +     +  D+++I + +A G L+  L E   +  + 
Sbjct: 56  VSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEE- 114
Query: 201 AQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
            +A  F   +  G+ +LHSL+  I  + L   ++M+
Sbjct: 115 -EATEFLKQILNGVYYLHSLQ--IAHFDLKPENIML 147

>pdb|2X0G|A Chain A, X-ray Structure Of A Dap-kinase Calmodulin Complex Length = 334

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 142 VSR-DFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDF 200
           VSR D   E   L+   HPNV+ +     +  D+++I + +A G L+  L E   +  + 
Sbjct: 56  VSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEE- 114
Query: 201 AQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
            +A  F   +  G+ +LHSL+  I  + L   ++M+
Sbjct: 115 -EATEFLKQILNGVYYLHSLQ--IAHFDLKPENIML 147

>pdb|2JKK|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With Bis- Anilino Pyrimidine Inhibitor Length = 276

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/136 (23%), Positives = 62/136 (45%), Gaps = 12/136 (8%)
Query: 88  SRDATLSRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFN 147
           +RD  + R +      + L   I  G  GD  +G +   +  A  +A++ C    S    
Sbjct: 2   TRDYEIQRER------IELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVR 55
Query: 148 EEFPK----LRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQA 203
           E+F +    +R F HP+++ +IG +   P + +I +    G L + L +     +D A  
Sbjct: 56  EKFLQEALTMRQFDHPHIVKLIGVITENP-VWIIMELCTLGELRSFL-QVRKFSLDLASL 113
Query: 204 LRFAVDVARGMAFLHS 219
           + +A  ++  +A+L S
Sbjct: 114 ILYAYQLSTALAYLES 129

>pdb|2XZS|A Chain A, Death Associated Protein Kinase 1 Residues 1-312 Length = 312

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 142 VSR-DFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDF 200
           VSR D   E   L+   HPNV+ +     +  D+++I + +A G L+  L E   +  + 
Sbjct: 56  VSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEE- 114
Query: 201 AQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
            +A  F   +  G+ +LHSL+  I  + L   ++M+
Sbjct: 115 -EATEFLKQILNGVYYLHSLQ--IAHFDLKPENIML 147

>pdb|2W4K|A Chain A, X-Ray Structure Of A Dap-Kinase 2-302 Length = 302

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 142 VSR-DFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDF 200
           VSR D   E   L+   HPNV+ +     +  D+++I + +A G L+  L E   +  + 
Sbjct: 56  VSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEE- 114
Query: 201 AQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
            +A  F   +  G+ +LHSL+  I  + L   ++M+
Sbjct: 115 -EATEFLKQILNGVYYLHSLQ--IAHFDLKPENIML 147

>pdb|2J0L|A Chain A, Crystal Structure Of A The Active Conformation Of The Kinase Domain Of Focal Adhesion Kinase With A Phosphorylated Activation Loop Length = 276

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/136 (23%), Positives = 62/136 (45%), Gaps = 12/136 (8%)
Query: 88  SRDATLSRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFN 147
           +RD  + R +      + L   I  G  GD  +G +   +  A  +A++ C    S    
Sbjct: 2   TRDYEIQRER------IELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVR 55
Query: 148 EEFPK----LRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQA 203
           E+F +    +R F HP+++ +IG +   P + +I +    G L + L +     +D A  
Sbjct: 56  EKFLQEALTMRQFDHPHIVKLIGVITENP-VWIIMELCTLGELRSFL-QVRKFSLDLASL 113
Query: 204 LRFAVDVARGMAFLHS 219
           + +A  ++  +A+L S
Sbjct: 114 ILYAYQLSTALAYLES 129

>pdb|2YAK|A Chain A, Structure Of Death-Associated Protein Kinase 1 (Dapk1) In Complex With A Ruthenium Octasporine Ligand (Osv) Length = 285

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 142 VSR-DFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDF 200
           VSR D   E   L+   HPNV+ +     +  D+++I + +A G L+  L E   +  + 
Sbjct: 56  VSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEE- 114
Query: 201 AQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
            +A  F   +  G+ +LHSL+  I  + L   ++M+
Sbjct: 115 -EATEFLKQILNGVYYLHSLQ--IAHFDLKPENIML 147

>pdb|3DFC|B Chain B, Crystal Structure Of A Glycine-Rich Loop Mutant Of The Death Associated Protein Kinase Catalytic Domain With Amppnp Length = 295

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 142 VSR-DFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDF 200
           VSR D   E   L+   HPNV+ +     +  D+++I + +A G L+  L E   +  + 
Sbjct: 56  VSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEE- 114
Query: 201 AQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
            +A  F   +  G+ +LHSL+  I  + L   ++M+
Sbjct: 115 -EATEFLKQILNGVYYLHSLQ--IAHFDLKPENIML 147

>pdb|2IVT|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase Domain Length = 314

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 61/139 (43%), Gaps = 25/139 (17%)
Query: 120 RGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQ 179
           +GR     +  K+L   N +P   RD   EF  L+  +HP+V+ + G  +    L++I +
Sbjct: 48  KGRAGYTTVAVKMLK-ENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGPLLLIVE 106
Query: 180 YMAWGSLYALLHE----GAGIV------------------VDFAQALRFAVDVARGMAFL 217
           Y  +GSL   L E    G G +                  +     + FA  +++GM +L
Sbjct: 107 YAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYL 166
Query: 218 HSLERIIPQYQLNSRHVMV 236
             ++ +     L +R+++V
Sbjct: 167 AEMKLV--HRDLAARNILV 183

>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib Length = 266

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 61/139 (43%), Gaps = 7/139 (5%)
Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSH 158
           I  ++L+   +I SG  G    G W   D VA I  +R        DF EE   +   SH
Sbjct: 4   IDPSELTFVQEIGSGQFGLVHLGYWLNKDKVA-IKTIRE-GAMSEEDFIEEAEVMMKLSH 61
Query: 159 PNVLPVIG-CVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
           P ++ + G C+   P + ++ ++M  G L   L    G+       L   +DV  GMA+L
Sbjct: 62  PKLVQLYGVCLEQAP-ICLVFEFMEHGCLSDYLRTQRGLFAA-ETLLGMCLDVCEGMAYL 119
Query: 218 HSLERIIPQYQLNSRHVMV 236
              E  +    L +R+ +V
Sbjct: 120 E--EASVIHRDLAARNCLV 136

>pdb|1P4F|A Chain A, Death Associated Protein Kinase Catalytic Domain With Bound Inhibitor Fragment Length = 293

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 142 VSR-DFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDF 200
           VSR D   E   L+   HPNV+ +     +  D+++I + +A G L+  L E   +  + 
Sbjct: 55  VSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEE- 113
Query: 201 AQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
            +A  F   +  G+ +LHSL+  I  + L   ++M+
Sbjct: 114 -EATEFLKQILNGVYYLHSLQ--IAHFDLKPENIML 146

>pdb|3GU4|A Chain A, Crystal Structure Of Dapkq23v-Amppnp Length = 295

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 142 VSR-DFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDF 200
           VSR D   E   L+   HPNV+ +     +  D+++I + +A G L+  L E   +  + 
Sbjct: 56  VSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEE- 114
Query: 201 AQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
            +A  F   +  G+ +LHSL+  I  + L   ++M+
Sbjct: 115 -EATEFLKQILNGVYYLHSLQ--IAHFDLKPENIML 147

>pdb|2IVS|A Chain A, Crystal Structure Of Non-Phosphorylated Ret Tyrosine Kinase Domain Length = 314

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 61/139 (43%), Gaps = 25/139 (17%)
Query: 120 RGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQ 179
           +GR     +  K+L   N +P   RD   EF  L+  +HP+V+ + G  +    L++I +
Sbjct: 48  KGRAGYTTVAVKMLK-ENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGPLLLIVE 106
Query: 180 YMAWGSLYALLHE----GAGIV------------------VDFAQALRFAVDVARGMAFL 217
           Y  +GSL   L E    G G +                  +     + FA  +++GM +L
Sbjct: 107 YAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYL 166
Query: 218 HSLERIIPQYQLNSRHVMV 236
             ++ +     L +R+++V
Sbjct: 167 AEMKLV--HRDLAARNILV 183

>pdb|3F5U|A Chain A, Crystal Structure Of The Death Associated Protein Kinase In Complex With Amppnp And Mg2+ Length = 295

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 142 VSR-DFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDF 200
           VSR D   E   L+   HPNV+ +     +  D+++I + +A G L+  L E   +  + 
Sbjct: 56  VSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEE- 114
Query: 201 AQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
            +A  F   +  G+ +LHSL+  I  + L   ++M+
Sbjct: 115 -EATEFLKQILNGVYYLHSLQ--IAHFDLKPENIML 147

>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 2/126 (1%)
Query: 95  RHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLR 154
           R   ++ ++ S    +  G  G  ++GR     +VA               F  E   + 
Sbjct: 31  RELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERXQGGELQFQTEVEMIS 90
Query: 155 IFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHE--GAGIVVDFAQALRFAVDVAR 212
           +  H N+L + G   +P + +++  YMA GS+ + L E   +   +D+ +  R A+  AR
Sbjct: 91  MAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSAR 150
Query: 213 GMAFLH 218
           G+A+LH
Sbjct: 151 GLAYLH 156

>pdb|1WVW|A Chain A, Crystal Structures Of Kinase Domain Of Dap Kinase In Complex With Small Molecular Inhibitors Length = 278

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 142 VSR-DFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDF 200
           VSR D   E   L+   HPNV+ +     +  D+++I + +A G L+  L E   +  + 
Sbjct: 56  VSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEE- 114
Query: 201 AQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
            +A  F   +  G+ +LHSL+  I  + L   ++M+
Sbjct: 115 -EATEFLKQILNGVYYLHSLQ--IAHFDLKPENIML 147

>pdb|2W4J|A Chain A, X-Ray Structure Of A Dap-Kinase 2-277 Length = 277

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 142 VSR-DFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDF 200
           VSR D   E   L+   HPNV+ +     +  D+++I + +A G L+  L E   +  + 
Sbjct: 56  VSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEE- 114
Query: 201 AQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
            +A  F   +  G+ +LHSL+  I  + L   ++M+
Sbjct: 115 -EATEFLKQILNGVYYLHSLQ--IAHFDLKPENIML 147

>pdb|1IG1|A Chain A, 1.8a X-Ray Structure Of Ternary Complex Of A Catalytic Domain Of Death-Associated Protein Kinase With Atp Analogue And Mn. Length = 294

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 142 VSR-DFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDF 200
           VSR D   E   L+   HPNV+ +     +  D+++I + +A G L+  L E   +  + 
Sbjct: 55  VSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEE- 113
Query: 201 AQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
            +A  F   +  G+ +LHSL+  I  + L   ++M+
Sbjct: 114 -EATEFLKQILNGVYYLHSLQ--IAHFDLKPENIML 146

>pdb|2JKM|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With Bis- Anilino Pyrimidine Inhibitor Length = 276

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/136 (23%), Positives = 62/136 (45%), Gaps = 12/136 (8%)
Query: 88  SRDATLSRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFN 147
           +RD  + R +      + L   I  G  GD  +G +   +  A  +A++ C    S    
Sbjct: 2   TRDYEIQRER------IELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVR 55
Query: 148 EEFPK----LRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQA 203
           E+F +    +R F HP+++ +IG +   P + +I +    G L + L +     +D A  
Sbjct: 56  EKFLQEALTMRQFDHPHIVKLIGVITENP-VWIIMELCTLGELRSFL-QVRKYSLDLASL 113
Query: 204 LRFAVDVARGMAFLHS 219
           + +A  ++  +A+L S
Sbjct: 114 ILYAYQLSTALAYLES 129

>pdb|4EBW|A Chain A, Structure Of Focal Adhesion Kinase Catalytic Domain In Complex With Novel Allosteric Inhibitor Length = 304

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/141 (22%), Positives = 64/141 (45%), Gaps = 12/141 (8%)
Query: 83  GLKTRSRDATLSRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRV 142
            + + +RD  + R +      + L   I  G  GD  +G +   +  A  +A++ C    
Sbjct: 25  AMGSSTRDYEIQRER------IELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCT 78
Query: 143 SRDFNEEFPK----LRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVV 198
           S    E+F +    +R F HP+++ +IG +   P + +I +    G L + L +     +
Sbjct: 79  SDSVREKFLQEALTMRQFDHPHIVKLIGVITENP-VWIIMELCTLGELRSFL-QVRKYSL 136
Query: 199 DFAQALRFAVDVARGMAFLHS 219
           D A  + +A  ++  +A+L S
Sbjct: 137 DLASLILYAYQLSTALAYLES 157

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 11  GFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQD 70
           G SPL  A +   L +V+LLLQ GA VNA      + LH A+  G L +VR L V++  D
Sbjct: 150 GRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTL-VRSGAD 208
Query: 71  LTKINFKDQSWLGLKTRSR 89
            +  N  + + L +  RSR
Sbjct: 209 SSLKNCHNDTPL-MVARSR 226

>pdb|1MP8|A Chain A, Crystal Structure Of Focal Adhesion Kinase (Fak) Length = 281

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/141 (22%), Positives = 64/141 (45%), Gaps = 12/141 (8%)
Query: 83  GLKTRSRDATLSRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRV 142
            + + +RD  + R +      + L   I  G  GD  +G +   +  A  +A++ C    
Sbjct: 2   AMGSSTRDYEIQRER------IELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCT 55
Query: 143 SRDFNEEFPK----LRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVV 198
           S    E+F +    +R F HP+++ +IG +   P + +I +    G L + L +     +
Sbjct: 56  SDSVREKFLQEALTMRQFDHPHIVKLIGVITENP-VWIIMELCTLGELRSFL-QVRKYSL 113
Query: 199 DFAQALRFAVDVARGMAFLHS 219
           D A  + +A  ++  +A+L S
Sbjct: 114 DLASLILYAYQLSTALAYLES 134

>pdb|2IVV|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase Domain Complexed With The Inhibitor Pp1 Length = 314

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 60/139 (43%), Gaps = 25/139 (17%)
Query: 120 RGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQ 179
           +GR     +  K+L   N +P   RD   EF  L+  +HP+V+ + G  +    L++I +
Sbjct: 48  KGRAGYTTVAVKMLK-ENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGPLLLIVE 106
Query: 180 YMAWGSLYALLHE----GAGIV------------------VDFAQALRFAVDVARGMAFL 217
           Y  +GSL   L E    G G +                  +     + FA  +++GM +L
Sbjct: 107 YAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYL 166
Query: 218 HSLERIIPQYQLNSRHVMV 236
             +  +     L +R+++V
Sbjct: 167 AEMSLV--HRDLAARNILV 183

>pdb|2J0M|B Chain B, Crystal Structure A Two-Chain Complex Between The Ferm And Kinase Domains Of Focal Adhesion Kinase. Length = 276

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/136 (23%), Positives = 62/136 (45%), Gaps = 12/136 (8%)
Query: 88  SRDATLSRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFN 147
           +RD  + R +      + L   I  G  GD  +G +   +  A  +A++ C    S    
Sbjct: 2   TRDYEIQRER------IELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVR 55
Query: 148 EEFPK----LRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQA 203
           E+F +    +R F HP+++ +IG +   P + +I +    G L + L +     +D A  
Sbjct: 56  EKFLQEALTMRQFDHPHIVKLIGVITENP-VWIIMELCTLGELRSFL-QVRKYSLDLASL 113
Query: 204 LRFAVDVARGMAFLHS 219
           + +A  ++  +A+L S
Sbjct: 114 ILYAYQLSTALAYLES 129

>pdb|2ETM|A Chain A, Crystal Structure Of Focal Adhesion Kinase Domain Complexed With 7h-Pyrrolo [2,3-D] Pyrimidine Derivative Length = 281

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/136 (23%), Positives = 62/136 (45%), Gaps = 12/136 (8%)
Query: 88  SRDATLSRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFN 147
           +RD  + R +      + L   I  G  GD  +G +   +  A  +A++ C    S    
Sbjct: 4   TRDYEIQRER------IELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVR 57
Query: 148 EEFPK----LRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQA 203
           E+F +    +R F HP+++ +IG +   P + +I +    G L + L +     +D A  
Sbjct: 58  EKFLQEALTMRQFDHPHIVKLIGVITENP-VWIIMELCTLGELRSFL-QVRKYSLDLASL 115
Query: 204 LRFAVDVARGMAFLHS 219
           + +A  ++  +A+L S
Sbjct: 116 ILYAYQLSTALAYLES 131

>pdb|3PXK|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With Pyrrolo[2,3- D]thiazole Length = 282

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/136 (23%), Positives = 62/136 (45%), Gaps = 12/136 (8%)
Query: 88  SRDATLSRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFN 147
           +RD  + R +      + L   I  G  GD  +G +   +  A  +A++ C    S    
Sbjct: 5   TRDYEIQRER------IELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVR 58
Query: 148 EEFPK----LRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQA 203
           E+F +    +R F HP+++ +IG +   P + +I +    G L + L +     +D A  
Sbjct: 59  EKFLQEALTMRQFDHPHIVKLIGVITENP-VWIIMELCTLGELRSFL-QVRKYSLDLASL 116
Query: 204 LRFAVDVARGMAFLHS 219
           + +A  ++  +A+L S
Sbjct: 117 ILYAYQLSTALAYLES 132

>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 35/74 (47%)
Query: 2   YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVR 61
           Y V   D  G +PL+ A     +++ + L+ RGA +N  N   D+P   A A G  +I+ 
Sbjct: 30  YQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILA 89
Query: 62  LLAVQNNQDLTKIN 75
            +      DL K N
Sbjct: 90  YMLKHATPDLNKHN 103

>pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 73/153 (47%), Gaps = 10/153 (6%)
Query: 94  SRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAV-----RNCTPRVSR--DF 146
           SR   ++ N++    +I  G  G   +GR  K+  V  I ++        T  + +  +F
Sbjct: 11  SRLPTLADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEF 70
Query: 147 NEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRF 206
             E   +   +HPN++ + G +++PP +V+  +++  G LY  L + A   + ++  LR 
Sbjct: 71  QREVFIMSNLNHPNIVKLYGLMHNPPRMVM--EFVPCGDLYHRLLDKAH-PIKWSVKLRL 127
Query: 207 AVDVARGMAFLHSLERIIPQYQLNSRHVMVYIL 239
            +D+A G+ ++ +    I    L S ++ +  L
Sbjct: 128 MLDIALGIEYMQNQNPPIVHRDLRSPNIFLQSL 160

>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain From D. Discoideum Bound To Appcp Length = 287

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 73/153 (47%), Gaps = 10/153 (6%)
Query: 94  SRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAV-----RNCTPRVSR--DF 146
           SR   ++ N++    +I  G  G   +GR  K+  V  I ++        T  + +  +F
Sbjct: 11  SRLPTLADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEF 70
Query: 147 NEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRF 206
             E   +   +HPN++ + G +++PP +V+  +++  G LY  L + A   + ++  LR 
Sbjct: 71  QREVFIMSNLNHPNIVKLYGLMHNPPRMVM--EFVPCGDLYHRLLDKAH-PIKWSVKLRL 127
Query: 207 AVDVARGMAFLHSLERIIPQYQLNSRHVMVYIL 239
            +D+A G+ ++ +    I    L S ++ +  L
Sbjct: 128 MLDIALGIEYMQNQNPPIVHRDLRSPNIFLQSL 160

>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 73/153 (47%), Gaps = 10/153 (6%)
Query: 94  SRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAV-----RNCTPRVSR--DF 146
           SR   ++ N++    +I  G  G   +GR  K+  V  I ++        T  + +  +F
Sbjct: 11  SRLPTLADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEF 70
Query: 147 NEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRF 206
             E   +   +HPN++ + G +++PP +V+  +++  G LY  L + A   + ++  LR 
Sbjct: 71  QREVFIMSNLNHPNIVKLYGLMHNPPRMVM--EFVPCGDLYHRLLDKAH-PIKWSVKLRL 127
Query: 207 AVDVARGMAFLHSLERIIPQYQLNSRHVMVYIL 239
            +D+A G+ ++ +    I    L S ++ +  L
Sbjct: 128 MLDIALGIEYMQNQNPPIVHRDLRSPNIFLQSL 160

>pdb|4H1J|A Chain A, Crystal Structure Of Pyk2 With The Pyrazole 13a Length = 293

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 28/131 (21%), Positives = 59/131 (45%), Gaps = 6/131 (4%)
Query: 94  SRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPK- 152
           S   GI+  D+ L+  +  G  G+ + G +  +      +AV+ C    + D  E+F   
Sbjct: 16  SPQYGIAREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSE 75
Query: 153 ---LRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVD 209
              ++   HP+++ +IG +   P  +++  Y  +G L   L      +      L +++ 
Sbjct: 76  AVIMKNLDHPHIVKLIGIIEEEPTWIIMELY-PYGELGHYLERNKNSLKVLTLVL-YSLQ 133
Query: 210 VARGMAFLHSL 220
           + + MA+L S+
Sbjct: 134 ICKAMAYLESI 144

>pdb|3FZO|A Chain A, Crystal Structure Of Pyk2-Apo, Proline-Rich Tyrosine Kinase Length = 277

Iteration: 1
 Score = 40.4 bits (93), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 27/127 (21%), Positives = 58/127 (45%), Gaps = 6/127 (4%)
Query: 98  GISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPK----L 153
           GI+  D+ L+  +  G  G+ + G +  +      +AV+ C    + D  E+F      +
Sbjct: 4   GIAREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIM 63
Query: 154 RIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARG 213
           +   HP+++ +IG +   P  +++  Y  +G L   L      +      L +++ + + 
Sbjct: 64  KNLDHPHIVKLIGIIEEEPTWIIMELY-PYGELGHYLERNKNSLKVLTLVL-YSLQICKA 121
Query: 214 MAFLHSL 220
           MA+L S+
Sbjct: 122 MAYLESI 128

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	239
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	4e-63
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	8e-31
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	7e-28
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	1e-27
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	2e-27
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	2e-27
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	6e-27
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	7e-25
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-18
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	5e-11
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	6e-27
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	5e-26
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	1e-25
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-23
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	8e-23
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	8e-21
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	7e-07
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-06
3v30_A	172	DNA-binding protein rfxank; structural genomics co	6e-23
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-22
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-21
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-18
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-11
3v30_A	172	DNA-binding protein rfxank; structural genomics co	7e-06
3q4u_A	301	Activin receptor type-1; structural genomics conso	8e-23
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-22
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-22
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-21
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-20
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-09
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-22
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-21
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-07
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	3e-22
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-22
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-20
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-19
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	4e-22
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	5e-22
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-21
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-20
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-19
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-17
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-06
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-21
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-20
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	6e-12
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-21
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-21
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-20
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	9e-07
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-21
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-20
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-19
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	4e-08
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	9e-08
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-21
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-20
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-20
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-20
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-20
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-20
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-20
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-20
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-19
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-19
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-19
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-07
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	9e-07
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-21
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-21
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-20
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-15
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-13
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-12
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-21
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	9e-20
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-19
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-19
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-18
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-17
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-06
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-21
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-19
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	7e-18
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-17
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-17
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-16
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-15
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-14
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	9e-12
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-10
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-05
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-20
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-19
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-19
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	6e-16
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-04
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-20
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-20
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-20
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-20
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-19
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-17
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-17
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-05
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-20
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-20
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-19
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-17
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	6e-04
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-20
3hra_A	201	Ankyrin repeat family protein; structural protein;	7e-19
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-18
3hra_A	201	Ankyrin repeat family protein; structural protein;	5e-16
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-15
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-04
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-20
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	9e-20
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	6e-19
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-16
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-20
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	6e-20
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	9e-20
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-19
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-19
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-17
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-04
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-20
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-20
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-20
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-19
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-19
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-18
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-10
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-09
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	7e-06
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-20
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-19
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-19
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-12
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-20
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	7e-20
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-19
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-17
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-16
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-14
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-09
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	8e-08
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-20
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-19
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-18
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-18
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-18
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-13
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-12
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-06
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	6e-20
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-19
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-18
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	9e-18
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-17
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-05
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-04
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	6e-20
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	4e-16
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-13
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	7e-20
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-19
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	4e-18
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-15
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-20
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-19
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-19
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-18
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	9e-17
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-16
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-13
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-10
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-07
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-05
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	9e-20
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-18
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-18
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-17
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-17
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	9e-17
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	9e-15
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-08
3soc_A	322	Activin receptor type-2A; structural genomics cons	9e-20
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	1e-19
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-19
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	6e-19
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	6e-18
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-17
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-05
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-19
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-18
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-18
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-18
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-17
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-11
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-19
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-19
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	5e-18
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	6e-17
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-16
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	5e-13
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-19
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-19
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-18
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-16
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	9e-16
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-14
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-12
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-19
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-19
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-17
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	9e-16
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-15
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-14
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-13
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-13
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-07
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-05
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	4e-19
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	8e-18
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	6e-17
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	4e-15
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	9e-08
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	4e-19
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-18
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-16
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-04
2etb_A	256	Transient receptor potential cation channel subfam	4e-19
2etb_A	256	Transient receptor potential cation channel subfam	2e-16
2etb_A	256	Transient receptor potential cation channel subfam	7e-11
2etb_A	256	Transient receptor potential cation channel subfam	2e-10
2etb_A	256	Transient receptor potential cation channel subfam	1e-08
2etb_A	256	Transient receptor potential cation channel subfam	3e-04
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-19
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-16
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	8e-10
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	8e-10
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-07
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	7e-04
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-19
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-18
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-18
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	8e-18
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-15
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-13
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-04
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-19
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	7e-19
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-18
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	8e-18
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-16
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-09
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	9e-06
2pnn_A	273	Transient receptor potential cation channel subfa	7e-19
2pnn_A	273	Transient receptor potential cation channel subfa	3e-14
2pnn_A	273	Transient receptor potential cation channel subfa	7e-12
2pnn_A	273	Transient receptor potential cation channel subfa	2e-11
2pnn_A	273	Transient receptor potential cation channel subfa	3e-11
2pnn_A	273	Transient receptor potential cation channel subfa	7e-08
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	9e-19
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	9e-19
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-18
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-17
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-10
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-18
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	7e-18
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-16
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-14
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-12
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-07
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-18
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-15
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-11
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-11
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-11
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	7e-11
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	7e-18
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-13
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	4e-13
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	6e-12
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	8e-11
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-07
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	1e-17
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-17
3jxi_A	260	Vanilloid receptor-related osmotically activated p	8e-10
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-09
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-09
3jxi_A	260	Vanilloid receptor-related osmotically activated p	4e-09
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-07
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	3e-17
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	4e-17
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	6e-17
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-16
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	7e-16
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-10
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	2e-16
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	2e-16
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	2e-16
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	3e-16
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	3e-16
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	5e-16
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	1e-15
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	1e-15
2rfa_A	232	Transient receptor potential cation channel subfa	2e-15
2rfa_A	232	Transient receptor potential cation channel subfa	3e-15
2rfa_A	232	Transient receptor potential cation channel subfa	4e-15
2rfa_A	232	Transient receptor potential cation channel subfa	1e-13
2rfa_A	232	Transient receptor potential cation channel subfa	2e-12
2rfa_A	232	Transient receptor potential cation channel subfa	3e-08
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	2e-15
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	4e-15
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	6e-15
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	6e-15
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-14
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	5e-10
3pls_A	298	Macrophage-stimulating protein receptor; protein k	1e-14
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-14
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-13
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-07
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-06
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-05
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	2e-14
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	2e-14
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	3e-14
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-09
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	3e-14
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	3e-14
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	1e-13
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	1e-13
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	2e-13
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	2e-13
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	2e-13
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	3e-13
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	3e-13
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	5e-13
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	5e-13
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	5e-13
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	7e-13
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	7e-13
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	8e-13
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	1e-12
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	3e-12
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	4e-12
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	4e-12
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	1e-11
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	1e-10
4aoj_A	329	High affinity nerve growth factor receptor; transf	3e-11
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	3e-11
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	3e-11
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	6e-11
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	6e-11
3zzw_A	289	Tyrosine-protein kinase transmembrane receptor RO;	6e-11
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	4e-10
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	6e-10
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	1e-09
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	5e-09
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	7e-09
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	6e-09
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	7e-09
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	8e-09
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	2e-08
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	5e-08
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	5e-08
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	6e-07
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	5e-06
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	2e-05
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	5e-05
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	5e-05
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	8e-05
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	2e-04
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	2e-04

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score =  197 bits (503), Expect = 4e-63
 Identities = 81/146 (55%), Positives = 110/146 (75%), Gaps = 2/146 (1%)

Query: 93  LSRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPK 152
           +++H GI    L+  TK++   +G+ W+GRWQ NDIV K+L VR+ + R SRDFNEE P+
Sbjct: 1   MNKHSGIDFKQLNFLTKLNENHSGELWKGRWQGNDIVVKVLKVRDWSTRKSRDFNEECPR 60

Query: 153 LRIFSHPNVLPVIGCVNSPP--DLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDV 210
           LRIFSHPNVLPV+G   SPP     +I+ +M +GSLY +LHEG   VVD +QA++FA+D+
Sbjct: 61  LRIFSHPNVLPVLGACQSPPAPHPTLITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDM 120

Query: 211 ARGMAFLHSLERIIPQYQLNSRHVMV 236
           ARGMAFLH+LE +IP++ LNSR VM+
Sbjct: 121 ARGMAFLHTLEPLIPRHALNSRSVMI 146

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score =  114 bits (288), Expect = 8e-31
 Identities = 44/127 (34%), Positives = 70/127 (55%), Gaps = 1/127 (0%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSH 158
           I   DL++  KI +G  G   R  W  +D+  KIL  ++       +F  E   ++   H
Sbjct: 34  IPWCDLNIKEKIGAGSFGTVHRAEWHGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRH 93

Query: 159 PNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHE-GAGIVVDFAQALRFAVDVARGMAFL 217
           PN++  +G V  PP+L ++++Y++ GSLY LLH+ GA   +D  + L  A DVA+GM +L
Sbjct: 94  PNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYL 153

Query: 218 HSLERII 224
           H+    I
Sbjct: 154 HNRNPPI 160

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score =  107 bits (268), Expect = 7e-28
 Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 1/125 (0%)

Query: 95  RHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLR 154
            H+    +DL     +  G  G   +   ++   V  +  +        R F +E   +R
Sbjct: 3   PHRIFRPSDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMR 62

Query: 155 IFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGM 214
              HPNVL  IG +     L  I++Y+  G+L  ++         ++Q + FA D+A GM
Sbjct: 63  CLEHPNVLKFIGVLYKDKRLNFITEYIKGGTLRGIIKS-MDSQYPWSQRVSFAKDIASGM 121

Query: 215 AFLHS 219
           A+LHS
Sbjct: 122 AYLHS 126

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score =  105 bits (265), Expect = 1e-27
 Identities = 30/133 (22%), Positives = 63/133 (47%), Gaps = 10/133 (7%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKND-IVA-KILAVRNCTPRVS-----RDFNEEFP 151
           ++ N++    +I  G  G   +GR  K+  +VA K L + +           ++F  E  
Sbjct: 16  LADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVF 75

Query: 152 KLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVA 211
            +   +HPN++ + G +++PP +V   +++  G LY  L       + ++  LR  +D+A
Sbjct: 76  IMSNLNHPNIVKLYGLMHNPPRMV--MEFVPCGDLYHRLL-DKAHPIKWSVKLRLMLDIA 132

Query: 212 RGMAFLHSLERII 224
            G+ ++ +    I
Sbjct: 133 LGIEYMQNQNPPI 145

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score =  106 bits (266), Expect = 2e-27
 Identities = 34/127 (26%), Positives = 60/127 (47%), Gaps = 5/127 (3%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFS 157
           I    L +   I  G  G  + GRW   + VA +++ +        + F  E    R   
Sbjct: 30  IPFEQLEIGELIGKGRFGQVYHGRW-HGE-VAIRLIDIERDNEDQLKAFKREVMAYRQTR 87

Query: 158 HPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
           H NV+  +G   SPP L +I+      +LY+++   A IV+D  +  + A ++ +GM +L
Sbjct: 88  HENVVLFMGACMSPPHLAIITSLCKGRTLYSVVR-DAKIVLDVNKTRQIAQEIVKGMGYL 146

Query: 218 HSLERII 224
           H+ + I+
Sbjct: 147 HA-KGIL 152

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score =  105 bits (263), Expect = 2e-27
 Identities = 37/122 (30%), Positives = 60/122 (49%), Gaps = 5/122 (4%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFS 157
           I    +++  +I SG  G  ++G+W  +  VA K+L V   TP+  + F  E   LR   
Sbjct: 21  IPDGQITVGQRIGSGSFGTVYKGKW--HGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTR 78

Query: 158 HPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
           H N+L  +G   +P  L +++Q+    SLY  LH       +  + +  A   ARGM +L
Sbjct: 79  HVNILLFMGYSTAPQ-LAIVTQWCEGSSLYHHLHAS-ETKFEMKKLIDIARQTARGMDYL 136

Query: 218 HS 219
           H+
Sbjct: 137 HA 138

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  101 bits (254), Expect = 6e-27
 Identities = 45/75 (60%), Positives = 56/75 (74%), Gaps = 4/75 (5%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           ++  DDHGFSPLHWAC+EG   +VE+L+ RGAR+N  NRGDDTPLHLAA+HGH DIV+ L
Sbjct: 32  LNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKL 91

Query: 64  AVQNNQDLTKINFKD 78
            +Q   D   IN  +
Sbjct: 92  -LQYKAD---INAVN 102

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 95.6 bits (239), Expect = 7e-25
 Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 1/80 (1%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           ++  ++HG  PLH+AC  G  ++ E L+  GA V+  N+  + P+  A A     +    
Sbjct: 98  INAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERA 157

Query: 64  AVQNNQDLTKINFKDQSWLG 83
             +  Q+L +I +KD  W G
Sbjct: 158 -EKMGQNLNRIPYKDTFWKG 176

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 78.6 bits (195), Expect = 2e-18
 Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 1/57 (1%)

Query: 8  DDHGFSPLHWACKEGHLKLVELLLQRGAR-VNATNRGDDTPLHLAAAHGHLDIVRLL 63
                 +   C+EG+   V L L      +N  +    +PLH A   G   +V +L
Sbjct: 2  SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEML 58

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 58.6 bits (143), Expect = 5e-11
 Identities = 11/54 (20%), Positives = 17/54 (31%), Gaps = 6/54 (11%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHL 57
           VS+ + +G  P+  A       L E   + G  +N        P       G  
Sbjct: 131 VSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRI------PYKDTFWKGTT 178

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score =  101 bits (253), Expect = 5e-26
 Identities = 31/124 (25%), Positives = 52/124 (41%), Gaps = 7/124 (5%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVA-KIL--AVRNCTPRVSRDFNEEFPKLRI 155
           I   +L+L   I  G  G  +R  W   D VA K           +   +  +E     +
Sbjct: 4   IDFAELTLEEIIGIGGFGKVYRAFW-IGDEVAVKAARHDPDEDISQTIENVRQEAKLFAM 62

Query: 156 FSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMA 215
             HPN++ + G     P+L ++ ++   G L  +L    G  +     + +AV +ARGM 
Sbjct: 63  LKHPNIIALRGVCLKEPNLCLVMEFARGGPLNRVLS---GKRIPPDILVNWAVQIARGMN 119

Query: 216 FLHS 219
           +LH 
Sbjct: 120 YLHD 123

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score =  100 bits (252), Expect = 1e-25
 Identities = 28/124 (22%), Positives = 59/124 (47%), Gaps = 7/124 (5%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSH 158
           I   ++ +   +  G  G   + +W+  D+  K +     +    + F  E  +L   +H
Sbjct: 5   IDYKEIEVEEVVGRGAFGVVCKAKWRAKDVAIKQIE----SESERKAFIVELRQLSRVNH 60

Query: 159 PNVLPVIGCVNSPPDLVVISQYMAWGSLYALLH-EGAGIVVDFAQALRFAVDVARGMAFL 217
           PN++ + G   +P  + ++ +Y   GSLY +LH          A A+ + +  ++G+A+L
Sbjct: 61  PNIVKLYGACLNP--VCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYL 118

Query: 218 HSLE 221
           HS++
Sbjct: 119 HSMQ 122

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 90.9 bits (227), Expect = 2e-23
 Identities = 35/60 (58%), Positives = 44/60 (73%)

Query: 4  VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           +V D  G++PLH AC  GHLK+VELLLQ  A VN T   +D+PLH AA +GH+DIV+LL
Sbjct: 36 PNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLL 95

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 89.4 bits (223), Expect = 8e-23
 Identities = 25/57 (43%), Positives = 32/57 (56%)

Query: 7  TDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
          T+  G + LH A  +G +  VE LLQ G+  N  +    TPLH A  HGHL +V LL
Sbjct: 6  TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELL 62

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 84.0 bits (209), Expect = 8e-21
 Identities = 21/60 (35%), Positives = 28/60 (46%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           V+ T     SPLH A K GH+ +V+LLL  GA  NA N     P+          ++ L 
Sbjct: 69  VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLP 128

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 46.3 bits (111), Expect = 7e-07
 Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 1/30 (3%)

Query: 34 GARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
          G      +RG+ T LH+A+  G +  V  L
Sbjct: 1  GIDPFTNHRGE-TLLHIASIKGDIPSVEYL 29

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 45.1 bits (108), Expect = 2e-06
 Identities = 6/37 (16%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNAT 40
            +  +  G  P+ +   E    L+ L  +  +  +A+
Sbjct: 102 RNAVNIFGLRPVDYTDDESMKSLLLLPEKNES-SSAS 137

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 90.6 bits (226), Expect = 6e-23
 Identities = 23/60 (38%), Positives = 35/60 (58%)

Query: 4  VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
          V+  D+ GF+PL WA   G ++ V  LL+ GA  +   +  ++ L LA+  G+ DIV LL
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLL 88

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 89.8 bits (224), Expect = 1e-22
 Identities = 20/60 (33%), Positives = 35/60 (58%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           +++ D +G +PL +A +  H+K VE LL RGA +        TP+ LA A G+  + +++
Sbjct: 95  INIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVI 154

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 86.3 bits (215), Expect = 2e-21
 Identities = 17/60 (28%), Positives = 24/60 (40%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
             +      S L  A   G+  +V LLL+R   +N  +    TPL  A    H+  V  L
Sbjct: 62  PHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEAL 121

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 79.0 bits (196), Expect = 1e-18
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 11 GFSPLHWACKEGHLKLVELLLQRGA-RVNATNRGDDTPLHLAAAHGHLDIVRLL 63
              +H    +G L  ++  L++G   VN  +    TPL  A+A G ++ VR L
Sbjct: 2  DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFL 55

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 59.7 bits (146), Expect = 2e-11
 Identities = 8/44 (18%), Positives = 21/44 (47%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTP 47
           ++   D G++P+  A   G+ K+ +++     ++  +N     P
Sbjct: 128 LTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 43.9 bits (105), Expect = 7e-06
 Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 3/37 (8%)

Query: 43 GDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQ 79
          GD   +H  AA G LD ++   ++   +   +N  D+
Sbjct: 1  GDSLSIHQLAAQGELDQLKEH-LRKGDN--LVNKPDE 34

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score = 93.2 bits (232), Expect = 8e-23
 Identities = 36/122 (29%), Positives = 53/122 (43%), Gaps = 12/122 (9%)

Query: 103 DLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNE-EFPKLRIFSHPNV 161
           D++L   +  G  G+ WRG WQ  ++  KI + R+        F E E     +  H N+
Sbjct: 9   DITLLECVGKGRYGEVWRGSWQGENVAVKIFSSRD----EKSWFRETELYNTVMLRHENI 64

Query: 162 LPVIGCV----NSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
           L  I       +S   L +I+ Y   GSLY  L       +D    LR  + +A G+A L
Sbjct: 65  LGFIASDMTSRHSSTQLWLITHYHEMGSLYDYLQLT---TLDTVSCLRIVLSIASGLAHL 121

Query: 218 HS 219
           H 
Sbjct: 122 HI 123

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 89.8 bits (224), Expect = 1e-22
 Identities = 25/60 (41%), Positives = 38/60 (63%)

Query: 4  VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
          ++ TD+ GF+PL WA   G + +VE LLQ GA      +G ++ L LA + G+ DIV++L
Sbjct: 29 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 88

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 87.8 bits (219), Expect = 5e-22
 Identities = 17/60 (28%), Positives = 31/60 (51%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           V+  D +G +PL +A    H+K V++LL+ GA            + LA A G+  + +++
Sbjct: 95  VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVI 154

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 86.7 bits (216), Expect = 2e-21
 Identities = 18/60 (30%), Positives = 28/60 (46%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
             +      S L  AC +G+  +V++LL  G  VN  +    TPL  A    H+  V++L
Sbjct: 62  PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKML 121

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 83.6 bits (208), Expect = 3e-20
 Identities = 14/54 (25%), Positives = 25/54 (46%)

Query: 10 HGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
               +H    +G +  +   +++   +N T+    TPL  AAAHG + +V  L
Sbjct: 2  ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFL 55

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 53.5 bits (130), Expect = 3e-09
 Identities = 4/39 (10%), Positives = 17/39 (43%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNR 42
            ++  D G++ +  A   G+  + +++     ++    +
Sbjct: 128 PTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIK 166

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 86.6 bits (216), Expect = 2e-22
 Identities = 32/60 (53%), Positives = 46/60 (76%)

Query: 4  VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
          V+  D +G +PLH A + GHL++V+LLL+ GA VNA ++   TPLHLAA +GHL++V+LL
Sbjct: 28 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 87

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 83.6 bits (208), Expect = 3e-21
 Identities = 30/54 (55%), Positives = 43/54 (79%)

Query: 10 HGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
          +G +PLH A + GHL++V+LLL+ GA VNA ++   TPLHLAA +GHL++V+LL
Sbjct: 1  NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 54

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 46.2 bits (111), Expect = 3e-07
 Identities = 16/32 (50%), Positives = 24/32 (75%)

Query: 4  VSVTDDHGFSPLHWACKEGHLKLVELLLQRGA 35
          V+  D +G +PLH A + GHL++V+LLL+ GA
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 87.1 bits (217), Expect = 3e-22
 Identities = 25/60 (41%), Positives = 37/60 (61%)

Query: 4  VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
          V+ T + G  PLH+A   G L+++E LL +GA +NA ++   TPL  A   GH+  V+LL
Sbjct: 33 VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLL 92

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 83.2 bits (207), Expect = 1e-20
 Identities = 20/54 (37%), Positives = 25/54 (46%)

Query: 10 HGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
                 WA K G L  V+  + +G  VN T  G   PLH AA  G L+I+  L
Sbjct: 6  MCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFL 59

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 79.4 bits (197), Expect = 3e-19
 Identities = 15/58 (25%), Positives = 24/58 (41%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVR 61
           ++  D H  +PL  A  EGH+  V+LLL +GA          T            +++
Sbjct: 66  INAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score = 92.1 bits (229), Expect = 4e-22
 Identities = 32/126 (25%), Positives = 51/126 (40%), Gaps = 12/126 (9%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNE-EFPKLRIFS 157
                + L   I  G  G+ WRG+W+  ++  KI + R         F E E  +  +  
Sbjct: 39  TIARTIVLQESIGKGRFGEVWRGKWRGEEVAVKIFSSRE----ERSWFREAEIYQTVMLR 94

Query: 158 HPNVLPVIGCV----NSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARG 213
           H N+L  I        +   L ++S Y   GSL+  L+      V     ++ A+  A G
Sbjct: 95  HENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNRY---TVTVEGMIKLALSTASG 151

Query: 214 MAFLHS 219
           +A LH 
Sbjct: 152 LAHLHM 157

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score = 91.7 bits (228), Expect = 5e-22
 Identities = 28/126 (22%), Positives = 46/126 (36%), Gaps = 12/126 (9%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNE-EFPKLRIFS 157
                + +  +I  G  G+ W G+W+   +  K+          +  F E E  +  +  
Sbjct: 34  TIAKQIQMVKQIGKGRYGEVWMGKWRGEKVAVKVFFTTE----EASWFRETEIYQTVLMR 89

Query: 158 HPNVLPVIGCVNSP----PDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARG 213
           H N+L  I            L +I+ Y   GSLY  L       +D    L+ A     G
Sbjct: 90  HENILGFIAADIKGTGSWTQLYLITDYHENGSLYDYLKST---TLDAKSMLKLAYSSVSG 146

Query: 214 MAFLHS 219
           +  LH+
Sbjct: 147 LCHLHT 152

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 86.8 bits (216), Expect = 1e-21
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 4   VSVTDDHGF-SPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRL 62
            +  D      P+H A +EG L  + +L + GAR++  +     P+ LA   GH D+ R 
Sbjct: 70  PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARY 129

Query: 63  L 63
           L
Sbjct: 130 L 130

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 82.5 bits (205), Expect = 4e-20
 Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 6  VTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           + +     L  A   G ++ V  LL+ GA  NA N     P+ +    G   +  LL
Sbjct: 7  SSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQV-MMMGSARVAELL 63

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 80.6 bits (200), Expect = 3e-19
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 4  VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNR-GDDTPLHLAAAHGHLDIVRL 62
           +  + +G  P+      G  ++ ELLL  GA  N  +      P+H AA  G LD + +
Sbjct: 38 PNAPNSYGRRPIQVMMM-GSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVV 96

Query: 63 L 63
          L
Sbjct: 97 L 97

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 74.8 bits (185), Expect = 4e-17
 Identities = 13/57 (22%), Positives = 19/57 (33%), Gaps = 5/57 (8%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIV 60
           + V D  G  P+  A + GH  +   L         +         + AA G  DI 
Sbjct: 104 LDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGS-----NHARIDAAEGPSDIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 45.5 bits (109), Expect = 2e-06
 Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 2/33 (6%)

Query: 31 LQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
          ++  A   ++       L  AAA G ++ VR L
Sbjct: 1  MEPAA--GSSMEPSADWLATAAARGRVEEVRAL 31

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 85.1 bits (212), Expect = 1e-21
 Identities = 29/60 (48%), Positives = 41/60 (68%)

Query: 4  VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
          V+     G +PLH A K GH ++V+LLL +GA VNA ++  +TP HLA  +GH +IV+LL
Sbjct: 35 VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLL 94

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 83.2 bits (207), Expect = 1e-20
 Identities = 29/56 (51%), Positives = 39/56 (69%)

Query: 8  DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
             G +PLH A K GH + V+ LL +GA VNA ++  +TPLHLAA +GH +IV+LL
Sbjct: 6  SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLL 61

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 59.7 bits (146), Expect = 6e-12
 Identities = 18/46 (39%), Positives = 25/46 (54%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLH 49
           V+     G +P H A K GH ++V+LL  +GA VNA + G     H
Sbjct: 68  VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH 113

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 85.5 bits (213), Expect = 2e-21
 Identities = 32/60 (53%), Positives = 46/60 (76%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           V+  D +G +PLH A + GHL++V+LLL+ GA VNA ++   TPLHLAA +GHL++V+LL
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 84.7 bits (211), Expect = 3e-21
 Identities = 32/60 (53%), Positives = 46/60 (76%)

Query: 4  VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
          V+  D +G +PLH A + GHL++V+LLL+ GA VNA ++   TPLHLAA +GHL++V+LL
Sbjct: 28 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 87

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 83.2 bits (207), Expect = 1e-20
 Identities = 30/54 (55%), Positives = 43/54 (79%)

Query: 10 HGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
          +G +PLH A + GHL++V+LLL+ GA VNA ++   TPLHLAA +GHL++V+LL
Sbjct: 1  NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 54

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 45.8 bits (110), Expect = 9e-07
 Identities = 15/28 (53%), Positives = 22/28 (78%)

Query: 8   DDHGFSPLHWACKEGHLKLVELLLQRGA 35
           D +G +PLH A + GHL++V+LLL+ GA
Sbjct: 98  DKNGRTPLHLAARNGHLEVVKLLLEAGA 125

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 85.6 bits (213), Expect = 2e-21
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 4   VSVTDDHGF-SPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRL 62
            +  D      P+H A +EG L  + +L + GAR++  +     P+ LA   GH DI R 
Sbjct: 70  PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARY 129

Query: 63  L 63
           L
Sbjct: 130 L 130

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 83.3 bits (207), Expect = 1e-20
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 4  VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
          + +      + L  A   G ++ V  LL+ GA  NA NR    P+ +    G   +  LL
Sbjct: 5  IHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQV-MMMGSAQVAELL 63

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 79.8 bits (198), Expect = 3e-19
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 4  VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNA-TNRGDDTPLHLAAAHGHLDIVRL 62
           +  +  G  P+      G  ++ ELLL  GA  N         P+H AA  G LD + +
Sbjct: 38 PNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVV 96

Query: 63 L 63
          L
Sbjct: 97 L 97

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 49.7 bits (120), Expect = 4e-08
 Identities = 9/30 (30%), Positives = 13/30 (43%)

Query: 34 GARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
             ++      D  L  AAA G ++ VR L
Sbjct: 2  SPGIHMLGGSSDAGLATAAARGQVETVRQL 31

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 48.6 bits (117), Expect = 9e-08
 Identities = 8/32 (25%), Positives = 13/32 (40%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGA 35
           + V D  G  P+  A ++GH  +   L     
Sbjct: 104 LDVCDAWGRLPVDLAEEQGHRDIARYLHAATG 135

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 90.6 bits (226), Expect = 3e-21
 Identities = 32/76 (42%), Positives = 41/76 (53%), Gaps = 4/76 (5%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           V  T   G++PLH A   G++KLV+ LLQ  A VNA  +   +PLH AA  GH DIV LL
Sbjct: 304 VDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLL 363

Query: 64  AVQNNQDLTKINFKDQ 79
            ++N       N    
Sbjct: 364 -LKNGAS---PNEVSS 375

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 88.7 bits (221), Expect = 1e-20
 Identities = 24/60 (40%), Positives = 34/60 (56%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
                 +G++PLH A K+  +++   LLQ G   NA +    TPLHLAA  GH ++V LL
Sbjct: 205 PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALL 264

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 88.7 bits (221), Expect = 1e-20
 Identities = 28/60 (46%), Positives = 38/60 (63%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
            +     GF+PLH A K G +++ ELLL+R A  NA  +   TPLH+A  H +LDIV+LL
Sbjct: 139 QACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLL 198

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 87.9 bits (219), Expect = 2e-20
 Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 4/78 (5%)

Query: 4  VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
               + G +PLH A   GHL +V+ LLQRGA  N +N   +TPLH+AA  GH ++ + L
Sbjct: 7  GGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYL 66

Query: 64 AVQNNQDLTKINFKDQSW 81
           +QN      +N K +  
Sbjct: 67 -LQNKAK---VNAKAKDD 80

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 86.8 bits (216), Expect = 5e-20
 Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 1/75 (1%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           V+     G+SPLH A ++GH  +V LLL+ GA  N  +    TPL +A   G++ +  +L
Sbjct: 337 VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVL 396

Query: 64  AVQNNQDLTKINFKD 78
            V  ++  + +   D
Sbjct: 397 KVVTDET-SFVLVSD 410

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 86.4 bits (215), Expect = 7e-20
 Identities = 21/60 (35%), Positives = 34/60 (56%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
            ++    G +PLH A +EGH++ V  LL++ A      +   TPLH+AA +G + +  LL
Sbjct: 106 PNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELL 165

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 86.4 bits (215), Expect = 7e-20
 Identities = 24/60 (40%), Positives = 34/60 (56%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
            +     G +PLH A +EGH ++V LLL + A  N  N+   TPLHL A  GH+ +  +L
Sbjct: 238 ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVL 297

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 86.4 bits (215), Expect = 7e-20
 Identities = 20/60 (33%), Positives = 32/60 (53%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
            +    +G +PLH A    +L +V+LLL RG   ++      TPLH+AA    +++ R L
Sbjct: 172 PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSL 231

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 86.0 bits (214), Expect = 1e-19
 Identities = 26/60 (43%), Positives = 39/60 (65%)

Query: 4  VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           +V++    +PLH A + GH ++ + LLQ  A+VNA  + D TPLH AA  GH ++V+LL
Sbjct: 40 PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLL 99

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 85.6 bits (213), Expect = 1e-19
 Identities = 23/60 (38%), Positives = 32/60 (53%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           V+       +PLH A + GH  +V+LLL+  A  N       TPLH+AA  GH++ V  L
Sbjct: 73  VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLAL 132

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 85.2 bits (212), Expect = 2e-19
 Identities = 25/75 (33%), Positives = 47/75 (62%), Gaps = 4/75 (5%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
            ++ +  G +PLH   +EGH+ + ++L++ G  V+AT R   TPLH+A+ +G++ +V+ L
Sbjct: 271 GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFL 330

Query: 64  AVQNNQDLTKINFKD 78
            +Q+  D   +N K 
Sbjct: 331 -LQHQAD---VNAKT 341

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 50.2 bits (121), Expect = 2e-07
 Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 4/50 (8%)

Query: 33 RGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWL 82
           G           TPLH+A+  GHL IV+ L +Q        N  +    
Sbjct: 3  PGISGGGGGESGLTPLHVASFMGHLPIVKNL-LQRGAS---PNVSNVKVE 48

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 47.9 bits (115), Expect = 9e-07
 Identities = 9/59 (15%), Positives = 23/59 (38%), Gaps = 5/59 (8%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELL---LQRGARVNATNRGDDTPLHLAAAHGHLDI 59
            +     G +PL  A + G++ + ++L       + V  +++   +          LD+
Sbjct: 370 PNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPE--TVDEILDV 426

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 87.3 bits (217), Expect = 3e-21
 Identities = 27/61 (44%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLL-QRGARVNATNRGDDTPLHLAAAHGHLDIVRL 62
           V+  D  G + L+WAC  GH  +VE+L  Q    +N  N+  DT LH AA  G+ DIV+L
Sbjct: 99  VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQL 158

Query: 63  L 63
           L
Sbjct: 159 L 159

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 86.9 bits (216), Expect = 4e-21
 Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 3/76 (3%)

Query: 3   YVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRL 62
           YV+   +   +PLH A K G+L  +   L     VN  ++   T L+ A   GH DIV +
Sbjct: 65  YVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEM 124

Query: 63  LAVQNNQDLTKINFKD 78
           L  Q N +   +N ++
Sbjct: 125 LFTQPNIE---LNQQN 137

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 84.6 bits (210), Expect = 3e-20
 Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           ++  +  G + LH A  +G+  +V+LLL +GAR +  N        +A       +++  
Sbjct: 133 LNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKK 192

Query: 64  ----AVQNNQD 70
               AV+   +
Sbjct: 193 QGTDAVRTLSN 203

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 71.1 bits (175), Expect = 3e-15
 Identities = 6/55 (10%), Positives = 12/55 (21%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLD 58
             + +         A       L++      A    +N  D      +    H  
Sbjct: 166 TDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHHHH 220

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 65.3 bits (160), Expect = 4e-13
 Identities = 13/60 (21%), Positives = 19/60 (31%), Gaps = 5/60 (8%)

Query: 4  VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
          +    D   +       +G   L+         V       D PLH AA  G+L  +R  
Sbjct: 38 IIYITDMSDTNWWKGTSKGRTGLIP-----SNYVAEQAESIDNPLHEAAKRGNLSWLREC 92

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 63.4 bits (155), Expect = 2e-12
 Identities = 7/62 (11%), Positives = 14/62 (22%)

Query: 7  TDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQ 66
              G   +  A      +  + L      +       DT      + G   ++    V 
Sbjct: 8  PVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVA 67

Query: 67 NN 68
            
Sbjct: 68 EQ 69

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 87.5 bits (218), Expect = 3e-21
 Identities = 14/61 (22%), Positives = 30/61 (49%)

Query: 3  YVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRL 62
          +++  DD+    +  A + G  +    L++ G  V   ++ + T LH AA +  +D+V+ 
Sbjct: 1  HMTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKY 60

Query: 63 L 63
           
Sbjct: 61 Y 61

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 83.6 bits (208), Expect = 9e-20
 Identities = 18/57 (31%), Positives = 30/57 (52%)

Query: 7   TDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
              H  + LHWA   G+  ++ LLL+ GA V+A N   ++ L LA    ++ ++  L
Sbjct: 173 DKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHL 229

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 83.3 bits (207), Expect = 1e-19
 Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 4/71 (5%)

Query: 8   DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQN 67
            D   +PLHWA ++GHL +V  L++ GA  +  +    + +HLAA  GH  IV  L +  
Sbjct: 73  GDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYL-IAK 131

Query: 68  NQDLTKINFKD 78
            QD   ++  D
Sbjct: 132 GQD---VDMMD 139

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 82.1 bits (204), Expect = 4e-19
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGH-LDIVRL 62
            S+ D  G S +H A + GH  +V  L+ +G  V+  ++   TPL  AA   H +D  RL
Sbjct: 102 PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRL 161

Query: 63  L 63
           L
Sbjct: 162 L 162

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 80.9 bits (201), Expect = 1e-18
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 4  VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNAT-NRGDDTPLHLAAAHGHLDIVRL 62
          V   D    + LHWA     + LV+  + +GA V+      + TPLH A   GHL +V  
Sbjct: 35 VRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQ 94

Query: 63 L 63
          L
Sbjct: 95 L 95

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 76.3 bits (189), Expect = 4e-17
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)

Query: 4   VSVTDDHGFSPLHWACKEGH-LKLVELLLQRGARVNATNRGD-DTPLHLAAAHGHLDIVR 61
           V + D +G +PL WA    H +    LLL     VN  ++   +T LH A   G+  ++ 
Sbjct: 135 VDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVIS 194

Query: 62  LL 63
           LL
Sbjct: 195 LL 196

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 45.9 bits (110), Expect = 3e-06
 Identities = 6/34 (17%), Positives = 13/34 (38%)

Query: 8   DDHGFSPLHWACKEGHLKLVELLLQRGARVNATN 41
           +  G S L  A +  ++ ++  L +        N
Sbjct: 207 NIKGESALDLAKQRKNVWMINHLQEARQAKGYDN 240

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 89.2 bits (222), Expect = 5e-21
 Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 4/71 (5%)

Query: 4  VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
             +DD     +H A ++G    V  L++ G      NR   T LHLA   G +D  + L
Sbjct: 13 RIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYL 72

Query: 64 ----AVQNNQD 70
               V +   
Sbjct: 73 ASVGEVHSLWH 83

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 85.7 bits (213), Expect = 1e-19
 Identities = 16/76 (21%), Positives = 27/76 (35%), Gaps = 4/76 (5%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           +   +  G S LHWA       +    ++ G  VN  +     PL+L+     + + + L
Sbjct: 204 LDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKEL 263

Query: 64  ----AVQNNQDLTKIN 75
                V   Q     N
Sbjct: 264 LQKTDVFLIQACPYHN 279

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 80.3 bits (199), Expect = 7e-18
 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 2/62 (3%)

Query: 4   VSVTDDHGFSPLHWACKEG--HLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVR 61
             V    G + LHW    G  +L+++++L+Q GA   A ++ D+TPL  A    + + + 
Sbjct: 131 SHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALD 190

Query: 62  LL 63
           L+
Sbjct: 191 LM 192

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 79.9 bits (198), Expect = 1e-17
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
            ++ +  G + LH ACK G +   + L   G   +  +     P+HLA      D+V  L
Sbjct: 46  PTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWH--GQKPIHLAVMANKTDLVVAL 103

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 78.0 bits (193), Expect = 5e-17
 Identities = 5/56 (8%), Positives = 15/56 (26%)

Query: 8   DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
                  +  A      ++++LL ++   V  +                  + R+ 
Sbjct: 287 RVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMK 342

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 77.2 bits (191), Expect = 1e-16
 Identities = 11/65 (16%), Positives = 26/65 (40%), Gaps = 5/65 (7%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQR-----GARVNATNRGDDTPLHLAAAHGHLD 58
            +  D    +PL  A +  + + ++L++         R++  N+  ++ LH A      D
Sbjct: 166 PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWED 225

Query: 59  IVRLL 63
           +    
Sbjct: 226 VAMRF 230

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 72.6 bits (179), Expect = 4e-15
 Identities = 12/73 (16%), Positives = 26/73 (35%), Gaps = 13/73 (17%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDD-------------TPLHL 50
           V++ D+    PL+ + +   + L + LLQ+                           +  
Sbjct: 237 VNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPA 296

Query: 51  AAAHGHLDIVRLL 63
           AA     ++++LL
Sbjct: 297 AADPSKQEVLQLL 309

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 69.1 bits (170), Expect = 6e-14
 Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 7/68 (10%)

Query: 6   VTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLA- 64
            +  HG  P+H A       LV  L++              P  L       ++  + + 
Sbjct: 79  HSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQ------MPESLLNECDEREVNEIGSH 132

Query: 65  VQNNQDLT 72
           V++ +  T
Sbjct: 133 VKHCKGQT 140

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 62.6 bits (153), Expect = 9e-12
 Identities = 7/48 (14%), Positives = 15/48 (31%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLA 51
           V  + + G        K+    +  + L   A V   +R       ++
Sbjct: 316 VVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 58.3 bits (142), Expect = 3e-10
 Identities = 10/62 (16%), Positives = 23/62 (37%), Gaps = 8/62 (12%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHG--HLDIVR 61
           V    + G  P     +    ++ E+        +  +    T LH     G  +L++++
Sbjct: 104 VEGAKERGQMPESLLNECDEREVNEIG------SHVKHCKGQTALHWCVGLGPEYLEMIK 157

Query: 62  LL 63
           +L
Sbjct: 158 IL 159

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 42.9 bits (102), Expect = 4e-05
 Identities = 8/35 (22%), Positives = 14/35 (40%)

Query: 29 LLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
          +          ++  +   +H+AA  G  D VR L
Sbjct: 5  MTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRL 39

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 84.0 bits (209), Expect = 1e-20
 Identities = 22/60 (36%), Positives = 33/60 (55%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
            +V D  G SP+H A + G L  +++L++ GA VN  +     P+HLA   GH  +V  L
Sbjct: 61  PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL 120

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 80.5 bits (200), Expect = 3e-19
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           V+V D  G  P+H A +EGH  +V  L    + ++  +    TPL LA   G  D+V +L
Sbjct: 94  VNVPDGTGALPIHLAVQEGHTAVVSFLAA-ESDLHRRDARGLTPLELALQRGAQDLVDIL 152

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 79.8 bits (198), Expect = 4e-19
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 4  VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
              +  G + L      G   +   LL++GA  N  +    +P+H AA  G LD +++L
Sbjct: 29 PDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVL 87

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 71.7 bits (177), Expect = 6e-16
 Identities = 14/54 (25%), Positives = 18/54 (33%), Gaps = 2/54 (3%)

Query: 11 GFSPLHWACKEGHLKLV-ELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
              L  A   G ++ V  LL +     +A NR   T L      G   I   L
Sbjct: 2  AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQ-VMMFGSTAIALEL 54

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 39.3 bits (93), Expect = 2e-04
 Identities = 9/28 (32%), Positives = 14/28 (50%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLL 31
           +   D  G +PL  A + G   LV++L 
Sbjct: 126 LHRRDARGLTPLELALQRGAQDLVDILQ 153

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 84.0 bits (209), Expect = 2e-20
 Identities = 31/60 (51%), Positives = 41/60 (68%)

Query: 4  VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
          V+  D  G++PLH A   GHL++VE+LL+ GA VNA +    TPL LAA  GHL+IV +L
Sbjct: 40 VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVL 99

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 83.2 bits (207), Expect = 4e-20
 Identities = 23/60 (38%), Positives = 37/60 (61%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           V+  D  G +PLH A   GHL++VE+LL+ GA VNA ++   T   ++  +G+ D+  +L
Sbjct: 106 VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 81.6 bits (203), Expect = 1e-19
 Identities = 31/60 (51%), Positives = 40/60 (66%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           V+  D  G +PL  A   GHL++VE+LL+ GA VNA +    TPLHLAA  GHL+IV +L
Sbjct: 73  VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVL 132

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 75.5 bits (187), Expect = 2e-17
 Identities = 23/53 (43%), Positives = 30/53 (56%)

Query: 11 GFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
              L  A + G    V +L+  GA VNA +    TPLHLAA +GHL+IV +L
Sbjct: 14 LGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVL 66

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 38.1 bits (90), Expect = 6e-04
 Identities = 7/29 (24%), Positives = 13/29 (44%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQ 32
           V+  D  G +    +   G+  L E+L +
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 84.4 bits (210), Expect = 2e-20
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 3/75 (4%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           V   D  G +PL+ A     +++ + L+ RGA +N  N   D+P   A A G  +I+  +
Sbjct: 32  VDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYM 91

Query: 64  AVQNNQDLTKINFKD 78
                 D   +N  +
Sbjct: 92  LKHATPD---LNKHN 103

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 80.6 bits (200), Expect = 7e-19
 Identities = 12/58 (20%), Positives = 27/58 (46%)

Query: 6  VTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
          +      + L  A +    K+ E+L     +V+  +   +TPL++A  +  ++I + L
Sbjct: 1  MKTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKAL 58

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 79.8 bits (198), Expect = 1e-18
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 8   DDHGFSPLHWACKEGHLKLVELLLQRGAR-VNATNRGDDTPLHLAAAHGHLDIVRLL 63
           +    SP  +A  +G  +++  +L+     +N  NR     L  AA  GH+D V+LL
Sbjct: 69  NSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLL 125

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 72.9 bits (180), Expect = 5e-16
 Identities = 14/65 (21%), Positives = 31/65 (47%), Gaps = 5/65 (7%)

Query: 4   VSVTDDHGFSPLHWAC-----KEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLD 58
           +   +D G++ L  A       + +  +V+LL++ GA  +  +    T +  A   G+ +
Sbjct: 133 IDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTE 192

Query: 59  IVRLL 63
           I ++L
Sbjct: 193 ISKIL 197

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 71.7 bits (177), Expect = 2e-15
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 6/66 (9%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRG-ARVNATNRGDDTPLHLAAA-----HGHL 57
           ++  + +G + L  A ++GH+  V+LLL+ G   ++  N    T L  A         + 
Sbjct: 99  LNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQ 158

Query: 58  DIVRLL 63
           DIV+LL
Sbjct: 159 DIVKLL 164

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 40.5 bits (96), Expect = 2e-04
 Identities = 7/29 (24%), Positives = 19/29 (65%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQ 32
            S+ D+ G + + +A ++G+ ++ ++L Q
Sbjct: 171 QSIKDNSGRTAMDYANQKGYTEISKILAQ 199

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 83.2 bits (207), Expect = 2e-20
 Identities = 27/57 (47%), Positives = 36/57 (63%)

Query: 7  TDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
          TD  G SPLH A + GH    E+LL+ G   +A  + D TPLH+AA+ GH +IV +L
Sbjct: 30 TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVL 86

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 81.7 bits (203), Expect = 9e-20
 Identities = 18/60 (30%), Positives = 34/60 (56%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           V+  D    + LHWA +  H ++VELL++ GA V+  ++   T   ++  +G+ D+  +L
Sbjct: 93  VNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 79.4 bits (197), Expect = 6e-19
 Identities = 25/56 (44%), Positives = 32/56 (57%)

Query: 8   DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
                +PLH A  EGH  +VE+LL+ GA VNA +    T LH A  H H ++V LL
Sbjct: 64  TKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELL 119

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 72.0 bits (178), Expect = 3e-16
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 11 GFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
              L  A + G    V +L+  GA       G  +PLHLAA +GH     +L
Sbjct: 2  LGKKLLEAARAGQDDEVRILMANGAPFTTDWLG-TSPLHLAAQYGHFSTTEVL 53

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 85.2 bits (212), Expect = 3e-20
 Identities = 20/60 (33%), Positives = 33/60 (55%)

Query: 4  VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
            +   +  SPLH A + GH+ +  +L+Q GA ++  +    TPL  AA + HL+ V+ L
Sbjct: 4  FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYL 63

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 84.0 bits (209), Expect = 6e-20
 Identities = 23/60 (38%), Positives = 38/60 (63%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           V+  DD G++P+ WA +  H+ LV+LLL +G+ +N  +  ++  LH AA  G +DI  +L
Sbjct: 104 VNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEIL 163

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 83.6 bits (208), Expect = 9e-20
 Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 3/75 (4%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           +    +   +PL  A +  HL+ V+ L++ GA V+  +    T LHLAA  GH ++V+ L
Sbjct: 37  IDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYL 96

Query: 64  AVQNNQDLTKINFKD 78
                 D   +N +D
Sbjct: 97  LSNGQMD---VNCQD 108

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 83.6 bits (208), Expect = 1e-19
 Identities = 20/60 (33%), Positives = 31/60 (51%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           +++ D+     LHWA   G + + E+LL     ++A N   D+PLH+AA     D V L 
Sbjct: 137 INIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLF 196

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 82.8 bits (206), Expect = 2e-19
 Identities = 18/60 (30%), Positives = 28/60 (46%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           +   + HG SPLH A +E     V L L R + V   N+  +TPL  A+ +  +     +
Sbjct: 170 LHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQM 229

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 78.2 bits (194), Expect = 1e-17
 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 1/57 (1%)

Query: 8   DDHGFSPLHWACKEGHLKLVELLLQRGAR-VNATNRGDDTPLHLAAAHGHLDIVRLL 63
           D  G + LH A K+GH ++V+ LL  G   VN  + G  TP+  A  + H+D+V+LL
Sbjct: 74  DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLL 130

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 40.9 bits (97), Expect = 1e-04
 Identities = 5/32 (15%), Positives = 12/32 (37%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGA 35
           V++ +  G +PL  A     +     + +   
Sbjct: 203 VTLKNKEGETPLQCASLNSQVWSALQMSKALQ 234

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 85.6 bits (213), Expect = 4e-20
 Identities = 26/60 (43%), Positives = 32/60 (53%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           V++      SPLH AC  GHL  V++LL+ GA+VN       TPL  A   G  D V LL
Sbjct: 85  VNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLL 144

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 85.6 bits (213), Expect = 4e-20
 Identities = 16/57 (28%), Positives = 27/57 (47%)

Query: 7   TDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
            +    SP+H A + GH++ V  L+  G  ++       TPL+LA  +     V+ L
Sbjct: 153 PESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKL 209

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 85.2 bits (212), Expect = 5e-20
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           V+       +PL  AC  G    V LLLQ GA V   +    +P+H AA  GH++ V  L
Sbjct: 118 VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDL-ASPIHEAARRGHVECVNSL 176

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 83.7 bits (208), Expect = 2e-19
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           +     H  +PL+ AC+      V+ LL+ GA VN      D+PLH        ++  LL
Sbjct: 183 IDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQ-DSPLHAVVRTASEELACLL 241

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 83.3 bits (207), Expect = 3e-19
 Identities = 19/58 (32%), Positives = 27/58 (46%)

Query: 6   VTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
                 +SP+H A   GH   +  L+ +G  VN       +PLH A   GHL  V++L
Sbjct: 54  GDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKIL 111

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 79.8 bits (198), Expect = 5e-18
 Identities = 15/56 (26%), Positives = 20/56 (35%)

Query: 8   DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
                SPLH   +    +L  LL+  GA   A N     P+ L      L  + L 
Sbjct: 219 GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQLFLE 274

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 59.0 bits (144), Expect = 1e-10
 Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 7/57 (12%)

Query: 7  TDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
              G  P       G       LL      +A +  D +P+H AA HGH   +R L
Sbjct: 29 GGMDGSKPAGPRDFPGIR-----LLSNPLMGDAVS--DWSPMHEAAIHGHQLSLRNL 78

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 54.0 bits (131), Expect = 6e-09
 Identities = 8/60 (13%), Positives = 15/60 (25%), Gaps = 5/60 (8%)

Query: 18 ACKEGHLKLVELLLQRGARVNATNRGDD-----TPLHLAAAHGHLDIVRLLAVQNNQDLT 72
               H      L+ RG+ + + +          P       G   +   L      D +
Sbjct: 2  GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWS 61

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 44.8 bits (107), Expect = 7e-06
 Identities = 7/37 (18%), Positives = 11/37 (29%), Gaps = 1/37 (2%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNAT 40
               +  G  P+     E  L     L + GA +   
Sbjct: 248 TQAKNAEGKRPVELVPPESPLA-QLFLEREGASLPKP 283

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 84.6 bits (210), Expect = 4e-20
 Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 1/75 (1%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
            S+ +D G + LH A   GH ++V+ L+Q G  VNA +    TPLH AA+  ++ + + L
Sbjct: 63  PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFL 122

Query: 64  AVQNNQDLTKINFKD 78
            V++   +  + + D
Sbjct: 123 -VESGAAVFAMTYSD 136

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 81.9 bits (203), Expect = 4e-19
 Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 1/56 (1%)

Query: 8  DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
          +  G   L    +    K     +  G RV          L  ++  G  D+V+ +
Sbjct: 2  EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNPLP-LALLLDSSLEGEFDLVQRI 56

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 81.9 bits (203), Expect = 4e-19
 Identities = 15/56 (26%), Positives = 24/56 (42%)

Query: 8  DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
          +    + L  +  EG   LV+ ++      +  N    T LH A   GH +IV+ L
Sbjct: 34 NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFL 89

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 63.4 bits (155), Expect = 3e-12
 Identities = 10/68 (14%), Positives = 23/68 (33%), Gaps = 4/68 (5%)

Query: 8   DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQN 67
           D    +      +EG+ +  + L     ++   N+G    L         +    L ++ 
Sbjct: 136 DMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDE----LPMKE 191

Query: 68  NQDLTKIN 75
              +T I+
Sbjct: 192 GDCMTIIH 199

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 85.7 bits (213), Expect = 4e-20
 Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNR-GDDTPLHLAAAHGHLDIVRL 62
            S  DD G + L++A   G+++ V+L +++  R+    + G  T  + A     + IV  
Sbjct: 88  DSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSY 147

Query: 63  L 63
            
Sbjct: 148 F 148

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 84.9 bits (211), Expect = 7e-20
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 4  VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
              D HG S  ++A  + +++LV  LL  GA  N     ++ PLH AA      IV++L
Sbjct: 24 TFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKIL 81

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 83.0 bits (206), Expect = 4e-19
 Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 6/77 (7%)

Query: 10  HGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQ 69
               PLH A      K+V++LL  G   +  +   +T L+ A   G++  V+L  V+ N 
Sbjct: 61  ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLF-VKKNW 119

Query: 70  DLTKINFKDQSWLGLKT 86
               + F  ++  G KT
Sbjct: 120 R---LMFYGKT--GWKT 131

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 77.2 bits (191), Expect = 5e-17
 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 8   DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTP-LHLAAAHGHLDIVRLL 63
                S +H   K GH+ ++ LLL      N  N     P + LA  +  +++++ L
Sbjct: 158 LAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQAL 214

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 76.4 bits (189), Expect = 1e-16
 Identities = 10/61 (16%), Positives = 22/61 (36%), Gaps = 2/61 (3%)

Query: 4   VSVTDDHGFS-PLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRL 62
           +      G+    + A     + +V   L              + +H+   +GH+D++ L
Sbjct: 121 LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAIL-LSCIHITIKNGHVDMMIL 179

Query: 63  L 63
           L
Sbjct: 180 L 180

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 69.5 bits (171), Expect = 3e-14
 Identities = 5/72 (6%), Positives = 21/72 (29%), Gaps = 12/72 (16%)

Query: 4   VSVTDDHGFSP-LHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRL 62
            +  +   F P +  A     +++++ L +    +        +           +I ++
Sbjct: 187 TNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIY-------SANLENVLLDDAEIAKM 239

Query: 63  L----AVQNNQD 70
           +        +  
Sbjct: 240 IIEKHVEYKSDS 251

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 56.4 bits (137), Expect = 1e-09
 Identities = 9/64 (14%), Positives = 20/64 (31%), Gaps = 7/64 (10%)

Query: 11 GFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL----AVQ 66
          G             K ++  L         +    +  + A A  ++ +V  L    A++
Sbjct: 1  GMDLSRINT--WKSKQLKSFLS-SKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALK 57

Query: 67 NNQD 70
          N  +
Sbjct: 58 NLLE 61

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 51.0 bits (123), Expect = 8e-08
 Identities = 2/45 (4%), Positives = 14/45 (31%)

Query: 13  SPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHL 57
           S           ++ ++++++     + +   D  +        +
Sbjct: 223 SANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNNKLDEI 267

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 85.3 bits (212), Expect = 5e-20
 Identities = 21/61 (34%), Positives = 26/61 (42%)

Query: 3  YVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRL 62
          Y+ + +D G + LH A   G    VE L   GA V    RG  T LHLA          +
Sbjct: 37 YLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACV 96

Query: 63 L 63
          L
Sbjct: 97 L 97

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 82.2 bits (204), Expect = 7e-19
 Identities = 20/57 (35%), Positives = 27/57 (47%)

Query: 7   TDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
               G +PLH A +     ++ELLL+ GA   A   G  TPL  A    +  + RLL
Sbjct: 188 EPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLL 244

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 80.3 bits (199), Expect = 3e-18
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 3/60 (5%)

Query: 7  TDDHGFSPLHWACKEGHLKLVELLLQRGA---RVNATNRGDDTPLHLAAAHGHLDIVRLL 63
            + G + LH A    H   ++ LL   A    ++  N    T LHLAA  G    V  L
Sbjct: 5  VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 80.3 bits (199), Expect = 3e-18
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNA-TNRGDDTPLHLAAAHGHLDIVRL 62
           +   +  G +PLH A      ++V LL   GA +N        TPLHLA       ++ L
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLEL 210

Query: 63  L 63
           L
Sbjct: 211 L 211

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 79.5 bits (197), Expect = 7e-18
 Identities = 11/60 (18%), Positives = 17/60 (28%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
            +     G +PL  A    +  L  LL   GA          +P   + +    D     
Sbjct: 218 PTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEG 277

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 65.6 bits (161), Expect = 6e-13
 Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 1/59 (1%)

Query: 6   VTDDHGFSPLHWACKEGHLKLV-ELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
            T D   +P     +                ++ A N    TPLH+A  H   ++VRLL
Sbjct: 119 CTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLL 177

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 63.7 bits (156), Expect = 3e-12
 Identities = 12/89 (13%), Positives = 22/89 (24%), Gaps = 16/89 (17%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNA-------------TNRGDDTPLHL 50
           V V +  G + LH AC+        +LLQ                    T      P  +
Sbjct: 71  VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAV 130

Query: 51  AAAHGHLDIVRLLAVQNNQDLTKINFKDQ 79
            +     +               +  ++ 
Sbjct: 131 DSQPNPENEEEPRDEDWRLQ---LEAENY 156

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 46.4 bits (111), Expect = 2e-06
 Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 1/42 (2%)

Query: 37 VNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKD 78
                  DT LHLA  H H   +  L +  +     ++ ++
Sbjct: 2  FGYVTEDGDTALHLAVIHQHEPFLDFL-LGFSAGHEYLDLQN 42

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 84.0 bits (209), Expect = 6e-20
 Identities = 18/75 (24%), Positives = 30/75 (40%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           + + ++   +PLH A       +V LL+  GA   A +R   T  HLA  H     +R L
Sbjct: 39  LDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRAL 98

Query: 64  AVQNNQDLTKINFKD 78
                     +  ++
Sbjct: 99  LDSAAPGTLDLEARN 113

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 83.7 bits (208), Expect = 1e-19
 Identities = 22/60 (36%), Positives = 31/60 (51%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           V+     G S LH A   G L LV  L++ GA  +  N  +DTPL +A +   +DI+R  
Sbjct: 176 VNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGK 235

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 81.0 bits (201), Expect = 1e-18
 Identities = 24/55 (43%), Positives = 30/55 (54%)

Query: 9   DHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
             G SPL  A +   L +V+LLLQ GA VNA      + LH A+  G L +VR L
Sbjct: 148 KSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTL 202

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 78.3 bits (194), Expect = 9e-18
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGD-DTPLHLAAAHGHLDIVRL 62
           +   +  G + LH A      + V+LLL+RGA ++A +     +PL  A  +  L +V+L
Sbjct: 109 LEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQL 168

Query: 63  L 63
           L
Sbjct: 169 L 169

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 78.3 bits (194), Expect = 1e-17
 Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 8  DDHGFSPLHWACKEGHLKLVELLL----QRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
          D+ G +PLH A  +G+L  V  L+    Q G  ++  N    TPLHLA       +VRLL
Sbjct: 6  DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 44.0 bits (105), Expect = 1e-05
 Identities = 7/32 (21%), Positives = 13/32 (40%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGA 35
            S+ + H  +PL  A     + ++     R A
Sbjct: 209 SSLKNCHNDTPLMVARSRRVIDILRGKATRPA 240

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 39.7 bits (94), Expect = 3e-04
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 37 VNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSW 81
              +   DTPLH+A   G+L  V  L     Q   +++  +   
Sbjct: 2  ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLR 46

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 80.7 bits (200), Expect = 6e-20
 Identities = 22/56 (39%), Positives = 31/56 (55%)

Query: 8  DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
                 L  A + G    V +L+  GA V A ++   TPLHLAA +GHL++V+LL
Sbjct: 21 GSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLL 76

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 70.7 bits (174), Expect = 4e-16
 Identities = 22/60 (36%), Positives = 38/60 (63%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           V+  D +G +PLH A + GHL++V+LLL+ GA V A ++   T   ++  +G+ D+  +L
Sbjct: 50  VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 64.1 bits (157), Expect = 1e-13
 Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 3/46 (6%)

Query: 18 ACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
               H      L+ RG+ + +        L  AA  G  D VR+L
Sbjct: 1  GSSHHHHHHSSGLVPRGSHMGSDLG---KKLLEAARAGQDDEVRIL 43

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 82.4 bits (205), Expect = 7e-20
 Identities = 28/60 (46%), Positives = 35/60 (58%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           V   D  G  PLH AC  GH ++ ELL++ GA VN  +    TPLH AAA G  +I +LL
Sbjct: 68  VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLL 127

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 80.5 bits (200), Expect = 3e-19
 Identities = 22/56 (39%), Positives = 34/56 (60%)

Query: 8  DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
          +    +PLH+A     + +VE LLQ GA V+A ++G   PLH A ++GH ++  LL
Sbjct: 39 EGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELL 94

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 77.8 bits (193), Expect = 4e-18
 Identities = 26/60 (43%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           V+V D   F+PLH A  +G  ++ +LLLQ GA     NR  +TPL L    G  DI  LL
Sbjct: 101 VNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL-VKDGDTDIQDLL 159

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 71.3 bits (176), Expect = 1e-15
 Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 1/57 (1%)

Query: 8  DDHGFSPLHWACKEGHLKLVELLLQR-GARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
          +      L  A K G ++ V+ L                TPLH AA +  + +V  L
Sbjct: 5  NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYL 61

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 85.6 bits (213), Expect = 8e-20
 Identities = 23/60 (38%), Positives = 36/60 (60%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
              +D    +PLH A     +++V+LLLQ GA V+A ++G   PLH A ++GH ++  LL
Sbjct: 51  CHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELL 110

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 84.5 bits (210), Expect = 2e-19
 Identities = 23/60 (38%), Positives = 34/60 (56%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           V+  +    +PLH A +  H  ++E+L + GA++NA +    T LH AA  GHL   RLL
Sbjct: 240 VNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLL 299

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 84.5 bits (210), Expect = 2e-19
 Identities = 27/60 (45%), Positives = 35/60 (58%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           V   D  G  PLH AC  GH ++ ELLL+ GA VNA +    TPLH AA+   +++  LL
Sbjct: 84  VHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLL 143

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 80.6 bits (200), Expect = 5e-18
 Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 9/79 (11%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           V+  D   F+PLH A  +  +++  LLL  GA     N    + + +A      + +   
Sbjct: 117 VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYE 176

Query: 64  ---------AVQNNQDLTK 73
                    A + +    K
Sbjct: 177 FKGHSLLQAAREADLAKVK 195

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 77.1 bits (191), Expect = 9e-17
 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKL---VELLLQRGARVNATNRGDDTPLHLAAAHGHLDIV 60
                    + LH A    H K     ELLL++GA VN  N+   TPLH+AA   H D++
Sbjct: 204 NFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVM 263

Query: 61  RLL 63
            +L
Sbjct: 264 EVL 266

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 76.0 bits (188), Expect = 2e-16
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 4  VSVTDDHGFSPLHWACKEGHLK-LVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRL 62
            +T ++    L  A + G+ + L+ LL       +A++    TPLHLAA +  + IV+L
Sbjct: 17 AVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQL 76

Query: 63 L 63
          L
Sbjct: 77 L 77

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 66.7 bits (164), Expect = 4e-13
 Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 9/71 (12%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           ++  D  G + LH A   GHL+   LLL  G+  +  +    T   +       + V+ +
Sbjct: 273 MNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGN-----EAVQQI 327

Query: 64  ----AVQNNQD 70
                     D
Sbjct: 328 LSESTPMRTSD 338

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 59.4 bits (145), Expect = 1e-10
 Identities = 14/84 (16%), Positives = 22/84 (26%), Gaps = 24/84 (28%)

Query: 4   VSVTDDHGFSPLHWACKEGHL---------------------KLVELLLQRGARVNATNR 42
            ++ + HG S +  A                             V+  L          +
Sbjct: 150 PTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQ 209

Query: 43  GDDTPLHLAAAHGH---LDIVRLL 63
             +T LH A A  H     +  LL
Sbjct: 210 SHETALHCAVASLHPKRKQVAELL 233

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 49.8 bits (120), Expect = 2e-07
 Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 7/52 (13%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHG 55
            S+    GF+      +      V+ +L     +  ++   D  L  A+  G
Sbjct: 306 PSIISLQGFTAAQMGNEA-----VQQILSESTPMRTSD--VDYRLLEASKAG 350

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 44.0 bits (105), Expect = 2e-05
 Identities = 11/57 (19%), Positives = 17/57 (29%), Gaps = 3/57 (5%)

Query: 25 KLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSW 81
          K    L    A+   T       L  AA  G+ + +  L    N +    +  D   
Sbjct: 5  KSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVN---CHASDGRK 58

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 84.8 bits (211), Expect = 9e-20
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 4/84 (4%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
             +   +G +P   A   G +KL++L L +GA VN  +    T    AA +G +  ++ L
Sbjct: 65  PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFL 124

Query: 64  ----AVQNNQDLTKINFKDQSWLG 83
               A  N +  TK + +     G
Sbjct: 125 YKRGANVNLRRKTKEDQERLRKGG 148

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 81.7 bits (203), Expect = 1e-18
 Identities = 19/57 (33%), Positives = 31/57 (54%)

Query: 7  TDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           ++ G++PLH A +     +VELLL+ GA      +   TP  LAA  G + +++L 
Sbjct: 35 EEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLF 91

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 81.4 bits (202), Expect = 1e-18
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLL-QRGARVNATNRGDDTPLHLAAAHGHLDIVRL 62
           V+V  + G +PL  A ++ HL LV+ LL Q    +N T+    T L LA       I  L
Sbjct: 212 VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAEL 271

Query: 63  L 63
           L
Sbjct: 272 L 272

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 77.1 bits (191), Expect = 4e-17
 Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 11 GFSPLHWACKEGHLKLVELLLQRGARVNA-TNRGDDTPLHLAAAHGHLDIVRLL 63
              L  A +   + LV+ LL+ GA VN     G  TPLH A      DIV LL
Sbjct: 5  DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELL 58

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 77.1 bits (191), Expect = 5e-17
 Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 7/75 (9%)

Query: 8   DDHGFSPLHWACKEGHLK----LVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           D+ G + L  A           +  LLL  GA VN       TPL LA    HL +V+ L
Sbjct: 179 DNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRL 238

Query: 64  AVQNNQDLTKINFKD 78
             Q + +   IN  D
Sbjct: 239 LEQEHIE---INDTD 250

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 76.4 bits (189), Expect = 9e-17
 Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 13/85 (15%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDD----------TPLHLAAA 53
           V+  D +GF+    A   G +K ++ L +RGA VN   +  +          T L  AA 
Sbjct: 98  VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE 157

Query: 54  HGHLDIVRLLAVQNNQDLTKINFKD 78
            GH++++++L  +   D   +N  D
Sbjct: 158 KGHVEVLKILLDEMGAD---VNACD 179

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 70.6 bits (174), Expect = 9e-15
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLL-QRGARVNATNRGDDTPLHLAAAHGH----LD 58
                  G + L  A ++GH++++++LL + GA VNA +      L  A           
Sbjct: 141 QERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEA 200

Query: 59  IVRLL 63
           I  LL
Sbjct: 201 ITHLL 205

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 51.3 bits (124), Expect = 5e-08
 Identities = 12/35 (34%), Positives = 18/35 (51%)

Query: 7   TDDHGFSPLHWACKEGHLKLVELLLQRGARVNATN 41
           TD  G + L  A +    K+ ELL +RGA  +  +
Sbjct: 249 TDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score = 85.2 bits (211), Expect = 9e-20
 Identities = 30/125 (24%), Positives = 47/125 (37%), Gaps = 10/125 (8%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSH 158
                L L    + G  G  W+ +     +  KI  +++   + S     E   L    H
Sbjct: 21  FQSMPLQLLEVKARGRFGCVWKAQLLNEYVAVKIFPIQD---KQSWQNEYEVYSLPGMKH 77

Query: 159 PNVLPVIGCVNSPPD----LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGM 214
            N+L  IG           L +I+ +   GSL   L      VV + +    A  +ARG+
Sbjct: 78  ENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDFLKAN---VVSWNELCHIAETMARGL 134

Query: 215 AFLHS 219
           A+LH 
Sbjct: 135 AYLHE 139

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score = 85.3 bits (211), Expect = 1e-19
 Identities = 31/145 (21%), Positives = 56/145 (38%), Gaps = 21/145 (14%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEE-----FPKL 153
           + L++L L   I  G  G  ++G   +  +  K+ +  N      ++F  E      P +
Sbjct: 10  LDLDNLKLLELIGRGRYGAVYKGSLDERPVAVKVFSFAN-----RQNFINEKNIYRVPLM 64

Query: 154 RIFSHPNVLPVIGC-----VNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAV 208
               H N+   I        +   + +++ +Y   GSL   L        D+  + R A 
Sbjct: 65  E---HDNIARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYLSLH---TSDWVSSCRLAH 118

Query: 209 DVARGMAFLHSLERIIPQYQLNSRH 233
            V RG+A+LH+       Y+    H
Sbjct: 119 SVTRGLAYLHTELPRGDHYKPAISH 143

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 81.7 bits (203), Expect = 1e-19
 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 3/71 (4%)

Query: 8   DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQN 67
           D  GF+ +H A + G L  ++ LL+  A VN  +   + PLHLAA  GHL +V  L    
Sbjct: 67  DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 126

Query: 68  NQDLTKINFKD 78
             +   +  ++
Sbjct: 127 ASN---VGHRN 134

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 79.7 bits (198), Expect = 6e-19
 Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGAR-VNATNRGDDTPLHLAAAHGHLDIVRL 62
           V++ D+ G  PLH A KEGHL++VE L++  A  V   N   DT   LA  +G  ++V L
Sbjct: 96  VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSL 155

Query: 63  L 63
           +
Sbjct: 156 M 156

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 77.0 bits (191), Expect = 6e-18
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 4  VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
          V+  +  G + L    K G+ ++   LL RGA  +  +R     +H AA  G LD ++ L
Sbjct: 31 VNAQNGFGRTALQVM-KLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTL 89

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 74.7 bits (185), Expect = 4e-17
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 8  DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           +   + L  A   G L+ +  LLQ    VNA N    T L      G+ +I R L
Sbjct: 2  AEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ-VMKLGNPEIARRL 56

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 42.8 bits (102), Expect = 2e-05
 Identities = 8/32 (25%), Positives = 13/32 (40%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGA 35
           V   +  G +    A   G  ++V L+   GA
Sbjct: 130 VGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 83.4 bits (207), Expect = 1e-19
 Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 2/77 (2%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           ++  ++   +PLH A      ++ E LL  G      +   +TPLHLA   G L  V +L
Sbjct: 38  LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVL 97

Query: 64  --AVQNNQDLTKINFKD 78
             +       + +   +
Sbjct: 98  TQSCTTPHLHSILKATN 114

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 80.7 bits (200), Expect = 1e-18
 Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 10/82 (12%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGA------RVNATNRGDDTPLHLAAAHGHL 57
             + D  G +PLH AC++G L  V +L Q          + ATN    T LHLA+ HG+L
Sbjct: 71  PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYL 130

Query: 58  DIVRLLAVQNNQDLTKINFKDQ 79
            IV LL V    D   +N ++ 
Sbjct: 131 GIVELL-VSLGAD---VNAQEP 148

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 80.3 bits (199), Expect = 2e-18
 Identities = 17/57 (29%), Positives = 23/57 (40%)

Query: 7   TDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
              +G + LH A    +  LV LLL+ GA VN       +P  L        I + L
Sbjct: 147 EPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQL 203

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 79.9 bits (198), Expect = 2e-18
 Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGD-DTPLHLAAAHGHLDIVRL 62
           +  T+ +G + LH A   G+L +VELL+  GA VNA    +  T LHLA    + D+V L
Sbjct: 110 LKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSL 169

Query: 63  L 63
           L
Sbjct: 170 L 170

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 76.0 bits (188), Expect = 6e-17
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 8  DDHGFSPLHWACKEGH----LKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           + G S LH A         ++++  +    A +N  N    TPLHLA      +I   L
Sbjct: 5  TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL 64

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 61.4 bits (150), Expect = 1e-11
 Identities = 6/57 (10%), Positives = 13/57 (22%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIV 60
           V+     G+SP          ++ + L Q            +            +  
Sbjct: 177 VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEFT 233

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 82.9 bits (206), Expect = 2e-19
 Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 3/75 (4%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           ++   + G + LH A  +   ++ + L++ GA V   ++ +  PLH AA+ G L ++ LL
Sbjct: 100 LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELL 159

Query: 64  AVQNNQDLTKINFKD 78
                     +N++D
Sbjct: 160 CGLGKSA---VNWQD 171

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 82.1 bits (204), Expect = 3e-19
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 3/59 (5%)

Query: 8  DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDD---TPLHLAAAHGHLDIVRLL 63
          D  G  PLHW+      ++   LL +   VN  +  DD   TP H+A + G+L++V+ L
Sbjct: 33 DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSL 91

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 78.6 bits (195), Expect = 5e-18
 Identities = 26/61 (42%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRG-ARVNATNRGDDTPLHLAAAHGHLDIVRL 62
           V + D     PLH A   G LKL+ELL   G + VN  ++   TPL  A A GH D   L
Sbjct: 133 VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVL 192

Query: 63  L 63
           L
Sbjct: 193 L 193

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 75.9 bits (188), Expect = 6e-17
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 7   TDDHGFSPLHWACKEGHLKLVELLLQR--GARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
            DD G++P H AC  G+L++V+ L  R     +N       T LHLA      ++ + L
Sbjct: 68  PDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFL 126

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 75.2 bits (186), Expect = 1e-16
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 11 GFSPLHWACKEGHLKLV-ELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
             PLH AC E     V ELL  + + +   ++    PLH + +    +I   L
Sbjct: 2  SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFL 55

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 65.2 bits (160), Expect = 5e-13
 Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 4/61 (6%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLL-QRGARVNATNRGDDTPLHLAAAHGHLDIVRL 62
           V+  D  G++PL  A  EGH     LL+ + GA  +  +        +A    +  + + 
Sbjct: 167 VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKF 223

Query: 63  L 63
            
Sbjct: 224 F 224

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 84.1 bits (209), Expect = 2e-19
 Identities = 19/56 (33%), Positives = 30/56 (53%)

Query: 8   DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
              G + LH A  +G+ ++++LL+Q    VN  +    TPLH AA  G  +  R+L
Sbjct: 196 AKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRIL 251

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 83.3 bits (207), Expect = 3e-19
 Identities = 21/68 (30%), Positives = 36/68 (52%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           ++  D+ G+ PLH A   G+L + E L+ +GA V A N   DTPL +A      ++++  
Sbjct: 99  INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNE 158

Query: 64  AVQNNQDL 71
             +   D+
Sbjct: 159 VNRQGVDI 166

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 81.4 bits (202), Expect = 2e-18
 Identities = 20/60 (33%), Positives = 35/60 (58%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           ++  +  G + LH AC + ++ +V+ L++ GA +N  +     PLH AA+ G+LDI   L
Sbjct: 66  INYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYL 125

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 76.0 bits (188), Expect = 2e-16
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 4  VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
            V  D G +    AC  G  + V  LL+RGA +N  N    T LH A    ++D+V+ L
Sbjct: 34 TKVKFDDG-AVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFL 92

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 73.7 bits (182), Expect = 9e-16
 Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 4/76 (5%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           V++ D  G++PLH A   G  +   +L++    + A N+   T   +A       +  L 
Sbjct: 225 VNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQ 284

Query: 64  AVQNNQDLTKINFKDQ 79
             QN       + K +
Sbjct: 285 KKQNL----LHSEKRE 296

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 69.5 bits (171), Expect = 3e-14
 Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 4/77 (5%)

Query: 2   YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVR 61
             V+       +      +       + L           +   T LH+AAA G+ ++++
Sbjct: 157 NEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLK 216

Query: 62  LLAVQNNQDLTKINFKD 78
           LL +Q   D   +N KD
Sbjct: 217 LL-IQARYD---VNIKD 229

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 62.9 bits (154), Expect = 6e-12
 Identities = 8/56 (14%), Positives = 14/56 (25%), Gaps = 1/56 (1%)

Query: 8  DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
          D             G    +E  + +  +       D      A + G  + V  L
Sbjct: 5  DAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKF-DDGAVFLAACSSGDTEEVLRL 59

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 84.6 bits (210), Expect = 3e-19
 Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 1/75 (1%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           V+  D    +PL  A      +LV  L++ GA     N+ + + LH AAA+    ++  +
Sbjct: 159 VNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYM 218

Query: 64  AVQNNQDLTKINFKD 78
            + + +    I   D
Sbjct: 219 -LNSTKLKGDIEELD 232

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 84.2 bits (209), Expect = 3e-19
 Identities = 21/56 (37%), Positives = 34/56 (60%)

Query: 8   DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           D+ G +P+  A +EG +++V  L+Q+GA V A +  D T   LA A+ H +IV + 
Sbjct: 310 DEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIF 365

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 79.2 bits (196), Expect = 2e-17
 Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 8   DDHGFSPLHWACKEGHLKLVELLL-QRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
              G + LH+A +  ++ +V+ L+ ++G+  +  +    TP+ LAA  G +++V  L
Sbjct: 276 KYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYL 332

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 74.6 bits (184), Expect = 9e-16
 Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 8/65 (12%)

Query: 7   TDDHGFSPLHWACKEGHLKLVELLL--------QRGARVNATNRGDDTPLHLAAAHGHLD 58
              H  + LHW       +  E L+          GA VNA +  ++TPL LA       
Sbjct: 121 DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRR 180

Query: 59  IVRLL 63
           +V  L
Sbjct: 181 LVAYL 185

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 74.2 bits (183), Expect = 1e-15
 Identities = 12/79 (15%), Positives = 24/79 (30%), Gaps = 6/79 (7%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
            +  +      LH     G   + E + +    +        T LH  A++   +    L
Sbjct: 87  PTEPEPESPIKLHTEAA-GSYAITEPITRESVNIIDPRHNR-TVLHWIASNSSAEKSEDL 144

Query: 64  AVQNNQDLTK----INFKD 78
            V   ++       +N  D
Sbjct: 145 IVHEAKECIAAGADVNAMD 163

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 69.2 bits (170), Expect = 6e-14
 Identities = 13/85 (15%), Positives = 28/85 (32%), Gaps = 10/85 (11%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQ---RGARVNATNRGDDTPLHLAAAHGHLD-- 58
            ++ +    S LH A       ++  +L        +   +R   T L + A +   D  
Sbjct: 192 PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQV 251

Query: 59  -IVRLL----AVQNNQDLTKINFKD 78
              +LL    A  +     + + + 
Sbjct: 252 ASAKLLVEKGAKVDYDGAARKDSEK 276

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 68.4 bits (168), Expect = 1e-13
 Identities = 8/56 (14%), Positives = 12/56 (21%), Gaps = 1/56 (1%)

Query: 8   DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
             +   P       G+  L +                   LH   A G   I   +
Sbjct: 58  QHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLH-TEAAGSYAITEPI 112

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 67.7 bits (166), Expect = 2e-13
 Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 14/82 (17%)

Query: 8   DDHGFSPLHWACKEGH---LKLVELLLQRGARVNATNRGDD--------TPLHLAAAHGH 56
           D +G + L           +   +LL+++GA+V+               T LH AA   +
Sbjct: 232 DRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSN 291

Query: 57  LDIVRLLAVQNNQDLTKINFKD 78
           + IV+ L  +   +    + +D
Sbjct: 292 MPIVKYLVGEKGSN---KDKQD 310

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 49.6 bits (119), Expect = 3e-07
 Identities = 7/68 (10%), Positives = 16/68 (23%), Gaps = 13/68 (19%)

Query: 7  TDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL--- 63
          +       L  A  +G++K            N        P      +G+  +       
Sbjct: 33 SITSSQHSLLEASYDGYIKRQR---------NELQHYSLYPNPQGYGNGNDFLGDFNHTN 83

Query: 64 -AVQNNQD 70
            +    +
Sbjct: 84 LQIPTEPE 91

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 42.6 bits (101), Expect = 4e-05
 Identities = 4/29 (13%), Positives = 9/29 (31%)

Query: 7   TDDHGFSPLHWACKEGHLKLVELLLQRGA 35
            D    +    A    H  +V++  +   
Sbjct: 342 VDATDHTARQLAQANNHHNIVDIFDRCRP 370

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 80.6 bits (200), Expect = 4e-19
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGD-DTPLHLAAAHGHLDIVRL 62
           V   D++G + L +    G  K V LL + GA ++  +     T LH+AA +   ++V  
Sbjct: 69  VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEA 128

Query: 63  L 63
           L
Sbjct: 129 L 129

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 77.2 bits (191), Expect = 8e-18
 Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 4/71 (5%)

Query: 8   DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL---- 63
              G + LH A      ++VE L++ GA +   +    T L LA                
Sbjct: 107 MRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFG 166

Query: 64  AVQNNQDLTKI 74
                + +  +
Sbjct: 167 RRIGLEKVINV 177

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 74.8 bits (185), Expect = 6e-17
 Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 8  DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
               +P   A ++   + +  LL+    V+A +    T L   A  G    VRLL
Sbjct: 41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLL 95

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 69.8 bits (172), Expect = 4e-15
 Identities = 13/60 (21%), Positives = 17/60 (28%), Gaps = 3/60 (5%)

Query: 4  VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           S T   G        K+GH           A V +     +TP   AA       +  L
Sbjct: 7  GSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSE---YETPWWTAARKADEQALSQL 63

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 49.4 bits (119), Expect = 9e-08
 Identities = 9/60 (15%), Positives = 18/60 (30%), Gaps = 17/60 (28%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           + V D+ G + L  A +          +Q G R+                     ++ +L
Sbjct: 136 IEVEDERGLTALELAREILKTTPKGNPMQFGRRIG-----------------LEKVINVL 178

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 79.4 bits (197), Expect = 4e-19
 Identities = 29/56 (51%), Positives = 40/56 (71%)

Query: 8  DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
          D++G +PL+ A   GHL++VE+LL+ GA VNA +    TPLHLAA  GHL+I  +L
Sbjct: 44 DEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVL 99

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 77.4 bits (192), Expect = 2e-18
 Identities = 22/56 (39%), Positives = 35/56 (62%)

Query: 8   DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           D  GF+PLH A   GHL++ E+LL+ GA VNA ++   T   ++  +G+ D+  +L
Sbjct: 77  DAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 72.8 bits (180), Expect = 1e-16
 Identities = 23/50 (46%), Positives = 30/50 (60%)

Query: 14 PLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           L  A + G    V +L+  GA VNA +    TPL+LA AHGHL+IV +L
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVL 66

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 39.7 bits (94), Expect = 1e-04
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 3/33 (9%)

Query: 33 RGARVNATNRGDD--TPLHLAAAHGHLDIVRLL 63
          RG+  +  + G D    L  AA  G  D VR+L
Sbjct: 2  RGSHHHHHH-GSDLGKKLLEAARAGQDDEVRIL 33

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 82.1 bits (203), Expect = 4e-19
 Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 14/84 (16%)

Query: 8   DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDD-------------TPLHLAAAH 54
              G S LH A ++  L+ V+LL++ GA V+    G                PL LAA  
Sbjct: 87  FYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACT 146

Query: 55  GHLDIVRLLAVQNNQDLTKINFKD 78
              D+V  L ++N      +   D
Sbjct: 147 KQWDVVTYL-LENPHQPASLEATD 169

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 75.2 bits (185), Expect = 2e-16
 Identities = 15/56 (26%), Positives = 23/56 (41%)

Query: 8   DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           +    S L     +G L++   L         +N    TPL LAA  G ++I R +
Sbjct: 185 NSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHI 240

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 59.4 bits (144), Expect = 7e-11
 Identities = 20/93 (21%), Positives = 28/93 (30%), Gaps = 26/93 (27%)

Query: 6   VTDDHGFSPLHWACKEGHLKLVELLLQRG---ARVNATNRGDDTPLHLAAAH-------- 54
                G  PL  A       +V  LL+     A + AT+   +T LH             
Sbjct: 131 TCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENS 190

Query: 55  --------GHLDIVRLL-------AVQNNQDLT 72
                   G L +   L        + N+Q LT
Sbjct: 191 ALVIHMYDGLLQMGARLCPTVQLEEISNHQGLT 223

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 58.3 bits (141), Expect = 2e-10
 Identities = 15/70 (21%), Positives = 23/70 (32%), Gaps = 14/70 (20%)

Query: 8   DDHGFSPLHWA---CKEGHLKLVELLLQRG-----------ARVNATNRGDDTPLHLAAA 53
              G + L  A    ++G    +  LLQ             A+         + LH+A  
Sbjct: 40  GSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIE 99

Query: 54  HGHLDIVRLL 63
              L  V+LL
Sbjct: 100 KRSLQCVKLL 109

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 53.3 bits (128), Expect = 1e-08
 Identities = 11/42 (26%), Positives = 20/42 (47%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDD 45
             +++  G +PL  A KEG +++   +LQR     A +    
Sbjct: 214 EEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAAAHHHHH 255

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 39.8 bits (93), Expect = 3e-04
 Identities = 9/61 (14%), Positives = 14/61 (22%), Gaps = 11/61 (18%)

Query: 14 PLHWACKEGHLKLVELLLQ--------RGARVNATNRGDDTPLHLAAAH---GHLDIVRL 62
           L      G  + +  LL+                     T L  A  +   G    +  
Sbjct: 5  RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMP 64

Query: 63 L 63
          L
Sbjct: 65 L 65

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 81.5 bits (202), Expect = 4e-19
 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 1/75 (1%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
            S  ++ G + LH A    +  +V+ L+  GA VN+ +    TPLH AA+     I   L
Sbjct: 47  PSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMAL 106

Query: 64  AVQNNQDLTKINFKD 78
            VQ+   +      D
Sbjct: 107 -VQHGAAIFATTLSD 120

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 74.2 bits (183), Expect = 3e-16
 Identities = 13/53 (24%), Positives = 20/53 (37%)

Query: 11 GFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
              L  A   G L++V+  ++     +  N    T LH A    +  IV  L
Sbjct: 21 PLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFL 73

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 56.1 bits (136), Expect = 8e-10
 Identities = 13/59 (22%), Positives = 17/59 (28%), Gaps = 5/59 (8%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDD--TPLHLAAAHGHLDIV 60
           + + +      L     E      EL  + G  V    R     T    AA HG    V
Sbjct: 149 MGLMNSGAVYALWDYSAEFGD---ELSFREGESVTVLRRDGPEETDWWWAALHGQEGYV 204

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 56.1 bits (136), Expect = 8e-10
 Identities = 12/75 (16%), Positives = 22/75 (29%), Gaps = 7/75 (9%)

Query: 6   VTDDHGFSPLHWA--CKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
            T   G +        +EG+      L      +   N G    L   +A    D +   
Sbjct: 116 TTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSA-EFGDELSFR 174

Query: 64  AVQNNQDLTKINFKD 78
                + +T +  +D
Sbjct: 175 ---EGESVT-VLRRD 185

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 3/40 (7%)

Query: 27 VELLLQRGARVNATNRGDDTP---LHLAAAHGHLDIVRLL 63
          +  +L++        R    P   L  AA  G L++V+  
Sbjct: 1  MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQA 40

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 38.8 bits (91), Expect = 7e-04
 Identities = 8/43 (18%), Positives = 9/43 (20%), Gaps = 1/43 (2%)

Query: 8   DDHGFSPLHWACKEGHLKLVE-LLLQRGARVNATNRGDDTPLH 49
           D    +   WA   G    V         RV           H
Sbjct: 185 DGPEETDWWWAALHGQEGYVPRNYFGLFPRVKPQRSKVKHHHH 227

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 82.1 bits (204), Expect = 5e-19
 Identities = 19/60 (31%), Positives = 30/60 (50%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
             + ++   +PL  A +EG  +  ++LL   A  + T+  D  P  +A    H DIVRLL
Sbjct: 183 KDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 242

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 80.6 bits (200), Expect = 2e-18
 Identities = 21/57 (36%), Positives = 31/57 (54%)

Query: 7   TDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
            DD G S LHWA    ++    +LL+ GA  +  N  ++TPL LAA  G  +  ++L
Sbjct: 153 VDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVL 209

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 79.8 bits (198), Expect = 3e-18
 Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 3/72 (4%)

Query: 7   TDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQ 66
           TD  G + LH A +       + LL+  A  N  +    TPLH A +     + ++L   
Sbjct: 53  TDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN 112

Query: 67  NNQDLTKINFKD 78
              D   ++ + 
Sbjct: 113 RATD---LDARM 121

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 78.7 bits (195), Expect = 8e-18
 Identities = 17/56 (30%), Positives = 27/56 (48%)

Query: 8   DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
              G +PL  A +     ++E L+   A VNA +    + LH AAA  ++D   +L
Sbjct: 121 MHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 176

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 71.7 bits (177), Expect = 2e-15
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGAR-VNATNRGDDTPLHLAAAHGHLDIVRL 62
            ++ D+ G +PLH A       + ++L++  A  ++A      TPL LAA      ++  
Sbjct: 83  ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLED 142

Query: 63  L 63
           L
Sbjct: 143 L 143

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 66.3 bits (163), Expect = 3e-13
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 14/74 (18%)

Query: 4  VSVTDDHGFSPLHWAC-------------KEGHLKLVELLLQRGARV-NATNRGDDTPLH 49
          V+V    GF+PL  A              +E    ++   + +GA + N T+R  +T LH
Sbjct: 3  VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALH 62

Query: 50 LAAAHGHLDIVRLL 63
          LAA +   D  + L
Sbjct: 63 LAARYSRSDAAKRL 76

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 40.5 bits (96), Expect = 2e-04
 Identities = 8/35 (22%), Positives = 12/35 (34%)

Query: 7   TDDHGFSPLHWACKEGHLKLVELLLQRGARVNATN 41
           TD     P   A +  H  +V LL       +  +
Sbjct: 219 TDHMDRLPRDIAQERMHHDIVRLLDLEHHHHHHHH 253

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 81.3 bits (202), Expect = 5e-19
 Identities = 22/60 (36%), Positives = 33/60 (55%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           V+  DD G S LHWA    ++    +LL+ GA  +  N  ++TPL LAA  G  +  ++L
Sbjct: 118 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVL 177

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 80.9 bits (201), Expect = 7e-19
 Identities = 19/56 (33%), Positives = 29/56 (51%)

Query: 8   DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           ++   +PL  A +EG  +  ++LL   A  + T+  D  P  +A    H DIVRLL
Sbjct: 155 NNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 210

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 79.8 bits (198), Expect = 2e-18
 Identities = 16/57 (28%), Positives = 25/57 (43%)

Query: 7  TDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
          TD  G + LH A +       + LL+  A  N  +    TPLH A +     + ++L
Sbjct: 21 TDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQIL 77

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 78.2 bits (194), Expect = 8e-18
 Identities = 17/60 (28%), Positives = 28/60 (46%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           +      G +PL  A +     ++E L+   A VNA +    + LH AAA  ++D   +L
Sbjct: 85  LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 144

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 74.8 bits (185), Expect = 1e-16
 Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 5/76 (6%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGAR-VNATNRGDDTPLHLAAAHGHLDIVRL 62
            ++ D+ G +PLH A       + ++L++  A  ++A      TPL LAA      ++  
Sbjct: 51  ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLED 110

Query: 63  LAVQNNQDLTKINFKD 78
           L + ++ D   +N  D
Sbjct: 111 L-INSHAD---VNAVD 122

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 54.7 bits (133), Expect = 2e-09
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 5/58 (8%)

Query: 22 GHLKLVELLLQRGARV-NATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKD 78
              ++   + +GA + N T+R  +T LHLAA +   D  + L ++ + D    N +D
Sbjct: 2  DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRL-LEASAD---ANIQD 55

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 44.3 bits (106), Expect = 9e-06
 Identities = 10/43 (23%), Positives = 14/43 (32%), Gaps = 7/43 (16%)

Query: 7   TDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLH 49
           TD     P   A +  H  +V LL +     +         LH
Sbjct: 187 TDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS-------PQLH 222

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 82.1 bits (203), Expect = 7e-19
 Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 15/85 (17%)

Query: 8   DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGD--------------DTPLHLAAA 53
              G + LH A +  ++ LV LL++ GA V A   GD              + PL LAA 
Sbjct: 98  YYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAAC 157

Query: 54  HGHLDIVRLLAVQNNQDLTKINFKD 78
              L IV+ L +QN+     I+ +D
Sbjct: 158 TNQLAIVKFL-LQNSWQPADISARD 181

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 69.0 bits (169), Expect = 3e-14
 Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 7/55 (12%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLD 58
             +T+  G +PL  A   G + ++  +LQR               H AA H H  
Sbjct: 226 EEITNRKGLTPLALAASSGKIGVLAYILQREIHEP-------ECRHAAAHHHHHH 273

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 62.5 bits (152), Expect = 7e-12
 Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 14/70 (20%)

Query: 8   DDHGFSPLHWA---CKEGHLKLVELLLQRGAR-------VNATNRGDD----TPLHLAAA 53
            + G + L  A      G    + LLL    +       VNA+         T LH+A  
Sbjct: 51  PETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIE 110

Query: 54  HGHLDIVRLL 63
             ++ +V LL
Sbjct: 111 RRNMTLVTLL 120

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 61.7 bits (150), Expect = 2e-11
 Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 3/67 (4%)

Query: 8   DDHGFSPLHWACKEGHLKLVELLLQRG---ARVNATNRGDDTPLHLAAAHGHLDIVRLLA 64
              G  PL  A     L +V+ LLQ     A ++A +   +T LH         +     
Sbjct: 145 FYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKF 204

Query: 65  VQNNQDL 71
           V +  + 
Sbjct: 205 VTSMYNE 211

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 60.6 bits (147), Expect = 3e-11
 Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 16/76 (21%)

Query: 4   VSVTDDHGFSPLHWACKEGHL---------KLVELLLQRGARVN-------ATNRGDDTP 47
           +S  D  G + LH   +              +   +L  GA+++        TNR   TP
Sbjct: 177 ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTP 236

Query: 48  LHLAAAHGHLDIVRLL 63
           L LAA+ G + ++  +
Sbjct: 237 LALAASSGKIGVLAYI 252

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 50.9 bits (122), Expect = 7e-08
 Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 11/67 (16%)

Query: 8  DDHGFSPLHWACKEGHLKLVELLLQ-------RGARVNATNRGD-DTPLHLAAAH---GH 56
            +    +  A  + + + +E LL        R       +     T L  A  +   G 
Sbjct: 10 RLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQ 69

Query: 57 LDIVRLL 63
           D + LL
Sbjct: 70 NDTIALL 76

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 80.1 bits (199), Expect = 9e-19
 Identities = 13/56 (23%), Positives = 23/56 (41%)

Query: 8  DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
          D +  +PL  AC  G    ++ L++   ++   +    T L  A  +  L I   L
Sbjct: 32 DSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKL 87

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 80.1 bits (199), Expect = 9e-19
 Identities = 21/56 (37%), Positives = 33/56 (58%)

Query: 8   DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           D  G +PL W+   G+ ++   LL+ GA VN  N   +TPL +A+ +G  +IV+ L
Sbjct: 98  DFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKL 153

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 79.7 bits (198), Expect = 1e-18
 Identities = 18/56 (32%), Positives = 27/56 (48%)

Query: 8   DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           D  G + L WA K   L + E LL +G+ VN  +    TPL  +   G+ ++   L
Sbjct: 65  DIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFL 120

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 76.7 bits (190), Expect = 1e-17
 Identities = 15/56 (26%), Positives = 29/56 (51%)

Query: 8   DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           +  G +PL  A K G  ++V+ LL+ GA ++A +    T    A   G  +++++ 
Sbjct: 131 NLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIF 186

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 57.0 bits (139), Expect = 2e-10
 Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 6/56 (10%)

Query: 8  DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
          D +G        ++   + ++ L       N  +  + TPL +A   G  + +  L
Sbjct: 5  DKNGEIVEKIKDEKSINQNLDFL------RNYRDSYNRTPLMVACMLGMENAIDKL 54

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 80.3 bits (199), Expect = 2e-18
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGD-DTPLHLAAAHGHLDIVRL 62
           V   D++G + L +    G  K V LL + GA ++  +     T LH+AA +   ++V  
Sbjct: 70  VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEA 129

Query: 63  L 63
           L
Sbjct: 130 L 130

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 78.8 bits (195), Expect = 7e-18
 Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 4/71 (5%)

Query: 8   DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL---- 63
              G + LH A      ++VE L++ GA +   +    T L LA                
Sbjct: 108 MRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFG 167

Query: 64  AVQNNQDLTKI 74
                + +  +
Sbjct: 168 RRIGLEKVINV 178

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 74.2 bits (183), Expect = 4e-16
 Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 8  DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
               +P   A ++   + +  LL+    V+A +    T L   A  G    VRLL
Sbjct: 42 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLL 96

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 68.4 bits (168), Expect = 4e-14
 Identities = 13/59 (22%), Positives = 16/59 (27%), Gaps = 3/59 (5%)

Query: 5  SVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
          S T   G        K+GH           A V +      TP   AA       +  L
Sbjct: 9  SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYE---TPWWTAARKADEQALSQL 64

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 63.8 bits (156), Expect = 2e-12
 Identities = 8/65 (12%), Positives = 21/65 (32%), Gaps = 3/65 (4%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           + V D+ G + L  A +          +Q G R+          +       + ++  ++
Sbjct: 137 IEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLE---KVINVLEGQVFEYAEVDEIV 193

Query: 64  AVQNN 68
             +  
Sbjct: 194 EKRGK 198

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 49.1 bits (118), Expect = 2e-07
 Identities = 6/50 (12%), Positives = 12/50 (24%), Gaps = 2/50 (4%)

Query: 8   DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHL 57
              G    +    +       +     A   A +   +  L  A A   +
Sbjct: 196 RGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKD--YEDGLEYAVAESVI 243

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 78.8 bits (194), Expect = 6e-18
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
            + TD    + LHWAC  GH ++VE LLQ G  VN  +    +PLH+AA+ G  +IV+ L
Sbjct: 33  ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKAL 92

Query: 64  AVQNNQDLTKINFKDQSWLGLKTRS 88
            +     +  +N    + L      
Sbjct: 93  -LVKGAHVNAVNQNGCTPLHYAASK 116

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 71.8 bits (176), Expect = 2e-15
 Identities = 14/53 (26%), Positives = 22/53 (41%)

Query: 11 GFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
               + A      +L E +L   +    T++   T LH A + GH +IV  L
Sbjct: 7  NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFL 59

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 61.0 bits (148), Expect = 2e-11
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 1/85 (1%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           V+  DD G+SPLH A   G  ++V+ LL +GA VNA N+   TPLH AA+    +I  +L
Sbjct: 66  VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVML 125

Query: 64  AVQNNQDLTKINFKDQSWLGLKTRS 88
            ++   +    +  D + +      
Sbjct: 126 -LEGGANPDAKDHYDATAMHRAAAK 149

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 59.9 bits (145), Expect = 4e-11
 Identities = 18/60 (30%), Positives = 30/60 (50%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
               D +  + +H A  +G+LK+V +LL   A  N  +   +TPLHLA     ++  + L
Sbjct: 132 PDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFL 191

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 59.5 bits (144), Expect = 6e-11
 Identities = 21/60 (35%), Positives = 37/60 (61%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           V+  + +G +PLH+A  +   ++  +LL+ GA  +A +  D T +H AAA G+L +V +L
Sbjct: 99  VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHIL 158

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 59.1 bits (143), Expect = 7e-11
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
            ++ D  G +PLH AC E  ++  + L+ +GA +   N+ + TPL +A   G L ++   
Sbjct: 165 TNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK--GGLGLILKR 222

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 80.4 bits (198), Expect = 7e-18
 Identities = 14/78 (17%), Positives = 26/78 (33%), Gaps = 3/78 (3%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATN--RGDDTPLHLAAAHGHLDIVR 61
           V V     +     A + GHL ++  L +             +     LAA +GHL ++ 
Sbjct: 121 VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLN 180

Query: 62  LLAVQNNQDLTKINFKDQ 79
            L  +          + +
Sbjct: 181 RL-CELAPTEATAMIQAE 197

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 66.9 bits (163), Expect = 3e-13
 Identities = 10/61 (16%), Positives = 19/61 (31%), Gaps = 3/61 (4%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
            +         L  A + G+     LLL   + +  T        ++    G LD+  + 
Sbjct: 312 TATIPGDANELLRLALRLGNQGACALLLSIPSVLALT---KANNYYINETGGRLDLRAVA 368

Query: 64  A 64
            
Sbjct: 369 L 369

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 66.9 bits (163), Expect = 4e-13
 Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 3/59 (5%)

Query: 8   DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRG--DDTPLHLAAA-HGHLDIVRLL 63
               +     A + GHL ++  L +             +      AA   GH +++  L
Sbjct: 160 QAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFL 218

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 63.4 bits (154), Expect = 6e-12
 Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 2/75 (2%)

Query: 7   TDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQ 66
           ++   F      C    L  + LLL     V      +     LAA +GHL ++  L  +
Sbjct: 92  SEVICFVAAITGC-SSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRL-CE 149

Query: 67  NNQDLTKINFKDQSW 81
                     + +++
Sbjct: 150 LAPTEIMAMIQAENY 164

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 60.0 bits (145), Expect = 8e-11
 Identities = 15/78 (19%), Positives = 26/78 (33%), Gaps = 9/78 (11%)

Query: 7   TDDHGFSPLHWACKEGHLKLVELL--------LQRGARVNATNRGDDTPLHLAAAHGHLD 58
               GF  L    +     L++ +        ++  A         +  L LA   G+  
Sbjct: 274 ECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQG 333

Query: 59  IVR-LLAVQNNQDLTKIN 75
               LL++ +   LTK N
Sbjct: 334 ACALLLSIPSVLALTKAN 351

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 49.9 bits (119), Expect = 2e-07
 Identities = 9/63 (14%), Positives = 16/63 (25%), Gaps = 8/63 (12%)

Query: 7   TDDHGFSPLHWACKE-GHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAV 65
                +    WA    GH  ++  LL     +                +G   +   +A 
Sbjct: 194 IQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEI-------HEFEYGEKYVNPFIAR 246

Query: 66  QNN 68
             N
Sbjct: 247 HVN 249

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 80.1 bits (198), Expect = 1e-17
 Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 7/123 (5%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFS 157
           +++ +L L   I  G  GD   G + + + VA K +   + T +    F  E   +    
Sbjct: 190 LNMKELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIK-NDATAQ---AFLAEASVMTQLR 244

Query: 158 HPNVLPVIG-CVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAF 216
           H N++ ++G  V     L ++++YMA GSL   L      V+     L+F++DV   M +
Sbjct: 245 HSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEY 304

Query: 217 LHS 219
           L  
Sbjct: 305 LEG 307

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 77.5 bits (191), Expect = 2e-17
 Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 15/85 (17%)

Query: 8   DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGD--------------DTPLHLAAA 53
              G + LH A +      VELL+++GA V+A  RG               + PL LAA 
Sbjct: 90  YYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAAC 149

Query: 54  HGHLDIVRLLAVQNNQDLTKINFKD 78
                IV  L  +N      +  +D
Sbjct: 150 TNQPHIVHYL-TENGHKQADLRRQD 173

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 56.3 bits (136), Expect = 8e-10
 Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 16/76 (21%)

Query: 4   VSVTDDHGFSPLHWACKEGH---------LKLVELLLQRGARVNATNRGDD-------TP 47
           +   D  G + LH                 K+ +LLL + A++      +        +P
Sbjct: 169 LRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSP 228

Query: 48  LHLAAAHGHLDIVRLL 63
           L +AA  G + I + +
Sbjct: 229 LMMAAKTGKIGIFQHI 244

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 55.6 bits (134), Expect = 2e-09
 Identities = 15/70 (21%), Positives = 22/70 (31%), Gaps = 14/70 (20%)

Query: 8   DDHGFSPLHWA---CKEGHLKLVELLLQRGAR-------VNATNRGDD----TPLHLAAA 53
              G + L  A      G    + +LL    +       +N+  R       T LH+A  
Sbjct: 43  PSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIE 102

Query: 54  HGHLDIVRLL 63
                 V LL
Sbjct: 103 RRCKHYVELL 112

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 54.8 bits (132), Expect = 3e-09
 Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 12/84 (14%)

Query: 12 FSPLHWACKEGHLKLVELLLQRGARVNATNRGDD----TPLHLAAAH---GHLDIVRLL- 63
          F  +     +G   L+  LL    R+      +     T L  A  +   G  D + +L 
Sbjct: 10 FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILL 69

Query: 64 ----AVQNNQDLTKINFKDQSWLG 83
                 N ++     F+D  + G
Sbjct: 70 DIAEKTGNMREFINSPFRDVYYRG 93

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 54.4 bits (131), Expect = 4e-09
 Identities = 12/52 (23%), Positives = 17/52 (32%), Gaps = 3/52 (5%)

Query: 8   DDHGFSPLHWACKEGHLKLVELLLQRG---ARVNATNRGDDTPLHLAAAHGH 56
              G  PL  A       +V  L + G   A +   +   +T LH   A   
Sbjct: 137 FYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIAD 188

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 49.4 bits (118), Expect = 2e-07
 Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 4/45 (8%)

Query: 5   SVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLH 49
           ++ ++ G SPL  A K G + + + +++R     A         H
Sbjct: 219 ALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAA----HHHHH 259

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 79.4 bits (196), Expect = 3e-17
 Identities = 37/177 (20%), Positives = 67/177 (37%), Gaps = 16/177 (9%)

Query: 53  AHGHLDIVRLLAVQNNQDLTKINFKDQSWLGLKTRSRDATLSRHKG---------ISLND 103
            +G   I         Q+L  ++   +   GL  +     +S             I    
Sbjct: 132 DNGGFYISPRSTFSTLQEL--VDHYKKGNDGLCQKLSVPCMSSKPQKPWEKDAWEIPRES 189

Query: 104 LSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFSHPNVL 162
           L L  K+ +G  G+ W   + K+  VA K +   + +      F  E   ++   H  ++
Sbjct: 190 LKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMSVE---AFLAEANVMKTLQHDKLV 246

Query: 163 PVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS 219
            +   V   P + +I+++MA GSL   L    G      + + F+  +A GMAF+  
Sbjct: 247 KLHAVVTKEP-IYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQ 302

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 77.2 bits (191), Expect = 4e-17
 Identities = 31/123 (25%), Positives = 55/123 (44%), Gaps = 7/123 (5%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVS-RDFNEEFPKLRIFS 157
           +++ +L L   I  G  GD   G ++ N +     AV+      + + F  E   +    
Sbjct: 18  LNMKELKLLQTIGKGEFGDVMLGDYRGNKV-----AVKCIKNDATAQAFLAEASVMTQLR 72

Query: 158 HPNVLPVIG-CVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAF 216
           H N++ ++G  V     L ++++YMA GSL   L      V+     L+F++DV   M +
Sbjct: 73  HSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEY 132

Query: 217 LHS 219
           L  
Sbjct: 133 LEG 135

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 75.1 bits (185), Expect = 6e-17
 Identities = 12/89 (13%), Positives = 31/89 (34%), Gaps = 15/89 (16%)

Query: 4   VSVTDDHGFSPLHWACKEGH------LKLVELLLQRGARVNATNRGDDTPLHLAAAHGHL 57
           +      G +      + G        +L ++ L++GA + A  +     +     +  +
Sbjct: 68  IKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFV 127

Query: 58  D------IVRLLAVQNNQDLTKINFKDQS 80
           D      + +L+  Q+      +  KD+ 
Sbjct: 128 DENEMIPLYKLIFSQSGLQ---LLIKDKW 153

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 73.2 bits (180), Expect = 3e-16
 Identities = 8/84 (9%), Positives = 23/84 (27%), Gaps = 11/84 (13%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVE-------LLLQRGARVNATNRGDDTPLHLAAAHGH 56
           ++         +        +   E       +  Q G ++   ++   T L        
Sbjct: 107 ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQK 166

Query: 57  LDIVRLLAVQNNQDLTKINFKDQS 80
              ++++     +     N K+ S
Sbjct: 167 PIALKMM-EDYIKK---YNLKENS 186

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 72.0 bits (177), Expect = 7e-16
 Identities = 10/58 (17%), Positives = 19/58 (32%)

Query: 8  DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAV 65
           +  +  L     E   K+   L+ +GA + +  +   T        G  DI     +
Sbjct: 39 SNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTEL 96

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 57.4 bits (139), Expect = 2e-10
 Identities = 7/56 (12%), Positives = 14/56 (25%), Gaps = 3/56 (5%)

Query: 11 GFSPLHWACKEGHLKLVELLLQRGARVNATNRGDD---TPLHLAAAHGHLDIVRLL 63
           +  +  A   G  +    L ++G     +    +     L          I   L
Sbjct: 6  EYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFL 61

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score = 75.7 bits (187), Expect = 2e-16
 Identities = 25/135 (18%), Positives = 55/135 (40%), Gaps = 7/135 (5%)

Query: 90  DATLSRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKIL-AV----RNCTPRVSR 144
               +  + +   +      + SG  G  ++G W       KI  A+       +P+ ++
Sbjct: 3   APNQALLRILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANK 62

Query: 145 DFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQAL 204
           +  +E   +    +P+V  ++G   +   + +I+Q M +G L   + E     +     L
Sbjct: 63  EILDEAYVMASVDNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREHKD-NIGSQYLL 120

Query: 205 RFAVDVARGMAFLHS 219
            + V +A+GM +L  
Sbjct: 121 NWCVQIAKGMNYLED 135

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 76.7 bits (189), Expect = 2e-16
 Identities = 35/157 (22%), Positives = 60/157 (38%), Gaps = 15/157 (9%)

Query: 74  INFKDQSWLGLKTRSRDATLSRHKG----------ISLNDLSLHTKISSGPNGDTWRGRW 123
           + +  +   GL  R      +              I    L L  K+  G  G+ W G W
Sbjct: 146 VAYYSKHADGLCHRLTTVCPTSKPQTQGLAKDAWEIPRESLRLEVKLGQGCFGEVWMGTW 205

Query: 124 QKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMA 182
                VA K L     +P     F +E   ++   H  ++ +   V+  P + ++++YM+
Sbjct: 206 NGTTRVAIKTLKPGTMSPE---AFLQEAQVMKKLRHEKLVQLYAVVSEEP-IYIVTEYMS 261

Query: 183 WGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS 219
            GSL   L    G  +   Q +  A  +A GMA++  
Sbjct: 262 KGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVER 298

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 76.3 bits (188), Expect = 2e-16
 Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 7/124 (5%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDI-VA-KILAVRNCTPRVSRDFNEEFPKLRIF 156
           +   D+++  K+  G  G+ + G W+K  + VA K L           +F +E   ++  
Sbjct: 217 MERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVE---EFLKEAAVMKEI 273

Query: 157 SHPNVLPVIG-CVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMA 215
            HPN++ ++G C   PP   +I+++M +G+L   L E     V     L  A  ++  M 
Sbjct: 274 KHPNLVQLLGVCTREPP-FYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAME 332

Query: 216 FLHS 219
           +L  
Sbjct: 333 YLEK 336

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score = 75.4 bits (186), Expect = 3e-16
 Identities = 38/135 (28%), Positives = 59/135 (43%), Gaps = 14/135 (10%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKND----IVA-KILAVRNCTPRVSRDFNEEFPKL 153
           I  N L L   +  G  G    G  ++ D     VA K + + N + R   +F  E   +
Sbjct: 31  IDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACM 90

Query: 154 RIFSHPNVLPVIGCV-----NSPPDLVVISQYMAWGSLYALL----HEGAGIVVDFAQAL 204
           + FSHPNV+ ++G          P  +VI  +M +G L+  L     E     +     L
Sbjct: 91  KDFSHPNVIRLLGVCIEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLL 150

Query: 205 RFAVDVARGMAFLHS 219
           +F VD+A GM +L +
Sbjct: 151 KFMVDIALGMEYLSN 165

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score = 74.9 bits (185), Expect = 3e-16
 Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 5/122 (4%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFS 157
           +    L L  ++ +G  G+ W G +  +  VA K L   + +P     F  E   ++   
Sbjct: 10  VPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPD---AFLAEANLMKQLQ 66

Query: 158 HPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
           H  ++ +   V   P  ++  +YM  GSL   L   +GI +   + L  A  +A GMAF+
Sbjct: 67  HQRLVRLYAVVTQEPIYIIT-EYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFI 125

Query: 218 HS 219
             
Sbjct: 126 EE 127

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 75.7 bits (186), Expect = 5e-16
 Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 5/122 (4%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFS 157
           I    L L  K+  G  G+ W G W     VA K L     +P     F +E   ++   
Sbjct: 264 IPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPE---AFLQEAQVMKKLR 320

Query: 158 HPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
           H  ++ +   V+  P + ++++YM+ GSL   L    G  +   Q +  A  +A GMA++
Sbjct: 321 HEKLVQLYAVVSEEP-IYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYV 379

Query: 218 HS 219
             
Sbjct: 380 ER 381

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score = 73.4 bits (181), Expect = 1e-15
 Identities = 31/123 (25%), Positives = 58/123 (47%), Gaps = 5/123 (4%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDI-VA-KILAVRNCTPRVSRDFNEEFPKLRIF 156
           +   D+++  K+  G  G+ + G W+K  + VA K L  +  T  V  +F +E   ++  
Sbjct: 10  MERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTL--KEDTMEVE-EFLKEAAVMKEI 66

Query: 157 SHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAF 216
            HPN++ ++G     P   +I+++M +G+L   L E     V     L  A  ++  M +
Sbjct: 67  KHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEY 126

Query: 217 LHS 219
           L  
Sbjct: 127 LEK 129

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327

 Score = 73.5 bits (181), Expect = 1e-15
 Identities = 25/135 (18%), Positives = 55/135 (40%), Gaps = 7/135 (5%)

Query: 90  DATLSRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKIL-AV----RNCTPRVSR 144
               +  + +   +      + SG  G  ++G W       KI  A+       +P+ ++
Sbjct: 3   APNQALLRILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANK 62

Query: 145 DFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQAL 204
           +  +E   +    +P+V  ++G   +   + +I+Q M +G L   + E     +     L
Sbjct: 63  EILDEAYVMASVDNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREHKD-NIGSQYLL 120

Query: 205 RFAVDVARGMAFLHS 219
            + V +A+GM +L  
Sbjct: 121 NWCVQIAKGMNYLED 135

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 71.9 bits (177), Expect = 2e-15
 Identities = 24/69 (34%), Positives = 29/69 (42%), Gaps = 13/69 (18%)

Query: 8   DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDD-------------TPLHLAAAH 54
              G + LH A    ++ LV  LL RGA V+A   G                PL  AA  
Sbjct: 72  LYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACV 131

Query: 55  GHLDIVRLL 63
           G  +IVRLL
Sbjct: 132 GSEEIVRLL 140

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 71.5 bits (176), Expect = 3e-15
 Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 4  VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARV-----NATNRGDDTPLHLAAAHGHLD 58
          V      G + LH A    +L+   +L++    +      +      T LH+A  + +++
Sbjct: 30 VHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVN 89

Query: 59 IVRLL 63
          +VR L
Sbjct: 90 LVRAL 94

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 71.1 bits (175), Expect = 4e-15
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 11 GFSPLHWACKEGHLKLV-ELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
            SPL  A KE  ++ + +LL   G  V+      +T LH+AA + +L+   +L
Sbjct: 3  WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVL 56

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 66.9 bits (164), Expect = 1e-13
 Identities = 14/56 (25%), Positives = 26/56 (46%)

Query: 8   DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
             +G  PL +A   G  ++V LL++ GA + A +   +T LH+     +      +
Sbjct: 118 IYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQM 173

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 63.8 bits (156), Expect = 2e-12
 Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 10/70 (14%)

Query: 4   VSVTDDHGFSPLHWACKEGH----LKLVELLLQRGARVNATNRGDD------TPLHLAAA 53
           +   D  G + LH    + +     ++  LLL      +  +          TP  LA  
Sbjct: 147 IRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGV 206

Query: 54  HGHLDIVRLL 63
            G++ + + L
Sbjct: 207 EGNIVMFQHL 216

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325

 Score = 72.7 bits (179), Expect = 2e-15
 Identities = 23/126 (18%), Positives = 47/126 (37%), Gaps = 7/126 (5%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKIL-AV----RNCTPRVSRDFNEEFPKL 153
               +L     + SG  G   +G W       KI   +         +  +   +    +
Sbjct: 10  FKETELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAI 69

Query: 154 RIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARG 213
               H +++ ++G       L +++QY+  GSL   + +  G  +     L + V +A+G
Sbjct: 70  GSLDHAHIVRLLGLCPGSS-LQLVTQYLPLGSLLDHVRQHRG-ALGPQLLLNWGVQIAKG 127

Query: 214 MAFLHS 219
           M +L  
Sbjct: 128 MYYLEE 133

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score = 72.0 bits (177), Expect = 4e-15
 Identities = 33/136 (24%), Positives = 52/136 (38%), Gaps = 15/136 (11%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKND----IVA-KILAVRNCTPRVSRDFNEEFPKL 153
           I     +L   +  G  G     + ++ D     VA K+L           +F  E   +
Sbjct: 20  IPEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACM 79

Query: 154 RIFSHPNVLPVIGCV------NSPPDLVVISQYMAWGSLYALL----HEGAGIVVDFAQA 203
           + F HP+V  ++G           P  +VI  +M  G L+A L           +     
Sbjct: 80  KEFDHPHVAKLVGVSLRSRAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTL 139

Query: 204 LRFAVDVARGMAFLHS 219
           +RF VD+A GM +L S
Sbjct: 140 VRFMVDIACGMEYLSS 155

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score = 71.5 bits (176), Expect = 6e-15
 Identities = 34/126 (26%), Positives = 49/126 (38%), Gaps = 6/126 (4%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAV----RNCTPRVSRDFNEEFPKLR 154
            S   +  +  I  G  G  + G    ND      AV    R         F  E   ++
Sbjct: 22  PSSLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMK 81

Query: 155 IFSHPNVLPVIG-CVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARG 213
            FSHPNVL ++G C+ S    +V+  YM  G L   +             + F + VA+G
Sbjct: 82  DFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETH-NPTVKDLIGFGLQVAKG 140

Query: 214 MAFLHS 219
           M +L S
Sbjct: 141 MKYLAS 146

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score = 72.1 bits (177), Expect = 6e-15
 Identities = 35/126 (27%), Positives = 49/126 (38%), Gaps = 6/126 (4%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAV----RNCTPRVSRDFNEEFPKLR 154
            S   +  +  I  G  G  + G    ND      AV    R         F  E   ++
Sbjct: 86  PSSLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMK 145

Query: 155 IFSHPNVLPVIG-CVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARG 213
            FSHPNVL ++G C+ S    +V+  YM  G L   +             + F + VA+G
Sbjct: 146 DFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETH-NPTVKDLIGFGLQVAKG 204

Query: 214 MAFLHS 219
           M FL S
Sbjct: 205 MKFLAS 210

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 70.8 bits (173), Expect = 1e-14
 Identities = 19/78 (24%), Positives = 28/78 (35%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           +      G + LH+A        ++LLL+  A V   N   +T L +A    H +   LL
Sbjct: 219 LDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELL 278

Query: 64  AVQNNQDLTKINFKDQSW 81
                         D SW
Sbjct: 279 EQAQAGTFAFPLHVDYSW 296

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 57.3 bits (138), Expect = 5e-10
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 4/74 (5%)

Query: 5   SVTDDHGFSPLHWAC---KEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVR 61
                     LH A     +  L LV+ ++Q G  ++A     +T LH AA +   D ++
Sbjct: 184 PDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLK 243

Query: 62  LLAVQNNQDLTKIN 75
           LL ++    +  +N
Sbjct: 244 LL-LKGRALVGTVN 256

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298

 Score = 70.8 bits (174), Expect = 1e-14
 Identities = 30/141 (21%), Positives = 46/141 (32%), Gaps = 10/141 (7%)

Query: 84  LKTRSRDATLSRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAV----RNCT 139
           L    +D  +   +            I  G  G  + G +          A+    R   
Sbjct: 7   LLAEVKDVLIPHER----VVTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITE 62

Query: 140 PRVSRDFNEEFPKLRIFSHPNVLPVIG-CVNSPPDLVVISQYMAWGSLYALLHEGAGIVV 198
            +    F  E   +R  +HPNVL +IG  +       V+  YM  G L   +        
Sbjct: 63  MQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPHVLLPYMCHGDLLQFIRS-PQRNP 121

Query: 199 DFAQALRFAVDVARGMAFLHS 219
                + F + VARGM +L  
Sbjct: 122 TVKDLISFGLQVARGMEYLAE 142

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 70.8 bits (173), Expect = 1e-14
 Identities = 14/50 (28%), Positives = 26/50 (52%)

Query: 7   TDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGH 56
            D+HG +PLHW     +L+LV+ L++ G+     +   ++ L  A    +
Sbjct: 127 VDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVN 176

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 66.6 bits (162), Expect = 4e-13
 Identities = 13/49 (26%), Positives = 25/49 (51%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAA 52
           ++  D +G + L+ A + G++ +V+ LL  GA     N+    P+   A
Sbjct: 276 LNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 49.6 bits (118), Expect = 2e-07
 Identities = 14/56 (25%), Positives = 27/56 (48%)

Query: 8   DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
            +   +  +   K+  L+ ++L       +NA +   DT L++AA  G++ IV  L
Sbjct: 247 KESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDAL 302

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 46.9 bits (111), Expect = 2e-06
 Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 16/93 (17%)

Query: 4   VSVTDDHGFSPLHWACKEGHLK----LVELLLQRGARVNATNRGDDTPLHLAA------- 52
               D+ G S L  A K  +         LL      +   +  + T LH          
Sbjct: 157 RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTG 216

Query: 53  ----AHGHLD-IVRLLAVQNNQDLTKINFKDQS 80
               A  +LD ++  +  + N+ +     + +S
Sbjct: 217 CSAAAKYYLDILMGWIVKKQNRPIQSGTNEKES 249

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 43.1 bits (101), Expect = 4e-05
 Identities = 8/88 (9%), Positives = 22/88 (25%), Gaps = 12/88 (13%)

Query: 4   VSVTDDHGFSPLHWACKEGHLK------------LVELLLQRGARVNATNRGDDTPLHLA 51
           + + D    + LH       +             L+  ++++  R   +   +       
Sbjct: 194 LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPND 253

Query: 52  AAHGHLDIVRLLAVQNNQDLTKINFKDQ 79
                 D +             +N +D 
Sbjct: 254 KNGERKDSILENLDLKWIIANMLNAQDS 281

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 69.9 bits (172), Expect = 2e-14
 Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 7/121 (5%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFS 157
           I  ++L+   +I SG  G    G W   D VA K +  R        DF EE   +   S
Sbjct: 5   IDPSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTI--REGAMSEE-DFIEEAEVMMKLS 61

Query: 158 HPNVLPVIG-CVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAF 216
           HP ++ + G C+   P + +++++M  G L   L    G +      L   +DV  GMA+
Sbjct: 62  HPKLVQLYGVCLEQAP-ICLVTEFMEHGCLSDYLRTQRG-LFAAETLLGMCLDVCEGMAY 119

Query: 217 L 217
           L
Sbjct: 120 L 120

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 70.7 bits (174), Expect = 2e-14
 Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 6/124 (4%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDI-VA-KILAVRNCTPRVSRDFNEEFPKLRIF 156
           ++  DL L  +I  G  G+ + GR + ++  VA K        P +   F +E   L+ +
Sbjct: 111 LNHEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCR-ETLPPDLKAKFLQEARILKQY 169

Query: 157 SHPNVLPVIG-CVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMA 215
           SHPN++ +IG C    P  +V+ + +  G     L    G  +     L+   D A GM 
Sbjct: 170 SHPNIVRLIGVCTQKQPIYIVM-ELVQGGDFLTFLRTE-GARLRVKTLLQMVGDAAAGME 227

Query: 216 FLHS 219
           +L S
Sbjct: 228 YLES 231

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 69.6 bits (170), Expect = 3e-14
 Identities = 16/60 (26%), Positives = 27/60 (45%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           +      G + LH+ C   + + ++LLL+  A +   N   +TPL +A    H     LL
Sbjct: 198 LDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELL 257

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 55.8 bits (134), Expect = 2e-09
 Identities = 13/74 (17%), Positives = 29/74 (39%), Gaps = 4/74 (5%)

Query: 5   SVTDDHGFSPLHWACKEG---HLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVR 61
           +   +   + LH A +      L +V+ L+Q    ++       T LH      + + ++
Sbjct: 163 ANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLK 222

Query: 62  LLAVQNNQDLTKIN 75
           LL ++    +   N
Sbjct: 223 LL-LRGKASIEIAN 235

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 69.7 bits (171), Expect = 3e-14
 Identities = 37/157 (23%), Positives = 61/157 (38%), Gaps = 16/157 (10%)

Query: 71  LTKINFKDQSWLGLKTRSRDATLSRHKGISLNDLSLHTKISSGPNGDTWRGRW-----QK 125
            T  N   Q  +G     RD T           L    ++  G  G     R+       
Sbjct: 15  PTTENLYFQGAMGSAFEDRDPTQ-----FEERHLKFLQQLGKGNFGSVEMCRYDPLQDNT 69

Query: 126 NDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPD--LVVISQYMA 182
            ++VA K L  ++ T    RDF  E   L+   H N++   G   S     L +I +Y+ 
Sbjct: 70  GEVVAVKKL--QHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLP 127

Query: 183 WGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS 219
           +GSL   L +     +D  + L++   + +GM +L +
Sbjct: 128 YGSLRDYLQKHKE-RIDHIKLLQYTSQICKGMEYLGT 163

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 69.2 bits (170), Expect = 3e-14
 Identities = 30/129 (23%), Positives = 53/129 (41%), Gaps = 11/129 (8%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRW-----QKNDIVA-KILAVRNCTPRVSRDFNEEFPK 152
                L    ++  G  G     R+        ++VA K L  ++ T    RDF  E   
Sbjct: 7   FEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKL--QHSTEEHLRDFEREIEI 64

Query: 153 LRIFSHPNVLPVIGCVNSPPD--LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDV 210
           L+   H N++   G   S     L +I +Y+ +GSL   L +     +D  + L++   +
Sbjct: 65  LKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKE-RIDHIKLLQYTSQI 123

Query: 211 ARGMAFLHS 219
            +GM +L +
Sbjct: 124 CKGMEYLGT 132

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score = 68.1 bits (167), Expect = 1e-13
 Identities = 26/128 (20%), Positives = 44/128 (34%), Gaps = 8/128 (6%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKIL-AV----RNCTPRVSRDFNEEFPKL 153
                L     +  G  G     R+           AV             D  +E   L
Sbjct: 18  FEKRFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEIL 77

Query: 154 RIFSHPNVLPVIGCVNSPPD--LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVA 211
           R   H N++   G         + +I +++  GSL   L +     ++  Q L++AV + 
Sbjct: 78  RNLYHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPKNKN-KINLKQQLKYAVQIC 136

Query: 212 RGMAFLHS 219
           +GM +L S
Sbjct: 137 KGMDYLGS 144

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score = 67.7 bits (166), Expect = 1e-13
 Identities = 27/129 (20%), Positives = 49/129 (37%), Gaps = 14/129 (10%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDI--------VA-KILAVRNCTPRVSRDFNEE 149
           I   DL  +  +  G     ++G  ++           V  K+L         S  F E 
Sbjct: 5   IRNEDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVL--DKAHRNYSESFFEA 62

Query: 150 FPKLRIFSHPNVLPVIG-CVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAV 208
              +   SH +++   G CV    +++V  +++ +GSL   L +     ++    L  A 
Sbjct: 63  ASMMSKLSHKHLVLNYGVCVCGDENILVQ-EFVKFGSLDTYLKKNKN-CINILWKLEVAK 120

Query: 209 DVARGMAFL 217
            +A  M FL
Sbjct: 121 QLAAAMHFL 129

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score = 67.2 bits (165), Expect = 2e-13
 Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 7/121 (5%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFS 157
           I   DL+   ++ +G  G    G+W+    VA K++  +  +     +F EE   +   S
Sbjct: 21  IDPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMI--KEGSMSED-EFIEEAKVMMNLS 77

Query: 158 HPNVLPVIG-CVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAF 216
           H  ++ + G C    P + +I++YMA G L   L E         Q L    DV   M +
Sbjct: 78  HEKLVQLYGVCTKQRP-IFIITEYMANGCLLNYLREMRH-RFQTQQLLEMCKDVCEAMEY 135

Query: 217 L 217
           L
Sbjct: 136 L 136

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281

 Score = 66.9 bits (164), Expect = 2e-13
 Identities = 28/125 (22%), Positives = 55/125 (44%), Gaps = 6/125 (4%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVR----NCTPRVSRDFNEEFPKLR 154
           I    + L   I  G  GD  +G +   +  A  +A++      +  V   F +E   +R
Sbjct: 12  IQRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMR 71

Query: 155 IFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGM 214
            F HP+++ +IG +   P  +++ +    G L + L       +D A  + +A  ++  +
Sbjct: 72  QFDHPHIVKLIGVITENPVWIIM-ELCTLGELRSFLQVRKY-SLDLASLILYAYQLSTAL 129

Query: 215 AFLHS 219
           A+L S
Sbjct: 130 AYLES 134

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 67.4 bits (165), Expect = 2e-13
 Identities = 27/129 (20%), Positives = 49/129 (37%), Gaps = 11/129 (8%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRW-----QKNDIVA-KILAVRNCTPRVSRDFNEEFPK 152
                L   +++  G  G     R+         +VA K L  ++  P   RDF  E   
Sbjct: 20  FEERHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQL--QHSGPDQQRDFQREIQI 77

Query: 153 LRIFSHPNVLPVIGCVNSPPD--LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDV 210
           L+      ++   G    P    L ++ +Y+  G L   L       +D ++ L ++  +
Sbjct: 78  LKALHSDFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQRHRA-RLDASRLLLYSSQI 136

Query: 211 ARGMAFLHS 219
            +GM +L S
Sbjct: 137 CKGMEYLGS 145

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325

 Score = 66.9 bits (164), Expect = 3e-13
 Identities = 34/135 (25%), Positives = 53/135 (39%), Gaps = 7/135 (5%)

Query: 90  DATLSRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVR----NCTPRVSRD 145
            A  S  + I  + + +   I SG +G+   GR +        +A++      T R  RD
Sbjct: 37  RAGRSFTREIEASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRD 96

Query: 146 FNEEFPKLRIFSHPNVLPVIG-CVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQAL 204
           F  E   +  F HPN++ + G        ++V  +YM  GSL   L    G      Q +
Sbjct: 97  FLSEASIMGQFDHPNIIRLEGVVTRGRLAMIVT-EYMENGSLDTFLRTHDG-QFTIMQLV 154

Query: 205 RFAVDVARGMAFLHS 219
                V  GM +L  
Sbjct: 155 GMLRGVGAGMRYLSD 169

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333

 Score = 66.6 bits (163), Expect = 3e-13
 Identities = 30/135 (22%), Positives = 57/135 (42%), Gaps = 8/135 (5%)

Query: 91  ATLSRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKIL-AVR----NCTPRVSRD 145
           A L     I  + ++    I +G  G+ ++G  + +    ++  A++      T +   D
Sbjct: 33  AVLKFTTEIHPSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVD 92

Query: 146 FNEEFPKLRIFSHPNVLPVIG-CVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQAL 204
           F  E   +  FSH N++ + G      P +++  +YM  G+L   L E  G      Q +
Sbjct: 93  FLGEAGIMGQFSHHNIIRLEGVISKYKPMMIIT-EYMENGALDKFLREKDG-EFSVLQLV 150

Query: 205 RFAVDVARGMAFLHS 219
                +A GM +L +
Sbjct: 151 GMLRGIAAGMKYLAN 165

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656

 Score = 67.2 bits (164), Expect = 5e-13
 Identities = 29/125 (23%), Positives = 55/125 (44%), Gaps = 6/125 (4%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVR----NCTPRVSRDFNEEFPKLR 154
           I    + L   I  G  GD  +G +   +  A  +A++      +  V   F +E   +R
Sbjct: 387 IQRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMR 446

Query: 155 IFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGM 214
            F HP+++ +IG +   P + +I +    G L + L       +D A  + +A  ++  +
Sbjct: 447 QFDHPHIVKLIGVITENP-VWIIMELCTLGELRSFLQVRKF-SLDLASLILYAYQLSTAL 504

Query: 215 AFLHS 219
           A+L S
Sbjct: 505 AYLES 509

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281

 Score = 65.7 bits (161), Expect = 5e-13
 Identities = 24/125 (19%), Positives = 55/125 (44%), Gaps = 6/125 (4%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAV----RNCTPRVSRDFNEEFPKLR 154
           I+  D+ L+  +  G  G+ + G +  +      +AV    ++CT      F  E   ++
Sbjct: 9   IAREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMK 68

Query: 155 IFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGM 214
              HP+++ +IG +   P  +++ +   +G L   L       +     + +++ + + M
Sbjct: 69  NLDHPHIVKLIGIIEEEPTWIIM-ELYPYGELGHYLERNKN-SLKVLTLVLYSLQICKAM 126

Query: 215 AFLHS 219
           A+L S
Sbjct: 127 AYLES 131

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291

 Score = 65.7 bits (161), Expect = 5e-13
 Identities = 37/127 (29%), Positives = 52/127 (40%), Gaps = 8/127 (6%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDI----VA-KILAVRNCTP-RVSRDFNEEFPK 152
           I   DL L  K+  G  G   RG W         VA K L     +      DF  E   
Sbjct: 15  IGEKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNA 74

Query: 153 LRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVAR 212
           +    H N++ + G V +PP + ++++    GSL   L +  G         R+AV VA 
Sbjct: 75  MHSLDHRNLIRLYGVVLTPP-MKMVTELAPLGSLLDRLRKHQG-HFLLGTLSRYAVQVAE 132

Query: 213 GMAFLHS 219
           GM +L S
Sbjct: 133 GMGYLES 139

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291

 Score = 65.7 bits (161), Expect = 7e-13
 Identities = 25/124 (20%), Positives = 49/124 (39%), Gaps = 8/124 (6%)

Query: 99  ISLNDLSLHTK-ISSGPNGDTWRGRWQKNDI---VA-KILAVRNCTPRVSRDFNEEFPKL 153
           +    L+L  K + SG  G   +G +Q   +   VA KIL      P +  +   E   +
Sbjct: 13  LDRKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVM 72

Query: 154 RIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARG 213
           +   +P ++ +IG   +    +++ +    G L   L +   +       +     V+ G
Sbjct: 73  QQLDNPYIVRMIGICEAES-WMLVMEMAELGPLNKYLQQNRHVKD--KNIIELVHQVSMG 129

Query: 214 MAFL 217
           M +L
Sbjct: 130 MKYL 133

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373

 Score = 65.8 bits (161), Expect = 7e-13
 Identities = 35/127 (27%), Positives = 56/127 (44%), Gaps = 9/127 (7%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQ----KNDIVA-KILAVRNCTPRVSRDFNEEFPKL 153
           +   ++S+   + +G  G+   GR +    K   VA K L V   T +  RDF  E   +
Sbjct: 42  LDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKV-GYTEKQRRDFLGEASIM 100

Query: 154 RIFSHPNVLPVIG-CVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVAR 212
             F HPN++ + G    S P ++V  +YM  GSL + L +         Q +     +A 
Sbjct: 101 GQFDHPNIIRLEGVVTKSKPVMIVT-EYMENGSLDSFLRKHDA-QFTVIQLVGMLRGIAS 158

Query: 213 GMAFLHS 219
           GM +L  
Sbjct: 159 GMKYLSD 165

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score = 65.3 bits (160), Expect = 8e-13
 Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 7/123 (5%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFS 157
           +   +++L  ++ SG  G    G+W+    VA K++  +  +     +F +E   +   S
Sbjct: 5   LKREEITLLKELGSGQFGVVKLGKWKGQYDVAVKMI--KEGSMSE-DEFFQEAQTMMKLS 61

Query: 158 HPNVLPVIG-CVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAF 216
           HP ++   G C    P  +V  +Y++ G L   L    G  ++ +Q L    DV  GMAF
Sbjct: 62  HPKLVKFYGVCSKEYPIYIVT-EYISNGCLLNYLRSH-GKGLEPSQLLEMCYDVCEGMAF 119

Query: 217 LHS 219
           L S
Sbjct: 120 LES 122

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 65.1 bits (159), Expect = 1e-12
 Identities = 28/128 (21%), Positives = 48/128 (37%), Gaps = 10/128 (7%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKIL-AV----RNCTPRVSRDFNEEFPKL 153
                L     +  G  G      +   +     + AV     +  P+    + +E   L
Sbjct: 28  FHKRYLKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDIL 87

Query: 154 RIFSHPNVLPVIGCVNSPPD--LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVA 211
           R   H +++   GC        L ++ +Y+  GSL   L   +   +  AQ L FA  + 
Sbjct: 88  RTLYHEHIIKYKGCCEDAGAASLQLVMEYVPLGSLRDYLPRHS---IGLAQLLLFAQQIC 144

Query: 212 RGMAFLHS 219
            GMA+LH+
Sbjct: 145 EGMAYLHA 152

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score = 64.2 bits (157), Expect = 3e-12
 Identities = 23/139 (16%), Positives = 57/139 (41%), Gaps = 14/139 (10%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAV------RNCTPRVSRDFNEEFPK 152
           ++   +++  ++  G  G  + G  +          V         + R   +F  E   
Sbjct: 22  VAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASV 81

Query: 153 LRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALL--------HEGAGIVVDFAQAL 204
           ++ F+  +V+ ++G V+     +VI + M  G L + L        +         ++ +
Sbjct: 82  MKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMI 141

Query: 205 RFAVDVARGMAFLHSLERI 223
           + A ++A GMA+L++ + +
Sbjct: 142 QMAGEIADGMAYLNANKFV 160

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327

 Score = 63.5 bits (155), Expect = 4e-12
 Identities = 26/132 (19%), Positives = 47/132 (35%), Gaps = 11/132 (8%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAV------RNCTPRVSRDFNEEFPK 152
           +   +++L   +  G  G+ + G+          L V        C+ +   DF  E   
Sbjct: 27  VPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALI 86

Query: 153 LRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALL-----HEGAGIVVDFAQALRFA 207
           +  F+H N++  IG         ++ + MA G L + L            +     L  A
Sbjct: 87  ISKFNHQNIVRCIGVSLQSLPRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVA 146

Query: 208 VDVARGMAFLHS 219
            D+A G  +L  
Sbjct: 147 RDIACGCQYLEE 158

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367

 Score = 63.6 bits (155), Expect = 4e-12
 Identities = 28/133 (21%), Positives = 51/133 (38%), Gaps = 13/133 (9%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAV------RNCTPRVSRDFNEEFPK 152
           +   +++L   +  G  G+ + G+          L V        C+ +   DF  E   
Sbjct: 68  VPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALI 127

Query: 153 LRIFSHPNVLPVIG-CVNSPPDLVVISQYMAWGSLYALL-----HEGAGIVVDFAQALRF 206
           +  F+H N++  IG  + S P  +++ + MA G L + L            +     L  
Sbjct: 128 ISKFNHQNIVRCIGVSLQSLPRFILL-ELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHV 186

Query: 207 AVDVARGMAFLHS 219
           A D+A G  +L  
Sbjct: 187 ARDIACGCQYLEE 199

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 62.9 bits (152), Expect = 1e-11
 Identities = 24/72 (33%), Positives = 33/72 (45%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           V+  D  G  PLH A   GH  L  L L+RGA + A +     PL +A    + DIV LL
Sbjct: 261 VNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320

Query: 64  AVQNNQDLTKIN 75
            +   ++     
Sbjct: 321 RLAKMREAEAAQ 332

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 59.4 bits (143), Expect = 1e-10
 Identities = 19/59 (32%), Positives = 22/59 (37%)

Query: 5   SVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
                   +PL  A     L   E LLQ GA VN  +     PLH A   GH  +  L 
Sbjct: 229 VNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLF 287

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score = 61.2 bits (149), Expect = 3e-11
 Identities = 35/143 (24%), Positives = 52/143 (36%), Gaps = 24/143 (16%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRW------QKNDIVA-KILAVRNCTPRVSRDFNEEFP 151
           I   D+ L  ++  G  G  +          Q   +VA K L  +  +    +DF  E  
Sbjct: 38  IKRRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKAL--KEASESARQDFQREAE 95

Query: 152 KLRIFSHPNVLPVIG-CVNSPPDLVVISQYMAWGSLYALL-------------HEGAGIV 197
            L +  H +++   G C    P L+V  +YM  G L   L              + A   
Sbjct: 96  LLTMLQHQHIVRFFGVCTEGRPLLMVF-EYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGP 154

Query: 198 VDFAQALRFAVDVARGMAFLHSL 220
           +   Q L  A  VA GM +L  L
Sbjct: 155 LGLGQLLAVASQVAAGMVYLAGL 177

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 61.1 bits (149), Expect = 3e-11
 Identities = 32/140 (22%), Positives = 52/140 (37%), Gaps = 20/140 (14%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAV----RNCTPRVSRDFNEEFPKL- 153
           +  ND+     I  G  G   + R +K+ +     A+       +    RDF  E   L 
Sbjct: 22  LDWNDIKFQDVIGEGNFGQVLKARIKKDGLRMDA-AIKRMKEYASKDDHRDFAGELEVLC 80

Query: 154 RIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSL--------------YALLHEGAGIVVD 199
           ++  HPN++ ++G       L +  +Y   G+L                 +       + 
Sbjct: 81  KLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLS 140

Query: 200 FAQALRFAVDVARGMAFLHS 219
             Q L FA DVARGM +L  
Sbjct: 141 SQQLLHFAADVARGMDYLSQ 160

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287

 Score = 60.7 bits (148), Expect = 3e-11
 Identities = 20/124 (16%), Positives = 47/124 (37%), Gaps = 8/124 (6%)

Query: 99  ISLNDLSL-HTKISSGPNGDTWRGRWQKND---IVA-KILAVRNCTPRVSRDFNEEFPKL 153
           +  ++L +   ++  G  G   +G ++       VA K+L         + +   E   +
Sbjct: 6   LKRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQ-GTEKADTEEMMREAQIM 64

Query: 154 RIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARG 213
               +P ++ +IG   +   L+++ +    G L+  L       +  +        V+ G
Sbjct: 65  HQLDNPYIVRLIGVCQAEA-LMLVMEMAGGGPLHKFLVGKRE-EIPVSNVAELLHQVSMG 122

Query: 214 MAFL 217
           M +L
Sbjct: 123 MKYL 126

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 60.7 bits (147), Expect = 6e-11
 Identities = 23/120 (19%), Positives = 46/120 (38%), Gaps = 7/120 (5%)

Query: 102 NDLSLHTKISSGPNGDTWRGRW--QKNDI-VA-KILAVRNCTPRVSRDFNEEFPKLRIFS 157
           N L    ++  G  G   +G +  +K  I VA K+L         + +   E   +    
Sbjct: 336 NLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQ-GTEKADTEEMMREAQIMHQLD 394

Query: 158 HPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
           +P ++ +IG   +   L+++ +    G L+  L       +  +        V+ GM +L
Sbjct: 395 NPYIVRLIGVCQAEA-LMLVMEMAGGGPLHKFLVGKRE-EIPVSNVAELLHQVSMGMKYL 452

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score = 59.9 bits (146), Expect = 6e-11
 Identities = 33/144 (22%), Positives = 54/144 (37%), Gaps = 25/144 (17%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRW------QKNDIVA-KILAVRNCTPRVSRDFNEEFP 151
           I   D+ L  ++  G  G  +          +   +VA K L  ++ T    +DF  E  
Sbjct: 12  IKRRDIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKAL--KDPTLAARKDFQREAE 69

Query: 152 KLRIFSHPNVLPVIG-CVNSPPDLVVISQYMAWGSLYALL--------------HEGAGI 196
            L    H +++   G C +  P L+++ +YM  G L   L                 A  
Sbjct: 70  LLTNLQHEHIVKFYGVCGDGDP-LIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKG 128

Query: 197 VVDFAQALRFAVDVARGMAFLHSL 220
            +  +Q L  A  +A GM +L S 
Sbjct: 129 ELGLSQMLHIASQIASGMVYLASQ 152

>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289

 Score = 59.9 bits (146), Expect = 6e-11
 Identities = 28/143 (19%), Positives = 49/143 (34%), Gaps = 24/143 (16%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRW------QKNDIVA-KILAVRNCTPRVSRDFNEEFP 151
           ISL+ +    ++     G  ++G        ++   VA K L        +  +F  E  
Sbjct: 6   ISLSAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKD-KAEGPLREEFRHEAM 64

Query: 152 KLRIFSHPNVLPVIG-CVNSPPDLVVISQYMAWGSLYALLHE--------------GAGI 196
                 HPNV+ ++G      P L +I  Y + G L+  L                    
Sbjct: 65  LRARLQHPNVVCLLGVVTKDQP-LSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKS 123

Query: 197 VVDFAQALRFAVDVARGMAFLHS 219
            ++    +     +A GM +L S
Sbjct: 124 ALEPPDFVHLVAQIAAGMEYLSS 146

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343

 Score = 58.1 bits (141), Expect = 4e-10
 Identities = 30/151 (19%), Positives = 50/151 (33%), Gaps = 30/151 (19%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAV------RNCTPRVSRDFNEEFPK 152
              N++     I  G  G  ++ R            V         +  +  DF  E   
Sbjct: 44  YPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAAL 103

Query: 153 LRIFSHPNVLPVIG-CVNSPPDLVVISQYMAWGSLYALL--------------------- 190
           +  F +PN++ ++G C    P + ++ +YMA+G L   L                     
Sbjct: 104 MAEFDNPNIVKLLGVCAVGKP-MCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRAR 162

Query: 191 -HEGAGIVVDFAQALRFAVDVARGMAFLHSL 220
                   +  A+ L  A  VA GMA+L   
Sbjct: 163 VSSPGPPPLSCAEQLCIARQVAAGMAYLSER 193

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314

 Score = 57.2 bits (139), Expect = 6e-10
 Identities = 29/149 (19%), Positives = 50/149 (33%), Gaps = 28/149 (18%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAV------RNCTPRVSRDFNEEFPK 152
               +L L   +  G  G   +         A    V       N +P   RD   EF  
Sbjct: 20  FPRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNV 79

Query: 153 LRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSL----------------------YALL 190
           L+  +HP+V+ + G  +    L++I +Y  +GSL                       + L
Sbjct: 80  LKQVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSL 139

Query: 191 HEGAGIVVDFAQALRFAVDVARGMAFLHS 219
                  +     + FA  +++GM +L  
Sbjct: 140 DHPDERALTMGDLISFAWQISQGMQYLAE 168

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316

 Score = 56.5 bits (137), Expect = 1e-09
 Identities = 30/144 (20%), Positives = 46/144 (31%), Gaps = 24/144 (16%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAV------RNCTPRVSRDFNEEFPK 152
              + L L   +  G  G          D  A    V         T    R    E   
Sbjct: 24  FPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKI 83

Query: 153 L-RIFSHPNVLPVIGCV--NSPPDLVVISQYMAWGSLYALL--------------HEGAG 195
           L  I  H NV+ ++G       P L+VI ++  +G+L   L               +   
Sbjct: 84  LIHIGHHLNVVNLLGACTKPGGP-LMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYK 142

Query: 196 IVVDFAQALRFAVDVARGMAFLHS 219
             +     + ++  VA+GM FL S
Sbjct: 143 DFLTLEHLICYSFQVAKGMEFLAS 166

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 54.5 bits (131), Expect = 7e-09
 Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 4/85 (4%)

Query: 8   DDHGFSPLHWACK---EGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLA 64
                  LH A K   +  L LV+ ++Q G  ++A     +T LH AA +   D ++LL 
Sbjct: 168 QAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLL- 226

Query: 65  VQNNQDLTKINFKDQSWLGLKTRSR 89
           ++    +  +N   ++ L +  +  
Sbjct: 227 LKGRALVGTVNEAGETALDIARKKH 251

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313

 Score = 54.2 bits (131), Expect = 6e-09
 Identities = 30/144 (20%), Positives = 49/144 (34%), Gaps = 23/144 (15%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAV----RNCTPRVSRDFNEEFPK 152
              N LS    + +G  G               A  +AV     +           E   
Sbjct: 20  FPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKV 79

Query: 153 L-RIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSL----------------YALLHEGAG 195
           L  + +H N++ ++G        +VI++Y  +G L                   + E   
Sbjct: 80  LSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDE 139

Query: 196 IVVDFAQALRFAVDVARGMAFLHS 219
           + +D    L F+  VA+GMAFL S
Sbjct: 140 LALDLEDLLSFSYQVAKGMAFLAS 163

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score = 54.3 bits (131), Expect = 7e-09
 Identities = 30/145 (20%), Positives = 49/145 (33%), Gaps = 25/145 (17%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKND--------IVA-KILAVRNCTPRVSRDFNEE 149
              + L+L   +  G  G          D         VA K+L   + T +   D   E
Sbjct: 78  FPRDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLK-DDATEKDLSDLVSE 136

Query: 150 FPKL-RIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALL--------------HEGA 194
              +  I  H N++ ++G       L VI +Y + G+L   L              +   
Sbjct: 137 MEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVP 196

Query: 195 GIVVDFAQALRFAVDVARGMAFLHS 219
              + F   +     +ARGM +L S
Sbjct: 197 EEQMTFKDLVSCTYQLARGMEYLAS 221

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score = 53.8 bits (130), Expect = 8e-09
 Identities = 30/145 (20%), Positives = 49/145 (33%), Gaps = 25/145 (17%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKND--------IVA-KILAVRNCTPRVSRDFNEE 149
              + L+L   +  G  G          D         VA K+L   + T +   D   E
Sbjct: 32  FPRDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLK-DDATEKDLSDLVSE 90

Query: 150 FPKL-RIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALL--------------HEGA 194
              +  I  H N++ ++G       L VI +Y + G+L   L              +   
Sbjct: 91  MEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVP 150

Query: 195 GIVVDFAQALRFAVDVARGMAFLHS 219
              + F   +     +ARGM +L S
Sbjct: 151 EEQMTFKDLVSCTYQLARGMEYLAS 175

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score = 53.1 bits (128), Expect = 2e-08
 Identities = 26/144 (18%), Positives = 43/144 (29%), Gaps = 23/144 (15%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVR--------NCTPRVSRDFNEEF 150
           +  + L L   +  G  G          D        +        + T +   D   E 
Sbjct: 66  LPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEM 125

Query: 151 PKL-RIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSL--------------YALLHEGAG 195
             +  I  H N++ ++G       L VI +Y + G+L                       
Sbjct: 126 EMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPE 185

Query: 196 IVVDFAQALRFAVDVARGMAFLHS 219
             +     +  A  VARGM +L S
Sbjct: 186 EQLSSKDLVSCAYQVARGMEYLAS 209

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344

 Score = 51.5 bits (124), Expect = 5e-08
 Identities = 29/149 (19%), Positives = 46/149 (30%), Gaps = 28/149 (18%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAV----RNCTPRVSRDFNEEFPK 152
               +L     + SG  G              V+  +AV                 E   
Sbjct: 42  FPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKM 101

Query: 153 L-RIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSL---------------------YALL 190
           + ++ SH N++ ++G       + +I +Y  +G L                       L 
Sbjct: 102 MTQLGSHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLE 161

Query: 191 HEGAGIVVDFAQALRFAVDVARGMAFLHS 219
            E    V+ F   L FA  VA+GM FL  
Sbjct: 162 EEEDLNVLTFEDLLCFAYQVAKGMEFLEF 190

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333

 Score = 51.5 bits (124), Expect = 5e-08
 Identities = 28/141 (19%), Positives = 46/141 (32%), Gaps = 21/141 (14%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRG------RWQKNDIVA-KILAVRNCTPRVSRDFNEEFP 151
              N+L     + +G  G           +      VA K+L               E  
Sbjct: 43  FPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLK-STAHADEKEALMSELK 101

Query: 152 KL-RIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSL------------YALLHEGAGIVV 198
            +  +  H N++ ++G       ++VI++Y  +G L                   A    
Sbjct: 102 IMSHLGQHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTA 161

Query: 199 DFAQALRFAVDVARGMAFLHS 219
                L F+  VA+GMAFL S
Sbjct: 162 STRDLLHFSSQVAQGMAFLAS 182

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score = 48.4 bits (115), Expect = 6e-07
 Identities = 24/125 (19%), Positives = 51/125 (40%), Gaps = 10/125 (8%)

Query: 106 LHTKISSGPN--GDTWRGR-WQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFSHPNV 161
           L T I  G          R     + V  + + +  C+  +      E    ++F+HPN+
Sbjct: 29  LLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNI 88

Query: 162 LPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVD---FAQALRFAVDVARGMAFLH 218
           +P      +  +L V++ +MA+GS   L+       ++    A  L+    V + + ++H
Sbjct: 89  VPYRATFIADNELWVVTSFMAYGSAKDLICTHFMDGMNELAIAYILQ---GVLKALDYIH 145

Query: 219 SLERI 223
            +  +
Sbjct: 146 HMGYV 150

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359

 Score = 45.7 bits (108), Expect = 5e-06
 Identities = 24/138 (17%), Positives = 44/138 (31%), Gaps = 13/138 (9%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRW-------QKNDIVAKILAVRNCTPRVSRDFNEEFP 151
              + L L   +  G  G                  +  K+L     T    R    E  
Sbjct: 19  FPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLK-EGATHSEHRALMSELK 77

Query: 152 KL-RIFSHPNVLPVIGCVNSPPD-LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVD 209
            L  I  H NV+ ++G    P   L+VI ++  +G+L   L       V +         
Sbjct: 78  ILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKT---KGAR 134

Query: 210 VARGMAFLHSLERIIPQY 227
             +G  ++ ++   + + 
Sbjct: 135 FRQGKDYVGAIPVDLKRR 152

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 26/117 (22%), Positives = 46/117 (39%), Gaps = 8/117 (6%)

Query: 109 KISSGPNGDTWRGR-WQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIG 166
           +I  G     ++G   +    VA   L  R  T    + F EE   L+   HPN++    
Sbjct: 33  EIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYD 92

Query: 167 C----VNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS 219
                V     +V++++ M  G+L   L      V+       +   + +G+ FLH+
Sbjct: 93  SWESTVKGKKCIVLVTELMTSGTLKTYLKRFK--VMKIKVLRSWCRQILKGLQFLHT 147

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score = 42.6 bits (101), Expect = 5e-05
 Identities = 35/129 (27%), Positives = 60/129 (46%), Gaps = 11/129 (8%)

Query: 100 SLNDLSLHT-------KISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFP 151
           SL +L + +        +  G  G  ++GR     +VA K L     T      F  E  
Sbjct: 21  SLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLK-EERTQGGELQFQTEVE 79

Query: 152 KLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHE--GAGIVVDFAQALRFAVD 209
            + +  H N+L + G   +P + +++  YMA GS+ + L E   +   +D+ +  R A+ 
Sbjct: 80  MISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALG 139

Query: 210 VARGMAFLH 218
            ARG+A+LH
Sbjct: 140 SARGLAYLH 148

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 42.3 bits (100), Expect = 5e-05
 Identities = 24/133 (18%), Positives = 50/133 (37%), Gaps = 9/133 (6%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGR-WQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIF 156
           I+ +D  L   I SG            K + VA K + +  C   +  +  +E   +   
Sbjct: 12  INRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMD-ELLKEIQAMSQC 70

Query: 157 SHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAV------DV 210
            HPN++          +L ++ + ++ GS+  ++          +  L  +       +V
Sbjct: 71  HHPNIVSYYTSFVVKDELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREV 130

Query: 211 ARGMAFLHSLERI 223
             G+ +LH   +I
Sbjct: 131 LEGLEYLHKNGQI 143

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score = 41.8 bits (99), Expect = 8e-05
 Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 3/83 (3%)

Query: 144 RDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLH--EGAGIVVDFA 201
            +F  E   L    HP+++ +IG  +   ++++I +YM  G+L   L+  +   + + + 
Sbjct: 80  EEFETEIETLSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWE 139

Query: 202 QALRFAVDVARGMAFLHSLERII 224
           Q L   +  ARG+ +LH+   II
Sbjct: 140 QRLEICIGAARGLHYLHT-RAII 161

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 6/117 (5%)

Query: 109 KISSGPNGDTWRGRWQK-NDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIG 166
           KI  G  G+ ++G   +   +VA KI+ +      +  D  +E   L     P V    G
Sbjct: 29  KIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIE-DIQQEITVLSQCDSPYVTKYYG 87

Query: 167 CVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERI 223
                  L +I +Y+  GS   LL  G       A  LR   ++ +G+ +LHS ++I
Sbjct: 88  SYLKDTKLWIIMEYLGGGSALDLLEPGPLDETQIATILR---EILKGLDYLHSEKKI 141

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score = 40.6 bits (96), Expect = 2e-04
 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 1/81 (1%)

Query: 144 RDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSL-YALLHEGAGIVVDFAQ 202
           + F++E   +    H N++ ++G  +   DL ++  YM  GSL   L        + +  
Sbjct: 75  QQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHM 134

Query: 203 ALRFAVDVARGMAFLHSLERI 223
             + A   A G+ FLH    I
Sbjct: 135 RCKIAQGAANGINFLHENHHI 155

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	239
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	100.0
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	100.0
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	100.0
4aoj_A	329	High affinity nerve growth factor receptor; transf	100.0
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	100.0
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	100.0
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	100.0
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	100.0
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	100.0
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	99.98
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	99.98
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	99.97
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	99.97
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	99.97
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.97
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	99.96
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	99.96
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	99.96
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.95
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	99.95
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	99.95
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	99.95
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	99.95
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	99.95
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	99.95
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	99.95
3uqc_A	286	Probable conserved transmembrane protein; structur	99.95
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	99.95
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	99.95
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	99.95
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	99.95
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.95
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	99.95
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	99.95
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	99.95
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.95
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	99.95
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	99.95
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	99.95
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	99.95
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	99.95
3soc_A	322	Activin receptor type-2A; structural genomics cons	99.95
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	99.95
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	99.95
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	99.95
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	99.95
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	99.95
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	99.95
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	99.95
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	99.95
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	99.95
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	99.95
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	99.95
3o0g_A	292	Cell division protein kinase 5; kinase activator c	99.95
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	99.95
3niz_A	311	Rhodanese family protein; structural genomics, str	99.95
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	99.95
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	99.95
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	99.95
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.95
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	99.95
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	99.95
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	99.95
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	99.94
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	99.94
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	99.94
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	99.94
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	99.94
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	99.94
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	99.94
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	99.94
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	99.94
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	99.94
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	99.94
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	99.94
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	99.94
3rp9_A	458	Mitogen-activated protein kinase; structural genom	99.94
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	99.94
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	99.94
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	99.94
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	99.94
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	99.94
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	99.94
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	99.94
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	99.94
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.94
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	99.94
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	99.94
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	99.94
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	99.94
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.94
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	99.94
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	99.94
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	99.94
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	99.94
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	99.94
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	99.94
3ork_A	311	Serine/threonine protein kinase; structural genomi	99.94
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	99.94
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	99.94
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	99.94
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	99.94
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	99.94
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	99.94
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	99.94
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	99.94
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	99.94
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	99.94
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	99.94
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	99.94
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	99.94
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	99.94
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	99.94
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	99.94
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	99.94
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	99.94
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	99.94
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	99.94
3q4u_A	301	Activin receptor type-1; structural genomics conso	99.94
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	99.94
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	99.94
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	99.94
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	99.94
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	99.94
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	99.94
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	99.94
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	99.94
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	99.94
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	99.94
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	99.94
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	99.94
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	99.94
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	99.94
3bhy_A	283	Death-associated protein kinase 3; death associate	99.93
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	99.93
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	99.93
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	99.93
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	99.93
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	99.93
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	99.93
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	99.93
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	99.93
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	99.93
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	99.93
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.93
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	99.93
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	99.93
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	99.93
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	99.93
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	99.93
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	99.93
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	99.93
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	99.93
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	99.93
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	99.93
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	99.93
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	99.93
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	99.93
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	99.93
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.93
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	99.93
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	99.93
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	99.93
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	99.93
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	99.93
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	99.93
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	99.93
2a19_B	284	Interferon-induced, double-stranded RNA-activated	99.93
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	99.93
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	99.93
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	99.93
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	99.93
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	99.93
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	99.93
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	99.93
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	99.93
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	99.93
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	99.93
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	99.93
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	99.93
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	99.93
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	99.93
3fme_A	290	Dual specificity mitogen-activated protein kinase;	99.93
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	99.93
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	99.93
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	99.93
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	99.93
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	99.93
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	99.93
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	99.92
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	99.92
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	99.92
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	99.92
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	99.92
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	99.92
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	99.92
3an0_A	340	Dual specificity mitogen-activated protein kinase;	99.92
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	99.92
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	99.92
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	99.92
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	99.92
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	99.92
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	99.92
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	99.92
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	99.92
3pls_A	298	Macrophage-stimulating protein receptor; protein k	99.92
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	99.92
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	99.92
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	99.92
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	99.92
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	99.92
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	99.92
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	99.92
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	99.92
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	99.92
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	99.92
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.92
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	99.92
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	99.92
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	99.92
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	99.91
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	99.91
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	99.91
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.91
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	99.91
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	99.91
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	99.91
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	99.91
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	99.91
3aln_A	327	Dual specificity mitogen-activated protein kinase;	99.91
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	99.91
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	99.91
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	99.9
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.9
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	99.9
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	99.9
2dyl_A	318	Dual specificity mitogen-activated protein kinase	99.9
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	99.9
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	99.9
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	99.9
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	99.9
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	99.9
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	99.9
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	99.9
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	99.89
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	99.89
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.86
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.85
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	99.85
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.83
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	99.81
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.8
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.8
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.78
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.78
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.77
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.76
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	99.76
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.76
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.75
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.75
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.75
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.75
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.75
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.74
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.74
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.74
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.74
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.73
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.73
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.73
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.73
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.73
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.73
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.73
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.72
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.72
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.72
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.72
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.72
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.72
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.72
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.72
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.71
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.71
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.71
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.71
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.71
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.71
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.71
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.7
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.7
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.7
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.7
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.7
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.7
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.69
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.68
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.68
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.68
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.67
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.67
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.67
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.67
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.66
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.66
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.66
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.66
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.66
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.66
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.66
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.66
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.66
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.65
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.65
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.65
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.65
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.65
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.65
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.64
2etb_A	256	Transient receptor potential cation channel subfam	99.64
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.64
2rfa_A	232	Transient receptor potential cation channel subfa	99.64
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.64
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.64
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.64
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.64
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.64
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.64
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.64
2rfa_A	232	Transient receptor potential cation channel subfa	99.64
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.63
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.63
2etb_A	256	Transient receptor potential cation channel subfam	99.63
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.63
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.63
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.63
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.63
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.62
2pnn_A	273	Transient receptor potential cation channel subfa	99.62
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.62
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.62
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.62
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.62
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.62
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.61
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.61
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.61
2pnn_A	273	Transient receptor potential cation channel subfa	99.61
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.6
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.6
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.58
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.58
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.58
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.58
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.57
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.56
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.56
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.51
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.5
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.47
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.39
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	99.37
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.34
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	99.2
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.18
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	99.07
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	98.7
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	98.59
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	98.52
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	98.43
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	98.22
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	98.21
3ats_A	357	Putative uncharacterized protein; hypothetical pro	97.93
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	97.6
3f7w_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	97.53
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	97.5
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	97.19
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	96.89
3csv_A	333	Aminoglycoside phosphotransferase; YP_614837.1, ph	96.78
3dxq_A	301	Choline/ethanolamine kinase family protein; NP_106	96.66
1zyl_A	328	Hypothetical protein YIHE; putative protein kinase	96.21
2ppq_A	322	HSK, HK, homoserine kinase; structural genomics, M	96.04
1nw1_A	429	Choline kinase (49.2 KD); phospholipid synthesis,	95.62
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	94.46
3feg_A	379	Choline/ethanolamine kinase; non-protein kinase, c	89.17
2qg7_A	458	Ethanolamine kinase PV091845; malaria, SGC, struct	84.24
3mes_A	424	Choline kinase; malaria, structural genomics, stru	82.38
3i1a_A	339	Spectinomycin phosphotransferase; protein kinase,	82.24

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=100.00  E-value=1.5e-36  Score=236.21  Aligned_cols=138  Identities=29%  Similarity=0.487  Sum_probs=124.1

Q ss_pred             cccCCCCCCCcccccccCCCCCCceeeccCCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCce
Q psy12580         95 RHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDL  174 (239)
Q Consensus        95 ~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~  174 (239)
                      ..++++.+++.+.+.||+|+||.||+|.+++ .+++|++..........+.|.+|+.+|++++|||||+++|++.. +.+
T Consensus        29 ~~Wei~~~~l~l~~~iG~G~fG~Vy~~~~~~-~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~  106 (307)
T 3omv_A           29 YYWEIEASEVMLSTRIGSGSFGTVYKGKWHG-DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNL  106 (307)
T ss_dssp             CCCBCCTTSCCEEEECCCCSSSEEEEEESSS-EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSC
T ss_pred             cCcEEcHHHeEEeeEEeeCCCcEEEEEEECC-cEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEC-CeE
Confidence            4567889999999999999999999999865 58899987666666667889999999999999999999998865 568


Q ss_pred             EEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        175 VVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       175 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +||||||++|||.++|....+ .+++.++..|+.||++||+|||+.+  ||||||||+|||||
T Consensus       107 ~iVmEy~~gGsL~~~l~~~~~-~l~~~~~~~i~~qia~gL~yLH~~~--IiHRDlKp~NILl~  166 (307)
T 3omv_A          107 AIVTQWCEGSSLYKHLHVQET-KFQMFQLIDIARQTAQGMDYLHAKN--IIHRDMKSNNIFLH  166 (307)
T ss_dssp             EEEEECCSSCBHHHHHHTSCC-CCCHHHHHHHHHHHHHHHHHHHHTT--CBCSCCCSSSEEEE
T ss_pred             EEEEEcCCCCCHHHHHhhcCC-CCCHHHHHHHHHHHHHHHHHHHHCC--ccCCccCHHHEEEC
Confidence            999999999999999976542 5999999999999999999999999  99999999999997

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=100.00  E-value=1.1e-36  Score=240.21  Aligned_cols=136  Identities=17%  Similarity=0.296  Sum_probs=118.3

Q ss_pred             CCCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEE
Q psy12580        100 SLNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVI  177 (239)
Q Consensus       100 ~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv  177 (239)
                      +.++|.+.+.||+|+||.||+|..  .++.+|+|++..........+.+.+|+.+|++++|||||++++++.+++.+|||
T Consensus        22 sme~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiV  101 (350)
T 4b9d_A           22 SMEKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIV  101 (350)
T ss_dssp             CCCCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred             cccceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEE
Confidence            346899999999999999999986  467889999987766666678899999999999999999999999999999999


Q ss_pred             EeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        178 SQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       178 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||||++|+|.++|....+..+++..++.++.||+.||+|||+.|  ||||||||+||||+
T Consensus       102 mEy~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH~~~--IiHRDlKp~NILl~  159 (350)
T 4b9d_A          102 MDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHDRK--ILHRDIKSQNIFLT  159 (350)
T ss_dssp             EECCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTT--CEETTCCGGGEEEC
T ss_pred             EeCCCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHCC--eeeccCCHHHEEEC
Confidence            99999999999998765556899999999999999999999999  99999999999996

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=100.00  E-value=5.8e-36  Score=232.67  Aligned_cols=136  Identities=22%  Similarity=0.344  Sum_probs=118.2

Q ss_pred             CCCCCCCcccccccCCCCCCceeeccC-------CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeC
Q psy12580         98 GISLNDLSLHTKISSGPNGDTWRGRWQ-------KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNS  170 (239)
Q Consensus        98 ~~~~~~~~~~~~ig~g~~g~v~~~~~~-------~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~  170 (239)
                      .++.++|.+.+.||+|+||.||+|.+.       +..+|+|++..  ......+.|.+|+.+|++++|||||+++|++..
T Consensus         9 ~I~r~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~--~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~   86 (299)
T 4asz_A            9 HIKRHNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKD--ASDNARKDFHREAELLTNLQHEHIVKFYGVCVE   86 (299)
T ss_dssp             BCCGGGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECS--CCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS
T ss_pred             ccCHHHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCC--CChHHHHHHHHHHHHHHhCCCCCCccEEEEEee
Confidence            466788999999999999999999863       34577888753  344556789999999999999999999999999


Q ss_pred             CCceEEEEeeCCCCCHHHHhhcCC-----------CcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        171 PPDLVVISQYMAWGSLYALLHEGA-----------GIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       171 ~~~~~lv~e~~~~gsL~~~l~~~~-----------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ++.++||||||++|||.++|+..+           ...+++.++..++.||++||.|||+.+  ||||||||+|||||
T Consensus        87 ~~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~--iiHRDlKp~NILl~  162 (299)
T 4asz_A           87 GDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQH--FVHRDLATRNCLVG  162 (299)
T ss_dssp             SSSEEEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSGGGEEEC
T ss_pred             CCEEEEEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhCC--cccCccCHhhEEEC
Confidence            999999999999999999997642           236999999999999999999999999  99999999999997

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=100.00  E-value=5.1e-36  Score=231.53  Aligned_cols=132  Identities=20%  Similarity=0.311  Sum_probs=117.1

Q ss_pred             CcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeC----CCceEEE
Q psy12580        104 LSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNS----PPDLVVI  177 (239)
Q Consensus       104 ~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~----~~~~~lv  177 (239)
                      +.+.+.||+|+||.||+|.+.  +..+++|.+..........+.|.+|+.+|++++|||||++++++..    .+.++||
T Consensus        28 ~~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lv  107 (290)
T 3fpq_A           28 LKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLV  107 (290)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEE
T ss_pred             EEeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEE
Confidence            356778999999999999874  4667888887766666667889999999999999999999999864    3468999


Q ss_pred             EeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        178 SQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       178 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||||++|+|.+++++..  .+++..+..++.||+.||+|||+++++||||||||+||||+
T Consensus       108 mEy~~gg~L~~~l~~~~--~l~~~~~~~~~~qi~~aL~ylH~~~~~IiHRDlKp~NILl~  165 (290)
T 3fpq_A          108 TELMTSGTLKTYLKRFK--VMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFIT  165 (290)
T ss_dssp             EECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHTSSSCCCCCCCCGGGEEES
T ss_pred             EeCCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCCCEEecccChhheeEE
Confidence            99999999999998765  69999999999999999999999888899999999999996

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=100.00  E-value=1.4e-35  Score=231.42  Aligned_cols=139  Identities=23%  Similarity=0.383  Sum_probs=119.6

Q ss_pred             ccCCCCCCCcccccccCCCCCCceeeccC-------CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeee
Q psy12580         96 HKGISLNDLSLHTKISSGPNGDTWRGRWQ-------KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCV  168 (239)
Q Consensus        96 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~~-------~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~  168 (239)
                      ..+++.+++++.+.||+|+||.||+|.+.       +..||+|.+.... .....+.|.+|+.+|++++|||||+++|++
T Consensus        20 ~~ei~~~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~-~~~~~~~f~~E~~il~~l~HpNIV~l~g~~   98 (308)
T 4gt4_A           20 LKEISLSAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKA-EGPLREEFRHEAMLRARLQHPNVVCLLGVV   98 (308)
T ss_dssp             CCBCCGGGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-C-CC-CHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             cccCCHHHCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECccc-ChHHHHHHHHHHHHHHhCCCCCCCCcceEE
Confidence            34566778889999999999999999873       3467888886543 334457899999999999999999999999


Q ss_pred             eCCCceEEEEeeCCCCCHHHHhhcCC--------------CcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccc
Q psy12580        169 NSPPDLVVISQYMAWGSLYALLHEGA--------------GIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHV  234 (239)
Q Consensus       169 ~~~~~~~lv~e~~~~gsL~~~l~~~~--------------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Ni  234 (239)
                      ..++.++||||||++|||.++|....              ...+++..+..++.||++||+|||+.+  ||||||||+||
T Consensus        99 ~~~~~~~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~--iiHRDLK~~NI  176 (308)
T 4gt4_A           99 TKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHH--VVHKDLATRNV  176 (308)
T ss_dssp             CSSSSCEEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSGGGE
T ss_pred             EECCEEEEEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhCC--CCCCCccccce
Confidence            99999999999999999999997532              135899999999999999999999999  99999999999


Q ss_pred             eee
Q psy12580        235 MVY  237 (239)
Q Consensus       235 ll~  237 (239)
                      |||
T Consensus       177 Ll~  179 (308)
T 4gt4_A          177 LVY  179 (308)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            997

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=100.00  E-value=3.3e-35  Score=231.36  Aligned_cols=137  Identities=23%  Similarity=0.369  Sum_probs=120.1

Q ss_pred             cCCCCCCCcccccccCCCCCCceeeccC-------CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeee
Q psy12580         97 KGISLNDLSLHTKISSGPNGDTWRGRWQ-------KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVN  169 (239)
Q Consensus        97 ~~~~~~~~~~~~~ig~g~~g~v~~~~~~-------~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~  169 (239)
                      ..+..+++.+.+.||+|+||.||+|.++       +..+|+|++..  ......+.|.+|+.+|++++|||||+++|+|.
T Consensus        36 ~~i~~~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~--~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~  113 (329)
T 4aoj_A           36 HHIKRRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKE--ASESARQDFQREAELLTMLQHQHIVRFFGVCT  113 (329)
T ss_dssp             CBCCGGGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESC--CSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC
T ss_pred             cccCHHHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECc--CCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence            3466678889999999999999999864       34578888853  33455678999999999999999999999999


Q ss_pred             CCCceEEEEeeCCCCCHHHHhhcCC-------------CcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCcccee
Q psy12580        170 SPPDLVVISQYMAWGSLYALLHEGA-------------GIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV  236 (239)
Q Consensus       170 ~~~~~~lv~e~~~~gsL~~~l~~~~-------------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill  236 (239)
                      .++.++||||||++|||.++++...             ..++++.++..|+.||++||.|||+.+  ||||||||+||||
T Consensus       114 ~~~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~--iiHRDLKp~NILl  191 (329)
T 4aoj_A          114 EGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLH--FVHRDLATRNCLV  191 (329)
T ss_dssp             SSSSEEEEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEE
T ss_pred             ECCEEEEEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcCC--eecccccHhhEEE
Confidence            9999999999999999999997642             135899999999999999999999999  9999999999999


Q ss_pred             e
Q psy12580        237 Y  237 (239)
Q Consensus       237 ~  237 (239)
                      |
T Consensus       192 ~  192 (329)
T 4aoj_A          192 G  192 (329)
T ss_dssp             E
T ss_pred             C
Confidence            7

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=100.00  E-value=5e-36  Score=232.83  Aligned_cols=135  Identities=14%  Similarity=0.177  Sum_probs=120.7

Q ss_pred             CCCCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccC-CchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceE
Q psy12580         99 ISLNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNC-TPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLV  175 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~  175 (239)
                      ...++|++.+.||+|+||.||+|..  .++.+|+|++..... .....+.+.+|+.+|+.++|||||++++++.+.+.+|
T Consensus        29 ~~~~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~y  108 (311)
T 4aw0_A           29 KRPEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLY  108 (311)
T ss_dssp             CCGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEE
T ss_pred             CCccccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEE
Confidence            3457899999999999999999986  467788899875432 2233467899999999999999999999999999999


Q ss_pred             EEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        176 VISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       176 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||||||++|+|.+++++.+  .+++..++.++.||+.||+|||+.+  ||||||||+||||+
T Consensus       109 ivmEy~~gG~L~~~i~~~~--~l~e~~~~~~~~qi~~al~ylH~~~--IiHRDlKPeNILl~  166 (311)
T 4aw0_A          109 FGLSYAKNGELLKYIRKIG--SFDETCTRFYTAEIVSALEYLHGKG--IIHRDLKPENILLN  166 (311)
T ss_dssp             EEECCCTTEEHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEEC
T ss_pred             EEEecCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCC--CccCCCCHHHeEEc
Confidence            9999999999999998766  6999999999999999999999999  99999999999996

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=100.00  E-value=5e-36  Score=232.72  Aligned_cols=136  Identities=16%  Similarity=0.201  Sum_probs=114.8

Q ss_pred             CCCCCCCcccccccCCCCCCceeecc-----CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCC
Q psy12580         98 GISLNDLSLHTKISSGPNGDTWRGRW-----QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP  172 (239)
Q Consensus        98 ~~~~~~~~~~~~ig~g~~g~v~~~~~-----~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~  172 (239)
                      .++.++|++.+.||+|+||.||+|+.     .+..+|+|++............+.+|+.+|++++|||||++++++.+++
T Consensus        20 ~~~p~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~   99 (304)
T 3ubd_A           20 KADPSQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEG   99 (304)
T ss_dssp             CCCGGGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEETT
T ss_pred             cCCccccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECC
Confidence            34567899999999999999999975     2456888998655433333346788999999999999999999999999


Q ss_pred             ceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        173 DLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       173 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .+|||||||++|+|.+++.+.+  .+++..+..++.||+.||+|||++|  ||||||||+|||++
T Consensus       100 ~~~ivmEy~~gg~L~~~l~~~~--~l~e~~~~~~~~qi~~aL~ylH~~~--IiHRDlKp~NILl~  160 (304)
T 3ubd_A          100 KLYLILDFLRGGDLFTRLSKEV--MFTEEDVKFYLAELALALDHLHSLG--IIYRDLKPENILLD  160 (304)
T ss_dssp             EEEEEECCCTTCEEHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTT--CCCSSCCGGGEEEC
T ss_pred             EEEEEEEcCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCC--CcCCCCCHHHeEEc
Confidence            9999999999999999998866  6999999999999999999999999  99999999999996

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=100.00  E-value=7e-35  Score=229.61  Aligned_cols=129  Identities=16%  Similarity=0.228  Sum_probs=116.2

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEe
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQ  179 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e  179 (239)
                      ..|+..+.||+|+||.||+|..  .+..+|+|++.......  .+.+.+|+.+|+.++|||||++++++..++.+|||||
T Consensus        74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~--~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmE  151 (346)
T 4fih_A           74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQR--RELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVME  151 (346)
T ss_dssp             GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSS--GGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEC
T ss_pred             HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhH--HHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEe
Confidence            5588889999999999999987  46778889987654322  3567899999999999999999999999999999999


Q ss_pred             eCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       180 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||++|+|.+++...   .+++..+..++.||+.||+|||+.|  ||||||||+||||+
T Consensus       152 y~~gg~L~~~l~~~---~l~e~~~~~~~~qi~~aL~ylH~~~--IiHRDlKp~NILl~  204 (346)
T 4fih_A          152 FLEGGALTDIVTHT---RMNEEQIAAVCLAVLQALSVLHAQG--VIHRDIKSDSILLT  204 (346)
T ss_dssp             CCTTEEHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEEC
T ss_pred             CCCCCcHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHCC--cccccCCHHHEEEC
Confidence            99999999999874   4999999999999999999999999  99999999999996

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=100.00  E-value=2.1e-34  Score=220.74  Aligned_cols=132  Identities=14%  Similarity=0.324  Sum_probs=112.5

Q ss_pred             CCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCC-chHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEE
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCT-PRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVI  177 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv  177 (239)
                      ..+|++.+.||+|+||.||+|..  .+..+|+|++...... ......+.+|+.+|+.++||||+++++++.+.+.++||
T Consensus        12 ig~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv   91 (275)
T 3hyh_A           12 IGNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMV   91 (275)
T ss_dssp             --CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             eeCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEE
Confidence            35799999999999999999987  4678888998765432 23346789999999999999999999999999999999


Q ss_pred             EeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        178 SQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       178 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |||| +|+|.+++...+  .+++..+..++.||+.||+|||++|  ||||||||+|||++
T Consensus        92 mEy~-~g~L~~~l~~~~--~l~e~~~~~~~~qi~~al~ylH~~~--IiHRDiKP~NILl~  146 (275)
T 3hyh_A           92 IEYA-GNELFDYIVQRD--KMSEQEARRFFQQIISAVEYCHRHK--IVHRDLKPENLLLD  146 (275)
T ss_dssp             EECC-CEEHHHHHHHSC--SCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCTTTEEEC
T ss_pred             EeCC-CCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCC--cccccCChHHeEEC
Confidence            9999 579999998876  6999999999999999999999999  99999999999996

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=100.00  E-value=2e-34  Score=226.34  Aligned_cols=127  Identities=18%  Similarity=0.276  Sum_probs=114.2

Q ss_pred             CCCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEE
Q psy12580        100 SLNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVI  177 (239)
Q Consensus       100 ~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv  177 (239)
                      ....|...++||+|+||.||+|.+  .+..+|+|++.....       ..+|+.+++.++|||||++++++.+++.+|||
T Consensus        56 ~~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-------~~~E~~il~~l~HpnIV~l~~~~~~~~~~~iv  128 (336)
T 4g3f_A           56 EVHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-------RVEELVACAGLSSPRIVPLYGAVREGPWVNIF  128 (336)
T ss_dssp             TTTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-------CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             chhheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHh-------HHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence            345677888999999999999987  467888899865432       24699999999999999999999999999999


Q ss_pred             EeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        178 SQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       178 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||||++|+|.++++..+  .+++..+..++.||+.||+|||+++  ||||||||+||||+
T Consensus       129 mEy~~gg~L~~~l~~~~--~l~e~~~~~~~~qi~~aL~ylH~~~--IiHRDlKp~NILl~  184 (336)
T 4g3f_A          129 MELLEGGSLGQLIKQMG--CLPEDRALYYLGQALEGLEYLHTRR--ILHGDVKADNVLLS  184 (336)
T ss_dssp             ECCCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHTTT--EECSCCCGGGEEEC
T ss_pred             EeccCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCC--ceecccCHHHEEEe
Confidence            99999999999998766  6999999999999999999999999  99999999999996

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=100.00  E-value=3.2e-34  Score=231.11  Aligned_cols=129  Identities=16%  Similarity=0.229  Sum_probs=116.5

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEe
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQ  179 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e  179 (239)
                      ..|+..+.||+|+||.||+|..  .+..+|+|++......  ..+.+.+|+.+|+.++|||||++++++...+.+|||||
T Consensus       151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~--~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmE  228 (423)
T 4fie_A          151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQ--RRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVME  228 (423)
T ss_dssp             GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCS--SGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             HhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchh--HHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEEEe
Confidence            5688999999999999999987  4677888998755332  23568899999999999999999999999999999999


Q ss_pred             eCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       180 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||++|+|.++++...   +++..+..++.||+.||+|||+.|  ||||||||+||||+
T Consensus       229 y~~gG~L~~~i~~~~---l~e~~~~~~~~qil~aL~ylH~~~--IiHRDiKp~NILl~  281 (423)
T 4fie_A          229 FLEGGALTDIVTHTR---MNEEQIAAVCLAVLQALSVLHAQG--VIHRDIKSDSILLT  281 (423)
T ss_dssp             CCTTEEHHHHHHHSC---CCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSTTTEEEC
T ss_pred             CCCCCcHHHHHhccC---CCHHHHHHHHHHHHHHHHHHHHCC--eecccCCHHHEEEc
Confidence            999999999998654   999999999999999999999999  99999999999996

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=100.00  E-value=2.8e-33  Score=217.80  Aligned_cols=133  Identities=14%  Similarity=0.172  Sum_probs=111.4

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCC-------
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP-------  172 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~-------  172 (239)
                      .+|++.+.||+|+||.||+|..  .+..+|+|++.... .....+.+.+|+.+|++++|||||++++++...+       
T Consensus         5 ~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~-~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~   83 (299)
T 4g31_A            5 TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPN-RELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQP   83 (299)
T ss_dssp             HHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECS-SHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC-------
T ss_pred             hhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccC-CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCccccccc
Confidence            4678889999999999999986  46788889886543 3444567899999999999999999999886543       


Q ss_pred             -----ceEEEEeeCCCCCHHHHhhcCCC-cccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        173 -----DLVVISQYMAWGSLYALLHEGAG-IVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       173 -----~~~lv~e~~~~gsL~~~l~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                           .+|||||||++|+|.+++..... ...++..++.++.||++||+|||+.|  ||||||||+||||+
T Consensus        84 ~~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH~~~--IiHRDlKp~NILl~  152 (299)
T 4g31_A           84 SSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLHSKG--LMHRDLKPSNIFFT  152 (299)
T ss_dssp             ---CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCGGGEEEC
T ss_pred             cCCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHCc--CccccCcHHHeEEC
Confidence                 37999999999999999987542 23556778999999999999999999  99999999999996

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=100.00  E-value=1.7e-33  Score=219.87  Aligned_cols=130  Identities=28%  Similarity=0.502  Sum_probs=109.5

Q ss_pred             CCCcccccccCCCCCCceeeccCCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCC----ceEEE
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP----DLVVI  177 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~----~~~lv  177 (239)
                      .++.+.+.||+|+||.||+|.+++..||+|++....   .....+..|+..+..++|||||++++++..++    .++||
T Consensus         3 r~i~L~~~iG~G~fG~Vy~~~~~g~~VAvK~l~~~~---~~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV   79 (303)
T 3hmm_A            3 RTIVLQESIGKGRFGEVWRGKWRGEEVAVKIFSSRE---ERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLV   79 (303)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEETTEEEEEEEECGGG---HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEE
T ss_pred             cEEEEEEEEeeCCCeEEEEEEECCEEEEEEEECccc---hhhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEEE
Confidence            357788999999999999999999999999985432   12223345666677889999999999997654    58999


Q ss_pred             EeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcC------CCCcccCCCCCccceee
Q psy12580        178 SQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSL------ERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       178 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~------~~~ivHrdikp~Nill~  237 (239)
                      ||||++|||.++++..+   +++..+.+++.|+++||+|||+.      .++||||||||+|||||
T Consensus        80 ~Ey~~~gsL~~~l~~~~---l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~  142 (303)
T 3hmm_A           80 SDYHEHGSLFDYLNRYT---VTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVK  142 (303)
T ss_dssp             EECCTTCBHHHHHHHCC---BCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEEC
T ss_pred             ecCCCCCcHHHHHHhCC---CCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEEC
Confidence            99999999999998754   89999999999999999999986      12399999999999997

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=99.98  E-value=1.2e-32  Score=218.39  Aligned_cols=139  Identities=22%  Similarity=0.341  Sum_probs=117.9

Q ss_pred             ccCCCCCCCcccccccCCCCCCceeeccCC-------CceeeeeeeeccCCchHHHHHHHHHhHhhhcCC-Cceeeeeee
Q psy12580         96 HKGISLNDLSLHTKISSGPNGDTWRGRWQK-------NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSH-PNVLPVIGC  167 (239)
Q Consensus        96 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~-------~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h-~~iv~l~~~  167 (239)
                      .++++.++|++.+.||+|+||.||+|.+.+       ..+++|.+... ......+.|.+|+.+|.++.| ||||+++|+
T Consensus        58 ~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~-~~~~~~~~~~~E~~il~~l~hhpnIV~l~g~  136 (353)
T 4ase_A           58 KWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEG-ATHSEHRALMSELKILIHIGHHLNVVNLLGA  136 (353)
T ss_dssp             HHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTT-CCHHHHHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             ccEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccc-cChHHHHHHHHHHHHHHHcCCCCcEEEEEEE
Confidence            357888999999999999999999998743       24666777543 334455779999999999965 899999999


Q ss_pred             eeCC-CceEEEEeeCCCCCHHHHhhcCC--------------CcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCc
Q psy12580        168 VNSP-PDLVVISQYMAWGSLYALLHEGA--------------GIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSR  232 (239)
Q Consensus       168 ~~~~-~~~~lv~e~~~~gsL~~~l~~~~--------------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~  232 (239)
                      |... +.++||||||++|+|.++|+...              ...+++..+..++.||++||+|||+.+  ||||||||+
T Consensus       137 ~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~~--iiHRDLK~~  214 (353)
T 4ase_A          137 CTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRK--CIHRDLAAR  214 (353)
T ss_dssp             ECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSGG
T ss_pred             EEecCCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhhCC--eecCccCcc
Confidence            8664 57999999999999999997532              134899999999999999999999999  999999999


Q ss_pred             cceee
Q psy12580        233 HVMVY  237 (239)
Q Consensus       233 Nill~  237 (239)
                      |||+|
T Consensus       215 NILl~  219 (353)
T 4ase_A          215 NILLS  219 (353)
T ss_dssp             GEEEC
T ss_pred             ceeeC
Confidence            99997

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=99.98  E-value=1.8e-32  Score=220.89  Aligned_cols=131  Identities=16%  Similarity=0.295  Sum_probs=116.3

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeC------CCc
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNS------PPD  173 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~------~~~  173 (239)
                      ++|++.+.||+|+||.||+|..  .+..+|+|++..........+.+.+|+.+|+.++|||||++++++..      .+.
T Consensus        54 ~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~~  133 (398)
T 4b99_A           54 DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKS  133 (398)
T ss_dssp             SSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCCC
T ss_pred             CCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCCE
Confidence            5689999999999999999987  46788889987655555556778899999999999999999998754      357


Q ss_pred             eEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        174 LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +|||||||+ |+|.+++....  .+++..+..++.||+.||+|||+.|  ||||||||+|||++
T Consensus       134 ~~ivmE~~~-g~L~~~i~~~~--~l~~~~~~~~~~qil~al~ylH~~~--iiHRDlKP~NIl~~  192 (398)
T 4b99_A          134 VYVVLDLME-SDLHQIIHSSQ--PLTLEHVRYFLYQLLRGLKYMHSAQ--VIHRDLKPSNLLVN  192 (398)
T ss_dssp             EEEEEECCS-EEHHHHHTSSS--CCCHHHHHHHHHHHHHHHHHHHHTT--CBCCCCCGGGEEEC
T ss_pred             EEEEEeCCC-CCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCc--CcCCCcCccccccC
Confidence            899999996 68999998766  7999999999999999999999999  99999999999996

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=99.97  E-value=4.7e-31  Score=222.21  Aligned_cols=136  Identities=18%  Similarity=0.194  Sum_probs=115.8

Q ss_pred             CCCCCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCc-hHHHHHH---HHHhHhhhcCCCceeeeeeeeeCC
Q psy12580         98 GISLNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTP-RVSRDFN---EEFPKLRIFSHPNVLPVIGCVNSP  171 (239)
Q Consensus        98 ~~~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~-~~~~~~~---~e~~~l~~l~h~~iv~l~~~~~~~  171 (239)
                      .+..++|.+.+.||+|+||.||+|+.  .+..+|+|++....... .......   .++.++..++|||||++++++.+.
T Consensus       185 ~~slddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~  264 (689)
T 3v5w_A          185 HLTMNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTP  264 (689)
T ss_dssp             CCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECS
T ss_pred             CCchHHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEEC
Confidence            45678999999999999999999987  45778889986542211 1112233   345667778999999999999999


Q ss_pred             CceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        172 PDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       172 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +.+|||||||+||+|.++|...+  .+++..++.++.||+.||+|||+.|  ||||||||+|||||
T Consensus       265 ~~lylVmEy~~GGdL~~~l~~~~--~l~E~~a~~y~~qIl~aL~yLH~~g--IiHRDLKPeNILld  326 (689)
T 3v5w_A          265 DKLSFILDLMNGGDLHYHLSQHG--VFSEADMRFYAAEIILGLEHMHNRF--VVYRDLKPANILLD  326 (689)
T ss_dssp             SEEEEEECCCCSCBHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHTTT--EECCCCSGGGEEEC
T ss_pred             CEEEEEEecCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCC--ccccCCchHHeEEe
Confidence            99999999999999999998866  6999999999999999999999999  99999999999997

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=99.97  E-value=2.9e-30  Score=198.72  Aligned_cols=142  Identities=57%  Similarity=1.019  Sum_probs=129.3

Q ss_pred             ccCCCCCCCcccccccCCCCCCceeeccCCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCC--Cc
Q psy12580         96 HKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSP--PD  173 (239)
Q Consensus        96 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~--~~  173 (239)
                      ...+..++|.+.+.||+|+||.||+|.+++..+++|++..........+.+.+|+.+++.++||||+++++++...  +.
T Consensus         4 ~~~i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   83 (271)
T 3kmu_A            4 HSGIDFKQLNFLTKLNENHSGELWKGRWQGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPH   83 (271)
T ss_dssp             CCCCCGGGCEEEEEEEEETTEEEEEEEETTEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSS
T ss_pred             cCCCCHHHhHHHHHhcCCCcceEEEEEECCeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCC
Confidence            3556778899999999999999999999999999999987766666667899999999999999999999999877  68


Q ss_pred             eEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        174 LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .++||||+++|+|.+++.......+++..++.++.|++.||.|||+.+++|+||||||+|||++
T Consensus        84 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~~i~H~dikp~Nil~~  147 (271)
T 3kmu_A           84 PTLITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHTLEPLIPRHALNSRSVMID  147 (271)
T ss_dssp             CEEEEECCTTCBHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHTTSSSCCTTCCCSGGGEEEC
T ss_pred             eEeeecccCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcCCCceecCCCccceEEEc
Confidence            8999999999999999998765568999999999999999999999888899999999999987

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=99.97  E-value=1.1e-30  Score=208.40  Aligned_cols=125  Identities=17%  Similarity=0.299  Sum_probs=109.9

Q ss_pred             CCCcccccccCCCCCCceeeccC-----CCceeeeeeeeccCCchHHHHHHHHHhHhhhc-CCCceeeeeeeeeCCCceE
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRWQ-----KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIF-SHPNVLPVIGCVNSPPDLV  175 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~~-----~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~l~~~~~~~~~~~  175 (239)
                      +.|++.+.||+|+||.||+|..+     +..+|+|.+....    ....+.+|+.+|..+ +||||+++++++...+.++
T Consensus        21 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~----~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~~~~~   96 (361)
T 4f9c_A           21 NVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTS----HPIRIAAELQCLTVAGGQDNVMGVKYCFRKNDHVV   96 (361)
T ss_dssp             GTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTS----CHHHHHHHHHHHHHTCSBTTBCCCSEEEEETTEEE
T ss_pred             CcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEcccc----CHHHHHHHHHHHHHhcCCCCCceEEEEEEECCEEE
Confidence            56889999999999999999752     3567778775432    235678899999998 6999999999999999999


Q ss_pred             EEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        176 VISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       176 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||||||++|+|.++++     .+++.+++.++.|++.||+|||+.|  ||||||||+|||++
T Consensus        97 lvmE~~~g~~L~~~~~-----~l~~~~~~~~~~qll~al~ylH~~g--IiHRDiKPeNiLl~  151 (361)
T 4f9c_A           97 IAMPYLEHESFLDILN-----SLSFQEVREYMLNLFKALKRIHQFG--IVHRDVKPSNFLYN  151 (361)
T ss_dssp             EEEECCCCCCHHHHHT-----TCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEEE
T ss_pred             EEEeCCCcccHHHHHc-----CCCHHHHHHHHHHHHHHHHHHHHCC--eEeCcCCHHHeEEe
Confidence            9999999999999984     3899999999999999999999999  99999999999996

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.97  E-value=2.6e-30  Score=217.59  Aligned_cols=131  Identities=16%  Similarity=0.360  Sum_probs=116.9

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEe
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQ  179 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e  179 (239)
                      ++|++.+.||+|+||.||+|..  .+..+|+|++....  ....+.+.+|+.+|+.++||||+++++++...+.++||||
T Consensus       157 ~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~--~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv~E  234 (573)
T 3uto_A          157 DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPH--ESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYE  234 (573)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS--HHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             cccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccc--hhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEe
Confidence            5788999999999999999987  45778889886532  3334678899999999999999999999999999999999


Q ss_pred             eCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       180 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||++|+|.+++....+ .+++..+..++.||+.||+|||+++  |+||||||+|||++
T Consensus       235 ~~~gg~L~~~i~~~~~-~l~e~~~~~~~~qi~~al~ylH~~~--iiHRDlKp~Nill~  289 (573)
T 3uto_A          235 FMSGGELFEKVADEHN-KMSEDEAVEYMRQVCKGLCHMHENN--YVHLDLKPENIMFT  289 (573)
T ss_dssp             CCCCCBHHHHHTCTTS-CEEHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEES
T ss_pred             ecCCCcHHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHHHHCC--eeeccCChhhcccc
Confidence            9999999999976542 5999999999999999999999999  99999999999996

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=99.96  E-value=1.3e-29  Score=198.87  Aligned_cols=141  Identities=32%  Similarity=0.590  Sum_probs=127.3

Q ss_pred             cCCCCCCCcccccccCCCCCCceeeccCCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEE
Q psy12580         97 KGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVV  176 (239)
Q Consensus        97 ~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~l  176 (239)
                      ..+...+|.+.+.||+|+||.||+|.+.+..+++|++..........+.+.+|+.++++++||||+++++++...+..++
T Consensus        32 ~~i~~~~y~i~~~lG~G~~g~V~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~l  111 (309)
T 3p86_A           32 MDIPWCDLNIKEKIGAGSFGTVHRAEWHGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSI  111 (309)
T ss_dssp             CBCCGGGEEEEEEEEECSSEEEEEEEETTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTCCEE
T ss_pred             ccCChhHceeeeEeecCCCeEEEEEEECCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCceEE
Confidence            44667889999999999999999999989999999987766666666789999999999999999999999999999999


Q ss_pred             EEeeCCCCCHHHHhhcCCC-cccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        177 ISQYMAWGSLYALLHEGAG-IVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       177 v~e~~~~gsL~~~l~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||||+++|+|.+++..... ..+++..++.++.|++.||+|||+.+++|+||||||+|||++
T Consensus       112 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~~~ivH~Dikp~NIll~  173 (309)
T 3p86_A          112 VTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNRNPPIVHRNLKSPNLLVD  173 (309)
T ss_dssp             EEECCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHHTSSSCCCCTTCCGGGEEEC
T ss_pred             EEecCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEECCCCChhhEEEe
Confidence            9999999999999987542 248999999999999999999999887899999999999986

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=99.96  E-value=3.7e-29  Score=197.76  Aligned_cols=134  Identities=16%  Similarity=0.295  Sum_probs=122.2

Q ss_pred             CCCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEE
Q psy12580        100 SLNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVI  177 (239)
Q Consensus       100 ~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv  177 (239)
                      ...+|.+.+.||+|+||.||+|..  .+..+++|++..........+.+.+|+.+++.++||||+++++++...+..++|
T Consensus        13 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv   92 (328)
T 3fe3_A           13 HIGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLI   92 (328)
T ss_dssp             EETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             ccCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEE
Confidence            346789999999999999999986  567888899877666666667889999999999999999999999999999999


Q ss_pred             EeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        178 SQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       178 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |||+++|+|.+++...+  .+++..+..++.|++.||+|||+.+  |+||||||+|||++
T Consensus        93 ~e~~~~~~L~~~l~~~~--~l~~~~~~~~~~qi~~al~~lH~~~--ivHrDlkp~NIll~  148 (328)
T 3fe3_A           93 MEYASGGEVFDYLVAHG--RMKEKEARSKFRQIVSAVQYCHQKR--IVHRDLKAENLLLD  148 (328)
T ss_dssp             ECCCTTCBHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEEC
T ss_pred             EECCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCC--EeccCCCHHHEEEc
Confidence            99999999999998765  6999999999999999999999999  99999999999996

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=99.96  E-value=1.7e-28  Score=198.44  Aligned_cols=137  Identities=16%  Similarity=0.269  Sum_probs=124.1

Q ss_pred             CCCCCCcccccccCC--CCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCce
Q psy12580         99 ISLNDLSLHTKISSG--PNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDL  174 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g--~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~  174 (239)
                      ....+|.+.+.||+|  +||.||+|...  +..+++|++..........+.+.+|+.+++.++||||+++++++...+..
T Consensus        22 ~~~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~  101 (389)
T 3gni_B           22 PEGGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNEL  101 (389)
T ss_dssp             CCGGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEE
T ss_pred             CCCCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCEE
Confidence            455789999999999  99999999974  67788899987766666667888999999999999999999999999999


Q ss_pred             EEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        175 VVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       175 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ++||||+++|+|.+++.......+++..+..++.||+.||+|||+.+  |+||||||+|||++
T Consensus       102 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~--ivHrDlkp~NIll~  162 (389)
T 3gni_B          102 WVVTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIHHMG--YVHRSVKASHILIS  162 (389)
T ss_dssp             EEEEECCTTCBHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEEC
T ss_pred             EEEEEccCCCCHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCCHHHEEEc
Confidence            99999999999999998764447999999999999999999999999  99999999999996

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=99.95  E-value=3e-28  Score=195.10  Aligned_cols=132  Identities=15%  Similarity=0.229  Sum_probs=120.1

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEe
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQ  179 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e  179 (239)
                      ++|.+.+.||+|+||.||+|..  .+..+++|++..........+.+.+|+.+++.++||||+++++++...+..++|||
T Consensus        29 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~e  108 (362)
T 2bdw_A           29 DNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVFD  108 (362)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred             cCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEe
Confidence            5688899999999999999987  35778889987766555566788999999999999999999999999999999999


Q ss_pred             eCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       180 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |+++|+|.+++....  .+++..+..++.||+.||.|||+.+  |+||||||+|||++
T Consensus       109 ~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~al~~lH~~~--ivH~Dlkp~NIll~  162 (362)
T 2bdw_A          109 LVTGGELFEDIVARE--FYSEADASHCIQQILESIAYCHSNG--IVHRNLKPENLLLA  162 (362)
T ss_dssp             CCCSCBHHHHHTTCS--CCCHHHHHHHHHHHHHHHHHHHHTT--CBCCCCSGGGEEES
T ss_pred             cCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCC--eEeccCchHHEEEe
Confidence            999999999998765  6899999999999999999999999  99999999999996

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=99.95  E-value=5.4e-28  Score=194.32  Aligned_cols=136  Identities=24%  Similarity=0.445  Sum_probs=118.8

Q ss_pred             CCCCCCCcccccccCCCCCCceeeccC-----CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCC
Q psy12580         98 GISLNDLSLHTKISSGPNGDTWRGRWQ-----KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP  172 (239)
Q Consensus        98 ~~~~~~~~~~~~ig~g~~g~v~~~~~~-----~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~  172 (239)
                      .+...+|.+.+.||+|+||.||+|.+.     +..+++|.+... ......+.+.+|+.++.+++||||+++++++...+
T Consensus        41 ~~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~  119 (373)
T 2qol_A           41 ELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVG-YTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSK  119 (373)
T ss_dssp             BCCGGGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTT-CCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSS
T ss_pred             hcCHhhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCc-cCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCC
Confidence            455678899999999999999999864     355778887543 23445577999999999999999999999999999


Q ss_pred             ceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        173 DLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       173 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ..++||||+++|+|.+++.... ..+++..+..++.|++.||.|||+.+  |+||||||+|||++
T Consensus       120 ~~~lv~e~~~~~sL~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH~~~--ivH~Dlkp~NIll~  181 (373)
T 2qol_A          120 PVMIVTEYMENGSLDSFLRKHD-AQFTVIQLVGMLRGIASGMKYLSDMG--YVHRDLAARNILIN  181 (373)
T ss_dssp             SCEEEEECCTTCBHHHHHHTTT-TCSCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEEC
T ss_pred             ceEEEEeCCCCCcHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHHCC--eeCCCCCcceEEEc
Confidence            9999999999999999998754 35899999999999999999999999  99999999999996

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=99.95  E-value=1.7e-28  Score=194.60  Aligned_cols=135  Identities=17%  Similarity=0.208  Sum_probs=118.6

Q ss_pred             CCCCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccC-CchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceE
Q psy12580         99 ISLNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNC-TPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLV  175 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~  175 (239)
                      +..++|.+.+.||+|+||.||++..  .+..+++|++..... .......+.+|..++..++||||+++++++...+.++
T Consensus         2 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~   81 (337)
T 1o6l_A            2 VTMNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLC   81 (337)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEE
T ss_pred             CChHHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEE
Confidence            3457889999999999999999987  457788898865421 1223456788999999999999999999999999999


Q ss_pred             EEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        176 VISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       176 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +||||+++|+|.+++....  .+++..++.++.||+.||+|||+.|  |+||||||+|||++
T Consensus        82 lv~E~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~~--ivHrDlkp~NIll~  139 (337)
T 1o6l_A           82 FVMEYANGGELFFHLSRER--VFTEERARFYGAEIVSALEYLHSRD--VVYRDIKLENLMLD  139 (337)
T ss_dssp             EEEECCTTCBHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHHHTT--CBCCCCCGGGEEEC
T ss_pred             EEEeCCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCC--eecCcCCHHHEEEC
Confidence            9999999999999998765  6899999999999999999999999  99999999999996

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.95  E-value=6.1e-28  Score=185.75  Aligned_cols=135  Identities=24%  Similarity=0.403  Sum_probs=119.6

Q ss_pred             cCCCCCCCcccccccCCCCCCceeecc-CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceE
Q psy12580         97 KGISLNDLSLHTKISSGPNGDTWRGRW-QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLV  175 (239)
Q Consensus        97 ~~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~  175 (239)
                      +.+..++|.+.+.||+|+||.||+|.+ .++.+++|++......   .+.+.+|+.++++++||||+++++++...+..+
T Consensus         5 ~~i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~---~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~   81 (269)
T 4hcu_A            5 WVIDPSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMS---EEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPIC   81 (269)
T ss_dssp             CBCCGGGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTTSBC---HHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEE
T ss_pred             EEeChhhceeeheecCCCccEEEEEEecCCCeEEEEEecccccC---HHHHHHHHHHHHhCCCCCEeeEEEEEecCCceE
Confidence            456678899999999999999999998 5566778888654332   356889999999999999999999999999999


Q ss_pred             EEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        176 VISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       176 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +||||+++|+|.+++....+ .+++..+..++.|++.||.|||+.+  |+||||||+|||++
T Consensus        82 lv~e~~~~~~L~~~l~~~~~-~~~~~~~~~i~~~i~~~l~~lH~~~--i~H~dikp~Nil~~  140 (269)
T 4hcu_A           82 LVFEFMEHGCLSDYLRTQRG-LFAAETLLGMCLDVCEGMAYLEEAC--VIHRDLAARNCLVG  140 (269)
T ss_dssp             EEEECCTTCBHHHHHHTTTT-CCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEEC
T ss_pred             EEEEeCCCCcHHHHHHhcCc-ccCHHHHHHHHHHHHHHHHHHHhCC--eecCCcchheEEEc
Confidence            99999999999999976542 5899999999999999999999999  99999999999985

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=99.95  E-value=2.6e-28  Score=196.40  Aligned_cols=138  Identities=12%  Similarity=0.245  Sum_probs=120.9

Q ss_pred             ccCCCCCCCcccccccCCCCCCceeeccC--CCceeeeeeeeccC-CchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCC
Q psy12580         96 HKGISLNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNC-TPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP  172 (239)
Q Consensus        96 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~  172 (239)
                      ...+..++|.+.+.||+|+||.||++...  +..+++|++..... .....+.+.+|+.++..++||||+++++++...+
T Consensus         9 ~~~v~~~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~   88 (384)
T 4fr4_A            9 NEDVNFDHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEE   88 (384)
T ss_dssp             CCCCCGGGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSS
T ss_pred             CCCCChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCC
Confidence            34566788999999999999999999874  45678888865421 1223467889999999999999999999999999


Q ss_pred             ceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        173 DLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       173 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ..++||||+.+|+|.+++....  .+++..+..++.|++.||.|||+.|  |+||||||+|||++
T Consensus        89 ~~~lv~e~~~gg~L~~~l~~~~--~l~~~~~~~~~~qi~~aL~~LH~~g--ivHrDlkp~NIll~  149 (384)
T 4fr4_A           89 DMFMVVDLLLGGDLRYHLQQNV--HFKEETVKLFICELVMALDYLQNQR--IIHRDMKPDNILLD  149 (384)
T ss_dssp             EEEEEECCCTTEEHHHHHHTTC--CCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEEC
T ss_pred             EEEEEEecCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCC--ceeccCcHHHeEEC
Confidence            9999999999999999998865  6999999999999999999999999  99999999999996

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=99.95  E-value=2.4e-28  Score=200.17  Aligned_cols=132  Identities=14%  Similarity=0.225  Sum_probs=117.7

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEe
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQ  179 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e  179 (239)
                      ++|.+.+.||+|+||.||+|..  .+..+++|++..........+.+.+|+.+++.++||||+++++++...+..++|||
T Consensus        11 ~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~lv~E   90 (444)
T 3soa_A           11 EEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYLIFD   90 (444)
T ss_dssp             HHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEEEEC
T ss_pred             CCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEEEEE
Confidence            5678889999999999999976  46677888887665555556778999999999999999999999999999999999


Q ss_pred             eCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       180 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |+++|+|.+++....  .+++..+..++.||+.||.|||+.|  |+||||||+|||++
T Consensus        91 ~~~gg~L~~~i~~~~--~~~e~~~~~i~~qil~aL~~lH~~g--ivHrDlKp~NIll~  144 (444)
T 3soa_A           91 LVTGGELFEDIVARE--YYSEADASHCIQQILEAVLHCHQMG--VVHRNLKPENLLLA  144 (444)
T ss_dssp             CCBCCBHHHHHHHCS--CCCHHHHHHHHHHHHHHHHHHHHTT--CBCCCCSSTTEEES
T ss_pred             eCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCC--ccccCCCHHHEEEe
Confidence            999999999998876  6999999999999999999999999  99999999999996

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=99.95  E-value=3.8e-28  Score=188.52  Aligned_cols=131  Identities=15%  Similarity=0.134  Sum_probs=114.9

Q ss_pred             CCCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCC-chHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEE
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCT-PRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVI  177 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv  177 (239)
                      ...|.+.+.||+|+||.||+|...  +..+++|++...... ....+.+.+|+..+..++||||+++++++...+..++|
T Consensus        30 ~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv  109 (286)
T 3uqc_A           30 NGRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVV  109 (286)
T ss_dssp             TTTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             cCcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEEE
Confidence            356889999999999999999874  577888988765433 34457789999999999999999999999999999999


Q ss_pred             EeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        178 SQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       178 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |||+++++|.++++..    .....+..++.|++.||+|||+.|  |+||||||+|||++
T Consensus       110 ~e~~~g~~L~~~l~~~----~~~~~~~~i~~ql~~aL~~lH~~g--ivH~Dikp~NIll~  163 (286)
T 3uqc_A          110 AEWIRGGSLQEVADTS----PSPVGAIRAMQSLAAAADAAHRAG--VALSIDHPSRVRVS  163 (286)
T ss_dssp             EECCCEEEHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCSGGGEEEE
T ss_pred             EEecCCCCHHHHHhcC----CChHHHHHHHHHHHHHHHHHHHCC--CccCCCCcccEEEc
Confidence            9999999999999653    355678999999999999999999  99999999999996

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=99.95  E-value=5e-28  Score=201.23  Aligned_cols=137  Identities=21%  Similarity=0.438  Sum_probs=121.5

Q ss_pred             ccCCCCCCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCc
Q psy12580         96 HKGISLNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPD  173 (239)
Q Consensus        96 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~  173 (239)
                      .+.+...+|.+.+.||+|+||.||+|.+.  +..+++|.+.....   ..+.+.+|+.+|+.++||||+++++++...+.
T Consensus       214 ~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~---~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~  290 (495)
T 1opk_A          214 KWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM---EVEEFLKEAAVMKEIKHPNLVQLLGVCTREPP  290 (495)
T ss_dssp             CCBCCGGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSSS---CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred             ccccCHHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCccc---chHHHHHHHHHHHhcCCCCEeeEEEEEecCCc
Confidence            35566778899999999999999999985  56778888864432   24678999999999999999999999999999


Q ss_pred             eEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        174 LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .++||||+++|+|.++++......+++..+..++.||+.||+|||+.+  |+||||||+|||++
T Consensus       291 ~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~--ivHrDlkp~NIll~  352 (495)
T 1opk_A          291 FYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKN--FIHRNLAARNCLVG  352 (495)
T ss_dssp             CEEEEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEEC
T ss_pred             EEEEEEccCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhCC--cccCCCChhhEEEC
Confidence            999999999999999998755456999999999999999999999999  99999999999986

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=99.95  E-value=4.1e-28  Score=194.02  Aligned_cols=132  Identities=20%  Similarity=0.361  Sum_probs=117.4

Q ss_pred             CCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCc----hHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceE
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTP----RVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLV  175 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~----~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~  175 (239)
                      +.|.+.+.||+|+||.||+|...  +..+++|++.......    ...+.+.+|+.++..++||||+++++++...+..+
T Consensus        12 ~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~   91 (361)
T 2yab_A           12 DFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTDVV   91 (361)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEE
T ss_pred             hceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCEEE
Confidence            56889999999999999999873  6778889887654321    13467889999999999999999999999999999


Q ss_pred             EEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        176 VISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       176 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +||||+++|+|.+++....  .+++..+..++.||+.||.|||+.|  |+||||||+|||++
T Consensus        92 lv~e~~~gg~L~~~l~~~~--~l~~~~~~~i~~qi~~aL~~LH~~g--ivHrDlkp~NIll~  149 (361)
T 2yab_A           92 LILELVSGGELFDFLAQKE--SLSEEEATSFIKQILDGVNYLHTKK--IAHFDLKPENIMLL  149 (361)
T ss_dssp             EEEECCCSCBHHHHHTTCS--CCBHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEES
T ss_pred             EEEEcCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCCHHHEEEe
Confidence            9999999999999998765  6999999999999999999999999  99999999999985

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=99.95  E-value=2.1e-28  Score=195.18  Aligned_cols=137  Identities=18%  Similarity=0.264  Sum_probs=116.6

Q ss_pred             cCCCCCCCcccccccCCCCCCceeeccC--CCceeeeeeeeccC-CchHHHHHHHHHhHhhhc-CCCceeeeeeeeeCCC
Q psy12580         97 KGISLNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNC-TPRVSRDFNEEFPKLRIF-SHPNVLPVIGCVNSPP  172 (239)
Q Consensus        97 ~~~~~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~-~~~~~~~~~~e~~~l~~l-~h~~iv~l~~~~~~~~  172 (239)
                      ..+..++|.+.+.||+|+||.||+|...  +..+++|++..... .......+..|..++..+ +||||+++++++...+
T Consensus        18 ~~~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~   97 (353)
T 3txo_A           18 NRLGIDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPD   97 (353)
T ss_dssp             -----CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSS
T ss_pred             CCCchhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCC
Confidence            3456688999999999999999999873  56788898865421 122345677899999988 7999999999999999


Q ss_pred             ceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        173 DLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       173 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .+++||||+++|+|.+++....  .+++..++.++.||+.||+|||+.+  |+||||||+|||++
T Consensus        98 ~~~lv~E~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~g--ivHrDlkp~NILl~  158 (353)
T 3txo_A           98 RLFFVMEFVNGGDLMFHIQKSR--RFDEARARFYAAEIISALMFLHDKG--IIYRDLKLDNVLLD  158 (353)
T ss_dssp             EEEEEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTT--CBCCCCCGGGEEEC
T ss_pred             EEEEEEeCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCC--CcccCCCHHHEEEC
Confidence            9999999999999999998765  6999999999999999999999999  99999999999996

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=99.95  E-value=1.3e-27  Score=191.39  Aligned_cols=132  Identities=20%  Similarity=0.287  Sum_probs=117.5

Q ss_pred             CCCCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEE
Q psy12580         99 ISLNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVV  176 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~l  176 (239)
                      .....|.+.+.||+|+||.||++..  .+..+++|++.......   +.+.+|+.+++.++||||+++++++...+..++
T Consensus        17 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~---~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~l   93 (361)
T 3uc3_A           17 HDSDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAAID---ENVQREIINHRSLRHPNIVRFKEVILTPTHLAI   93 (361)
T ss_dssp             CCTTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTTSC---HHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred             CCCCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCcccc---HHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEE
Confidence            4457899999999999999999987  45678888886543222   557899999999999999999999999999999


Q ss_pred             EEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        177 ISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       177 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||||+++|+|.+++....  .+++..++.++.|++.||.|||+.|  |+||||||+|||++
T Consensus        94 v~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~ql~~~L~~LH~~~--ivH~Dlkp~Nill~  150 (361)
T 3uc3_A           94 IMEYASGGELYERICNAG--RFSEDEARFFFQQLLSGVSYCHSMQ--ICHRDLKLENTLLD  150 (361)
T ss_dssp             EEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTT--CCSCCCCGGGEEEC
T ss_pred             EEEeCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCCHHHEEEc
Confidence            999999999999998755  6999999999999999999999999  99999999999996

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.95  E-value=3.2e-28  Score=200.21  Aligned_cols=136  Identities=24%  Similarity=0.417  Sum_probs=121.5

Q ss_pred             ccCCCCCCCcccccccCCCCCCceeeccCCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCC-ce
Q psy12580         96 HKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP-DL  174 (239)
Q Consensus        96 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~-~~  174 (239)
                      .+.+..++|.+.+.||+|+||.||+|.+.+..+++|++....    ..+.+.+|+.+|++++||||+++++++...+ ..
T Consensus       187 ~~~i~~~~~~~~~~lG~G~fg~V~~~~~~~~~vavK~~~~~~----~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~  262 (450)
T 1k9a_A          187 GWALNMKELKLLQTIGKGEFGDVMLGDYRGNKVAVKCIKNDA----TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGL  262 (450)
T ss_dssp             TCBCCGGGEEEEEEEEECSSEEEEEEEETTEEEEEEEESSCT----TSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCE
T ss_pred             ccccChHHeEEEeeecCcCCeeEEEEEecCCeEEEEEeCCch----HHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCce
Confidence            356777889999999999999999999998999999986532    2367899999999999999999999987665 79


Q ss_pred             EEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        175 VVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       175 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ++||||+++|+|.++++..+...+++..+..++.|++.||+|||+.+  |+||||||+|||++
T Consensus       263 ~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~--ivHrDlkp~Nill~  323 (450)
T 1k9a_A          263 YIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNN--FVHRDLAARNVLVS  323 (450)
T ss_dssp             EEEEECCTTCBHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCCGGGEEEC
T ss_pred             EEEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC--eeCCCCCHhhEEEC
Confidence            99999999999999998765445799999999999999999999999  99999999999996

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=99.95  E-value=1.1e-27  Score=192.31  Aligned_cols=140  Identities=21%  Similarity=0.327  Sum_probs=120.3

Q ss_pred             cccCCCCCCCcccccccCCCCCCceeeccC-------CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeee
Q psy12580         95 RHKGISLNDLSLHTKISSGPNGDTWRGRWQ-------KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGC  167 (239)
Q Consensus        95 ~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~-------~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~  167 (239)
                      ....+...+|.+.+.||+|+||.||+|.+.       +..+++|.+... ........+.+|+.++..++||||++++++
T Consensus        64 ~~~~~~~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~  142 (367)
T 3l9p_A           64 DLKEVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEV-CSEQDELDFLMEALIISKFNHQNIVRCIGV  142 (367)
T ss_dssp             GSCBCCGGGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSS-CCHHHHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             chhhcCHhHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccc-cChhhHHHHHHHHHHHHhCCCCCCCeEEEE
Confidence            445567788999999999999999999853       235777887532 334455678899999999999999999999


Q ss_pred             eeCCCceEEEEeeCCCCCHHHHhhcCC-----CcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        168 VNSPPDLVVISQYMAWGSLYALLHEGA-----GIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       168 ~~~~~~~~lv~e~~~~gsL~~~l~~~~-----~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +......++||||+++|+|.+++....     ...+++..++.++.||+.||.|||+.+  |+||||||+|||++
T Consensus       143 ~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~--ivHrDlkp~NIll~  215 (367)
T 3l9p_A          143 SLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENH--FIHRDIAARNCLLT  215 (367)
T ss_dssp             ECSSSSCEEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEES
T ss_pred             EecCCCCEEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHhCC--eeCCCCChhhEEEe
Confidence            999999999999999999999998632     135899999999999999999999999  99999999999997

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=99.95  E-value=1e-27  Score=187.07  Aligned_cols=130  Identities=18%  Similarity=0.284  Sum_probs=115.9

Q ss_pred             CCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEE
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVIS  178 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~  178 (239)
                      ...|...+.||+|+||.||+|..  .+..+++|.+.......  .+.+.+|+.+++.++||||+++++++...+..++||
T Consensus        19 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~--~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~   96 (297)
T 3fxz_A           19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPK--KELIINEILVMRENKNPNIVNYLDSYLVGDELWVVM   96 (297)
T ss_dssp             GGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSC--HHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             hhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccH--HHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEEE
Confidence            35688889999999999999975  56778888886554332  356889999999999999999999999999999999


Q ss_pred             eeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        179 QYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       179 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||+++|+|.+++....   +++..+..++.|++.||.|||+.|  |+||||||+|||++
T Consensus        97 e~~~~~~L~~~~~~~~---~~~~~~~~~~~qi~~~l~~lH~~~--i~H~Dlkp~Nil~~  150 (297)
T 3fxz_A           97 EYLAGGSLTDVVTETC---MDEGQIAAVCRECLQALEFLHSNQ--VIHRDIKSDNILLG  150 (297)
T ss_dssp             ECCTTCBHHHHHHHSC---CCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEEC
T ss_pred             ECCCCCCHHHHHhhcC---CCHHHHHHHHHHHHHHHHHHHhCC--ceeCCCCHHHEEEC
Confidence            9999999999998754   899999999999999999999999  99999999999986

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=99.95  E-value=4.2e-28  Score=190.93  Aligned_cols=135  Identities=21%  Similarity=0.328  Sum_probs=118.3

Q ss_pred             CCCCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccC-CchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceE
Q psy12580         99 ISLNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNC-TPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLV  175 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~  175 (239)
                      ...++|.+.+.||+|+||.||++..  .+..+++|++..... .....+.+.+|..+++.++||||+++++++...+..+
T Consensus         3 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~   82 (318)
T 1fot_A            3 YSLQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIF   82 (318)
T ss_dssp             CCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEE
T ss_pred             CChHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEE
Confidence            4457889999999999999999987  456788898865421 1123456778999999999999999999999999999


Q ss_pred             EEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        176 VISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       176 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +||||+++|+|.+++....  .+++..+..++.||+.||+|||+.|  |+||||||+|||++
T Consensus        83 lv~e~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~~--ivHrDlkp~NIll~  140 (318)
T 1fot_A           83 MIMDYIEGGELFSLLRKSQ--RFPNPVAKFYAAEVCLALEYLHSKD--IIYRDLKPENILLD  140 (318)
T ss_dssp             EEECCCCSCBHHHHHHHTS--SCCHHHHHHHHHHHHHHHHHHHTTT--EECCCCCGGGEEEC
T ss_pred             EEEeCCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCC--ccccCCChheEEEc
Confidence            9999999999999998866  6999999999999999999999999  99999999999996

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=99.95  E-value=2.9e-28  Score=196.27  Aligned_cols=138  Identities=22%  Similarity=0.370  Sum_probs=121.3

Q ss_pred             ccCCCCCCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCc
Q psy12580         96 HKGISLNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPD  173 (239)
Q Consensus        96 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~  173 (239)
                      .+.++.++|.+.+.||+|+||.||+|.+.  +..+++|.+... ........+.+|+.+|+.++||||+++++++...+.
T Consensus       108 ~~~~~~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~  186 (377)
T 3cbl_A          108 KWVLNHEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRET-LPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQP  186 (377)
T ss_dssp             TTBCCGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTT-SCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSS
T ss_pred             ccEEchHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEcccc-CCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCC
Confidence            45567788999999999999999999984  567788887533 334445678899999999999999999999999999


Q ss_pred             eEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        174 LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .++||||+++|+|.++++... ..+++..+..++.|++.||+|||+.+  |+||||||+|||++
T Consensus       187 ~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~LH~~~--ivHrDlkp~Nil~~  247 (377)
T 3cbl_A          187 IYIVMELVQGGDFLTFLRTEG-ARLRVKTLLQMVGDAAAGMEYLESKC--CIHRDLAARNCLVT  247 (377)
T ss_dssp             CEEEEECCTTCBHHHHHHHHG-GGCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEEC
T ss_pred             cEEEEEcCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCC--cCCcccCHHHEEEc
Confidence            999999999999999998644 25899999999999999999999999  99999999999986

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=99.95  E-value=8.7e-28  Score=187.26  Aligned_cols=133  Identities=12%  Similarity=0.239  Sum_probs=118.6

Q ss_pred             CCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccC-CchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEE
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNC-TPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVI  177 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv  177 (239)
                      ...|.+.+.||+|+||.||++..  .+..+++|.+..... .....+.+.+|+.++..++||||+++++++...+..++|
T Consensus        10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv   89 (294)
T 4eqm_A           10 NERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLV   89 (294)
T ss_dssp             ETTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEEE
T ss_pred             hccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEEE
Confidence            36788999999999999999975  457788888865433 334457789999999999999999999999999999999


Q ss_pred             EeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        178 SQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       178 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |||+++|+|.+++....  .+++..+..++.|++.||.|||+.+  |+||||||+|||++
T Consensus        90 ~e~~~g~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~--i~H~Dlkp~Nil~~  145 (294)
T 4eqm_A           90 MEYIEGPTLSEYIESHG--PLSVDTAINFTNQILDGIKHAHDMR--IVHRDIKPQNILID  145 (294)
T ss_dssp             EECCCSCBHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCGGGEEEC
T ss_pred             EeCCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCCHHHEEEC
Confidence            99999999999998765  6899999999999999999999999  99999999999986

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=99.95  E-value=1.1e-27  Score=190.66  Aligned_cols=135  Identities=16%  Similarity=0.217  Sum_probs=119.2

Q ss_pred             CCCCCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCC-chHHHHHHHHHhHhhhc-CCCceeeeeeeeeCCCce
Q psy12580         99 ISLNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCT-PRVSRDFNEEFPKLRIF-SHPNVLPVIGCVNSPPDL  174 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~-~~~~~~~~~e~~~l~~l-~h~~iv~l~~~~~~~~~~  174 (239)
                      +..++|.+.+.||+|+||.||++...  +..+++|++...... ....+.+.+|..++..+ +||||+++++++...+..
T Consensus         6 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~   85 (345)
T 3a8x_A            6 LGLQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRL   85 (345)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEE
T ss_pred             CchhheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEE
Confidence            45578899999999999999999874  566788988765433 33446688899999987 899999999999999999


Q ss_pred             EEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        175 VVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       175 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ++||||+++|+|.+++....  .+++..++.++.||+.||+|||+.+  |+||||||+|||++
T Consensus        86 ~lv~e~~~gg~L~~~l~~~~--~l~~~~~~~~~~qi~~aL~~LH~~~--ivHrDlkp~NIll~  144 (345)
T 3a8x_A           86 FFVIEYVNGGDLMFHMQRQR--KLPEEHARFYSAEISLALNYLHERG--IIYRDLKLDNVLLD  144 (345)
T ss_dssp             EEEECCCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTT--CBCCCCCGGGEEEC
T ss_pred             EEEEeCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCC--ceecCCCHHHEEEC
Confidence            99999999999999998765  6999999999999999999999999  99999999999996

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=99.95  E-value=1.2e-27  Score=192.14  Aligned_cols=137  Identities=22%  Similarity=0.333  Sum_probs=117.6

Q ss_pred             CCCCCCCcccccccCCCCCCceeeccC---------CCceeeeeeeeccCCchHHHHHHHHHhHhhhc-CCCceeeeeee
Q psy12580         98 GISLNDLSLHTKISSGPNGDTWRGRWQ---------KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIF-SHPNVLPVIGC  167 (239)
Q Consensus        98 ~~~~~~~~~~~~ig~g~~g~v~~~~~~---------~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~l~~~  167 (239)
                      .+..++|.+.+.||+|+||.||+|.+.         +..+++|++... ......+.+.+|+.+++.+ +||||++++++
T Consensus        77 ~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~  155 (370)
T 2psq_A           77 EFPRDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDD-ATEKDLSDLVSEMEMMKMIGKHKNIINLLGA  155 (370)
T ss_dssp             BCCGGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTT-CBHHHHHHHHHHHHHHHHSCCCTTBCCEEEE
T ss_pred             cccHHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCC-cCHHHHHHHHHHHHHHHHhcCCCCEeeEEEE
Confidence            455678899999999999999999752         124677877543 2334456789999999999 89999999999


Q ss_pred             eeCCCceEEEEeeCCCCCHHHHhhcCC--------------CcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCcc
Q psy12580        168 VNSPPDLVVISQYMAWGSLYALLHEGA--------------GIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRH  233 (239)
Q Consensus       168 ~~~~~~~~lv~e~~~~gsL~~~l~~~~--------------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~N  233 (239)
                      +...+.+++||||+++|+|.+++....              ...+++..+..++.||+.||+|||+.+  |+||||||+|
T Consensus       156 ~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~--ivHrDlkp~N  233 (370)
T 2psq_A          156 CTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQK--CIHRDLAARN  233 (370)
T ss_dssp             ECSSSSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCCGGG
T ss_pred             EccCCCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCC--eeccccchhh
Confidence            999999999999999999999998643              124789999999999999999999999  9999999999


Q ss_pred             ceee
Q psy12580        234 VMVY  237 (239)
Q Consensus       234 ill~  237 (239)
                      ||++
T Consensus       234 Ill~  237 (370)
T 2psq_A          234 VLVT  237 (370)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9996

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=99.95  E-value=6.1e-28  Score=194.85  Aligned_cols=136  Identities=15%  Similarity=0.215  Sum_probs=117.2

Q ss_pred             CCCCCCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCc-hHHHHHHHHHhHhhhc-CCCceeeeeeeeeCCCc
Q psy12580         98 GISLNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTP-RVSRDFNEEFPKLRIF-SHPNVLPVIGCVNSPPD  173 (239)
Q Consensus        98 ~~~~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~-~~~~~~~~e~~~l~~l-~h~~iv~l~~~~~~~~~  173 (239)
                      .+..++|.+.+.||+|+||.||+++..  +..+++|++....... .....+..|..++.++ +||||+++++++...+.
T Consensus        48 ~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~  127 (396)
T 4dc2_A           48 SLGLQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESR  127 (396)
T ss_dssp             -CCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSE
T ss_pred             CCChhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCE
Confidence            355678999999999999999999874  4567888887654332 2234577899999887 89999999999999999


Q ss_pred             eEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        174 LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +++||||+++|+|.+++....  .+++..++.++.||+.||+|||+.+  |+||||||+|||++
T Consensus       128 ~~lV~E~~~gg~L~~~l~~~~--~l~~~~~~~~~~qi~~aL~~LH~~g--ivHrDLKp~NILl~  187 (396)
T 4dc2_A          128 LFFVIEYVNGGDLMFHMQRQR--KLPEEHARFYSAEISLALNYLHERG--IIYRDLKLDNVLLD  187 (396)
T ss_dssp             EEEEEECCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTT--CBCCCCCGGGEEEC
T ss_pred             EEEEEEcCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCC--EEeccCCHHHEEEC
Confidence            999999999999999998765  6999999999999999999999999  99999999999996

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=99.95  E-value=1.5e-27  Score=187.24  Aligned_cols=134  Identities=29%  Similarity=0.428  Sum_probs=118.5

Q ss_pred             CCCCCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEE
Q psy12580         99 ISLNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVV  176 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~l  176 (239)
                      +..++|.+.+.||+|+||.||++.+.  +..+++|.+..  ......+.+.+|+.+++.++||||+++++++...+..++
T Consensus         7 ~~~~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~--~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~l   84 (310)
T 3s95_A            7 FRPSDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIR--FDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNF   84 (310)
T ss_dssp             ECGGGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESC--CCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEE
T ss_pred             eChhHeeccceecCCCCEEEEEEEECCCCcEEEEEEecc--CCHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEE
Confidence            44578889999999999999999874  56667777643  345556789999999999999999999999999999999


Q ss_pred             EEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        177 ISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       177 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||||+++|+|.++++.... .+++..+..++.|+++||+|||+.+  |+||||||+|||++
T Consensus        85 v~e~~~~~~L~~~l~~~~~-~~~~~~~~~i~~qi~~al~~lH~~~--ivH~dlkp~Nil~~  142 (310)
T 3s95_A           85 ITEYIKGGTLRGIIKSMDS-QYPWSQRVSFAKDIASGMAYLHSMN--IIHRDLNSHNCLVR  142 (310)
T ss_dssp             EEECCTTCBHHHHHHHCCT-TSCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSTTSEEEC
T ss_pred             EEEecCCCcHHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHhCC--ccCCCCCcCeEEEC
Confidence            9999999999999987542 5899999999999999999999999  99999999999986

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=99.95  E-value=8.2e-28  Score=189.72  Aligned_cols=132  Identities=25%  Similarity=0.377  Sum_probs=116.0

Q ss_pred             CCCCCCCcccccccCCCCCCceeeccCCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCC----c
Q psy12580         98 GISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP----D  173 (239)
Q Consensus        98 ~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~----~  173 (239)
                      .++..+|++.+.||+|+||.||+|.+.+..+++|++...   .........|+.++..++||||+++++++....    .
T Consensus        20 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~   96 (322)
T 3soc_A           20 YFQSMPLQLLEVKARGRFGCVWKAQLLNEYVAVKIFPIQ---DKQSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVD   96 (322)
T ss_dssp             EETTEEEEEEEEEECSTTCEEEEEEETTEEEEEEEECGG---GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEE
T ss_pred             ccchhhchhhheecccCceEEEEEEECCCEEEEEEeecC---chHHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCce
Confidence            356678999999999999999999999888999998543   223345667899999999999999999997654    4


Q ss_pred             eEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcC----------CCCcccCCCCCccceee
Q psy12580        174 LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSL----------ERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~----------~~~ivHrdikp~Nill~  237 (239)
                      +++||||+++|+|.++++...   +++..++.++.|++.||.|||+.          +  |+||||||+|||++
T Consensus        97 ~~lv~e~~~~g~L~~~l~~~~---~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~--ivH~Dlkp~Nill~  165 (322)
T 3soc_A           97 LWLITAFHEKGSLSDFLKANV---VSWNELCHIAETMARGLAYLHEDIPGLKDGHKPA--ISHRDIKSKNVLLK  165 (322)
T ss_dssp             EEEEEECCTTCBHHHHHHHCC---BCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECE--EECSCCSGGGEEEC
T ss_pred             EEEEEecCCCCCHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhccccccccCCC--EEeCCCChHhEEEC
Confidence            799999999999999998754   89999999999999999999998          8  99999999999986

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=99.95  E-value=1.1e-27  Score=189.16  Aligned_cols=137  Identities=28%  Similarity=0.431  Sum_probs=119.2

Q ss_pred             cCCCCCCCcccccccCCCCCCceeeccC--C---CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCC
Q psy12580         97 KGISLNDLSLHTKISSGPNGDTWRGRWQ--K---NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSP  171 (239)
Q Consensus        97 ~~~~~~~~~~~~~ig~g~~g~v~~~~~~--~---~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~  171 (239)
                      ..+....|.+.+.||+|+||.||+|.+.  +   ..+++|.+... ......+.+.+|+.+++.++||||+++++++...
T Consensus        44 ~~~~~~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~  122 (325)
T 3kul_A           44 REIEASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAG-YTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRG  122 (325)
T ss_dssp             CBCCGGGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTT-CCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGG
T ss_pred             cccChhHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCC-CCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeC
Confidence            3456678899999999999999999873  2   23777887543 2344557799999999999999999999999998


Q ss_pred             CceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        172 PDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       172 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +..++||||+++|+|.++++...+ .+++..+..++.|++.||.|||+.+  |+||||||+|||++
T Consensus       123 ~~~~lv~e~~~~~~L~~~l~~~~~-~~~~~~~~~i~~qi~~~L~~LH~~~--ivH~Dlkp~NIll~  185 (325)
T 3kul_A          123 RLAMIVTEYMENGSLDTFLRTHDG-QFTIMQLVGMLRGVGAGMRYLSDLG--YVHRDLAARNVLVD  185 (325)
T ss_dssp             GCCEEEEECCTTCBHHHHHHTTTT-CSCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEEC
T ss_pred             CccEEEeeCCCCCcHHHHHHhccc-CCCHHHHHHHHHHHHHHHHHHHHCC--eeCCCCCcceEEEC
Confidence            899999999999999999976542 5999999999999999999999999  99999999999986

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=99.95  E-value=1.2e-27  Score=185.84  Aligned_cols=135  Identities=17%  Similarity=0.320  Sum_probs=117.9

Q ss_pred             CCCCCCCcccccccCCCCCCceeeccCC---------CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeee
Q psy12580         98 GISLNDLSLHTKISSGPNGDTWRGRWQK---------NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCV  168 (239)
Q Consensus        98 ~~~~~~~~~~~~ig~g~~g~v~~~~~~~---------~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~  168 (239)
                      ++..++|.+.+.||+|+||.||+|....         ..+++|.+....  ....+.+.+|+.+++.++||||+++++++
T Consensus         4 ~i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~~   81 (289)
T 4fvq_A            4 KIRNEDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAH--RNYSESFFEAASMMSKLSHKHLVLNYGVC   81 (289)
T ss_dssp             BCCGGGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGG--GGGHHHHHHHHHHHHTSCCTTBCCEEEEE
T ss_pred             EechhHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhccccc--HHHHHHHHHHHHHHHhCCCCCEeEEEEEE
Confidence            4566788999999999999999998743         246777775432  33456789999999999999999999999


Q ss_pred             eCCCceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        169 NSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       169 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ..++..++||||+++|+|.+++.... ..+++..+..++.|++.||.|||+.+  |+||||||+|||++
T Consensus        82 ~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~L~~LH~~~--ivH~Dlkp~NIll~  147 (289)
T 4fvq_A           82 VCGDENILVQEFVKFGSLDTYLKKNK-NCINILWKLEVAKQLAAAMHFLEENT--LIHGNVCAKNILLI  147 (289)
T ss_dssp             CCTTCCEEEEECCTTCBHHHHHHHTG-GGCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCGGGEEEE
T ss_pred             EeCCCCEEEEECCCCCCHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHhhCC--eECCCcCcceEEEe
Confidence            99999999999999999999998765 24899999999999999999999999  99999999999996

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=99.95  E-value=2e-27  Score=184.18  Aligned_cols=137  Identities=24%  Similarity=0.393  Sum_probs=117.6

Q ss_pred             cccCCCCCCCcccccccCCCCCCceeeccCCC-ceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCc
Q psy12580         95 RHKGISLNDLSLHTKISSGPNGDTWRGRWQKN-DIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPD  173 (239)
Q Consensus        95 ~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~-~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~  173 (239)
                      ..+.+..++|.+.+.||+|+||.||++.+.++ .+++|++......   .+.+.+|+.++..++||||+++++++...+.
T Consensus        17 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~---~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~   93 (283)
T 3gen_A           17 GSWEIDPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMS---EDEFIEEAKVMMNLSHEKLVQLYGVCTKQRP   93 (283)
T ss_dssp             CTTBCCGGGEEEEEECC---CEEEEEEEETTTEEEEEEEECTTSBC---HHHHHHHHHHHHTCCCTTBCCEEEEECSSSS
T ss_pred             CCccCCHHHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCCCC---HHHHHHHHHHHhcCCCCCEeeEEEEEecCCC
Confidence            34567778999999999999999999988654 6777888654332   3668899999999999999999999999999


Q ss_pred             eEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        174 LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .++||||+++|+|.+++.... ..+++..++.++.|++.||.|||+.+  |+||||||+|||++
T Consensus        94 ~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~~--i~H~dikp~Nili~  154 (283)
T 3gen_A           94 IFIITEYMANGCLLNYLREMR-HRFQTQQLLEMCKDVCEAMEYLESKQ--FLHRDLAARNCLVN  154 (283)
T ss_dssp             EEEEECCCTTCBHHHHHHCGG-GCCCHHHHHHHHHHHHHHHHHHHHTT--CCCSSCSGGGEEEC
T ss_pred             eEEEEeccCCCcHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHHCC--ccCCCCccceEEEc
Confidence            999999999999999998743 25899999999999999999999999  99999999999986

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=99.95  E-value=2.2e-27  Score=188.72  Aligned_cols=138  Identities=23%  Similarity=0.385  Sum_probs=120.1

Q ss_pred             cCCCCCCCcccccccCCCCCCceeeccCC-------CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeee
Q psy12580         97 KGISLNDLSLHTKISSGPNGDTWRGRWQK-------NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVN  169 (239)
Q Consensus        97 ~~~~~~~~~~~~~ig~g~~g~v~~~~~~~-------~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~  169 (239)
                      ..+..++|.+.+.||+|+||.||+|.+.+       ..+++|++... ......+.+.+|+.+++.++||||+++++++.
T Consensus        42 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~  120 (343)
T 1luf_A           42 LEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEE-ASADMQADFQREAALMAEFDNPNIVKLLGVCA  120 (343)
T ss_dssp             TBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTT-CCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC
T ss_pred             eEecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccc-cCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEc
Confidence            45667889999999999999999998753       56777887643 23445577899999999999999999999999


Q ss_pred             CCCceEEEEeeCCCCCHHHHhhcCC----------------------CcccCHHHHHHHHHHHHHHhhhhhcCCCCcccC
Q psy12580        170 SPPDLVVISQYMAWGSLYALLHEGA----------------------GIVVDFAQALRFAVDVARGMAFLHSLERIIPQY  227 (239)
Q Consensus       170 ~~~~~~lv~e~~~~gsL~~~l~~~~----------------------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHr  227 (239)
                      ..+..++||||+++|+|.+++....                      ...+++..++.++.|+++||.|||+.+  |+||
T Consensus       121 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~~~--ivH~  198 (343)
T 1luf_A          121 VGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERK--FVHR  198 (343)
T ss_dssp             SSSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHTT--CCCS
T ss_pred             cCCceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhCC--eecC
Confidence            9999999999999999999998642                      136899999999999999999999999  9999


Q ss_pred             CCCCccceee
Q psy12580        228 QLNSRHVMVY  237 (239)
Q Consensus       228 dikp~Nill~  237 (239)
                      ||||+|||++
T Consensus       199 Dlkp~NIl~~  208 (343)
T 1luf_A          199 DLATRNCLVG  208 (343)
T ss_dssp             CCSGGGEEEC
T ss_pred             CCCcceEEEC
Confidence            9999999986

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=99.95  E-value=2.2e-27  Score=186.48  Aligned_cols=139  Identities=23%  Similarity=0.434  Sum_probs=119.7

Q ss_pred             ccCCCCCCCcccccccCCCCCCceeecc-------CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeee
Q psy12580         96 HKGISLNDLSLHTKISSGPNGDTWRGRW-------QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCV  168 (239)
Q Consensus        96 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~-------~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~  168 (239)
                      .+.+...+|.+.+.||+|+||.||+|..       .+..+++|++... ......+.+.+|+.+++.++||||+++++++
T Consensus        17 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~   95 (314)
T 2ivs_A           17 KWEFPRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKEN-ASPSELRDLLSEFNVLKQVNHPHVIKLYGAC   95 (314)
T ss_dssp             TTBCCGGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTT-CCHHHHHHHHHHHHHHTTCCCTTBCCEEEEE
T ss_pred             ccccchhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCC-CCHHHHHHHHHHHHHHhhCCCCceeeEEEEE
Confidence            3456678899999999999999999975       2255777877543 3344557789999999999999999999999


Q ss_pred             eCCCceEEEEeeCCCCCHHHHhhcCCC----------------------cccCHHHHHHHHHHHHHHhhhhhcCCCCccc
Q psy12580        169 NSPPDLVVISQYMAWGSLYALLHEGAG----------------------IVVDFAQALRFAVDVARGMAFLHSLERIIPQ  226 (239)
Q Consensus       169 ~~~~~~~lv~e~~~~gsL~~~l~~~~~----------------------~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivH  226 (239)
                      ...+..++||||+++|+|.+++.....                      ..+++..++.++.|+++||.|||+.+  |+|
T Consensus        96 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~--ivH  173 (314)
T 2ivs_A           96 SQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEMK--LVH  173 (314)
T ss_dssp             CSSSSCEEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHHTT--EEC
T ss_pred             ecCCceEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHHCC--Ccc
Confidence            999999999999999999999986432                      24899999999999999999999999  999


Q ss_pred             CCCCCccceee
Q psy12580        227 YQLNSRHVMVY  237 (239)
Q Consensus       227 rdikp~Nill~  237 (239)
                      |||||+|||++
T Consensus       174 ~dikp~NIli~  184 (314)
T 2ivs_A          174 RDLAARNILVA  184 (314)
T ss_dssp             CCCSGGGEEEE
T ss_pred             cccchheEEEc
Confidence            99999999996

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=99.95  E-value=8.7e-28  Score=190.99  Aligned_cols=136  Identities=18%  Similarity=0.278  Sum_probs=116.4

Q ss_pred             CCCCCCCcccccccCCCCCCceeeccC--CCceeeeeeeeccC-CchHHHHHHHHHhHhhhc-CCCceeeeeeeeeCCCc
Q psy12580         98 GISLNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNC-TPRVSRDFNEEFPKLRIF-SHPNVLPVIGCVNSPPD  173 (239)
Q Consensus        98 ~~~~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~-~~~~~~~~~~e~~~l~~l-~h~~iv~l~~~~~~~~~  173 (239)
                      .+..++|.+.+.||+|+||.||+|...  +..+++|++..... .......+..|..++..+ +||||+++++++...+.
T Consensus        13 ~~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~   92 (345)
T 1xjd_A           13 KLKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKEN   92 (345)
T ss_dssp             ---CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSE
T ss_pred             CCChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCE
Confidence            356688999999999999999999874  56678888865421 112235577888898877 89999999999999999


Q ss_pred             eEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        174 LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .++||||+++|+|.+++....  .+++..+..++.||+.||+|||+.|  |+||||||+|||++
T Consensus        93 ~~lv~E~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~~--ivHrDlkp~NIll~  152 (345)
T 1xjd_A           93 LFFVMEYLNGGDLMYHIQSCH--KFDLSRATFYAAEIILGLQFLHSKG--IVYRDLKLDNILLD  152 (345)
T ss_dssp             EEEEEECCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTT--CBCCCCCGGGEEEC
T ss_pred             EEEEEeCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCC--eEeCCCChhhEEEC
Confidence            999999999999999998755  6899999999999999999999999  99999999999996

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=99.95  E-value=2.1e-27  Score=187.31  Aligned_cols=130  Identities=18%  Similarity=0.300  Sum_probs=114.9

Q ss_pred             CCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEe
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQ  179 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e  179 (239)
                      +.|.+.+.||+|+||.||+|...  +..+++|.+...   ......+.+|+.+++.++||||+++++++...+..++|||
T Consensus         5 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~---~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e   81 (321)
T 1tki_A            5 EKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVK---GTDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFE   81 (321)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCC---THHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEEC
T ss_pred             hceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecC---cccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEEEE
Confidence            57889999999999999999874  456777877533   2334568899999999999999999999999999999999


Q ss_pred             eCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       180 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |+++|+|.+++.... ..+++..+..++.|++.||.|||+.|  |+||||||+|||++
T Consensus        82 ~~~g~~L~~~l~~~~-~~~~~~~~~~i~~qi~~al~~lH~~g--ivH~Dlkp~NIl~~  136 (321)
T 1tki_A           82 FISGLDIFERINTSA-FELNEREIVSYVHQVCEALQFLHSHN--IGHFDIRPENIIYQ  136 (321)
T ss_dssp             CCCCCBHHHHHTSSS-CCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEES
T ss_pred             eCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCC--CCcCCCCHHHEEEc
Confidence            999999999997654 25899999999999999999999999  99999999999986

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=99.95  E-value=7.5e-28  Score=198.27  Aligned_cols=137  Identities=20%  Similarity=0.399  Sum_probs=119.3

Q ss_pred             cccCCCCCCCcccccccCCCCCCceeeccC-CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCc
Q psy12580         95 RHKGISLNDLSLHTKISSGPNGDTWRGRWQ-KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPD  173 (239)
Q Consensus        95 ~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~  173 (239)
                      ..+.+..++|.+.+.||+|+||.||+|.++ +..+++|.+....   ...+.+.+|+.+|+.++||||+++++++. .+.
T Consensus       181 ~~~~i~~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~h~~iv~l~~~~~-~~~  256 (454)
T 1qcf_A          181 DAWEIPRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGS---MSVEAFLAEANVMKTLQHDKLVKLHAVVT-KEP  256 (454)
T ss_dssp             TCSBCCGGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTS---BCHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSS
T ss_pred             cceeechHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCCC---ccHHHHHHHHHHHhhCCCCCEeeEEEEEe-CCc
Confidence            345677788999999999999999999985 4667888886533   23467999999999999999999999986 557


Q ss_pred             eEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        174 LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .++||||+++|+|.++++...+..+++..+..++.||+.||+|||+.+  |+||||||+|||++
T Consensus       257 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~--ivHrDlkp~Nill~  318 (454)
T 1qcf_A          257 IYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRN--YIHRDLRAANILVS  318 (454)
T ss_dssp             CEEEECCCTTCBHHHHHHSHHHHTCCHHHHHHHHHHHHHHHHHHHHTT--CCCSSCSGGGEEEC
T ss_pred             cEEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCC--ccCCCCCHHHEEEC
Confidence            899999999999999998654345889999999999999999999999  99999999999996

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=99.95  E-value=2.6e-27  Score=187.19  Aligned_cols=132  Identities=23%  Similarity=0.376  Sum_probs=116.6

Q ss_pred             CCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCc----hHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceE
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTP----RVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLV  175 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~----~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~  175 (239)
                      +.|.+.+.||+|+||.||+|...  +..+++|++.......    ...+.+.+|+.+++.++||||+++++++...+..+
T Consensus        11 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~   90 (326)
T 2y0a_A           11 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVI   90 (326)
T ss_dssp             HHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             cceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEE
Confidence            45788899999999999999873  5778888886643321    13467889999999999999999999999999999


Q ss_pred             EEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        176 VISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       176 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +||||+++|+|.+++....  .+++..+..++.|++.||.|||+.+  |+||||||+|||++
T Consensus        91 lv~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~al~~lH~~~--ivH~Dlkp~NIll~  148 (326)
T 2y0a_A           91 LILELVAGGELFDFLAEKE--SLTEEEATEFLKQILNGVYYLHSLQ--IAHFDLKPENIMLL  148 (326)
T ss_dssp             EEEECCCSCBHHHHHTTSS--CCBHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEES
T ss_pred             EEEEcCCCCCHHHHHHhcC--CcCHHHHHHHHHHHHHHHHHHHHCC--eEcCCCCHHHEEEe
Confidence            9999999999999998765  6999999999999999999999999  99999999999985

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=99.95  E-value=3.5e-28  Score=197.18  Aligned_cols=136  Identities=18%  Similarity=0.187  Sum_probs=117.2

Q ss_pred             cCCCCCCCcccccccCCCCCCceeeccC--CCceeeeeeeeccC-CchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCc
Q psy12580         97 KGISLNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNC-TPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPD  173 (239)
Q Consensus        97 ~~~~~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~  173 (239)
                      ..+..++|.+.+.||+|+||.||+|...  +..+++|++..... .......+.+|..++..++||||+++++++...+.
T Consensus        64 ~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~  143 (410)
T 3v8s_A           64 LRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDRY  143 (410)
T ss_dssp             HSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEECSSE
T ss_pred             cccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEECCE
Confidence            4466788999999999999999999874  45677788864321 11112447789999999999999999999999999


Q ss_pred             eEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        174 LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +++||||+++|+|.+++...   .+++..++.++.||+.||+|||+.+  |+||||||+|||+|
T Consensus       144 ~~lV~E~~~gg~L~~~l~~~---~~~e~~~~~~~~qi~~aL~~LH~~g--ivHrDLKp~NILl~  202 (410)
T 3v8s_A          144 LYMVMEYMPGGDLVNLMSNY---DVPEKWARFYTAEVVLALDAIHSMG--FIHRDVKPDNMLLD  202 (410)
T ss_dssp             EEEEECCCTTEEHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEEC
T ss_pred             EEEEEeCCCCCcHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHCC--eEeccCCHHHeeEC
Confidence            99999999999999999875   3899999999999999999999999  99999999999996

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=99.95  E-value=1.6e-27  Score=183.30  Aligned_cols=134  Identities=23%  Similarity=0.436  Sum_probs=118.7

Q ss_pred             CCCCCCCcccccccCCCCCCceeeccCCC-ceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEE
Q psy12580         98 GISLNDLSLHTKISSGPNGDTWRGRWQKN-DIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVV  176 (239)
Q Consensus        98 ~~~~~~~~~~~~ig~g~~g~v~~~~~~~~-~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~l  176 (239)
                      .+..++|.+.+.||+|+||.||+|.+.++ .+++|++......   .+.+.+|+.++..++||||+++++++...+..++
T Consensus         4 ~l~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~---~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~l   80 (268)
T 3sxs_A            4 ELKREEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSMS---EDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYI   80 (268)
T ss_dssp             BCCGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTTBC---HHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEE
T ss_pred             EechhheeeeeeeccCCCceEEEEEecCceeEEEEEeccCCCc---HHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEE
Confidence            45667889999999999999999988654 6777888654332   3568899999999999999999999999999999


Q ss_pred             EEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        177 ISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       177 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||||+++++|.+++.... ..+++..++.++.|++.||.|||+.+  |+||||||+|||++
T Consensus        81 v~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~~--i~H~dikp~Nil~~  138 (268)
T 3sxs_A           81 VTEYISNGCLLNYLRSHG-KGLEPSQLLEMCYDVCEGMAFLESHQ--FIHRDLAARNCLVD  138 (268)
T ss_dssp             EEECCTTCBHHHHHHHHG-GGCCHHHHHHHHHHHHHHHHHHHHTT--EEESSCSGGGEEEC
T ss_pred             EEEccCCCcHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHHHHHCC--eecCCcCcceEEEC
Confidence            999999999999998754 25899999999999999999999999  99999999999986

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=99.95  E-value=2e-27  Score=185.06  Aligned_cols=132  Identities=16%  Similarity=0.272  Sum_probs=116.0

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEe
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQ  179 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e  179 (239)
                      ++|.+.+.||+|+||.||+|..  .+..+++|++............+.+|+.+++.++||||+++++++...+..++|||
T Consensus         2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   81 (292)
T 3o0g_A            2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE   81 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEEEe
Confidence            4688899999999999999987  35678889887665555556778899999999999999999999999999999999


Q ss_pred             eCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       180 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |+++ ++.+++....+ .+++..++.++.|++.||+|||+.|  |+||||||+|||++
T Consensus        82 ~~~~-~l~~~~~~~~~-~l~~~~~~~~~~ql~~~l~~lH~~~--ivH~dikp~Nil~~  135 (292)
T 3o0g_A           82 FCDQ-DLKKYFDSCNG-DLDPEIVKSFLFQLLKGLGFCHSRN--VLHRDLKPQNLLIN  135 (292)
T ss_dssp             CCSE-EHHHHHHHTTT-CCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEEC
T ss_pred             cCCC-CHHHHHHhCCC-CCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCCHHHEEEc
Confidence            9976 67777665432 6999999999999999999999999  99999999999986

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=99.95  E-value=5.4e-28  Score=197.54  Aligned_cols=138  Identities=14%  Similarity=0.135  Sum_probs=118.3

Q ss_pred             cCCCCCCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCC-chHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCc
Q psy12580         97 KGISLNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCT-PRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPD  173 (239)
Q Consensus        97 ~~~~~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~  173 (239)
                      ..+..++|.+.+.||+|+||.||+|...  +..+++|++...... ......+..|..++..++||||+++++++...+.
T Consensus        69 ~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~~~  148 (437)
T 4aw2_A           69 MRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQDDNN  148 (437)
T ss_dssp             HSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEECSSE
T ss_pred             ccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCE
Confidence            4466788999999999999999999874  356777888643211 1122347889999999999999999999999999


Q ss_pred             eEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        174 LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +++||||+++|+|.+++.... ..+++..++.++.|++.||+|||+.+  ||||||||+|||||
T Consensus       149 ~~lV~Ey~~gg~L~~~l~~~~-~~l~e~~~~~~~~qi~~aL~~LH~~g--iiHrDLKp~NILl~  209 (437)
T 4aw2_A          149 LYLVMDYYVGGDLLTLLSKFE-DRLPEEMARFYLAEMVIAIDSVHQLH--YVHRDIKPDNILMD  209 (437)
T ss_dssp             EEEEECCCTTCBHHHHHHTTT-TCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEEC
T ss_pred             EEEEEecCCCCcHHHHHHHcc-CCCCHHHHHHHHHHHHHHHHHHHhCC--eEecccCHHHeeEc
Confidence            999999999999999998743 26999999999999999999999999  99999999999997

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=99.95  E-value=2.1e-27  Score=186.49  Aligned_cols=133  Identities=18%  Similarity=0.292  Sum_probs=114.4

Q ss_pred             CCCCcccccccCCCCCCceeecc-CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEe
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRW-QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQ  179 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e  179 (239)
                      .++|.+.+.||+|+||.||+|.. .+..+++|++............+.+|+.+++.++||||+++++++...+..++|||
T Consensus        20 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e   99 (311)
T 3niz_A           20 MEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTLVFE   99 (311)
T ss_dssp             SCEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEEEEEE
T ss_pred             HhhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEEEEEc
Confidence            47789999999999999999988 45667788886655444455778899999999999999999999999999999999


Q ss_pred             eCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       180 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |+++ +|.+++.... ..+++..+..++.|++.||.|||+.|  |+||||||+|||++
T Consensus       100 ~~~~-~l~~~~~~~~-~~~~~~~~~~~~~qi~~~l~~LH~~~--ivH~Dikp~NIl~~  153 (311)
T 3niz_A          100 FMEK-DLKKVLDENK-TGLQDSQIKIYLYQLLRGVAHCHQHR--ILHRDLKPQNLLIN  153 (311)
T ss_dssp             CCSE-EHHHHHHTCT-TCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEEC
T ss_pred             CCCC-CHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCchHhEEEC
Confidence            9985 8888887754 25899999999999999999999999  99999999999986

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=99.95  E-value=1.1e-27  Score=190.94  Aligned_cols=135  Identities=16%  Similarity=0.241  Sum_probs=118.5

Q ss_pred             CCCCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccC-CchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceE
Q psy12580         99 ISLNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNC-TPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLV  175 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~  175 (239)
                      ...++|.+.+.||+|+||.||++..  .+..+++|++..... .....+.+.+|+.++..++||||+++++++...+..+
T Consensus        38 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~  117 (350)
T 1rdq_E           38 AQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLY  117 (350)
T ss_dssp             CCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEE
T ss_pred             CCHHHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEE
Confidence            3457889999999999999999987  457788898865422 1223456888999999999999999999999999999


Q ss_pred             EEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        176 VISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       176 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +||||+++|+|.+++....  .+++..++.++.||+.||+|||+.|  |+||||||+|||++
T Consensus       118 lv~e~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~~--ivHrDlkp~NIll~  175 (350)
T 1rdq_E          118 MVMEYVAGGEMFSHLRRIG--RFSEPHARFYAAQIVLTFEYLHSLD--LIYRDLKPENLLID  175 (350)
T ss_dssp             EEEECCTTCBHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEEC
T ss_pred             EEEcCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCC--cccccCccceEEEC
Confidence            9999999999999998765  6999999999999999999999999  99999999999996

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=99.95  E-value=1.2e-27  Score=189.24  Aligned_cols=136  Identities=18%  Similarity=0.236  Sum_probs=113.0

Q ss_pred             CCCCCCCcccccccCCCCCCceeecc-----CCCceeeeeeeeccCC--chHHHHHHHHHhHhhhcCCCceeeeeeeeeC
Q psy12580         98 GISLNDLSLHTKISSGPNGDTWRGRW-----QKNDIVAKILAVRNCT--PRVSRDFNEEFPKLRIFSHPNVLPVIGCVNS  170 (239)
Q Consensus        98 ~~~~~~~~~~~~ig~g~~g~v~~~~~-----~~~~~~vk~~~~~~~~--~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~  170 (239)
                      .+..++|.+.+.||+|+||.||++..     .+..+++|++......  ......+.+|+.+++.++||||+++++++..
T Consensus        13 ~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~   92 (327)
T 3a62_A           13 KIRPECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQT   92 (327)
T ss_dssp             CCCGGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEEC
T ss_pred             CCCHHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEc
Confidence            45567899999999999999999875     4567788888654321  2233567789999999999999999999999


Q ss_pred             CCceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        171 PPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       171 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .+..++||||+++|+|.+++....  .+++..+..++.||+.||.|||+.|  |+||||||+|||++
T Consensus        93 ~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~al~~lH~~~--ivH~Dlkp~Nill~  155 (327)
T 3a62_A           93 GGKLYLILEYLSGGELFMQLEREG--IFMEDTACFYLAEISMALGHLHQKG--IIYRDLKPENIMLN  155 (327)
T ss_dssp             SSCEEEEEECCTTEEHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCTTTEEEC
T ss_pred             CCEEEEEEeCCCCCcHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHHHhCC--EEcccCCHHHeEEC
Confidence            999999999999999999998765  6899999999999999999999999  99999999999996

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=99.95  E-value=1.8e-27  Score=184.57  Aligned_cols=134  Identities=15%  Similarity=0.199  Sum_probs=118.9

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhc-CCCceeeeeeeeeCCCceEEEE
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIF-SHPNVLPVIGCVNSPPDLVVIS  178 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~l~~~~~~~~~~~lv~  178 (239)
                      .+|.+.+.||+|+||.||+|..  .+..+++|.+............+.+|+..+..+ +||||+++++++...+..++||
T Consensus        11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~lv~   90 (289)
T 1x8b_A           11 TEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLIQN   90 (289)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEEEEE
T ss_pred             chhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEEE
Confidence            5678889999999999999987  467788898876655555667888999999998 8999999999999999999999


Q ss_pred             eeCCCCCHHHHhhcCC--CcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        179 QYMAWGSLYALLHEGA--GIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       179 e~~~~gsL~~~l~~~~--~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||+++|+|.+++....  ...+++..++.++.|++.||.|||+.+  |+||||||+|||++
T Consensus        91 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~--ivH~Dikp~NIl~~  149 (289)
T 1x8b_A           91 EYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHSMS--LVHMDIKPSNIFIS  149 (289)
T ss_dssp             ECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEEC
T ss_pred             EecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHhCC--EeecCCCHHHEEEc
Confidence            9999999999998642  125899999999999999999999999  99999999999996

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.95  E-value=3.1e-27  Score=194.46  Aligned_cols=137  Identities=22%  Similarity=0.440  Sum_probs=119.1

Q ss_pred             cccCCCCCCCcccccccCCCCCCceeeccCC-CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCc
Q psy12580         95 RHKGISLNDLSLHTKISSGPNGDTWRGRWQK-NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPD  173 (239)
Q Consensus        95 ~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~-~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~  173 (239)
                      ..+.+..++|.+.+.||+|+||.||+|.+++ ..+++|.+......   .+.+.+|+.+|+.++||||+++++++.. +.
T Consensus       177 ~~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~---~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~  252 (452)
T 1fmk_A          177 DAWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMS---PEAFLQEAQVMKKLRHEKLVQLYAVVSE-EP  252 (452)
T ss_dssp             TCSBCCGGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSSC---HHHHHHHHHHHHHCCCTTBCCEEEEECS-SS
T ss_pred             cccccChhHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCCCC---HHHHHHHHHHHHhCCCCCEeeEEEEEcC-Cc
Confidence            3456777889999999999999999999865 46778888654322   3678999999999999999999999876 67


Q ss_pred             eEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        174 LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .++||||+++|+|.++++...+..+++..+..++.|++.||+|||+.+  |+||||||+|||++
T Consensus       253 ~~iv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~--ivHrDlkp~Nill~  314 (452)
T 1fmk_A          253 IYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMN--YVHRDLRAANILVG  314 (452)
T ss_dssp             CEEEECCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSGGGEEEC
T ss_pred             eEEEehhhcCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC--eeCCCCChhhEEEC
Confidence            899999999999999998643335899999999999999999999999  99999999999986

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=99.95  E-value=1e-27  Score=189.18  Aligned_cols=132  Identities=16%  Similarity=0.301  Sum_probs=114.7

Q ss_pred             CCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEE
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVIS  178 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~  178 (239)
                      .++|.+.+.||+|+||.||+|..  .+..+++|++..... ....+.+.+|+.+++.++||||+++++++..++..++||
T Consensus         6 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~   84 (323)
T 3tki_A            6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRA-VDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFL   84 (323)
T ss_dssp             TTCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC--------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hhhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccc-cchHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEE
Confidence            46789999999999999999976  456788888865432 223356889999999999999999999999999999999


Q ss_pred             eeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        179 QYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       179 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||+++|+|.+++....  .+++..+..++.|++.||+|||+.|  |+||||||+|||++
T Consensus        85 e~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~aL~~LH~~g--ivH~Dlkp~NIll~  139 (323)
T 3tki_A           85 EYCSGGELFDRIEPDI--GMPEPDAQRFFHQLMAGVVYLHGIG--ITHRDIKPENLLLD  139 (323)
T ss_dssp             ECCTTEEGGGGSBTTT--BCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEEC
T ss_pred             EcCCCCcHHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHHHCC--ccccccchHHEEEe
Confidence            9999999999998765  6999999999999999999999999  99999999999986

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=99.95  E-value=5.4e-29  Score=197.62  Aligned_cols=134  Identities=16%  Similarity=0.198  Sum_probs=109.8

Q ss_pred             CCCCCCcccccccCCCCCCceeeccCCCceeeeeeeeccC------CchHHHHHHHHHhHhhhcC---------CCceee
Q psy12580         99 ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNC------TPRVSRDFNEEFPKLRIFS---------HPNVLP  163 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~vk~~~~~~~------~~~~~~~~~~e~~~l~~l~---------h~~iv~  163 (239)
                      +...+|.+.+.||+|+||.||+|.+.+..+|+|++.....      .....+.+.+|+.+++.++         ||||++
T Consensus        17 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~   96 (336)
T 2vuw_A           17 LPTEKLQRCEKIGEGVFGEVFQTIADHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIG   96 (336)
T ss_dssp             SCHHHHHTCEEEEEETTEEEEEEEETTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCC
T ss_pred             cccccchheeeecccCceEEEEEEeCCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhh
Confidence            3456788999999999999999999888899999976532      2233467888999988875         666665


Q ss_pred             eeee-----------------eeC-------------CCceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHH
Q psy12580        164 VIGC-----------------VNS-------------PPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARG  213 (239)
Q Consensus       164 l~~~-----------------~~~-------------~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~  213 (239)
                      +.+.                 +..             .+..++||||+++|++.+.+.+.   .+++..++.++.||+.|
T Consensus        97 l~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~~---~~~~~~~~~i~~qi~~a  173 (336)
T 2vuw_A           97 LNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRTK---LSSLATAKSILHQLTAS  173 (336)
T ss_dssp             EEEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTTT---CCCHHHHHHHHHHHHHH
T ss_pred             hcceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHhc---CCCHHHHHHHHHHHHHH
Confidence            5554                 332             67899999999999777777542   58999999999999999


Q ss_pred             hhhhh-cCCCCcccCCCCCccceee
Q psy12580        214 MAFLH-SLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       214 l~~lH-~~~~~ivHrdikp~Nill~  237 (239)
                      |+||| +.+  ||||||||+|||++
T Consensus       174 L~~lH~~~~--ivHrDlKp~NILl~  196 (336)
T 2vuw_A          174 LAVAEASLR--FEHRDLHWGNVLLK  196 (336)
T ss_dssp             HHHHHHHHC--CBCSCCCGGGEEEE
T ss_pred             HHHHHHhCC--EeECCCCHHHEEEe
Confidence            99999 899  99999999999997

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=99.95  E-value=3.6e-27  Score=183.30  Aligned_cols=139  Identities=28%  Similarity=0.509  Sum_probs=119.7

Q ss_pred             ccccCCCCCCCcccccccCCCCCCceeeccCCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCc
Q psy12580         94 SRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPD  173 (239)
Q Consensus        94 ~~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~  173 (239)
                      ....++....|.+.+.||+|+||.||+|.+.+ .+++|++..........+.+.+|+.+++.++||||++++++.. .+.
T Consensus        16 ~~~~ei~~~~y~~~~~lG~G~~g~Vy~~~~~~-~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-~~~   93 (289)
T 3og7_A           16 ADDWEIPDGQITVGQRIGSGSFGTVYKGKWHG-DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYST-APQ   93 (289)
T ss_dssp             --CCBCCTTSCEEEEEEEECSSEEEEEEESSS-EEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSS
T ss_pred             CCCCccCccceeeeeEecCCCCeEEEEEEEcC-ceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeecc-CCc
Confidence            33456778889999999999999999998865 4888888776666666678999999999999999999999664 456


Q ss_pred             eEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        174 LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .++||||+++++|.+++.... ..+++..+..++.|++.||.|||+.+  |+||||||+|||++
T Consensus        94 ~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~L~~lH~~~--i~H~Dlkp~Nil~~  154 (289)
T 3og7_A           94 LAIVTQWCEGSSLYHHLHASE-TKFEMKKLIDIARQTARGMDYLHAKS--IIHRDLKSNNIFLH  154 (289)
T ss_dssp             CEEEEECCCEEEHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEEE
T ss_pred             cEEEEEecCCCcHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHHHHhCC--cccccCccceEEEC
Confidence            899999999999999997654 36899999999999999999999999  99999999999986

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=99.94  E-value=5e-27  Score=185.69  Aligned_cols=133  Identities=15%  Similarity=0.208  Sum_probs=112.3

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCC-------
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP-------  172 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~-------  172 (239)
                      .+|++.+.||+|+||.||+|..  .+..+++|++.... .....+.+.+|+.+++.++||||+++++++...+       
T Consensus         6 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~   84 (332)
T 3qd2_B            6 TDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPN-RELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQEE   84 (332)
T ss_dssp             HHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCS-TTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHHH
T ss_pred             hcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCC-chhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhhh
Confidence            4578889999999999999987  46778889886543 3345577899999999999999999999885443       


Q ss_pred             --------------------------------------------------ceEEEEeeCCCCCHHHHhhcCCC-cccCHH
Q psy12580        173 --------------------------------------------------DLVVISQYMAWGSLYALLHEGAG-IVVDFA  201 (239)
Q Consensus       173 --------------------------------------------------~~~lv~e~~~~gsL~~~l~~~~~-~~~~~~  201 (239)
                                                                        ..++||||+++|+|.+++..... ...++.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~  164 (332)
T 3qd2_B           85 MDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREHG  164 (332)
T ss_dssp             HHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSGGGSCHH
T ss_pred             hhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCccchhhH
Confidence                                                              28999999999999999987542 245667


Q ss_pred             HHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        202 QALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       202 ~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .++.++.|++.||.|||+.+  |+||||||+|||++
T Consensus       165 ~~~~i~~qi~~aL~~LH~~~--ivH~Dlkp~NIll~  198 (332)
T 3qd2_B          165 VCLHIFIQIAEAVEFLHSKG--LMHRDLKPSNIFFT  198 (332)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEEC
T ss_pred             HHHHHHHHHHHHHHHHHhCC--eeecCCCcccEEEe
Confidence            79999999999999999999  99999999999996

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=99.94  E-value=3.4e-27  Score=183.24  Aligned_cols=137  Identities=21%  Similarity=0.435  Sum_probs=121.4

Q ss_pred             ccCCCCCCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCc
Q psy12580         96 HKGISLNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPD  173 (239)
Q Consensus        96 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~  173 (239)
                      .+.+...+|.+.+.||+|+||.||+|.+.  +..+++|.+...   ....+.+.+|+.+++.++||||+++++++...+.
T Consensus         7 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~   83 (288)
T 3kfa_A            7 KWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED---TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPP   83 (288)
T ss_dssp             TTBCCGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSC---STHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred             cccccccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcC---HHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCC
Confidence            45566788999999999999999999885  456777877532   3345678899999999999999999999999999


Q ss_pred             eEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        174 LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .++||||+++++|.+++.......+++..++.++.|++.||.|||+.+  |+||||||+||+++
T Consensus        84 ~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~--i~H~dikp~Nil~~  145 (288)
T 3kfa_A           84 FYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKN--FIHRDLAARNCLVG  145 (288)
T ss_dssp             EEEEEECCTTEEHHHHHHHCCTTTSCHHHHHHHHHHHHHHHHHHHHHT--CCCSCCSGGGEEEC
T ss_pred             EEEEEEcCCCCcHHHHHHhcccCCccHhHHHHHHHHHHHHHHHHHHCC--ccCCCCCcceEEEc
Confidence            999999999999999998866557999999999999999999999999  99999999999985

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=99.94  E-value=3.7e-27  Score=190.12  Aligned_cols=139  Identities=22%  Similarity=0.320  Sum_probs=119.7

Q ss_pred             ccCCCCCCCcccccccCCCCCCceeeccCC---------CceeeeeeeeccCCchHHHHHHHHHhHhhhc-CCCceeeee
Q psy12580         96 HKGISLNDLSLHTKISSGPNGDTWRGRWQK---------NDIVAKILAVRNCTPRVSRDFNEEFPKLRIF-SHPNVLPVI  165 (239)
Q Consensus        96 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~---------~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~l~  165 (239)
                      .+.+..+.|.+.+.||+|+||.||+|.+.+         ..+++|++... ........+.+|+.+++.+ +||||++++
T Consensus        63 ~~~i~~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~E~~~l~~l~~hpnIv~~~  141 (382)
T 3tt0_A           63 RWELPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSD-ATEKDLSDLISEMEMMKMIGKHKNIINLL  141 (382)
T ss_dssp             TTBCCGGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTT-CCHHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             ccccchhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccc-cCHHHHHHHHHHHHHHHHhcCCchhhhhe
Confidence            345666889999999999999999998522         34777877543 3344557789999999999 899999999


Q ss_pred             eeeeCCCceEEEEeeCCCCCHHHHhhcCC--------------CcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCC
Q psy12580        166 GCVNSPPDLVVISQYMAWGSLYALLHEGA--------------GIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNS  231 (239)
Q Consensus       166 ~~~~~~~~~~lv~e~~~~gsL~~~l~~~~--------------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp  231 (239)
                      +++...+..++||||+++|+|.+++....              ...+++..++.++.|++.||.|||+.+  |+||||||
T Consensus       142 ~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~--ivH~Dlkp  219 (382)
T 3tt0_A          142 GACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKK--CIHRDLAA  219 (382)
T ss_dssp             EEECSSSSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCG
T ss_pred             eeeccCCceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhCC--EecCCCCc
Confidence            99999999999999999999999998653              135899999999999999999999999  99999999


Q ss_pred             ccceee
Q psy12580        232 RHVMVY  237 (239)
Q Consensus       232 ~Nill~  237 (239)
                      +|||++
T Consensus       220 ~NIll~  225 (382)
T 3tt0_A          220 RNVLVT  225 (382)
T ss_dssp             GGEEEC
T ss_pred             ceEEEc
Confidence            999996

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=99.94  E-value=3e-27  Score=181.98  Aligned_cols=137  Identities=22%  Similarity=0.407  Sum_probs=115.5

Q ss_pred             CCCCCCCcccccccCCCCCCceeeccCCCceeeeeeeeccCC--chHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceE
Q psy12580         98 GISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCT--PRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLV  175 (239)
Q Consensus        98 ~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~vk~~~~~~~~--~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~  175 (239)
                      ++...+|.+.+.||+|+||.||+|.+.+..+++|++......  ....+.+.+|+.+++.++||||+++++++...+..+
T Consensus         3 ~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   82 (271)
T 3dtc_A            3 EIDFAELTLEEIIGIGGFGKVYRAFWIGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLC   82 (271)
T ss_dssp             BCCTTSEEEEEEEEEETTEEEEEEEETTEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--CE
T ss_pred             ccchhheeeeeeeccCCCeEEEEEEEcCCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceE
Confidence            456688999999999999999999998888999988654322  223467889999999999999999999999999999


Q ss_pred             EEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCC-CcccCCCCCccceee
Q psy12580        176 VISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLER-IIPQYQLNSRHVMVY  237 (239)
Q Consensus       176 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~-~ivHrdikp~Nill~  237 (239)
                      +||||+++++|.+++...   .+++..++.++.|++.||.|||+.+. +|+||||||+|||++
T Consensus        83 lv~e~~~~~~L~~~~~~~---~~~~~~~~~i~~~l~~~l~~lH~~~~~~i~H~dikp~Nil~~  142 (271)
T 3dtc_A           83 LVMEFARGGPLNRVLSGK---RIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILIL  142 (271)
T ss_dssp             EEEECCTTEEHHHHHTSS---CCCHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCCSGGGEEES
T ss_pred             EEEEcCCCCCHHHHhhcC---CCCHHHHHHHHHHHHHHHHHHHhCCCCceeecCCchHHEEEe
Confidence            999999999999999654   58999999999999999999999873 388999999999986

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=99.94  E-value=1.1e-27  Score=194.33  Aligned_cols=138  Identities=13%  Similarity=0.109  Sum_probs=119.0

Q ss_pred             cCCCCCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccC-CchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCc
Q psy12580         97 KGISLNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNC-TPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPD  173 (239)
Q Consensus        97 ~~~~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~  173 (239)
                      ..+..++|.+.+.||+|+||.||++..  .+..+++|++..... .......+..|..++..++||||+++++++...+.
T Consensus        56 ~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~~~  135 (412)
T 2vd5_A           56 VRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQDENY  135 (412)
T ss_dssp             HSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEECSSE
T ss_pred             ccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCE
Confidence            345668899999999999999999987  457788898864321 11223457889999999999999999999999999


Q ss_pred             eEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        174 LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +++||||+++|+|.+++...+ ..+++..++.++.||+.||+|||+.+  ||||||||+|||+|
T Consensus       136 ~~lVmE~~~gg~L~~~l~~~~-~~l~~~~~~~~~~qi~~aL~~LH~~g--iiHrDLKp~NILld  196 (412)
T 2vd5_A          136 LYLVMEYYVGGDLLTLLSKFG-ERIPAEMARFYLAEIVMAIDSVHRLG--YVHRDIKPDNILLD  196 (412)
T ss_dssp             EEEEECCCCSCBHHHHHHHHS-SCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEEC
T ss_pred             EEEEEcCCCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCC--eeecccCHHHeeec
Confidence            999999999999999998643 25899999999999999999999999  99999999999997

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=99.94  E-value=4e-27  Score=182.50  Aligned_cols=133  Identities=15%  Similarity=0.222  Sum_probs=120.7

Q ss_pred             CCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEE
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVIS  178 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~  178 (239)
                      .++|.+.+.||+|+||.||+|..  .+..+++|++..........+.+.+|+.+++.++||||+++++++...+..++||
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   84 (284)
T 3kk8_A            5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF   84 (284)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEEE
Confidence            36788999999999999999976  4567888998776666666678889999999999999999999999999999999


Q ss_pred             eeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        179 QYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       179 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||+++|+|.+++....  .+++..+..++.|++.||.|||+.+  |+||||||+||+++
T Consensus        85 e~~~~~~l~~~~~~~~--~~~~~~~~~~~~~i~~~l~~lH~~~--i~H~dikp~Nil~~  139 (284)
T 3kk8_A           85 DLVTGGELFEDIVARE--FYSEADASHCIQQILESIAYCHSNG--IVHRNLKPENLLLA  139 (284)
T ss_dssp             CCCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCCGGGEEES
T ss_pred             ecCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCC--cCcCCCCHHHEEEe
Confidence            9999999999998765  6899999999999999999999999  99999999999985

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=99.94  E-value=3.1e-27  Score=189.62  Aligned_cols=137  Identities=18%  Similarity=0.261  Sum_probs=111.0

Q ss_pred             cCCCCCCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCC-chHHHHHHHHHhH-hhhcCCCceeeeeeeeeCCC
Q psy12580         97 KGISLNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCT-PRVSRDFNEEFPK-LRIFSHPNVLPVIGCVNSPP  172 (239)
Q Consensus        97 ~~~~~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~-~~~~~~~~~e~~~-l~~l~h~~iv~l~~~~~~~~  172 (239)
                      .....++|.+.+.||+|+||.||+++..  +..+++|++...... ......+..|..+ ++.++||||+++++++...+
T Consensus        33 ~~~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~  112 (373)
T 2r5t_A           33 PHAKPSDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTAD  112 (373)
T ss_dssp             TTCCGGGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSS
T ss_pred             CCCChhheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCC
Confidence            3456688999999999999999999874  456788988765432 2233456667766 56789999999999999999


Q ss_pred             ceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        173 DLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       173 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .+++||||+++|+|.+++....  .+++..++.++.||+.||+|||+.|  |+||||||+|||++
T Consensus       113 ~~~lv~E~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~g--ivHrDlkp~NIll~  173 (373)
T 2r5t_A          113 KLYFVLDYINGGELFYHLQRER--CFLEPRARFYAAEIASALGYLHSLN--IVYRDLKPENILLD  173 (373)
T ss_dssp             EEEEEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCGGGEEEC
T ss_pred             EEEEEEeCCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCC--ceecCCCHHHEEEC
Confidence            9999999999999999998765  6899999999999999999999999  99999999999996

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=99.94  E-value=1.6e-26  Score=179.43  Aligned_cols=139  Identities=22%  Similarity=0.438  Sum_probs=118.3

Q ss_pred             ccCCCCCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHH-----HHHHHHHhHhhhcCCCceeeeeeee
Q psy12580         96 HKGISLNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVS-----RDFNEEFPKLRIFSHPNVLPVIGCV  168 (239)
Q Consensus        96 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~-----~~~~~e~~~l~~l~h~~iv~l~~~~  168 (239)
                      ...+...+|.+.+.||+|+||.||+|..  .+..+++|++..........     +.+.+|+.+++.++||||+++++++
T Consensus        13 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~   92 (287)
T 4f0f_A           13 LPTLADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLM   92 (287)
T ss_dssp             CCBCCSTTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEE
T ss_pred             hhhhhhccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheee
Confidence            4446668899999999999999999987  45678888886544332221     5788999999999999999999998


Q ss_pred             eCCCceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        169 NSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       169 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ....  ++||||+++|+|.+++.... ..+++..++.++.|++.||.|||+.+++|+||||||+|||++
T Consensus        93 ~~~~--~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~l~~~l~~lH~~~~~ivH~dikp~Nil~~  158 (287)
T 4f0f_A           93 HNPP--RMVMEFVPCGDLYHRLLDKA-HPIKWSVKLRLMLDIALGIEYMQNQNPPIVHRDLRSPNIFLQ  158 (287)
T ss_dssp             TTTT--EEEEECCTTCBHHHHHHCTT-SCCCHHHHHHHHHHHHHHHHHHHTSSSCCBCSCCSGGGEEES
T ss_pred             cCCC--eEEEEecCCCCHHHHHhccc-CCccHHHHHHHHHHHHHHHHHHHhCCCCeecCCCCcceEEEe
Confidence            7665  79999999999999987654 369999999999999999999999887799999999999985

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=99.94  E-value=3.3e-27  Score=183.98  Aligned_cols=135  Identities=23%  Similarity=0.392  Sum_probs=116.3

Q ss_pred             CCCCCCCcccccccCCCCCCceeecc------CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCC
Q psy12580         98 GISLNDLSLHTKISSGPNGDTWRGRW------QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSP  171 (239)
Q Consensus        98 ~~~~~~~~~~~~ig~g~~g~v~~~~~------~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~  171 (239)
                      .+...+|++.+.||+|+||.||+|.+      .+..+++|.+...  .....+.+.+|+.+++.++||||+++++++...
T Consensus         6 ~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~   83 (295)
T 3ugc_A            6 QFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHS--TEEHLRDFEREIEILKSLQHDNIVKYKGVCYSA   83 (295)
T ss_dssp             CCCGGGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCC--CHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHH
T ss_pred             cCCHHHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccC--CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecC
Confidence            35567889999999999999999984      3456777877532  344457789999999999999999999998543


Q ss_pred             --CceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        172 --PDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       172 --~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                        ..+++||||+++|+|.+++..... .+++..+..++.|++.||.|||+.+  |+||||||+|||++
T Consensus        84 ~~~~~~lv~e~~~~~~L~~~l~~~~~-~~~~~~~~~~~~qi~~~l~~lH~~~--ivH~Dikp~Nil~~  148 (295)
T 3ugc_A           84 GRRNLKLIMEYLPYGSLRDYLQKHKE-RIDHIKLLQYTSQICKGMEYLGTKR--YIHRDLATRNILVE  148 (295)
T ss_dssp             HHTSCEEEEECCTTCBHHHHHHHCGG-GCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSGGGEEEE
T ss_pred             CCCceEEEEEeCCCCCHHHHHHhccc-ccCHHHHHHHHHHHHHHHHHHhcCC--cccCCCCHhhEEEc
Confidence              468999999999999999987652 5899999999999999999999999  99999999999986

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=99.94  E-value=1.1e-26  Score=183.69  Aligned_cols=143  Identities=21%  Similarity=0.337  Sum_probs=120.9

Q ss_pred             ccccccCCCCCCCcccccccCCCCCCceeeccC-------CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeee
Q psy12580         92 TLSRHKGISLNDLSLHTKISSGPNGDTWRGRWQ-------KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPV  164 (239)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~-------~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l  164 (239)
                      .+.....+...+|.+.+.||+|+||.||+|.+.       +..+++|.+... ........+.+|+.+++.++||||+++
T Consensus        20 s~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~E~~~l~~l~h~~iv~~   98 (327)
T 2yfx_A           20 SISDLKEVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEV-CSEQDELDFLMEALIISKFNHQNIVRC   98 (327)
T ss_dssp             CGGGSCBCCGGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSS-CCHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred             chhhcccCChhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccc-cchhhHHHHHHHHHHHhhCCCCCCCeE
Confidence            445566678889999999999999999999853       345788887533 234455678899999999999999999


Q ss_pred             eeeeeCCCceEEEEeeCCCCCHHHHhhcCCC-----cccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        165 IGCVNSPPDLVVISQYMAWGSLYALLHEGAG-----IVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       165 ~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~-----~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ++++......++||||+++|+|.+++.....     ..+++..++.++.|++.||.|||+.+  |+||||||+|||++
T Consensus        99 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~--i~H~dlkp~NIli~  174 (327)
T 2yfx_A           99 IGVSLQSLPRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENH--FIHRDIAARNCLLT  174 (327)
T ss_dssp             EEEECSSSSCEEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEES
T ss_pred             EEEEcCCCCcEEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHhhCC--eecCcCCHhHEEEe
Confidence            9999999999999999999999999987531     24889999999999999999999999  99999999999997

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=99.94  E-value=1.9e-27  Score=189.76  Aligned_cols=135  Identities=18%  Similarity=0.240  Sum_probs=115.6

Q ss_pred             CCCCcccccccCCCCCCceeecc--CCCceeeeeeeecc---CCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceE
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRN---CTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLV  175 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~---~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~  175 (239)
                      .+.|.+.+.||+|+||.||+|..  .+..+++|++....   ......+.+.+|+.+++.++||||+++++++...+..+
T Consensus        23 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~  102 (351)
T 3c0i_A           23 EDVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLY  102 (351)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEE
T ss_pred             ccceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEE
Confidence            35688899999999999999976  45778889886432   11123467889999999999999999999999999999


Q ss_pred             EEEeeCCCCCHHHHhhcC--CCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        176 VISQYMAWGSLYALLHEG--AGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       176 lv~e~~~~gsL~~~l~~~--~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +||||+++|+|.+++...  .+..+++..+..++.||+.||.|||+.+  |+||||||+|||++
T Consensus       103 lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~--ivHrDlkp~NIl~~  164 (351)
T 3c0i_A          103 MVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCHDNN--IIHRDVKPHCVLLA  164 (351)
T ss_dssp             EEEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEEC
T ss_pred             EEEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHCC--ceeccCChHHeEEe
Confidence            999999999999888642  2235899999999999999999999999  99999999999995

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=99.94  E-value=2.7e-27  Score=195.32  Aligned_cols=135  Identities=18%  Similarity=0.409  Sum_probs=119.0

Q ss_pred             CCCCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCC-chHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceE
Q psy12580         99 ISLNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCT-PRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLV  175 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~  175 (239)
                      +...+|.+.+.||+|+||.||+|..  .+..+++|++...... ......+.+|+.+++.++||||+++++++...+..+
T Consensus        13 ~~~~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~   92 (476)
T 2y94_A           13 VKIGHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIF   92 (476)
T ss_dssp             CEETTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEE
T ss_pred             ceecCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEE
Confidence            3457789999999999999999986  4678888988654221 123457889999999999999999999999999999


Q ss_pred             EEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        176 VISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       176 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +||||+++|+|.+++....  .+++..+..++.||+.||+|||+.+  |+||||||+|||++
T Consensus        93 lv~E~~~gg~L~~~l~~~~--~l~~~~~~~i~~qi~~aL~~LH~~g--ivHrDLkp~NIll~  150 (476)
T 2y94_A           93 MVMEYVSGGELFDYICKNG--RLDEKESRRLFQQILSGVDYCHRHM--VVHRDLKPENVLLD  150 (476)
T ss_dssp             EEEECCSSEEHHHHTTSSS--SCCHHHHHHHHHHHHHHHHHHHTTT--EECSCCSGGGEEEC
T ss_pred             EEEeCCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCC--CCcccccHHHEEEe
Confidence            9999999999999998765  6999999999999999999999999  99999999999996

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=99.94  E-value=2.9e-27  Score=196.78  Aligned_cols=132  Identities=17%  Similarity=0.273  Sum_probs=112.5

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEe
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQ  179 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e  179 (239)
                      ..|.+.+.||+|+||.||+|..  .+..+++|++............+.+|+.+++.++||||+++++++......++|||
T Consensus        37 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e  116 (494)
T 3lij_A           37 EMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVME  116 (494)
T ss_dssp             HHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             cCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEe
Confidence            4688899999999999999987  35677889887654444445678899999999999999999999999999999999


Q ss_pred             eCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       180 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |+++|+|.+++....  .+++..+..++.|++.||.|||+.|  |+||||||+|||++
T Consensus       117 ~~~~g~L~~~~~~~~--~~~~~~~~~i~~qi~~~l~~lH~~~--ivH~Dlkp~Nil~~  170 (494)
T 3lij_A          117 CYKGGELFDEIIHRM--KFNEVDAAVIIKQVLSGVTYLHKHN--IVHRDLKPENLLLE  170 (494)
T ss_dssp             CCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEES
T ss_pred             cCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCC--ceeccCChhhEEEe
Confidence            999999999998765  6899999999999999999999999  99999999999995

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=99.94  E-value=5.2e-27  Score=193.55  Aligned_cols=131  Identities=15%  Similarity=0.185  Sum_probs=107.0

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCC-----Cce
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSP-----PDL  174 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~-----~~~  174 (239)
                      ++|.+.+.||+|+||.||+|..  .+..+++|++..........+.+.+|+.+|+.++||||+++++++...     ..+
T Consensus        53 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~  132 (458)
T 3rp9_A           53 DRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDEL  132 (458)
T ss_dssp             TTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCCE
T ss_pred             CCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCceE
Confidence            6789999999999999999976  457788888865544455567889999999999999999999998433     479


Q ss_pred             EEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        175 VVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       175 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ++||||++ |+|.++++...  .+++..++.++.||+.||+|||+.+  ||||||||+||||+
T Consensus       133 ~lv~e~~~-~~L~~~~~~~~--~l~~~~~~~~~~qi~~aL~~LH~~~--iiHrDlKp~NILl~  190 (458)
T 3rp9_A          133 YVVLEIAD-SDFKKLFRTPV--YLTELHIKTLLYNLLVGVKYVHSAG--ILHRDLKPANCLVN  190 (458)
T ss_dssp             EEEECCCS-EEHHHHHHSSC--CCCHHHHHHHHHHHHHHHHHHHHTT--CBCCCCCGGGEEEC
T ss_pred             EEEEeccc-cchhhhcccCC--CCCHHHHHHHHHHHHHHHHHHHhCC--cCCCCCChhhEEEC
Confidence            99999985 59999998765  6999999999999999999999999  99999999999996

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=99.94  E-value=2.9e-27  Score=187.15  Aligned_cols=134  Identities=16%  Similarity=0.261  Sum_probs=114.0

Q ss_pred             CCCCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEE
Q psy12580         99 ISLNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVV  176 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~l  176 (239)
                      ...++|.+.+.||+|+||.||+|..  .+..+++|++............+.+|+.+++.++||||+++++++...+..++
T Consensus        31 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l  110 (329)
T 3gbz_A           31 TSIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLHL  110 (329)
T ss_dssp             -CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEETTEEEE
T ss_pred             cchhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecCCEEEE
Confidence            3446789999999999999999975  56778889886654444445667899999999999999999999999999999


Q ss_pred             EEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        177 ISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       177 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||||+++ +|.+++....  .+++..++.++.|++.||.|||+.+  |+||||||+|||++
T Consensus       111 v~e~~~~-~L~~~~~~~~--~~~~~~~~~i~~ql~~~l~~LH~~~--ivH~Dlkp~NIll~  166 (329)
T 3gbz_A          111 IFEYAEN-DLKKYMDKNP--DVSMRVIKSFLYQLINGVNFCHSRR--CLHRDLKPQNLLLS  166 (329)
T ss_dssp             EEECCSE-EHHHHHHHCT--TCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEEE
T ss_pred             EEecCCC-CHHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHHhCC--EECCCCCHHHEEEe
Confidence            9999975 9999998876  6999999999999999999999999  99999999999994

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=99.94  E-value=3.7e-27  Score=183.14  Aligned_cols=132  Identities=16%  Similarity=0.284  Sum_probs=115.3

Q ss_pred             CCCcccccccCCCCCCceeeccC-CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEee
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRWQ-KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQY  180 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~  180 (239)
                      ++|.+.+.||+|+||.||+|... +..+++|.+............+.+|+.+++.++||||+++++++...+..++||||
T Consensus         2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   81 (288)
T 1ob3_A            2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH   81 (288)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred             ccchhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEEEe
Confidence            46788999999999999999874 56788888865543333346688999999999999999999999999999999999


Q ss_pred             CCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        181 MAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       181 ~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +++ +|.+++....+ .+++..+..++.|++.||.|||+.|  |+||||||+|||++
T Consensus        82 ~~~-~l~~~~~~~~~-~~~~~~~~~~~~qi~~~l~~lH~~~--i~H~dlkp~Nil~~  134 (288)
T 1ob3_A           82 LDQ-DLKKLLDVCEG-GLESVTAKSFLLQLLNGIAYCHDRR--VLHRDLKPQNLLIN  134 (288)
T ss_dssp             CSE-EHHHHHHTSTT-CCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEEC
T ss_pred             cCC-CHHHHHHhccc-CCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCCHHHEEEc
Confidence            976 99999987542 5899999999999999999999999  99999999999986

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=99.94  E-value=7.7e-27  Score=185.71  Aligned_cols=134  Identities=10%  Similarity=0.140  Sum_probs=118.9

Q ss_pred             CCCCCCcccccccCCCCCCceeeccC-CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCC--CceeeeeeeeeCCCceE
Q psy12580         99 ISLNDLSLHTKISSGPNGDTWRGRWQ-KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSH--PNVLPVIGCVNSPPDLV  175 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h--~~iv~l~~~~~~~~~~~  175 (239)
                      +....|.+.+.||+|+||.||++... +..+++|++..........+.+.+|+.++..++|  |||+++++++...+..+
T Consensus         6 ~~~~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~   85 (343)
T 3dbq_A            6 VKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIY   85 (343)
T ss_dssp             SSSCEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEE
T ss_pred             eecCEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEE
Confidence            45677899999999999999999874 4567789887666566666789999999999976  99999999999999999


Q ss_pred             EEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        176 VISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       176 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +|||+ .+|+|.+++....  .+++..+..++.|++.||.|||+.+  |+||||||+|||++
T Consensus        86 lv~e~-~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~al~~lH~~~--iiHrDikp~NIll~  142 (343)
T 3dbq_A           86 MVMEC-GNIDLNSWLKKKK--SIDPWERKSYWKNMLEAVHTIHQHG--IVHSDLKPANFLIV  142 (343)
T ss_dssp             EEECC-CSEEHHHHHHHSC--CCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCGGGEEEE
T ss_pred             EEEeC-CCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCCcceEEEE
Confidence            99995 5779999999866  6899999999999999999999999  99999999999985

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=99.94  E-value=4.3e-27  Score=188.18  Aligned_cols=139  Identities=22%  Similarity=0.339  Sum_probs=117.8

Q ss_pred             ccCCCCCCCcccccccCCCCCCceeeccC-------CCceeeeeeeeccCCchHHHHHHHHHhHhhhc-CCCceeeeeee
Q psy12580         96 HKGISLNDLSLHTKISSGPNGDTWRGRWQ-------KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIF-SHPNVLPVIGC  167 (239)
Q Consensus        96 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~~-------~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~l~~~  167 (239)
                      .+.+..++|.+.+.||+|+||.||+|.+.       +..+++|++... ......+.+.+|+.++..+ +||||++++++
T Consensus        16 ~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~E~~~l~~l~~hpniv~~~~~   94 (359)
T 3vhe_A           16 KWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEG-ATHSEHRALMSELKILIHIGHHLNVVNLLGA   94 (359)
T ss_dssp             HHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTT-CCHHHHHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             cccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCc-CCHHHHHHHHHHHHHHHhhcCCcceeeeeee
Confidence            44567788999999999999999999742       256777888543 2344456789999999999 78999999999


Q ss_pred             eeCCC-ceEEEEeeCCCCCHHHHhhcCCC---------------------------------------------------
Q psy12580        168 VNSPP-DLVVISQYMAWGSLYALLHEGAG---------------------------------------------------  195 (239)
Q Consensus       168 ~~~~~-~~~lv~e~~~~gsL~~~l~~~~~---------------------------------------------------  195 (239)
                      +...+ ..++||||+++|+|.+++.....                                                   
T Consensus        95 ~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (359)
T 3vhe_A           95 CTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEKSLS  174 (359)
T ss_dssp             ECSTTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC---------------------------------------------
T ss_pred             eecCCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCccccccccccccccccc
Confidence            87765 59999999999999999986542                                                   


Q ss_pred             -------------cccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        196 -------------IVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       196 -------------~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                                   ..+++..++.++.|++.||.|||+.+  |+||||||+|||++
T Consensus       175 ~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~~--ivH~Dikp~NIll~  227 (359)
T 3vhe_A          175 DVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRK--CIHRDLAARNILLS  227 (359)
T ss_dssp             ---------CTTTTCBCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSGGGEEEC
T ss_pred             hhhhcccccchhccccCHHHHHHHHHHHHHHHHHHHHCC--cccCCCChhhEEEc
Confidence                         12899999999999999999999999  99999999999996

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=99.94  E-value=4.9e-27  Score=184.33  Aligned_cols=132  Identities=14%  Similarity=0.178  Sum_probs=118.0

Q ss_pred             CCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEe
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQ  179 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e  179 (239)
                      ++|.+.+.||+|+||.||+|...  +..+++|++..........+.+.+|+.+++.++||||+++++++...+..++|||
T Consensus         3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   82 (311)
T 4agu_A            3 EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVFE   82 (311)
T ss_dssp             CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             ccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEEEE
Confidence            56788999999999999999874  5678888886655555556778899999999999999999999999999999999


Q ss_pred             eCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       180 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |+++++|.+++....  .+++..+..++.|++.||.|||+.|  |+||||||+|||++
T Consensus        83 ~~~~~~l~~~~~~~~--~~~~~~~~~i~~~l~~~l~~lH~~~--ivH~dlkp~Nil~~  136 (311)
T 4agu_A           83 YCDHTVLHELDRYQR--GVPEHLVKSITWQTLQAVNFCHKHN--CIHRDVKPENILIT  136 (311)
T ss_dssp             CCSEEHHHHHHHTSS--CCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEEC
T ss_pred             eCCCchHHHHHhhhc--CCCHHHHHHHHHHHHHHHHHHHHCC--CcCCCCChhhEEEc
Confidence            999999999887765  6899999999999999999999999  99999999999986

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=99.94  E-value=1.6e-27  Score=190.07  Aligned_cols=136  Identities=19%  Similarity=0.210  Sum_probs=116.6

Q ss_pred             CCCCCCCcccccccCCCCCCceeeccCC--CceeeeeeeeccC-CchHHHHHHHHHhHhhhc-CCCceeeeeeeeeCCCc
Q psy12580         98 GISLNDLSLHTKISSGPNGDTWRGRWQK--NDIVAKILAVRNC-TPRVSRDFNEEFPKLRIF-SHPNVLPVIGCVNSPPD  173 (239)
Q Consensus        98 ~~~~~~~~~~~~ig~g~~g~v~~~~~~~--~~~~vk~~~~~~~-~~~~~~~~~~e~~~l~~l-~h~~iv~l~~~~~~~~~  173 (239)
                      .+...+|.+.+.||+|+||.||++...+  ..+++|++..... .......+..|..++..+ .||+|+++++++...+.
T Consensus        16 ~~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~   95 (353)
T 2i0e_A           16 RMKLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDR   95 (353)
T ss_dssp             ---CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSE
T ss_pred             CCchHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCE
Confidence            3556889999999999999999998853  5678888865421 122345677899999887 79999999999999999


Q ss_pred             eEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        174 LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .++||||+++|+|.+++....  .+++..++.++.||+.||+|||+.|  |+||||||+|||++
T Consensus        96 ~~lv~E~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~g--ivHrDlkp~NIll~  155 (353)
T 2i0e_A           96 LYFVMEYVNGGDLMYHIQQVG--RFKEPHAVFYAAEIAIGLFFLQSKG--IIYRDLKLDNVMLD  155 (353)
T ss_dssp             EEEEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTT--CBCCCCCGGGEEEC
T ss_pred             EEEEEeCCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCC--EEeccCCHHHEEEc
Confidence            999999999999999998765  6999999999999999999999999  99999999999996

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=99.94  E-value=9.2e-27  Score=183.63  Aligned_cols=134  Identities=21%  Similarity=0.406  Sum_probs=117.3

Q ss_pred             CCCCCcccccccCCCCCCceeeccC-CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEE
Q psy12580        100 SLNDLSLHTKISSGPNGDTWRGRWQ-KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVIS  178 (239)
Q Consensus       100 ~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~  178 (239)
                      ...+|...+.||+|+||.||+|.+. +..+++|.+....  ....+.+.+|+.+++.++||||+++++++...+..++||
T Consensus        37 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  114 (321)
T 2qkw_B           37 ATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPES--SQGIEEFETEIETLSFCRHPHLVSLIGFCDERNEMILIY  114 (321)
T ss_dssp             CCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCC--SSHHHHHHHHHHGGGSCCCTTBCCEEEECCCTTCCEEEE
T ss_pred             HHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccC--hHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCeEEEEE
Confidence            3467889999999999999999985 5677778765432  334567899999999999999999999999999999999


Q ss_pred             eeCCCCCHHHHhhcCC--CcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        179 QYMAWGSLYALLHEGA--GIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       179 e~~~~gsL~~~l~~~~--~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||+++|+|.+++....  ...+++..+..++.|++.||.|||+.+  |+||||||+|||++
T Consensus       115 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~--ivH~dlkp~Nil~~  173 (321)
T 2qkw_B          115 KYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTRA--IIHRDVKSINILLD  173 (321)
T ss_dssp             ECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCCSTTEEEC
T ss_pred             EcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhcCCC--eecCCCCHHHEEEC
Confidence            9999999999997643  235899999999999999999999999  99999999999986

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=99.94  E-value=3.6e-27  Score=195.85  Aligned_cols=132  Identities=13%  Similarity=0.301  Sum_probs=118.0

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEe
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQ  179 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e  179 (239)
                      +.|.+.+.||+|+||.||+|..  .+..+++|++............+.+|+.+++.++||||+++++++......++|||
T Consensus        22 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e  101 (486)
T 3mwu_A           22 ERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVGE  101 (486)
T ss_dssp             HHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred             cceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEEEE
Confidence            6688899999999999999987  46778889886544333345678899999999999999999999999999999999


Q ss_pred             eCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       180 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |+.+|+|.+++....  .+++..+..++.|++.||.|||+.|  |+||||||+|||++
T Consensus       102 ~~~~~~L~~~~~~~~--~~~~~~~~~i~~qi~~al~~lH~~~--ivH~Dlkp~Nil~~  155 (486)
T 3mwu_A          102 LYTGGELFDEIIKRK--RFSEHDAARIIKQVFSGITYMHKHN--IVHRDLKPENILLE  155 (486)
T ss_dssp             CCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSGGGEEES
T ss_pred             cCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCC--eEeccCchHHEEEe
Confidence            999999999998765  6999999999999999999999999  99999999999994

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.94  E-value=1.9e-27  Score=199.41  Aligned_cols=136  Identities=22%  Similarity=0.444  Sum_probs=118.5

Q ss_pred             ccCCCCCCCcccccccCCCCCCceeeccCC-CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCce
Q psy12580         96 HKGISLNDLSLHTKISSGPNGDTWRGRWQK-NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDL  174 (239)
Q Consensus        96 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~-~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~  174 (239)
                      .+.+..++|.+.+.||+|+||.||+|.+.+ ..+++|++......   .+.+.+|+.+|+.++||||+++++++.. +..
T Consensus       261 ~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~---~~~~~~E~~~l~~l~hpniv~~~~~~~~-~~~  336 (535)
T 2h8h_A          261 AWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMS---PEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPI  336 (535)
T ss_dssp             CSBCCGGGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTSSC---HHHHHHHHHHHHHCCCTTBCCEEEEECS-SSC
T ss_pred             ceecchhhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCCCC---HHHHHHHHHHHHhCCCCCEeeEEEEEee-ccc
Confidence            456777888999999999999999999865 56778888654322   3678999999999999999999999876 678


Q ss_pred             EEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        175 VVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       175 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ++||||+++|+|.++++...+..+++..+..++.||+.||+|||+.+  ||||||||+|||++
T Consensus       337 ~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~--ivHrDlkp~NIll~  397 (535)
T 2h8h_A          337 YIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMN--YVHRDLRAANILVG  397 (535)
T ss_dssp             EEEECCCTTEEHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSGGGEEEC
T ss_pred             eEeeehhcCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC--eeCCCCCHhhEEEc
Confidence            99999999999999998643335899999999999999999999999  99999999999996

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=99.94  E-value=4.7e-27  Score=186.94  Aligned_cols=139  Identities=22%  Similarity=0.349  Sum_probs=117.0

Q ss_pred             ccCCCCCCCcccccccCCCCCCceeecc-------CCCceeeeeeeeccCCchHHHHHHHHHhHhhhc-CCCceeeeeee
Q psy12580         96 HKGISLNDLSLHTKISSGPNGDTWRGRW-------QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIF-SHPNVLPVIGC  167 (239)
Q Consensus        96 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~-------~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~l~~~  167 (239)
                      .+.+..++|.+.+.||+|+||.||+|.+       .+..+++|.+.... .....+.+.+|+.++..+ .||||++++++
T Consensus        39 ~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~  117 (344)
T 1rjb_A           39 KWEFPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKA-DSSEREALMSELKMMTQLGSHENIVNLLGA  117 (344)
T ss_dssp             GGBCCGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC-------CHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             CcccCHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEeccccc-CHHHHHHHHHHHHHHHhhcCCCCeeeEEEE
Confidence            4567778999999999999999999985       12357778886432 233346788999999999 89999999999


Q ss_pred             eeCCCceEEEEeeCCCCCHHHHhhcCCC---------------------cccCHHHHHHHHHHHHHHhhhhhcCCCCccc
Q psy12580        168 VNSPPDLVVISQYMAWGSLYALLHEGAG---------------------IVVDFAQALRFAVDVARGMAFLHSLERIIPQ  226 (239)
Q Consensus       168 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~---------------------~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivH  226 (239)
                      +...+..++||||+++|+|.+++.....                     ..+++..++.++.|++.||.|||+.|  |+|
T Consensus       118 ~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~--ivH  195 (344)
T 1rjb_A          118 CTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKS--CVH  195 (344)
T ss_dssp             ECSSSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHTT--EEE
T ss_pred             EeeCCccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHhCC--ccc
Confidence            9999999999999999999999987542                     23789999999999999999999999  999


Q ss_pred             CCCCCccceee
Q psy12580        227 YQLNSRHVMVY  237 (239)
Q Consensus       227 rdikp~Nill~  237 (239)
                      |||||+|||++
T Consensus       196 ~Dikp~NIll~  206 (344)
T 1rjb_A          196 RDLAARNVLVT  206 (344)
T ss_dssp             TTCSGGGEEEE
T ss_pred             CCCChhhEEEc
Confidence            99999999996

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.94  E-value=1.1e-26  Score=184.18  Aligned_cols=137  Identities=23%  Similarity=0.368  Sum_probs=118.9

Q ss_pred             cCCCCCCCcccccccCCCCCCceeeccCCC------ceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeC
Q psy12580         97 KGISLNDLSLHTKISSGPNGDTWRGRWQKN------DIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNS  170 (239)
Q Consensus        97 ~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~------~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~  170 (239)
                      .++....|...+.||+|+||.||+|.+...      .+++|.+... ........+.+|+.++..++||||+++++++..
T Consensus        39 ~~i~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~  117 (333)
T 1mqb_A           39 TEIHPSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAG-YTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISK  117 (333)
T ss_dssp             CBCCTTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTT-CCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECS
T ss_pred             ccCChHHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCC-CCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEec
Confidence            456778889999999999999999987432      3777877543 234445678999999999999999999999999


Q ss_pred             CCceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        171 PPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       171 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .+..++||||+++|+|.+++.... ..+++..++.++.|++.||.|||+.+  |+||||||+|||++
T Consensus       118 ~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH~~~--ivH~Dikp~NIl~~  181 (333)
T 1mqb_A          118 YKPMMIITEYMENGALDKFLREKD-GEFSVLQLVGMLRGIAAGMKYLANMN--YVHRDLAARNILVN  181 (333)
T ss_dssp             SSSEEEEEECCTTEEHHHHHHHTT-TCSCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEEC
T ss_pred             CCCcEEEEeCCCCCcHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHhCC--eeCCCCChheEEEC
Confidence            999999999999999999998754 25899999999999999999999999  99999999999986

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.94  E-value=7.7e-27  Score=179.29  Aligned_cols=135  Identities=24%  Similarity=0.408  Sum_probs=119.0

Q ss_pred             cCCCCCCCcccccccCCCCCCceeeccC-CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceE
Q psy12580         97 KGISLNDLSLHTKISSGPNGDTWRGRWQ-KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLV  175 (239)
Q Consensus        97 ~~~~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~  175 (239)
                      +.++.++|.+.+.||+|+||.||++.+. +..+++|.+......   .+.+.+|+.+++.++||||+++++++...+..+
T Consensus         3 ~~i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~---~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   79 (267)
T 3t9t_A            3 WVIDPSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMS---EEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPIC   79 (267)
T ss_dssp             CBCCGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTTBC---HHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCE
T ss_pred             eEEchhheeeeeEecCCCceeEEEEEecCCCeEEEEEccccCCC---HHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeE
Confidence            3456788999999999999999999884 456778888654332   357889999999999999999999999999999


Q ss_pred             EEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        176 VISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       176 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +||||+++++|.+++....+ .+++..+..++.|++.||.|||+.+  |+||||||+||+++
T Consensus        80 lv~e~~~~~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~l~~lH~~~--i~H~dl~p~Nili~  138 (267)
T 3t9t_A           80 LVTEFMEHGCLSDYLRTQRG-LFAAETLLGMCLDVCEGMAYLEEAC--VIHRDLAARNCLVG  138 (267)
T ss_dssp             EEECCCTTCBHHHHHHHTTT-CCCHHHHHHHHHHHHHHHHHHHHTT--CCCSSCCGGGEEEC
T ss_pred             EEEeCCCCCcHHHHHhhCcc-cCCHHHHHHHHHHHHHHHHHHHhCC--cccCCCchheEEEC
Confidence            99999999999999987542 5899999999999999999999999  99999999999986

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=99.94  E-value=4.5e-27  Score=185.52  Aligned_cols=139  Identities=23%  Similarity=0.358  Sum_probs=110.9

Q ss_pred             cCCCCCCCcccccccCCCCCCceeeccCCC-----ceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCC
Q psy12580         97 KGISLNDLSLHTKISSGPNGDTWRGRWQKN-----DIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSP  171 (239)
Q Consensus        97 ~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~-----~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~  171 (239)
                      ..+...+|.+.+.||+|+||.||+|.+...     .+++|++..........+.+.+|+.+++.++||||+++++++...
T Consensus        18 ~~i~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~   97 (323)
T 3qup_A           18 VLIPEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRS   97 (323)
T ss_dssp             TBCC---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC
T ss_pred             cccChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeecc
Confidence            345667899999999999999999987432     578888876655555667899999999999999999999999876


Q ss_pred             Cce------EEEEeeCCCCCHHHHhhcCC----CcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        172 PDL------VVISQYMAWGSLYALLHEGA----GIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       172 ~~~------~lv~e~~~~gsL~~~l~~~~----~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ...      ++||||+++|+|.+++....    ...+++..++.++.|++.||.|||+.|  |+||||||+|||++
T Consensus        98 ~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~--ivH~Dikp~NIli~  171 (323)
T 3qup_A           98 RAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSSRN--FIHRDLAARNCMLA  171 (323)
T ss_dssp             -------CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSGGGEEEC
T ss_pred             ccccCCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHHcCC--cccCCCCcceEEEc
Confidence            644      99999999999999996422    124899999999999999999999999  99999999999986

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=99.94  E-value=1e-26  Score=180.81  Aligned_cols=136  Identities=20%  Similarity=0.282  Sum_probs=117.7

Q ss_pred             CCCCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeC----CCc
Q psy12580        100 SLNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNS----PPD  173 (239)
Q Consensus       100 ~~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~----~~~  173 (239)
                      ....|.+.+.||+|+||.||+|...  +..+++|.+..........+.+.+|+.+++.++||||+++++++..    ...
T Consensus        24 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~  103 (290)
T 1t4h_A           24 DGRFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKC  103 (290)
T ss_dssp             TSCEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEE
T ss_pred             CceeEEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCce
Confidence            3455778889999999999999874  3556678877666666667789999999999999999999998754    346


Q ss_pred             eEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        174 LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +++||||+++|+|.+++....  .+++..++.++.|++.||.|||+.+++|+||||||+|||++
T Consensus       104 ~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~~~i~H~dikp~Nil~~  165 (290)
T 1t4h_A          104 IVLVTELMTSGTLKTYLKRFK--VMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFIT  165 (290)
T ss_dssp             EEEEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHTSSSCCCCSCCCGGGEEES
T ss_pred             EEEEEEecCCCCHHHHHHHcc--CCCHHHHHHHHHHHHHHHHHHHcCCCCEEECCCCHHHEEEE
Confidence            899999999999999998755  68999999999999999999999877799999999999996

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=99.94  E-value=7.2e-27  Score=187.39  Aligned_cols=135  Identities=11%  Similarity=0.134  Sum_probs=114.6

Q ss_pred             ccCCCCCCCcccccccCCCCCCceeec-------cCCCceeeeeeeeccCCchHHHHHHHHHhHhhhcC---CCceeeee
Q psy12580         96 HKGISLNDLSLHTKISSGPNGDTWRGR-------WQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFS---HPNVLPVI  165 (239)
Q Consensus        96 ~~~~~~~~~~~~~~ig~g~~g~v~~~~-------~~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~---h~~iv~l~  165 (239)
                      ...+....|.+.+.||+|+||.||+|.       ..+..+++|++...     ....+..|..++..+.   |+||++++
T Consensus        59 ~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~-----~~~~~~~e~~~~~~l~~~~~~~iv~~~  133 (365)
T 3e7e_A           59 EFQLGSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPA-----NPWEFYIGTQLMERLKPSMQHMFMKFY  133 (365)
T ss_dssp             EEECSSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSC-----CHHHHHHHHHHHHHSCGGGGGGBCCEE
T ss_pred             eEEECCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCC-----ChhHHHHHHHHHHHhhhhhhhhhhhhh
Confidence            344566789999999999999999994       24567888887532     2345777888887776   89999999


Q ss_pred             eeeeCCCceEEEEeeCCCCCHHHHhhcC---CCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        166 GCVNSPPDLVVISQYMAWGSLYALLHEG---AGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       166 ~~~~~~~~~~lv~e~~~~gsL~~~l~~~---~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +++...+..++||||+++|+|.+++...   ....+++..++.++.|++.||+|||+.+  ||||||||+|||++
T Consensus       134 ~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH~~~--ivHrDiKp~NIll~  206 (365)
T 3e7e_A          134 SAHLFQNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVHDCE--IIHGDIKPDNFILG  206 (365)
T ss_dssp             EEEECSSCEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHHTTT--EECCCCSGGGEEEC
T ss_pred             eeeecCCCcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHhhCC--eecCCCCHHHEEec
Confidence            9999999999999999999999999741   2236999999999999999999999999  99999999999996

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=99.94  E-value=4.4e-27  Score=197.00  Aligned_cols=138  Identities=14%  Similarity=0.107  Sum_probs=120.6

Q ss_pred             CCCCCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccC-CchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCce
Q psy12580         98 GISLNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNC-TPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDL  174 (239)
Q Consensus        98 ~~~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~  174 (239)
                      .+..++|...+.||+|+||.||+|..  .+..+++|++..... .......+.+|+.++..++||||+++++++...+.+
T Consensus       180 ~~~~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l  259 (576)
T 2acx_A          180 PVTKNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDAL  259 (576)
T ss_dssp             CCCGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred             CccccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEE
Confidence            45667899999999999999999987  457788898865422 122335678899999999999999999999999999


Q ss_pred             EEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        175 VVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       175 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ++||||+++|+|.+++.......+++..++.++.||+.||+|||+.|  ||||||||+|||++
T Consensus       260 ~lVmEy~~gg~L~~~l~~~~~~~l~e~~~~~i~~qIl~aL~yLH~~g--IvHrDLKPeNILld  320 (576)
T 2acx_A          260 CLVLTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLHRER--IVYRDLKPENILLD  320 (576)
T ss_dssp             EEEECCCCSCBHHHHHHSSSSCCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEEC
T ss_pred             EEEEEcCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCC--EeccCCchheEEEe
Confidence            99999999999999998765446999999999999999999999999  99999999999997

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=99.94  E-value=6.9e-27  Score=194.95  Aligned_cols=133  Identities=14%  Similarity=0.301  Sum_probs=114.2

Q ss_pred             CCCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCc-----------hHHHHHHHHHhHhhhcCCCceeeeeee
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTP-----------RVSRDFNEEFPKLRIFSHPNVLPVIGC  167 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~-----------~~~~~~~~e~~~l~~l~h~~iv~l~~~  167 (239)
                      ...|.+.+.||+|+||.||+|...  +..+++|++.......           ...+.+.+|+.+++.++||||++++++
T Consensus        35 ~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~  114 (504)
T 3q5i_A           35 GESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFDV  114 (504)
T ss_dssp             GGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred             ccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEEE
Confidence            467889999999999999999873  4678889886543221           234678899999999999999999999


Q ss_pred             eeCCCceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        168 VNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       168 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +......++|||||++|+|.+++....  .+++..+..++.|++.||.|||+.+  |+||||||+|||++
T Consensus       115 ~~~~~~~~lv~e~~~gg~L~~~l~~~~--~~~~~~~~~i~~qi~~~l~~lH~~~--ivH~Dlkp~Nil~~  180 (504)
T 3q5i_A          115 FEDKKYFYLVTEFYEGGELFEQIINRH--KFDECDAANIMKQILSGICYLHKHN--IVHRDIKPENILLE  180 (504)
T ss_dssp             EECSSEEEEEEECCTTCBHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEES
T ss_pred             EEcCCEEEEEEecCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCC--eEeCCCcHHHEEEe
Confidence            999999999999999999999998765  6999999999999999999999999  99999999999986

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=99.94  E-value=9.4e-27  Score=183.43  Aligned_cols=134  Identities=22%  Similarity=0.295  Sum_probs=115.1

Q ss_pred             CCCCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCC--ceE
Q psy12580        100 SLNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP--DLV  175 (239)
Q Consensus       100 ~~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~--~~~  175 (239)
                      ....|.+.+.||+|+||.||+|...  +..+++|++..... ....+.+.+|+.+++.++||||+++++++....  ..+
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   85 (319)
T 4euu_A            7 SNHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISF-LRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKV   85 (319)
T ss_dssp             SSEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGG-GSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEE
T ss_pred             CCCCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccc-cchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEE
Confidence            3467889999999999999999884  67788898865432 223466789999999999999999999987655  789


Q ss_pred             EEEeeCCCCCHHHHhhcCCC-cccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCcccee
Q psy12580        176 VISQYMAWGSLYALLHEGAG-IVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV  236 (239)
Q Consensus       176 lv~e~~~~gsL~~~l~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill  236 (239)
                      +||||+++|+|.+++..... ..+++..++.++.|++.||.|||+.+  |+||||||+|||+
T Consensus        86 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~--ivH~Dlkp~NIll  145 (319)
T 4euu_A           86 LIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENG--IVHRNIKPGNIMR  145 (319)
T ss_dssp             EEEECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEE
T ss_pred             EEEeCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHCC--EecCCCCHHHEEE
Confidence            99999999999999987432 23899999999999999999999999  9999999999998

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=99.94  E-value=1.6e-26  Score=181.78  Aligned_cols=130  Identities=18%  Similarity=0.243  Sum_probs=114.0

Q ss_pred             CCCccc-ccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhc-CCCceeeeeeeeeCCCceEEE
Q psy12580        102 NDLSLH-TKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIF-SHPNVLPVIGCVNSPPDLVVI  177 (239)
Q Consensus       102 ~~~~~~-~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~l~~~~~~~~~~~lv  177 (239)
                      +.|.+. +.||+|+||.||+|..  .+..+++|++....  ......+.+|+.++.++ +||||+++++++...+..++|
T Consensus        12 ~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~lv   89 (316)
T 2ac3_A           12 DVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQP--GHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYLV   89 (316)
T ss_dssp             TSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCS--SCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             eeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCc--chhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEE
Confidence            556664 7899999999999986  46778889886543  23346788999999985 799999999999999999999


Q ss_pred             EeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        178 SQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       178 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |||+++|+|.+++....  .+++..+..++.|++.||.|||+.+  |+||||||+|||++
T Consensus        90 ~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~~l~~lH~~~--ivH~dlkp~Nil~~  145 (316)
T 2ac3_A           90 FEKMRGGSILSHIHKRR--HFNELEASVVVQDVASALDFLHNKG--IAHRDLKPENILCE  145 (316)
T ss_dssp             EECCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCGGGEEES
T ss_pred             EEcCCCCcHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHhCC--ceeCCCCHHHEEEc
Confidence            99999999999998765  6899999999999999999999999  99999999999986

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=99.94  E-value=1.5e-26  Score=183.20  Aligned_cols=135  Identities=14%  Similarity=0.198  Sum_probs=120.1

Q ss_pred             CCCCCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEE
Q psy12580         99 ISLNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVV  176 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~l  176 (239)
                      ...++|.+.+.||+|+||.||+|...  +..+++|.+..........+.+.+|+.+++.++||||+++++++...+..++
T Consensus        22 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l  101 (331)
T 4aaa_A           22 QSMEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYL  101 (331)
T ss_dssp             BCGGGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred             hhhhhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEEE
Confidence            34577899999999999999999874  5678889887665555556778899999999999999999999999999999


Q ss_pred             EEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        177 ISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       177 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||||+++++|.+++....  .+++..+..++.|++.||.|||+.|  |+||||||+|||++
T Consensus       102 v~e~~~~~~l~~~~~~~~--~~~~~~~~~~~~qi~~~l~~LH~~~--ivH~dlkp~Nil~~  158 (331)
T 4aaa_A          102 VFEFVDHTILDDLELFPN--GLDYQVVQKYLFQIINGIGFCHSHN--IIHRDIKPENILVS  158 (331)
T ss_dssp             EEECCSEEHHHHHHHSTT--CCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCGGGEEEC
T ss_pred             EEecCCcchHHHHHhhcc--CCCHHHHHHHHHHHHHHHHHHHHCC--EEccCcChheEEEc
Confidence            999999999988877655  6899999999999999999999999  99999999999986

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=99.94  E-value=2.8e-27  Score=185.77  Aligned_cols=133  Identities=16%  Similarity=0.261  Sum_probs=115.6

Q ss_pred             CCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCC-chHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCc----
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCT-PRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPD----  173 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~----  173 (239)
                      .+.|.+.+.||+|+||.||++..  .+..+++|++...... ......+.+|+.++..++||||+++++++.....    
T Consensus        11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~   90 (311)
T 3ork_A           11 SDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPL   90 (311)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEE
T ss_pred             cCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCcc
Confidence            46788999999999999999985  4567888988664332 3345678899999999999999999999866543    


Q ss_pred             eEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        174 LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .++||||+++|+|.+++....  .+++..++.++.|++.||.|||+.+  |+||||||+|||++
T Consensus        91 ~~lv~e~~~g~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~--ivH~dlkp~Nil~~  150 (311)
T 3ork_A           91 PYIVMEYVDGVTLRDIVHTEG--PMTPKRAIEVIADACQALNFSHQNG--IIHRDVKPANIMIS  150 (311)
T ss_dssp             EEEEEECCCEEEHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCGGGEEEE
T ss_pred             cEEEEecCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCC--CCcCCCCHHHEEEc
Confidence            499999999999999998765  6899999999999999999999999  99999999999986

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=99.94  E-value=1.3e-26  Score=181.91  Aligned_cols=141  Identities=22%  Similarity=0.368  Sum_probs=120.8

Q ss_pred             ccccCCCCCCCcccccccCCCCCCceeecc-------CCCceeeeeeeeccCCchHHHHHHHHHhHhhhc-CCCceeeee
Q psy12580         94 SRHKGISLNDLSLHTKISSGPNGDTWRGRW-------QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIF-SHPNVLPVI  165 (239)
Q Consensus        94 ~~~~~~~~~~~~~~~~ig~g~~g~v~~~~~-------~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~l~  165 (239)
                      ...+.+...+|.+.+.||+|+||.||+|.+       .+..+++|.+... ......+.+.+|+.++..+ +||||++++
T Consensus        15 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~E~~~l~~l~~h~~i~~~~   93 (313)
T 1t46_A           15 DHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPS-AHLTEREALMSELKVLSYLGNHMNIVNLL   93 (313)
T ss_dssp             CGGGBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTT-CCHHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             ccccccChhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcc-hhHHHHHHHHHHHHHHhhcccCCCeeeEE
Confidence            344566778899999999999999999974       2356777887543 2334457789999999999 899999999


Q ss_pred             eeeeCCCceEEEEeeCCCCCHHHHhhcCCC----------------cccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCC
Q psy12580        166 GCVNSPPDLVVISQYMAWGSLYALLHEGAG----------------IVVDFAQALRFAVDVARGMAFLHSLERIIPQYQL  229 (239)
Q Consensus       166 ~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~----------------~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdi  229 (239)
                      +++...+..++||||+++|+|.+++.....                ..+++..++.++.|++.||.|||+.+  |+||||
T Consensus        94 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~--i~H~dl  171 (313)
T 1t46_A           94 GACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKN--CIHRDL  171 (313)
T ss_dssp             EEECSSSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCC
T ss_pred             EEEecCCCcEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHCC--eecCCC
Confidence            999999999999999999999999987542                14899999999999999999999999  999999


Q ss_pred             CCccceee
Q psy12580        230 NSRHVMVY  237 (239)
Q Consensus       230 kp~Nill~  237 (239)
                      ||+|||++
T Consensus       172 kp~Nil~~  179 (313)
T 1t46_A          172 AARNILLT  179 (313)
T ss_dssp             SGGGEEEE
T ss_pred             ccceEEEc
Confidence            99999996

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=99.94  E-value=1.5e-26  Score=179.10  Aligned_cols=137  Identities=22%  Similarity=0.369  Sum_probs=115.2

Q ss_pred             ccCCCCCCCcccccccCCCCCCceeeccCC-----CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeC
Q psy12580         96 HKGISLNDLSLHTKISSGPNGDTWRGRWQK-----NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNS  170 (239)
Q Consensus        96 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~-----~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~  170 (239)
                      ...+....|.+.+.||+|+||.||+|.+..     ..+++|..... ......+.+.+|+.+++.++||||+++++++. 
T Consensus         9 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-   86 (281)
T 1mp8_A            9 DYEIQRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNC-TSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-   86 (281)
T ss_dssp             CCBCCGGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTT-TSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-
T ss_pred             ceEEehHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEecccc-CCHHHHHHHHHHHHHHHhCCCCccceEEEEEc-
Confidence            345667889999999999999999998742     23555665432 23444567899999999999999999999984 


Q ss_pred             CCceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        171 PPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       171 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .+..++||||+++|+|.+++.... ..+++..+..++.|++.||.|||+.+  |+||||||+|||++
T Consensus        87 ~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~--i~H~dlkp~Nil~~  150 (281)
T 1mp8_A           87 ENPVWIIMELCTLGELRSFLQVRK-YSLDLASLILYAYQLSTALAYLESKR--FVHRDIAARNVLVS  150 (281)
T ss_dssp             SSSCEEEEECCTTEEHHHHHHHTT-TTSCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSGGGEEEE
T ss_pred             cCccEEEEecCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHhCC--eecccccHHHEEEC
Confidence            457899999999999999998654 25899999999999999999999999  99999999999997

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=99.94  E-value=5.1e-27  Score=183.22  Aligned_cols=133  Identities=18%  Similarity=0.282  Sum_probs=109.5

Q ss_pred             CCCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCc------------------------hHHHHHHHHHhHh
Q psy12580        100 SLNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTP------------------------RVSRDFNEEFPKL  153 (239)
Q Consensus       100 ~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~------------------------~~~~~~~~e~~~l  153 (239)
                      ...+|.+.+.||+|+||.||+|..  .+..+++|++.......                        ...+.+.+|+.++
T Consensus        11 ~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l   90 (298)
T 2zv2_A           11 QLNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAIL   90 (298)
T ss_dssp             EETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHH
T ss_pred             eecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHH
Confidence            346789999999999999999976  45678889886543211                        1235688999999


Q ss_pred             hhcCCCceeeeeeeeeC--CCceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCC
Q psy12580        154 RIFSHPNVLPVIGCVNS--PPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNS  231 (239)
Q Consensus       154 ~~l~h~~iv~l~~~~~~--~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp  231 (239)
                      +.++||||+++++++..  .+..++||||+++|+|.+++...   .+++..+..++.|++.||.|||+.+  |+||||||
T Consensus        91 ~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~---~~~~~~~~~~~~qi~~~l~~lH~~~--ivH~Dlkp  165 (298)
T 2zv2_A           91 KKLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTLK---PLSEDQARFYFQDLIKGIEYLHYQK--IIHRDIKP  165 (298)
T ss_dssp             HTCCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSCSS---CCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCG
T ss_pred             HhCCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhhcC---CCCHHHHHHHHHHHHHHHHHHHHCC--eeccCCCH
Confidence            99999999999999976  45899999999999998876543   5899999999999999999999999  99999999


Q ss_pred             ccceee
Q psy12580        232 RHVMVY  237 (239)
Q Consensus       232 ~Nill~  237 (239)
                      +|||++
T Consensus       166 ~Nil~~  171 (298)
T 2zv2_A          166 SNLLVG  171 (298)
T ss_dssp             GGEEEC
T ss_pred             HHEEEC
Confidence            999986

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=99.94  E-value=1.6e-26  Score=181.12  Aligned_cols=132  Identities=21%  Similarity=0.445  Sum_probs=115.5

Q ss_pred             CCCCCCCcccccccCCCCCCceeeccCCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEE
Q psy12580         98 GISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVI  177 (239)
Q Consensus        98 ~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv  177 (239)
                      .++..+|.+.+.||+|+||.||++.+.+..+++|.+..    ....+.+.+|+.+++.++||||+++++++..  ..++|
T Consensus         4 ~i~~~~~~~~~~lg~G~~g~V~~~~~~~~~vavK~~~~----~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~--~~~lv   77 (307)
T 2eva_A            4 MIDYKEIEVEEVVGRGAFGVVCKAKWRAKDVAIKQIES----ESERKAFIVELRQLSRVNHPNIVKLYGACLN--PVCLV   77 (307)
T ss_dssp             BCCGGGEEEEEEEECCSSSEEEEEEETTEEEEEEECSS----TTHHHHHHHHHHHHHHCCCTTBCCEEEBCTT--TTEEE
T ss_pred             cCCHhHeeeeeEeecCCCceEEEEEECCeeEEEEEecC----hhHHHHHHHHHHHHhcCCCCCcCeEEEEEcC--CcEEE
Confidence            35667889999999999999999999888889988753    2344678999999999999999999998873  48999


Q ss_pred             EeeCCCCCHHHHhhcCCC-cccCHHHHHHHHHHHHHHhhhhhc---CCCCcccCCCCCccceee
Q psy12580        178 SQYMAWGSLYALLHEGAG-IVVDFAQALRFAVDVARGMAFLHS---LERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       178 ~e~~~~gsL~~~l~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~---~~~~ivHrdikp~Nill~  237 (239)
                      |||+++|+|.+++..... ..+++..++.++.|+++||.|||+   .+  |+||||||+|||++
T Consensus        78 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~--ivH~dlkp~NIll~  139 (307)
T 2eva_A           78 MEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKA--LIHRDLKPPNLLLV  139 (307)
T ss_dssp             EECCTTCBHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCSSSC--CCCCCCSGGGEEEE
T ss_pred             EEcCCCCCHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCCCCC--eecCCCChhHEEEe
Confidence            999999999999987542 247889999999999999999999   77  99999999999986

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=99.94  E-value=2.4e-27  Score=194.88  Aligned_cols=136  Identities=16%  Similarity=0.187  Sum_probs=110.7

Q ss_pred             CCCCCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccC-CchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCce
Q psy12580         98 GISLNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNC-TPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDL  174 (239)
Q Consensus        98 ~~~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~  174 (239)
                      .+..++|.+.+.||+|+||.||+|..  .+..+++|++..... .......+.+|+.+++.++||||+++++++...+.+
T Consensus       144 ~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~  223 (446)
T 4ejn_A          144 RVTMNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRL  223 (446)
T ss_dssp             CCCGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETTEE
T ss_pred             CCChHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEE
Confidence            34557899999999999999999986  456788898865422 233345678899999999999999999999999999


Q ss_pred             EEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhc-CCCCcccCCCCCccceee
Q psy12580        175 VVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS-LERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       175 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~-~~~~ivHrdikp~Nill~  237 (239)
                      ++||||+++|+|.+++....  .+++..+..++.|++.||+|||+ .|  ||||||||+|||++
T Consensus       224 ~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~~g--iiHrDlkp~NIll~  283 (446)
T 4ejn_A          224 CFVMEYANGGELFFHLSRER--VFSEDRARFYGAEIVSALDYLHSEKN--VVYRDLKLENLMLD  283 (446)
T ss_dssp             EEEECCCSSCBHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHHHHTC--CCCCCCCGGGEEEC
T ss_pred             EEEEeeCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHhhcCC--EEECCCCHHHEEEC
Confidence            99999999999999998765  68999999999999999999998 89  99999999999996

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=99.94  E-value=1.3e-26  Score=182.74  Aligned_cols=132  Identities=20%  Similarity=0.334  Sum_probs=116.9

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCc----hHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceE
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTP----RVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLV  175 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~----~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~  175 (239)
                      +.|.+.+.||+|+||.||+|..  .+..+++|++.......    ...+.+.+|+.++..++||||+++++++...+..+
T Consensus        12 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   91 (321)
T 2a2a_A           12 DFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTDVV   91 (321)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             ccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEEE
Confidence            4578889999999999999987  35678888886653322    13467889999999999999999999999999999


Q ss_pred             EEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        176 VISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       176 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +||||+++++|.+++....  .+++..+..++.|++.||.|||+.+  |+||||||+|||++
T Consensus        92 lv~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~aL~~lH~~~--ivH~dikp~NIl~~  149 (321)
T 2a2a_A           92 LILELVSGGELFDFLAQKE--SLSEEEATSFIKQILDGVNYLHTKK--IAHFDLKPENIMLL  149 (321)
T ss_dssp             EEECCCCSCBHHHHHHTCS--CEEHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEES
T ss_pred             EEEEcCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCChHHEEEe
Confidence            9999999999999998765  6999999999999999999999999  99999999999985

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=99.94  E-value=3.7e-27  Score=185.61  Aligned_cols=141  Identities=24%  Similarity=0.488  Sum_probs=123.9

Q ss_pred             cccccCCCCCCCcccccccCCCCCCceeeccCCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCC
Q psy12580         93 LSRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP  172 (239)
Q Consensus        93 ~~~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~  172 (239)
                      ..+.+.+..++|.+.+.||+|+||.||+|.+.+ .+++|++..........+.+.+|+.+++.++||||+++++++...+
T Consensus        24 ~~~~~~i~~~~~~~~~~lg~G~~g~V~~~~~~~-~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~  102 (319)
T 2y4i_B           24 FLQEWDIPFEQLEIGELIGKGRFGQVYHGRWHG-EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPP  102 (319)
T ss_dssp             CGGGSSSCCSCEECCCBCCCSSSSEEEEEEESS-SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEECSS
T ss_pred             ccccccCCHHHeEEeeEeccCCceEEEEEEEcC-eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEecCC
Confidence            345667888999999999999999999998865 5888888665444444456788999999999999999999999999


Q ss_pred             ceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        173 DLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       173 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ..++||||+++++|.+++.... ..+++..+..++.|++.||.|||+.+  |+||||||+|||++
T Consensus       103 ~~~iv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~al~~lH~~~--i~H~dlkp~NIl~~  164 (319)
T 2y4i_B          103 HLAIITSLCKGRTLYSVVRDAK-IVLDVNKTRQIAQEIVKGMGYLHAKG--ILHKDLKSKNVFYD  164 (319)
T ss_dssp             CEEEECBCCCSEEHHHHTTSSC-CCCCSHHHHHHHHHHHHHHHHHHHTT--CCCCCCCSTTEEEC
T ss_pred             ceEEEeecccCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHhCC--ccccCCChhhEEEe
Confidence            9999999999999999998754 35899999999999999999999999  99999999999986

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=99.94  E-value=9.3e-27  Score=185.62  Aligned_cols=128  Identities=16%  Similarity=0.271  Sum_probs=108.9

Q ss_pred             CCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEe
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQ  179 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e  179 (239)
                      +.|.+.+.||+|+||.||+|...  +..+++|++....    ..+.+.+|+.++..++||||+++++++...+..++|||
T Consensus        53 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~----~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e  128 (349)
T 2w4o_A           53 DFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV----DKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLVLE  128 (349)
T ss_dssp             GTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC--------------CHHHHHCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred             CcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch----hHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEEEEE
Confidence            56888999999999999999984  4567888886432    23567789999999999999999999999999999999


Q ss_pred             eCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       180 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |+++|+|.+++....  .+++..+..++.|++.||.|||+.+  |+||||||+|||++
T Consensus       129 ~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~~L~~LH~~~--ivH~Dikp~NIll~  182 (349)
T 2w4o_A          129 LVTGGELFDRIVEKG--YYSERDAADAVKQILEAVAYLHENG--IVHRDLKPENLLYA  182 (349)
T ss_dssp             CCCSCBHHHHHTTCS--SCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCGGGEEES
T ss_pred             eCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCC--eEecCCCcccEEEe
Confidence            999999999998765  6899999999999999999999999  99999999999995

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=99.94  E-value=1.7e-26  Score=186.28  Aligned_cols=132  Identities=15%  Similarity=0.294  Sum_probs=115.5

Q ss_pred             CCCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEE
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVIS  178 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~  178 (239)
                      .+.|.+.+.||+|+||.||+|...  +..+++|++....  ......+.+|+.++..++||||+++++++......++||
T Consensus        50 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~--~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~  127 (387)
T 1kob_A           50 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPY--PLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLIL  127 (387)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS--HHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEE
T ss_pred             ccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccc--hhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEEE
Confidence            357889999999999999999873  4566777775432  333457889999999999999999999999999999999


Q ss_pred             eeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        179 QYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       179 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||+++|+|.+++.... ..+++..+..++.||+.||+|||+.+  |+||||||+|||++
T Consensus       128 E~~~gg~L~~~l~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~g--ivHrDlkp~NIll~  183 (387)
T 1kob_A          128 EFLSGGELFDRIAAED-YKMSEAEVINYMRQACEGLKHMHEHS--IVHLDIKPENIMCE  183 (387)
T ss_dssp             ECCCCCBHHHHTTCTT-CCBCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEES
T ss_pred             EcCCCCcHHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHHhCC--eeecccchHHeEEe
Confidence            9999999999998654 25899999999999999999999999  99999999999996

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=99.94  E-value=2e-26  Score=182.01  Aligned_cols=122  Identities=11%  Similarity=0.259  Sum_probs=109.6

Q ss_pred             cccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcC-CCceeeeeeeeeCCCceEEEEeeCCC
Q psy12580        107 HTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFS-HPNVLPVIGCVNSPPDLVVISQYMAW  183 (239)
Q Consensus       107 ~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~-h~~iv~l~~~~~~~~~~~lv~e~~~~  183 (239)
                      .+.||+|+||.||+|...  +..+++|++...     ....+.+|+.++..+. ||||+++++++......++||||+++
T Consensus        16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-----~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~~~   90 (325)
T 3kn6_A           16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISKR-----MEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNG   90 (325)
T ss_dssp             SCCSEEETTEEEEEEEETTTCCEEEEEEEEGG-----GHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCCS
T ss_pred             CCccccCCCeEEEEEEECCCCCEEEEEEEChh-----hhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEccCC
Confidence            367999999999999874  567888888532     3356778999999996 99999999999999999999999999


Q ss_pred             CCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        184 GSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       184 gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |+|.+++....  .+++..+..++.|++.||+|||+.+  |+||||||+|||++
T Consensus        91 ~~L~~~l~~~~--~~~~~~~~~i~~qi~~~l~~LH~~~--ivH~Dlkp~NIll~  140 (325)
T 3kn6_A           91 GELFERIKKKK--HFSETEASYIMRKLVSAVSHMHDVG--VVHRDLKPENLLFT  140 (325)
T ss_dssp             CBHHHHHHHCS--CCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEEE
T ss_pred             CcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCC--CeecCCCHHHEEEe
Confidence            99999998876  6999999999999999999999999  99999999999995

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=99.94  E-value=2.7e-27  Score=187.50  Aligned_cols=132  Identities=14%  Similarity=0.343  Sum_probs=115.1

Q ss_pred             CCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCC-chHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEE
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCT-PRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVI  177 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv  177 (239)
                      ...|.+.+.||+|+||.||+|..  .+..+++|++...... ......+.+|+.+++.++||||+++++++..++..++|
T Consensus         8 i~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv   87 (336)
T 3h4j_B            8 IGPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVMV   87 (336)
T ss_dssp             ETTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             cCCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence            46788999999999999999987  5577888988653211 11225688999999999999999999999999999999


Q ss_pred             EeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        178 SQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       178 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |||+ +|+|.+++....  .+++..++.++.|++.||.|||+.|  |+||||||+|||++
T Consensus        88 ~E~~-~g~l~~~l~~~~--~l~~~~~~~i~~qi~~aL~~LH~~g--ivH~Dlkp~NIll~  142 (336)
T 3h4j_B           88 IEYA-GGELFDYIVEKK--RMTEDEGRRFFQQIICAIEYCHRHK--IVHRDLKPENLLLD  142 (336)
T ss_dssp             ECCC-CEEHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHHT--CCCCCCSTTTEEEC
T ss_pred             EECC-CCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCC--eEecCCchhhEEEc
Confidence            9999 679999998765  6999999999999999999999999  99999999999986

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=99.94  E-value=1.8e-26  Score=186.59  Aligned_cols=134  Identities=10%  Similarity=0.136  Sum_probs=118.0

Q ss_pred             CCCCCCcccccccCCCCCCceeeccC-CCceeeeeeeeccCCchHHHHHHHHHhHhhhcC--CCceeeeeeeeeCCCceE
Q psy12580         99 ISLNDLSLHTKISSGPNGDTWRGRWQ-KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFS--HPNVLPVIGCVNSPPDLV  175 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~--h~~iv~l~~~~~~~~~~~  175 (239)
                      +....|.+.+.||+|+||.||++... +..+++|++..........+.+.+|+.++..+.  ||||+++++++...+.++
T Consensus        53 ~~~~~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~  132 (390)
T 2zmd_A           53 VKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIY  132 (390)
T ss_dssp             ETTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEE
T ss_pred             ccCCceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEE
Confidence            34456899999999999999999874 566788988766555666678999999999996  599999999999999999


Q ss_pred             EEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        176 VISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       176 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +||| +.+++|.+++....  .+++..+..++.||+.||.|||+.+  |+||||||+|||++
T Consensus       133 lv~E-~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~aL~~lH~~~--ivHrDlkp~NIll~  189 (390)
T 2zmd_A          133 MVME-CGNIDLNSWLKKKK--SIDPWERKSYWKNMLEAVHTIHQHG--IVHSDLKPANFLIV  189 (390)
T ss_dssp             EEEE-CCSEEHHHHHHHCS--SCCHHHHHHHHHHHHHHHHHHHTTT--CCCCCCCGGGEEES
T ss_pred             EEEe-cCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCC--eeecCCCHHHEEEE
Confidence            9999 55789999998876  6899999999999999999999999  99999999999984

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=99.94  E-value=1.3e-26  Score=180.30  Aligned_cols=135  Identities=19%  Similarity=0.329  Sum_probs=114.7

Q ss_pred             CCCCCCCcccc-cccCCCCCCceeecc----CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCC
Q psy12580         98 GISLNDLSLHT-KISSGPNGDTWRGRW----QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP  172 (239)
Q Consensus        98 ~~~~~~~~~~~-~ig~g~~g~v~~~~~----~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~  172 (239)
                      .++...|.+.+ .||+|+||.||+|.+    .+..+++|++..........+.+.+|+.+++.++||||+++++++ ..+
T Consensus        12 ~~~~~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-~~~   90 (291)
T 1xbb_A           12 YLDRKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGIC-EAE   90 (291)
T ss_dssp             BCCGGGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEE-ESS
T ss_pred             eecchhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEE-CCC
Confidence            34556778887 999999999999954    235678888876555555567899999999999999999999999 456


Q ss_pred             ceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        173 DLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       173 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ..++||||+++++|.+++....  .+++..+..++.|++.||.|||+.+  |+||||||+|||++
T Consensus        91 ~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~~l~~LH~~~--i~H~dikp~Nil~~  151 (291)
T 1xbb_A           91 SWMLVMEMAELGPLNKYLQQNR--HVKDKNIIELVHQVSMGMKYLEESN--FVHRDLAARNVLLV  151 (291)
T ss_dssp             SEEEEEECCTTEEHHHHHHHCT--TCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEEE
T ss_pred             CcEEEEEeCCCCCHHHHHHhCc--CCCHHHHHHHHHHHHHHHHHHHhCC--eEcCCCCcceEEEe
Confidence            7899999999999999998865  6899999999999999999999999  99999999999986

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=99.94  E-value=3.1e-26  Score=179.95  Aligned_cols=140  Identities=26%  Similarity=0.394  Sum_probs=115.1

Q ss_pred             ccCCCCCCCcccccccCCCCCCceeeccCC-----CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeC
Q psy12580         96 HKGISLNDLSLHTKISSGPNGDTWRGRWQK-----NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNS  170 (239)
Q Consensus        96 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~-----~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~  170 (239)
                      ...+...+|.+.+.||+|+||.||+|.+..     ..+++|.+..........+.+.+|+.+++.++||||+++++++..
T Consensus        28 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~  107 (313)
T 3brb_A           28 DVVIDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIE  107 (313)
T ss_dssp             TTBCCGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC
T ss_pred             hcccCHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEee
Confidence            344566889999999999999999997632     257888887665556666789999999999999999999999876


Q ss_pred             CC-----ceEEEEeeCCCCCHHHHhhcC----CCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        171 PP-----DLVVISQYMAWGSLYALLHEG----AGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       171 ~~-----~~~lv~e~~~~gsL~~~l~~~----~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .+     ..++||||+++|+|.+++...    ....+++..++.++.|+++||.|||+.+  |+||||||+|||++
T Consensus       108 ~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~--ivH~dikp~NIli~  181 (313)
T 3brb_A          108 MSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNRN--FLHRDLAARNCMLR  181 (313)
T ss_dssp             -------CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHHTTT--CCCCCCSGGGEEEC
T ss_pred             ccccCCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHHhCC--cccCCCCcceEEEc
Confidence            54     459999999999999999532    2236999999999999999999999999  99999999999986

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=99.94  E-value=2.5e-26  Score=179.52  Aligned_cols=135  Identities=22%  Similarity=0.339  Sum_probs=113.1

Q ss_pred             CCCCCCcccccccCCCCCCceeecc------CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCC-
Q psy12580         99 ISLNDLSLHTKISSGPNGDTWRGRW------QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSP-  171 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g~~g~v~~~~~------~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~-  171 (239)
                      +....|+..+.||+|+||.||+|.+      .+..+++|.+.... .....+.+.+|+.+++.++||||+++++++... 
T Consensus        18 ~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~   96 (302)
T 4e5w_A           18 FEKRFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPES-GGNHIADLKKEIEILRNLYHENIVKYKGICTEDG   96 (302)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC------CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC--
T ss_pred             hhhhhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccc-cchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCC
Confidence            4456688899999999999999983      45677888886543 223346788999999999999999999999776 


Q ss_pred             -CceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        172 -PDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       172 -~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                       ...++||||+++|+|.+++..... .+++..++.++.|++.||.|||+.+  |+||||||+|||++
T Consensus        97 ~~~~~lv~e~~~~~~L~~~l~~~~~-~~~~~~~~~~~~~i~~~l~~lH~~~--i~H~dikp~Nil~~  160 (302)
T 4e5w_A           97 GNGIKLIMEFLPSGSLKEYLPKNKN-KINLKQQLKYAVQICKGMDYLGSRQ--YVHRDLAARNVLVE  160 (302)
T ss_dssp             -CCEEEEEECCTTCBHHHHHHHHTT-TCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEEE
T ss_pred             CceEEEEEEeCCCCcHHHHHHhccc-cCCHHHHHHHHHHHHHHHHHhhcCC--cccCCCchheEEEc
Confidence             578999999999999999965432 5899999999999999999999999  99999999999986

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=99.94  E-value=1.4e-26  Score=189.62  Aligned_cols=132  Identities=11%  Similarity=0.131  Sum_probs=116.2

Q ss_pred             CCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCC-----Cc
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSP-----PD  173 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~-----~~  173 (239)
                      .++|.+.+.||+|+||.||+|..  .+..+++|++..........+.+.+|+.+++.++||||+++++++...     ..
T Consensus        25 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  104 (432)
T 3n9x_A           25 PDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFDE  104 (432)
T ss_dssp             CTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred             cCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCCe
Confidence            36789999999999999999986  346688888865544455567889999999999999999999999766     57


Q ss_pred             eEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        174 LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .++||||++ |+|.++++...  .+++..++.++.||+.||.|||+.|  |+||||||+|||++
T Consensus       105 ~~lv~e~~~-~~L~~~~~~~~--~l~~~~~~~i~~qil~aL~~LH~~g--ivHrDlkp~NILl~  163 (432)
T 3n9x_A          105 LYIVLEIAD-SDLKKLFKTPI--FLTEEHIKTILYNLLLGENFIHESG--IIHRDLKPANCLLN  163 (432)
T ss_dssp             EEEEEECCS-EEHHHHHHSSC--CCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEEC
T ss_pred             EEEEEecCC-cCHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHHCC--CCCCCCCHHHeEEC
Confidence            999999996 49999998765  6999999999999999999999999  99999999999986

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=99.94  E-value=8.4e-27  Score=180.26  Aligned_cols=136  Identities=22%  Similarity=0.415  Sum_probs=117.1

Q ss_pred             ccCCCCCCCcccccccCCCCCCceeeccCC-CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCce
Q psy12580         96 HKGISLNDLSLHTKISSGPNGDTWRGRWQK-NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDL  174 (239)
Q Consensus        96 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~-~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~  174 (239)
                      .+.+..++|.+.+.||+|+||.||+|...+ ..+++|.+.....   ..+.+.+|+.+++.++||||+++++++.. +..
T Consensus         7 ~~~v~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~---~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~   82 (279)
T 1qpc_A            7 EWEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSM---SPDAFLAEANLMKQLQHQRLVRLYAVVTQ-EPI   82 (279)
T ss_dssp             TTBCCGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSS---CHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSC
T ss_pred             hcccCHHhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCcc---cHHHHHHHHHHHHhCCCcCcceEEEEEcC-CCc
Confidence            455667889999999999999999998865 4677788754332   24678899999999999999999999864 468


Q ss_pred             EEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        175 VVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       175 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ++||||+++++|.+++....+..+++..+..++.|++.||.|||+.+  |+||||||+|||++
T Consensus        83 ~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~--i~H~dikp~Nil~~  143 (279)
T 1qpc_A           83 YIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERN--YIHRDLRAANILVS  143 (279)
T ss_dssp             EEEEECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEEC
T ss_pred             EEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHCC--eeccCCCHhhEEEc
Confidence            99999999999999998644335899999999999999999999999  99999999999986

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=99.94  E-value=1.2e-26  Score=182.70  Aligned_cols=133  Identities=13%  Similarity=0.252  Sum_probs=101.0

Q ss_pred             CCCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEE
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVIS  178 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~  178 (239)
                      .++|.+.+.||+|+||.||+|...  +..+++|.+..... ......+.+|+.+++.++||||+++++++...+..++||
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~   82 (317)
T 2pmi_A            4 SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSE-EGTPSTAIREISLMKELKHENIVRLYDVIHTENKLTLVF   82 (317)
T ss_dssp             ---------------CEEEEEECSSSCCEEEEEEEECCST-TCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEEEE
T ss_pred             ccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccc-cccHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEEEE
Confidence            457889999999999999999873  56788888865432 222356788999999999999999999999999999999


Q ss_pred             eeCCCCCHHHHhhcCC----CcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        179 QYMAWGSLYALLHEGA----GIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       179 e~~~~gsL~~~l~~~~----~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||++ |+|.+++....    ...+++..+..++.|++.||.|||+.|  |+||||||+|||++
T Consensus        83 e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~--ivH~Dlkp~NIl~~  142 (317)
T 2pmi_A           83 EFMD-NDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHENK--ILHRDLKPQNLLIN  142 (317)
T ss_dssp             ECCC-CBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEEC
T ss_pred             EecC-CCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHCC--eeeCCCChHHeEEc
Confidence            9998 59999987531    135899999999999999999999999  99999999999986

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=99.94  E-value=1.6e-26  Score=191.89  Aligned_cols=133  Identities=14%  Similarity=0.241  Sum_probs=118.4

Q ss_pred             CCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCC-chHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEE
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCT-PRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVI  177 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv  177 (239)
                      .+.|.+.+.||+|+||.||+|..  .+..+++|++...... ......+.+|+.+++.++||||+++++++...+..++|
T Consensus        25 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv  104 (484)
T 3nyv_A           25 SDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLV  104 (484)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             cCceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEE
Confidence            35688899999999999999987  4677888988655332 23456788999999999999999999999999999999


Q ss_pred             EeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        178 SQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       178 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |||+.+|+|.+++....  .+++..+..++.|++.||.|||+.+  |+||||||+|||++
T Consensus       105 ~e~~~~~~L~~~~~~~~--~~~~~~~~~i~~qi~~~l~~lH~~~--ivH~Dlkp~Nil~~  160 (484)
T 3nyv_A          105 GEVYTGGELFDEIISRK--RFSEVDAARIIRQVLSGITYMHKNK--IVHRDLKPENLLLE  160 (484)
T ss_dssp             ECCCCSCBHHHHHHTCS--CCBHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEES
T ss_pred             EecCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCC--eeeCCCCHHHEEEe
Confidence            99999999999998766  6999999999999999999999999  99999999999994

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=99.94  E-value=1.7e-26  Score=180.38  Aligned_cols=129  Identities=29%  Similarity=0.531  Sum_probs=110.5

Q ss_pred             CCCCCCcccccccCCCCCCceeeccCCCceeeeeeeeccCCchHHHHHHHHHhHhhh--cCCCceeeeeeeeeC----CC
Q psy12580         99 ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRI--FSHPNVLPVIGCVNS----PP  172 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~--l~h~~iv~l~~~~~~----~~  172 (239)
                      ...++|.+.+.||+|+||.||+|.+.+..+++|++...     ....+..|..++..  ++||||+++++++..    ..
T Consensus         5 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~vavK~~~~~-----~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~   79 (301)
T 3q4u_A            5 TVARDITLLECVGKGRYGEVWRGSWQGENVAVKIFSSR-----DEKSWFRETELYNTVMLRHENILGFIASDMTSRHSST   79 (301)
T ss_dssp             CCGGGCEEEEEEEECSSEEEEEEEETTEEEEEEEECGG-----GHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEE
T ss_pred             cccCcEEEEEeeccCCCcEEEEEEECCEEEEEEEeccc-----cchhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCc
Confidence            34567899999999999999999998889999988542     23455667777666  789999999998643    34


Q ss_pred             ceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhh--------cCCCCcccCCCCCccceee
Q psy12580        173 DLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH--------SLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       173 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH--------~~~~~ivHrdikp~Nill~  237 (239)
                      ..++||||+++|+|.++++..   .+++..+..++.|++.||.|||        +.+  |+||||||+|||++
T Consensus        80 ~~~lv~e~~~~g~L~~~l~~~---~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~--ivH~Dlkp~Nill~  147 (301)
T 3q4u_A           80 QLWLITHYHEMGSLYDYLQLT---TLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPA--IAHRDLKSKNILVK  147 (301)
T ss_dssp             EEEEEECCCTTCBHHHHHTTC---CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCE--EECSCCCGGGEEEC
T ss_pred             eeEEehhhccCCCHHHHHhhc---ccCHHHHHHHHHHHHHHHHHHHHhhhhccCCCC--eecCCCChHhEEEc
Confidence            689999999999999999654   4899999999999999999999        888  99999999999996

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=99.94  E-value=4.7e-26  Score=178.41  Aligned_cols=132  Identities=21%  Similarity=0.307  Sum_probs=115.6

Q ss_pred             CcccccccCCCCCCceeeccCCCceeeeeeeecc--CCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEeeC
Q psy12580        104 LSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRN--CTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYM  181 (239)
Q Consensus       104 ~~~~~~ig~g~~g~v~~~~~~~~~~~vk~~~~~~--~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~  181 (239)
                      +...+.||+|+||.||+|.+++..+++|.+....  ......+.+.+|+.+++.++||||+++++++...+..++||||+
T Consensus        33 ~~~~~~lg~G~~g~Vy~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~  112 (307)
T 2nru_A           33 SVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYM  112 (307)
T ss_dssp             TTTCCEEEECSSEEEEEEESSSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECC
T ss_pred             cccCCccccCCCeEEEEEEECCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCCCeEEEEEEEecCCceEEEEEec
Confidence            3445889999999999999988899999886542  22344577899999999999999999999999999999999999


Q ss_pred             CCCCHHHHhhcCC-CcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        182 AWGSLYALLHEGA-GIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       182 ~~gsL~~~l~~~~-~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ++|+|.+++.... ...+++..++.++.|++.||.|||+.+  |+||||||+|||++
T Consensus       113 ~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~--i~H~dlkp~Nili~  167 (307)
T 2nru_A          113 PNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHENH--HIHRDIKSANILLD  167 (307)
T ss_dssp             TTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCCGGGEEEC
T ss_pred             CCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhcCC--eecCCCCHHHEEEc
Confidence            9999999997432 235899999999999999999999999  99999999999986

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=99.94  E-value=1.7e-26  Score=182.10  Aligned_cols=140  Identities=19%  Similarity=0.319  Sum_probs=119.3

Q ss_pred             cccCCCCCCCcccccccCCCCCCceeeccC-------CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeee
Q psy12580         95 RHKGISLNDLSLHTKISSGPNGDTWRGRWQ-------KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGC  167 (239)
Q Consensus        95 ~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~-------~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~  167 (239)
                      ..+.+...+|.+.+.||+|+||.||+|.+.       +..+++|.+... ........+.+|+.+++.++||||++++++
T Consensus        18 ~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~   96 (322)
T 1p4o_A           18 DEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEA-ASMRERIEFLNEASVMKEFNCHHVVRLLGV   96 (322)
T ss_dssp             CTTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTT-SCHHHHHHHHHHHHHGGGCCCTTBCCEEEE
T ss_pred             hhhcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccc-cCHHHHHHHHHHHHHHHhcCCCCEeeeEEE
Confidence            345566788999999999999999999764       355777877533 233445678899999999999999999999


Q ss_pred             eeCCCceEEEEeeCCCCCHHHHhhcCC--------CcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        168 VNSPPDLVVISQYMAWGSLYALLHEGA--------GIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       168 ~~~~~~~~lv~e~~~~gsL~~~l~~~~--------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +...+..++||||+++|+|.+++....        ...+++..+..++.|++.||.|||+.|  |+||||||+|||++
T Consensus        97 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~--i~H~dikp~NIli~  172 (322)
T 1p4o_A           97 VSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANK--FVHRDLAARNCMVA  172 (322)
T ss_dssp             ECSSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHTT--CBCSCCSGGGEEEC
T ss_pred             EccCCccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHHCC--CccCCCccceEEEc
Confidence            999999999999999999999997522        124689999999999999999999999  99999999999986

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=99.94  E-value=2.2e-26  Score=184.27  Aligned_cols=135  Identities=15%  Similarity=0.283  Sum_probs=119.4

Q ss_pred             CCCCCCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceE
Q psy12580         98 GISLNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLV  175 (239)
Q Consensus        98 ~~~~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~  175 (239)
                      .+...+|.+.+.||+|+||.||++...  +..+++|++... ......+.+.+|+.+++.++||||+++++++...+..+
T Consensus        29 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~-~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~  107 (360)
T 3eqc_A           29 ELKDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLE-IKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEIS  107 (360)
T ss_dssp             CCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECC-CCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEE
T ss_pred             ccccccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccc-cCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEE
Confidence            455678899999999999999999885  566777877654 33445577899999999999999999999999999999


Q ss_pred             EEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcC-CCCcccCCCCCccceee
Q psy12580        176 VISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSL-ERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       176 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~-~~~ivHrdikp~Nill~  237 (239)
                      +||||+++|+|.+++....  .+++..+..++.|++.||.|||+. +  |+||||||+|||++
T Consensus       108 lv~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~~i~~~l~~lh~~~~--i~H~dlkp~Nil~~  166 (360)
T 3eqc_A          108 ICMEHMDGGSLDQVLKKAG--RIPEQILGKVSIAVIKGLTYLREKHK--IMHRDVKPSNILVN  166 (360)
T ss_dssp             EEECCCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHHHC--CCCSCCSGGGEEEC
T ss_pred             EEEECCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHhCC--EEcCCccHHHEEEC
Confidence            9999999999999998765  689999999999999999999995 8  99999999999986

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=99.94  E-value=2.9e-26  Score=181.08  Aligned_cols=137  Identities=23%  Similarity=0.385  Sum_probs=116.9

Q ss_pred             CCCCCCCcccccccCCCCCCceeeccC-CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEE
Q psy12580         98 GISLNDLSLHTKISSGPNGDTWRGRWQ-KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVV  176 (239)
Q Consensus        98 ~~~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~l  176 (239)
                      ....++|...+.||+|+||.||+|... +..+++|.+...... .....+.+|+.++..++||||+++++++..++..++
T Consensus        26 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~-~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~l  104 (326)
T 3uim_A           26 QVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQ-GGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLL  104 (326)
T ss_dssp             HTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC------CCCHHHHHHHGGGTCCCTTBCCCCEEECCSSCCEE
T ss_pred             HHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCc-hHHHHHHHHHHHHHhccCCCccceEEEEecCCceEE
Confidence            345578999999999999999999874 567888888654322 122358899999999999999999999999999999


Q ss_pred             EEeeCCCCCHHHHhhcCCC--cccCHHHHHHHHHHHHHHhhhhhcC---CCCcccCCCCCccceee
Q psy12580        177 ISQYMAWGSLYALLHEGAG--IVVDFAQALRFAVDVARGMAFLHSL---ERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       177 v~e~~~~gsL~~~l~~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~---~~~ivHrdikp~Nill~  237 (239)
                      ||||+++|+|.+++.....  ..+++..+..++.|++.||.|||+.   +  |+||||||+|||++
T Consensus       105 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~--ivH~Dlkp~Nil~~  168 (326)
T 3uim_A          105 VYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPK--IIHRDVKAANILLD  168 (326)
T ss_dssp             EEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSC--EECCCCSGGGEEEC
T ss_pred             EEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCC--eEeCCCchhhEEEC
Confidence            9999999999999987542  3489999999999999999999998   8  99999999999986

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=99.94  E-value=1.4e-26  Score=193.23  Aligned_cols=139  Identities=12%  Similarity=0.112  Sum_probs=120.0

Q ss_pred             cCCCCCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCC-chHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCc
Q psy12580         97 KGISLNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCT-PRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPD  173 (239)
Q Consensus        97 ~~~~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~  173 (239)
                      ..+..++|...+.||+|+||.||++..  .+..+++|++...... ......+..|..++..++||||+++++++.....
T Consensus       180 ~~~~~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~  259 (543)
T 3c4z_A          180 QPMGEDWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTD  259 (543)
T ss_dssp             SCCCGGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSE
T ss_pred             ccCChhheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCE
Confidence            345668889999999999999999987  3577888988654321 1234568889999999999999999999999999


Q ss_pred             eEEEEeeCCCCCHHHHhhcCC--CcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        174 LVVISQYMAWGSLYALLHEGA--GIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~~~--~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +++||||+++|+|.+++....  ...+++..++.++.||+.||.|||+.|  |+||||||+|||++
T Consensus       260 l~lVmE~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH~~g--IvHrDLKP~NILl~  323 (543)
T 3c4z_A          260 LCLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQRN--IIYRDLKPENVLLD  323 (543)
T ss_dssp             EEEEECCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEEC
T ss_pred             EEEEEEeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHcC--CcccCCChHHEEEe
Confidence            999999999999999997643  336999999999999999999999999  99999999999996

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=99.94  E-value=1.3e-26  Score=183.78  Aligned_cols=132  Identities=14%  Similarity=0.239  Sum_probs=115.5

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCc------hHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCc
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTP------RVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPD  173 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~------~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~  173 (239)
                      .+|.+.+.||+|+||.||+|..  .+..+++|++.......      .....+.+|+.+++.++||||+++++++...+.
T Consensus        24 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~~~  103 (335)
T 3dls_A           24 QKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQGF  103 (335)
T ss_dssp             HHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEECSSE
T ss_pred             cceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEeeCCE
Confidence            5688889999999999999975  56778889887653221      123457789999999999999999999999999


Q ss_pred             eEEEEeeCCCC-CHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        174 LVVISQYMAWG-SLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 ~~lv~e~~~~g-sL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .++||||+..| +|.+++....  .+++..+..++.|++.||.|||+.+  |+||||||+|||++
T Consensus       104 ~~lv~e~~~~g~~l~~~~~~~~--~l~~~~~~~i~~qi~~~L~~LH~~~--ivH~Dlkp~NIll~  164 (335)
T 3dls_A          104 FQLVMEKHGSGLDLFAFIDRHP--RLDEPLASYIFRQLVSAVGYLRLKD--IIHRDIKDENIVIA  164 (335)
T ss_dssp             EEEEEECCTTSCBHHHHHHTCC--CCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEEC
T ss_pred             EEEEEEeCCCCccHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCC--eEEeccCHHHEEEc
Confidence            99999999777 9999998876  6999999999999999999999999  99999999999986

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=99.94  E-value=2.7e-26  Score=181.60  Aligned_cols=129  Identities=13%  Similarity=0.158  Sum_probs=113.3

Q ss_pred             CCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhc-CCCceeeeeeeeeCCCceEEE
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIF-SHPNVLPVIGCVNSPPDLVVI  177 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~l~~~~~~~~~~~lv  177 (239)
                      ..+|.+.+.||+|+||.||+|..  .+..+++|++......    +.+.+|+.+++.+ +||||+++++++...+..++|
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~----~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv   83 (330)
T 2izr_A            8 GPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSRA----PQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMV   83 (330)
T ss_dssp             TTTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCSS----CCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEEE
T ss_pred             cCCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccch----HHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEEE
Confidence            46788999999999999999985  5677888987644322    3578899999999 899999999999999999999


Q ss_pred             EeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        178 SQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       178 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |||+ +++|.+++.... ..+++..++.++.|++.||+|||+.+  |+||||||+|||++
T Consensus        84 ~e~~-~~~L~~~~~~~~-~~~~~~~~~~i~~qi~~~l~~LH~~~--iiHrDlkp~Nill~  139 (330)
T 2izr_A           84 LELL-GPSLEDLFDLCD-RTFSLKTVLMIAIQLISRMEYVHSKN--LIYRDVKPENFLIG  139 (330)
T ss_dssp             EECC-CCBHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEEC
T ss_pred             EEeC-CCCHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHHHHhCC--eeccCCCHHHeeec
Confidence            9999 889999998753 26999999999999999999999999  99999999999996

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=99.94  E-value=2e-26  Score=196.53  Aligned_cols=125  Identities=19%  Similarity=0.361  Sum_probs=110.8

Q ss_pred             ccccCCCCCCceeeccC----CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEeeCCC
Q psy12580        108 TKISSGPNGDTWRGRWQ----KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAW  183 (239)
Q Consensus       108 ~~ig~g~~g~v~~~~~~----~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~~~  183 (239)
                      +.||+|+||.||+|.+.    +..+++|++..........+.+.+|+.+|..++||||+++++++.. +..++||||+++
T Consensus       375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~-~~~~lv~E~~~~  453 (635)
T 4fl3_A          375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA-ESWMLVMEMAEL  453 (635)
T ss_dssp             EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEES-SSEEEEEECCTT
T ss_pred             CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec-CCEEEEEEccCC
Confidence            37999999999999652    3567889887665555556789999999999999999999999965 458999999999


Q ss_pred             CCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        184 GSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       184 gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |+|.+++....  .+++..+..++.||+.||+|||+.+  ||||||||+|||++
T Consensus       454 g~L~~~l~~~~--~l~~~~~~~i~~qi~~~L~yLH~~~--iiHrDLkp~NILl~  503 (635)
T 4fl3_A          454 GPLNKYLQQNR--HVKDKNIIELVHQVSMGMKYLEESN--FVHRDLAARNVLLV  503 (635)
T ss_dssp             EEHHHHHHHCT--TCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSGGGEEEE
T ss_pred             CCHHHHHhhCC--CCCHHHHHHHHHHHHHHHHHHHHCC--EeCCCCChHhEEEe
Confidence            99999998765  6899999999999999999999999  99999999999996

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=99.94  E-value=2e-26  Score=178.74  Aligned_cols=133  Identities=14%  Similarity=0.242  Sum_probs=115.5

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEe
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQ  179 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e  179 (239)
                      +.|.+.+.||+|+||.||++..  .+..+++|.+..... ....+.+.+|+.+++.++||||+++++++......++|||
T Consensus        22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~-~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e  100 (285)
T 3is5_A           22 DLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRS-QVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVME  100 (285)
T ss_dssp             HHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGC-CSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred             hheeecceeccCCCeEEEEEEEccCCceEEEEEeecccc-chhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEEEEEE
Confidence            6688899999999999999986  356777788765432 2334678899999999999999999999999999999999


Q ss_pred             eCCCCCHHHHhhcC--CCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        180 YMAWGSLYALLHEG--AGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       180 ~~~~gsL~~~l~~~--~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |+++|+|.+++...  .+..+++..++.++.|++.||+|||+.+  |+||||||+|||++
T Consensus       101 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~--ivH~dikp~NIl~~  158 (285)
T 3is5_A          101 TCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFHSQH--VVHKDLKPENILFQ  158 (285)
T ss_dssp             CCSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCSGGGEEES
T ss_pred             eCCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHHhCC--EEECCCCHHHEEEe
Confidence            99999999998642  1236999999999999999999999999  99999999999983

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=99.94  E-value=2.2e-26  Score=181.49  Aligned_cols=127  Identities=18%  Similarity=0.262  Sum_probs=112.4

Q ss_pred             CcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEeeC
Q psy12580        104 LSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYM  181 (239)
Q Consensus       104 ~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~  181 (239)
                      +...+.||+|+||.||+|..  .+..+++|++.....  ...+.+.+|+.+++.++||||+++++++...+..++||||+
T Consensus        47 ~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  124 (321)
T 2c30_A           47 LDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQ--QRRELLFNEVVIMRDYQHFNVVEMYKSYLVGEELWVLMEFL  124 (321)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC--CSHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred             hhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccch--hHHHHHHHHHHHHHhCCCCCcceEEEEEEECCEEEEEEecC
Confidence            45566899999999999986  467788898865432  23466889999999999999999999999999999999999


Q ss_pred             CCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        182 AWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       182 ~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ++|+|.+++...   .+++..+..++.|++.||.|||+.+  |+||||||+|||++
T Consensus       125 ~~~~L~~~l~~~---~l~~~~~~~i~~qi~~~L~~LH~~~--ivH~Dlkp~NIll~  175 (321)
T 2c30_A          125 QGGALTDIVSQV---RLNEEQIATVCEAVLQALAYLHAQG--VIHRDIKSDSILLT  175 (321)
T ss_dssp             CSCBHHHHHTTC---CCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEEC
T ss_pred             CCCCHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCCHHHEEEC
Confidence            999999998764   4899999999999999999999999  99999999999997

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=99.94  E-value=2.3e-26  Score=184.81  Aligned_cols=126  Identities=16%  Similarity=0.336  Sum_probs=106.2

Q ss_pred             ccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEeeCCC
Q psy12580        106 LHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAW  183 (239)
Q Consensus       106 ~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~~~  183 (239)
                      ..+.||+|+||.||+|..  .+..+++|++....  ....+.+.+|+.++..++||||+++++++...+..++||||+++
T Consensus        93 ~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~~~~  170 (373)
T 2x4f_A           93 KTEILGGGRFGQVHKCEETATGLKLAAKIIKTRG--MKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDG  170 (373)
T ss_dssp             EEEECC-----CEEEEEETTTCCEEEEEEEECCS--HHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTT
T ss_pred             cceEEecCcCEEEEEEEEcCCCcEEEEEEEcccc--cccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCCC
Confidence            356799999999999986  45678888886532  23456789999999999999999999999999999999999999


Q ss_pred             CCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCcccee
Q psy12580        184 GSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV  236 (239)
Q Consensus       184 gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill  236 (239)
                      |+|.+++.... ..+++..+..++.|++.||.|||+.+  |+||||||+|||+
T Consensus       171 ~~L~~~l~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~~--ivH~Dlkp~NIll  220 (373)
T 2x4f_A          171 GELFDRIIDES-YNLTELDTILFMKQICEGIRHMHQMY--ILHLDLKPENILC  220 (373)
T ss_dssp             CEEHHHHHHTG-GGCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEE
T ss_pred             CcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCC--cccccCCHHHEEE
Confidence            99999997654 25899999999999999999999999  9999999999998

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=99.94  E-value=6.8e-27  Score=180.71  Aligned_cols=135  Identities=24%  Similarity=0.421  Sum_probs=117.3

Q ss_pred             cCCCCCCCcccccccCCCCCCceeeccCCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCC-CceE
Q psy12580         97 KGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSP-PDLV  175 (239)
Q Consensus        97 ~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~-~~~~  175 (239)
                      +.+..++|.+.+.||+|+||.||++.+.+..+++|.+....    ..+.+.+|+.+++.++||||+++++++... +..+
T Consensus        16 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~vavK~~~~~~----~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~   91 (278)
T 1byg_A           16 WALNMKELKLLQTIGKGEFGDVMLGDYRGNKVAVKCIKNDA----TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLY   91 (278)
T ss_dssp             CBCCGGGEEEEEEEEECSSCEEEEEEETTEEEEEEECCCCC------HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCE
T ss_pred             ccCChhhceEEeEEecCCCceEEEEEEcCCEEEEEEecchh----HHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceE
Confidence            34566889999999999999999999988889999886432    346788999999999999999999987554 4799


Q ss_pred             EEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        176 VISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       176 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +||||+++|+|.+++.......+++..+..++.|++.||.|||+.+  |+||||||+||+++
T Consensus        92 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~--i~H~dlkp~Nil~~  151 (278)
T 1byg_A           92 IVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNN--FVHRDLAARNVLVS  151 (278)
T ss_dssp             EEECCCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSGGGEEEC
T ss_pred             EEEecCCCCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHhCC--ccccCCCcceEEEe
Confidence            9999999999999998754334899999999999999999999999  99999999999986

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=99.94  E-value=1.9e-26  Score=188.07  Aligned_cols=131  Identities=15%  Similarity=0.267  Sum_probs=111.9

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCC------chHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCc
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCT------PRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPD  173 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~------~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~  173 (239)
                      ++|.+.+.||+|+||.||+|..  .+..+++|++......      ......+.+|+.++++++||||+++++++... .
T Consensus       135 ~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~-~  213 (419)
T 3i6u_A          135 DEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAE-D  213 (419)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEESS-E
T ss_pred             ccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEecC-c
Confidence            6688889999999999999986  3467888988654321      11223578999999999999999999998654 5


Q ss_pred             eEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        174 LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .++||||+++|+|.+++....  .+++..+..++.|++.||+|||+.+  |+||||||+|||++
T Consensus       214 ~~lv~e~~~~g~L~~~l~~~~--~~~~~~~~~i~~qi~~~l~~LH~~~--ivHrDlkp~NIll~  273 (419)
T 3i6u_A          214 YYIVLELMEGGELFDKVVGNK--RLKEATCKLYFYQMLLAVQYLHENG--IIHRDLKPENVLLS  273 (419)
T ss_dssp             EEEEEECCTTCBGGGGTSSSC--CCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEES
T ss_pred             eEEEEEcCCCCcHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHHCC--ccccCCChHhEEEe
Confidence            899999999999999998765  6999999999999999999999999  99999999999995

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=99.94  E-value=9.5e-27  Score=179.99  Aligned_cols=136  Identities=18%  Similarity=0.335  Sum_probs=117.7

Q ss_pred             CCCCCCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCC-chHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCce
Q psy12580         98 GISLNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCT-PRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDL  174 (239)
Q Consensus        98 ~~~~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~  174 (239)
                      ....++|.+.+.||+|+||.||+|...  +..+++|++...... ......+.+|+.+++.++||||+++++++...+..
T Consensus         5 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   84 (279)
T 3fdn_A            5 QWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRV   84 (279)
T ss_dssp             CCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEE
T ss_pred             eeecccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEE
Confidence            345578899999999999999999874  346778887543221 12245688999999999999999999999999999


Q ss_pred             EEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        175 VVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       175 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ++||||+++|+|.+++....  .+++..+..++.|++.||.|||+.|  |+||||||+|||++
T Consensus        85 ~lv~e~~~~~~l~~~l~~~~--~~~~~~~~~~~~qi~~~l~~LH~~~--i~H~dlkp~Nili~  143 (279)
T 3fdn_A           85 YLILEYAPLGTVYRELQKLS--KFDEQRTATYITELANALSYCHSKR--VIHRDIKPENLLLG  143 (279)
T ss_dssp             EEEECCCTTEEHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHTTT--CEECCCCGGGEEEC
T ss_pred             EEEEecCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCC--EecccCChHhEEEc
Confidence            99999999999999998765  6899999999999999999999999  99999999999985

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=99.93  E-value=2.7e-26  Score=177.73  Aligned_cols=132  Identities=21%  Similarity=0.396  Sum_probs=116.5

Q ss_pred             CCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCc----hHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceE
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTP----RVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLV  175 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~----~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~  175 (239)
                      +.|.+.+.||+|+||.||++...  +..+++|++.......    ...+.+.+|+.+++.++||||+++++++...+..+
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~   84 (283)
T 3bhy_A            5 DHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDVV   84 (283)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             hhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCeEE
Confidence            45778899999999999999874  5778888886653321    13567889999999999999999999999999999


Q ss_pred             EEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        176 VISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       176 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +||||+++++|.+++....  .+++..+..++.|++.||.|||+.+  |+||||||+||+++
T Consensus        85 lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~i~~~l~~lH~~~--i~H~dl~p~Nil~~  142 (283)
T 3bhy_A           85 LILELVSGGELFDFLAEKE--SLTEDEATQFLKQILDGVHYLHSKR--IAHFDLKPENIMLL  142 (283)
T ss_dssp             EEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEES
T ss_pred             EEEeecCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCC--ccCCCCChHHEEEe
Confidence            9999999999999998755  6899999999999999999999999  99999999999985

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=99.93  E-value=6e-27  Score=187.15  Aligned_cols=136  Identities=14%  Similarity=0.229  Sum_probs=117.1

Q ss_pred             CCCCCCCcccccccCCCCCCceeecc-----CCCceeeeeeeeccC--CchHHHHHHHHHhHhhhc-CCCceeeeeeeee
Q psy12580         98 GISLNDLSLHTKISSGPNGDTWRGRW-----QKNDIVAKILAVRNC--TPRVSRDFNEEFPKLRIF-SHPNVLPVIGCVN  169 (239)
Q Consensus        98 ~~~~~~~~~~~~ig~g~~g~v~~~~~-----~~~~~~vk~~~~~~~--~~~~~~~~~~e~~~l~~l-~h~~iv~l~~~~~  169 (239)
                      .+...+|.+.+.||+|+||.||++..     .+..+++|++.....  .......+.+|+.++..+ .||||+++++++.
T Consensus        50 ~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~  129 (355)
T 1vzo_A           50 KVGIENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQ  129 (355)
T ss_dssp             CCCGGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEE
T ss_pred             cccccceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEe
Confidence            34557899999999999999999976     457788898865321  112234567899999999 6999999999999


Q ss_pred             CCCceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        170 SPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       170 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ..+..++||||+++|+|.+++....  .+++..+..++.|++.||.|||+.+  |+||||||+|||++
T Consensus       130 ~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~~--ivH~Dlkp~NIll~  193 (355)
T 1vzo_A          130 TETKLHLILDYINGGELFTHLSQRE--RFTEHEVQIYVGEIVLALEHLHKLG--IIYRDIKLENILLD  193 (355)
T ss_dssp             ETTEEEEEECCCCSCBHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCGGGEEEC
T ss_pred             eCceEEEEeecCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCCHHHEEEC
Confidence            9999999999999999999998765  6899999999999999999999999  99999999999996

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=99.93  E-value=4.6e-26  Score=184.16  Aligned_cols=130  Identities=15%  Similarity=0.254  Sum_probs=105.6

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcC-CCceeeeeeeeeCCC--ceEE
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFS-HPNVLPVIGCVNSPP--DLVV  176 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~-h~~iv~l~~~~~~~~--~~~l  176 (239)
                      .+|.+.+.||+|+||.||+|..  .+..+++|++............+.+|+.++..+. ||||+++++++...+  .+++
T Consensus         9 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~~~l   88 (388)
T 3oz6_A            9 RKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRDVYL   88 (388)
T ss_dssp             TTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSCEEE
T ss_pred             CceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCEEEE
Confidence            5688899999999999999976  4677888988655444555677889999999996 999999999997544  7899


Q ss_pred             EEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        177 ISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       177 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||||++ |+|.++++..   .+++..+..++.|++.||+|||+.|  |+||||||+|||++
T Consensus        89 v~e~~~-~~L~~~~~~~---~~~~~~~~~i~~qi~~~L~~LH~~~--ivHrDlkp~NIll~  143 (388)
T 3oz6_A           89 VFDYME-TDLHAVIRAN---ILEPVHKQYVVYQLIKVIKYLHSGG--LLHRDMKPSNILLN  143 (388)
T ss_dssp             EEECCS-EEHHHHHHHT---CCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEEC
T ss_pred             EecccC-cCHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHhCC--EEeCCCCHHHeEEc
Confidence            999997 5999999874   4899999999999999999999999  99999999999996

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=99.93  E-value=4.2e-26  Score=179.63  Aligned_cols=130  Identities=24%  Similarity=0.401  Sum_probs=112.9

Q ss_pred             CCCcccccccCCCCCCceeecc------CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCC--Cc
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW------QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSP--PD  173 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~------~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~--~~  173 (239)
                      ..|.+.+.||+|+||.||++.+      .+..+++|++... ......+.+.+|+.+++.++||||+++++++...  ..
T Consensus        31 r~~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~  109 (318)
T 3lxp_A           31 RYLKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKAD-AGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAAS  109 (318)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTT-CCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTE
T ss_pred             HHHhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccc-cChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCce
Confidence            4458899999999999988764      3456788888644 3344557789999999999999999999999764  57


Q ss_pred             eEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        174 LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +++||||+++|+|.+++....   +++..++.++.|++.||.|||+.+  |+||||||+|||++
T Consensus       110 ~~lv~e~~~~~~L~~~l~~~~---~~~~~~~~i~~~l~~~l~~LH~~~--ivH~Dikp~Nil~~  168 (318)
T 3lxp_A          110 LQLVMEYVPLGSLRDYLPRHS---IGLAQLLLFAQQICEGMAYLHAQH--YIHRDLAARNVLLD  168 (318)
T ss_dssp             EEEEECCCTTCBHHHHGGGSC---CCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEEC
T ss_pred             EEEEEecccCCcHHHHHhhCC---CCHHHHHHHHHHHHHHHHHHHhCC--ccCCCCchheEEEc
Confidence            899999999999999998764   899999999999999999999999  99999999999986

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=99.93  E-value=3.4e-26  Score=180.85  Aligned_cols=140  Identities=26%  Similarity=0.397  Sum_probs=116.4

Q ss_pred             cccCCCCCCCcccccccCCCCCCceeeccCC--Cc--eeeeeeeeccCCchHHHHHHHHHhHhhhc-CCCceeeeeeeee
Q psy12580         95 RHKGISLNDLSLHTKISSGPNGDTWRGRWQK--ND--IVAKILAVRNCTPRVSRDFNEEFPKLRIF-SHPNVLPVIGCVN  169 (239)
Q Consensus        95 ~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~--~~--~~vk~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~l~~~~~  169 (239)
                      ..+.+..++|.+.+.||+|+||.||+|....  ..  +++|.+... ......+.+.+|+.++..+ +||||+++++++.
T Consensus        18 ~~p~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~-~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~   96 (327)
T 1fvr_A           18 IYPVLDWNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEY-ASKDDHRDFAGELEVLCKLGHHPNIINLLGACE   96 (327)
T ss_dssp             CSSBCCGGGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC-------CHHHHHHHHHTTCCCCTTBCCEEEEEE
T ss_pred             ccccccHHHccceeeeecCCCceEEEEEEccCCcccceeeeeeccc-cchHHHHHHHHHHHHHHhccCCCchhhhceeee
Confidence            3455667889999999999999999998743  33  366666532 2233446788999999999 8999999999999


Q ss_pred             CCCceEEEEeeCCCCCHHHHhhcCC--------------CcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccce
Q psy12580        170 SPPDLVVISQYMAWGSLYALLHEGA--------------GIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVM  235 (239)
Q Consensus       170 ~~~~~~lv~e~~~~gsL~~~l~~~~--------------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nil  235 (239)
                      ..+..++||||+++|+|.+++....              ...+++..++.++.|++.||.|||+.+  |+||||||+|||
T Consensus        97 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~--ivH~dlkp~NIl  174 (327)
T 1fvr_A           97 HRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQ--FIHRDLAARNIL  174 (327)
T ss_dssp             ETTEEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEE
T ss_pred             eCCceEEEEecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCC--ccCCCCccceEE
Confidence            9999999999999999999998643              235899999999999999999999999  999999999999


Q ss_pred             ee
Q psy12580        236 VY  237 (239)
Q Consensus       236 l~  237 (239)
                      ++
T Consensus       175 ~~  176 (327)
T 1fvr_A          175 VG  176 (327)
T ss_dssp             EC
T ss_pred             Ec
Confidence            86

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...

Probab=99.93  E-value=2.7e-26  Score=179.11  Aligned_cols=134  Identities=16%  Similarity=0.330  Sum_probs=113.4

Q ss_pred             CCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEE
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVIS  178 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~  178 (239)
                      .++|...+.||+|+||.||+|..  .+..+++|.+............+.+|+.+++.++||||+++++++...+..++||
T Consensus         2 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   81 (299)
T 2r3i_A            2 MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVF   81 (299)
T ss_dssp             CTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC--------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             cchhhhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCccchhhHHHHHHHHHHHHHcCCCCeeeEEEEEecCCceEEEE
Confidence            35788899999999999999987  4577888888655433333467889999999999999999999999999999999


Q ss_pred             eeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        179 QYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       179 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||++ |+|.+++.......+++..+..++.|++.||.|||+.|  |+||||||+||+++
T Consensus        82 e~~~-~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~--i~H~dlkp~Nili~  137 (299)
T 2r3i_A           82 EFLH-QDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHR--VLHRDLKPQNLLIN  137 (299)
T ss_dssp             ECCS-EEHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCGGGEEEC
T ss_pred             Eccc-CCHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHCC--ccCCCCCHHHeEEc
Confidence            9997 59999998765446899999999999999999999999  99999999999986

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=99.93  E-value=2.4e-26  Score=182.66  Aligned_cols=125  Identities=15%  Similarity=0.250  Sum_probs=110.5

Q ss_pred             CCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhc-CCCceeeeeeeeeCCCceEEEE
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIF-SHPNVLPVIGCVNSPPDLVVIS  178 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~l~~~~~~~~~~~lv~  178 (239)
                      ++|.+.+.||+|+||.||+|...  +..+++|++......      ..+|+.++.++ +||||+++++++...+..++||
T Consensus        22 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~------~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~   95 (342)
T 2qr7_A           22 DGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKRD------PTEEIEILLRYGQHPNIITLKDVYDDGKYVYVVT   95 (342)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTCC------CHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEE
T ss_pred             ccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccCC------hHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEEEE
Confidence            56788899999999999999874  567888988654322      34677788877 7999999999999999999999


Q ss_pred             eeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCcccee
Q psy12580        179 QYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV  236 (239)
Q Consensus       179 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill  236 (239)
                      ||+++|+|.+++....  .+++..+..++.||+.||+|||+.|  |+||||||+|||+
T Consensus        96 E~~~gg~L~~~i~~~~--~~~~~~~~~~~~qi~~al~~lH~~g--ivHrDlkp~NIl~  149 (342)
T 2qr7_A           96 ELMKGGELLDKILRQK--FFSEREASAVLFTITKTVEYLHAQG--VVHRDLKPSNILY  149 (342)
T ss_dssp             CCCCSCBHHHHHHTCT--TCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCCGGGEEE
T ss_pred             eCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCC--cEeccCCHHHEEE
Confidence            9999999999998766  6999999999999999999999999  9999999999997

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=99.93  E-value=3.3e-26  Score=183.14  Aligned_cols=131  Identities=13%  Similarity=0.212  Sum_probs=115.4

Q ss_pred             CCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcC-----CCceeeeeeeeeCCCc
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFS-----HPNVLPVIGCVNSPPD  173 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~-----h~~iv~l~~~~~~~~~  173 (239)
                      ...|.+.+.||+|+||.||+|..  .+..+++|++..   .......+..|..+++.+.     ||||+++++++...+.
T Consensus        34 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~---~~~~~~~~~~e~~~l~~l~~~~~~h~~iv~~~~~~~~~~~  110 (360)
T 3llt_A           34 NNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRN---IKKYTRSAKIEADILKKIQNDDINNNNIVKYHGKFMYYDH  110 (360)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECS---CHHHHHHHHHHHHHHHHTCCCSTTGGGBCCEEEEEEETTE
T ss_pred             cCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEecc---chhhhhhhHHHHHHHHHhcccCCCCCCeecccceeeECCe
Confidence            46789999999999999999987  456788888753   2334456778999999886     9999999999999999


Q ss_pred             eEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        174 LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .++||||+ +++|.+++.......+++..+..++.||+.||+|||+.+  |+||||||+|||++
T Consensus       111 ~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~--ivHrDlkp~NIll~  171 (360)
T 3llt_A          111 MCLIFEPL-GPSLYEIITRNNYNGFHIEDIKLYCIEILKALNYLRKMS--LTHTDLKPENILLD  171 (360)
T ss_dssp             EEEEECCC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEES
T ss_pred             eEEEEcCC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCC--eeeCCCCcccEEEc
Confidence            99999999 889999999866556999999999999999999999999  99999999999995

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=99.93  E-value=6e-26  Score=179.92  Aligned_cols=139  Identities=22%  Similarity=0.328  Sum_probs=118.7

Q ss_pred             ccCCCCCCCcccccccCCCCCCceeeccC---------CCceeeeeeeeccCCchHHHHHHHHHhHhhhc-CCCceeeee
Q psy12580         96 HKGISLNDLSLHTKISSGPNGDTWRGRWQ---------KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIF-SHPNVLPVI  165 (239)
Q Consensus        96 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~~---------~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~l~  165 (239)
                      .+.+..++|.+.+.||+|+||.||+|.+.         +..+++|++... ........+.+|+.+++.+ +||||++++
T Consensus        29 ~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~E~~~l~~l~~hp~iv~~~  107 (334)
T 2pvf_A           29 KWEFPRDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDD-ATEKDLSDLVSEMEMMKMIGKHKNIINLL  107 (334)
T ss_dssp             TTBCCGGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTT-CCHHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             cccCCHhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccC-CcHHHHHHHHHHHHHHHHhhcCCCEeeEE
Confidence            34566788999999999999999999763         245777877543 2344557788999999999 899999999


Q ss_pred             eeeeCCCceEEEEeeCCCCCHHHHhhcCCC--------------cccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCC
Q psy12580        166 GCVNSPPDLVVISQYMAWGSLYALLHEGAG--------------IVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNS  231 (239)
Q Consensus       166 ~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~--------------~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp  231 (239)
                      +++...+..++||||+++|+|.+++.....              ..+++..++.++.|++.||.|||+.+  |+||||||
T Consensus       108 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~--ivH~Dlkp  185 (334)
T 2pvf_A          108 GACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQK--CIHRDLAA  185 (334)
T ss_dssp             EEECSSSCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSG
T ss_pred             EEEccCCceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCC--eeCCCCcc
Confidence            999999999999999999999999986531              24899999999999999999999999  99999999


Q ss_pred             ccceee
Q psy12580        232 RHVMVY  237 (239)
Q Consensus       232 ~Nill~  237 (239)
                      +|||++
T Consensus       186 ~NIll~  191 (334)
T 2pvf_A          186 RNVLVT  191 (334)
T ss_dssp             GGEEEC
T ss_pred             ceEEEc
Confidence            999986

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=99.93  E-value=3.6e-26  Score=181.06  Aligned_cols=140  Identities=20%  Similarity=0.340  Sum_probs=119.3

Q ss_pred             cccCCCCCCCcccccccCCCCCCceeeccCC-------CceeeeeeeeccCCchHHHHHHHHHhHhhhc-CCCceeeeee
Q psy12580         95 RHKGISLNDLSLHTKISSGPNGDTWRGRWQK-------NDIVAKILAVRNCTPRVSRDFNEEFPKLRIF-SHPNVLPVIG  166 (239)
Q Consensus        95 ~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~-------~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~l~~  166 (239)
                      ....+..++|.+.+.||+|+||.||+|...+       ..+++|.+... ......+.+.+|+.++..+ +||||+++++
T Consensus        39 ~~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~  117 (333)
T 2i1m_A           39 EKWEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKST-AHADEKEALMSELKIMSHLGQHENIVNLLG  117 (333)
T ss_dssp             GGGBCCTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTT-CCHHHHHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred             ccccCCHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccc-cChHHHHHHHHHHHHHHhhcCCCCeeeEEE
Confidence            3456777899999999999999999998632       24666776543 2334557789999999999 8999999999


Q ss_pred             eeeCCCceEEEEeeCCCCCHHHHhhcCC------------CcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccc
Q psy12580        167 CVNSPPDLVVISQYMAWGSLYALLHEGA------------GIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHV  234 (239)
Q Consensus       167 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~------------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Ni  234 (239)
                      ++...+..++||||+++|+|.+++....            ...+++..++.++.|++.||.|||+.+  |+||||||+||
T Consensus       118 ~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~--ivH~Dlkp~NI  195 (333)
T 2i1m_A          118 ACTHGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASKN--CIHRDVAARNV  195 (333)
T ss_dssp             EECSSSSCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGC
T ss_pred             EEecCCceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhcCC--cccCCcccceE
Confidence            9999999999999999999999997532            125799999999999999999999999  99999999999


Q ss_pred             eee
Q psy12580        235 MVY  237 (239)
Q Consensus       235 ll~  237 (239)
                      |++
T Consensus       196 l~~  198 (333)
T 2i1m_A          196 LLT  198 (333)
T ss_dssp             EEE
T ss_pred             EEC
Confidence            986

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=99.93  E-value=2.7e-26  Score=180.25  Aligned_cols=132  Identities=14%  Similarity=0.097  Sum_probs=112.5

Q ss_pred             CCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhc-CCCceeeeeeeeeCCCceEEEE
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIF-SHPNVLPVIGCVNSPPDLVVIS  178 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~l~~~~~~~~~~~lv~  178 (239)
                      +.|+..+.||+|+||.||+|...  +..+++|++...............|...+..+ .||||+++++++...+..++||
T Consensus        57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~lv~  136 (311)
T 3p1a_A           57 QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQT  136 (311)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             hheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEEEE
Confidence            56888899999999999999874  56788888765544444445566666666665 8999999999999999999999


Q ss_pred             eeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        179 QYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       179 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||+ +++|.+++.... ..+++..++.++.|++.||+|||+.+  |+||||||+|||++
T Consensus       137 e~~-~~~L~~~~~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~~--ivH~Dikp~NIll~  191 (311)
T 3p1a_A          137 ELC-GPSLQQHCEAWG-ASLPEAQVWGYLRDTLLALAHLHSQG--LVHLDVKPANIFLG  191 (311)
T ss_dssp             ECC-CCBHHHHHHHHC-SCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEEC
T ss_pred             ecc-CCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCC--EecCCCCHHHEEEC
Confidence            999 669999988754 25999999999999999999999999  99999999999996

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=99.93  E-value=4.9e-26  Score=182.57  Aligned_cols=131  Identities=15%  Similarity=0.177  Sum_probs=108.7

Q ss_pred             CCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCC------
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP------  172 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~------  172 (239)
                      ...|...+.||+|+||.||+|..  .+..+++|.+..........+.+.+|+.+++.++||||+++++++....      
T Consensus        24 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~  103 (367)
T 1cm8_A           24 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT  103 (367)
T ss_dssp             BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred             cceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccCc
Confidence            36788999999999999999986  4677888888655444555677899999999999999999999997653      


Q ss_pred             ceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        173 DLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       173 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .+++||||+ +++|.++++..   .+++..+..++.|++.||+|||+.|  |+||||||+|||++
T Consensus       104 ~~~lv~e~~-~~~L~~~~~~~---~l~~~~~~~~~~qi~~~L~~LH~~~--ivH~Dlkp~NIll~  162 (367)
T 1cm8_A          104 DFYLVMPFM-GTDLGKLMKHE---KLGEDRIQFLVYQMLKGLRYIHAAG--IIHRDLKPGNLAVN  162 (367)
T ss_dssp             CCEEEEECC-SEEHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEEC
T ss_pred             eEEEEEecC-CCCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHCC--ccccCcCHHHEEEc
Confidence            469999999 77999999874   4899999999999999999999999  99999999999986

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=99.93  E-value=2e-26  Score=178.02  Aligned_cols=135  Identities=14%  Similarity=0.247  Sum_probs=117.6

Q ss_pred             CCCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCC-chHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEE
Q psy12580        100 SLNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCT-PRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVV  176 (239)
Q Consensus       100 ~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~l  176 (239)
                      ..++|.+.+.||+|+||.||+|..  .+..+++|++...... ....+.+.+|+.+++.++||||+++++++...+..++
T Consensus         9 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   88 (278)
T 3cok_A            9 KIEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYL   88 (278)
T ss_dssp             SGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEE
T ss_pred             ccccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEE
Confidence            346788999999999999999986  5677888988654211 1224678899999999999999999999999999999


Q ss_pred             EEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        177 ISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       177 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||||+++++|.+++.... ..+++..++.++.|+++||.|||+.+  |+||||||+|||++
T Consensus        89 v~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~--i~H~dl~p~Nili~  146 (278)
T 3cok_A           89 VLEMCHNGEMNRYLKNRV-KPFSENEARHFMHQIITGMLYLHSHG--ILHRDLTLSNLLLT  146 (278)
T ss_dssp             EEECCTTEEHHHHHHTCS-SCCCHHHHHHHHHHHHHHHHHHHHTT--EECSSCCGGGEEEC
T ss_pred             EEecCCCCcHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCCHHHEEEc
Confidence            999999999999998754 26899999999999999999999999  99999999999986

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=99.93  E-value=1.8e-26  Score=183.61  Aligned_cols=134  Identities=13%  Similarity=0.169  Sum_probs=113.2

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeecc---CCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEE
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRN---CTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVV  176 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~---~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~l  176 (239)
                      ..|.+.+.||+|+||.||+|..  .+..+++|++....   ......+.+.+|+.+++.++||||+++++++...+..++
T Consensus        26 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~l  105 (345)
T 3hko_A           26 KKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDEQYICL  105 (345)
T ss_dssp             HHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred             hheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhccCCeEEE
Confidence            5678899999999999999987  34567788886542   234455788999999999999999999999999999999


Q ss_pred             EEeeCCCCCHHHHhhcC--------------------------------------CCcccCHHHHHHHHHHHHHHhhhhh
Q psy12580        177 ISQYMAWGSLYALLHEG--------------------------------------AGIVVDFAQALRFAVDVARGMAFLH  218 (239)
Q Consensus       177 v~e~~~~gsL~~~l~~~--------------------------------------~~~~~~~~~~~~~~~~i~~~l~~lH  218 (239)
                      ||||+++|+|.+++...                                      ....+++..++.++.|++.||+|||
T Consensus       106 v~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH  185 (345)
T 3hko_A          106 VMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSALHYLH  185 (345)
T ss_dssp             EEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999521                                      0123568889999999999999999


Q ss_pred             cCCCCcccCCCCCccceee
Q psy12580        219 SLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       219 ~~~~~ivHrdikp~Nill~  237 (239)
                      +.+  |+||||||+|||++
T Consensus       186 ~~~--ivH~Dlkp~NIll~  202 (345)
T 3hko_A          186 NQG--ICHRDIKPENFLFS  202 (345)
T ss_dssp             HTT--EECCCCCGGGEEES
T ss_pred             HCC--ccccCCChhhEEEe
Confidence            999  99999999999995

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=99.93  E-value=6.1e-26  Score=192.94  Aligned_cols=133  Identities=17%  Similarity=0.317  Sum_probs=112.2

Q ss_pred             CCCCCcccc-cccCCCCCCceeeccC----CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCce
Q psy12580        100 SLNDLSLHT-KISSGPNGDTWRGRWQ----KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDL  174 (239)
Q Consensus       100 ~~~~~~~~~-~ig~g~~g~v~~~~~~----~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~  174 (239)
                      ...++.+.+ .||+|+||.||+|.+.    +..+++|++.... .....+.+.+|+.+|+.++||||+++++++.. +..
T Consensus       333 ~~~~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~-~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~-~~~  410 (613)
T 2ozo_A          333 KRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGT-EKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EAL  410 (613)
T ss_dssp             CTTSEEEEEEEEEECSSSEEEEEEEECSSCEEEEEEEECCCCC-SSTTHHHHHHHHHHHTTCCCTTBCCEEEEEES-SSE
T ss_pred             cccceeEcCcEEecCCCcEEEEEEEecCCCcEEEEEEEcCCCC-ChHHHHHHHHHHHHHHhCCCCCEeeEEEEecc-CCe
Confidence            334445555 7999999999999773    2357778886542 23345779999999999999999999999976 569


Q ss_pred             EEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        175 VVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       175 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ++||||+++|+|.+++.... ..+++..+..++.||+.||+|||+.+  ||||||||+|||++
T Consensus       411 ~lv~E~~~~g~L~~~l~~~~-~~l~~~~~~~i~~qi~~~L~~LH~~~--iiHrDlkp~NILl~  470 (613)
T 2ozo_A          411 MLVMEMAGGGPLHKFLVGKR-EEIPVSNVAELLHQVSMGMKYLEEKN--FVHRNLAARNVLLV  470 (613)
T ss_dssp             EEEEECCTTCBHHHHHTTCT-TTSCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSGGGEEEE
T ss_pred             EEEEEeCCCCcHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHHHHHCC--EEcCcCCHHHEEEc
Confidence            99999999999999997654 35999999999999999999999999  99999999999996

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=99.93  E-value=3.6e-26  Score=177.44  Aligned_cols=133  Identities=13%  Similarity=0.296  Sum_probs=119.1

Q ss_pred             CCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEE
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVIS  178 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~  178 (239)
                      ...|.+.+.||+|+||.||+|..  .+..+++|++............+.+|+.+++.++||||+++++++...+..++||
T Consensus        21 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~  100 (287)
T 2wei_A           21 AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVG  100 (287)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeEEEEE
Confidence            36788899999999999999987  4677888988765544445577889999999999999999999999999999999


Q ss_pred             eeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        179 QYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       179 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||+++++|.+++....  .+++..++.++.|++.||.|||+.+  |+||||||+||+++
T Consensus       101 e~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~~l~~LH~~~--i~H~dl~p~NIlv~  155 (287)
T 2wei_A          101 ELYTGGELFDEIIKRK--RFSEHDAARIIKQVFSGITYMHKHN--IVHRDLKPENILLE  155 (287)
T ss_dssp             CCCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEES
T ss_pred             EccCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCC--eeccCCChhhEEEe
Confidence            9999999999987755  6899999999999999999999999  99999999999995

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=99.93  E-value=4.8e-26  Score=177.31  Aligned_cols=134  Identities=15%  Similarity=0.154  Sum_probs=117.8

Q ss_pred             CCCCCcccccccCCCCCCceeeccC--CCceeeeeeeeccC-CchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEE
Q psy12580        100 SLNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNC-TPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVV  176 (239)
Q Consensus       100 ~~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~l  176 (239)
                      ....|.+.+.||+|+||.||++...  +..+++|++..... .....+.+.+|+.+++.++||||+++++++...+..++
T Consensus        13 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~l   92 (294)
T 2rku_A           13 SRRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFV   92 (294)
T ss_dssp             TTEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEE
T ss_pred             cccceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEE
Confidence            3467889999999999999999874  45667788765533 23445678899999999999999999999999999999


Q ss_pred             EEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        177 ISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       177 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||||+++++|.+++....  .+++..+..++.|++.||.|||+.+  |+||||||+|||++
T Consensus        93 v~e~~~~~~L~~~~~~~~--~~~~~~~~~i~~qi~~~l~~lH~~~--i~H~dl~p~Nil~~  149 (294)
T 2rku_A           93 VLELCRRRSLLELHKRRK--ALTEPEARYYLRQIVLGCQYLHRNR--VIHRDLKLGNLFLN  149 (294)
T ss_dssp             EEECCTTCBHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEEC
T ss_pred             EEecCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCC--ccccCCChHhEEEc
Confidence            999999999999998765  6899999999999999999999999  99999999999986

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=99.93  E-value=4.1e-26  Score=180.95  Aligned_cols=134  Identities=15%  Similarity=0.154  Sum_probs=117.9

Q ss_pred             CCCCCcccccccCCCCCCceeeccC--CCceeeeeeeeccC-CchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEE
Q psy12580        100 SLNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNC-TPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVV  176 (239)
Q Consensus       100 ~~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~l  176 (239)
                      ....|.+.+.||+|+||.||++...  +..+++|++..... .....+.+.+|+.+++.++||||+++++++...+..++
T Consensus        39 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l  118 (335)
T 2owb_A           39 SRRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFV  118 (335)
T ss_dssp             TTEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEE
T ss_pred             cCCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEE
Confidence            3467889999999999999999874  45667788765433 33445678899999999999999999999999999999


Q ss_pred             EEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        177 ISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       177 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||||+++++|.+++....  .+++..++.++.|++.||.|||+.+  |+||||||+|||++
T Consensus       119 v~e~~~~~~L~~~~~~~~--~l~~~~~~~i~~qi~~aL~~LH~~~--ivH~dlkp~NIl~~  175 (335)
T 2owb_A          119 VLELCRRRSLLELHKRRK--ALTEPEARYYLRQIVLGCQYLHRNR--VIHRDLKLGNLFLN  175 (335)
T ss_dssp             EECCCTTCBHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCCGGGEEEC
T ss_pred             EEecCCCCCHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHHCC--CEecCCCchhEEEc
Confidence            999999999999998755  6899999999999999999999999  99999999999986

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=99.93  E-value=4.3e-26  Score=183.19  Aligned_cols=131  Identities=24%  Similarity=0.325  Sum_probs=110.2

Q ss_pred             CCcccccccCCCCCCceeeccCC-----CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeC-CCceEE
Q psy12580        103 DLSLHTKISSGPNGDTWRGRWQK-----NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNS-PPDLVV  176 (239)
Q Consensus       103 ~~~~~~~ig~g~~g~v~~~~~~~-----~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~-~~~~~l  176 (239)
                      .|.+.+.||+|+||.||+|.+.+     ..+++|.+.. .......+.+.+|+.+++.++||||+++++++.. .+..++
T Consensus        90 ~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~-~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~l  168 (373)
T 3c1x_A           90 IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNR-ITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLV  168 (373)
T ss_dssp             EEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCS-CSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCEE
T ss_pred             eeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCC-CCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeEE
Confidence            45677899999999999998632     1355566643 2334456789999999999999999999998754 457899


Q ss_pred             EEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        177 ISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       177 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||||+++|+|.++++... ..+++..+..++.|+++||.|||+.+  |+||||||+|||++
T Consensus       169 v~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH~~~--ivHrDlkp~NIll~  226 (373)
T 3c1x_A          169 VLPYMKHGDLRNFIRNET-HNPTVKDLIGFGLQVAKGMKFLASKK--FVHRDLAARNCMLD  226 (373)
T ss_dssp             EEECCTTCBHHHHHHCTT-CCCBHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEEC
T ss_pred             EEECCCCCCHHHHHhhcc-cCCCHHHHHHHHHHHHHHHHHHHHCC--EecCccchheEEEC
Confidence            999999999999998654 25889999999999999999999999  99999999999996

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=99.93  E-value=4e-26  Score=179.05  Aligned_cols=135  Identities=13%  Similarity=0.199  Sum_probs=117.7

Q ss_pred             CCCCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccC-CchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceE
Q psy12580         99 ISLNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNC-TPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLV  175 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~  175 (239)
                      ....+|.+.+.||+|+||.||++..  .+..+++|++..... .....+.+.+|+.++..++||||+++++++...+..+
T Consensus        31 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~  110 (309)
T 2h34_A           31 TQFGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLY  110 (309)
T ss_dssp             ---CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEE
T ss_pred             cEeccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEE
Confidence            4457899999999999999999986  456778888865432 2334477889999999999999999999999999999


Q ss_pred             EEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        176 VISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       176 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +||||+++++|.+++....  .+++..+..++.|++.||.|||+.+  |+||||||+|||++
T Consensus       111 lv~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~~l~~lH~~~--i~H~dlkp~NIl~~  168 (309)
T 2h34_A          111 VDMRLINGVDLAAMLRRQG--PLAPPRAVAIVRQIGSALDAAHAAG--ATHRDVKPENILVS  168 (309)
T ss_dssp             EEEECCCCEEHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEEC
T ss_pred             EEEEecCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCc--CCcCCCChHHEEEc
Confidence            9999999999999998765  6899999999999999999999999  99999999999986

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=99.93  E-value=4.9e-26  Score=177.86  Aligned_cols=138  Identities=16%  Similarity=0.276  Sum_probs=104.1

Q ss_pred             cCCCCCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCce
Q psy12580         97 KGISLNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDL  174 (239)
Q Consensus        97 ~~~~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~  174 (239)
                      ..+...+|.+.+.||+|+||.||+|..  .+..+++|.+..... ....+.+.+|+.++..++||||+++++++...+..
T Consensus        10 ~~i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   88 (303)
T 2vwi_A           10 WSINRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKC-QTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDEL   88 (303)
T ss_dssp             ---CCCCCEEEEECC---CCCEEEEEC----CEEEEECCC-----------------CCCCCCCTTBCCEEEEEESSSCE
T ss_pred             cccchhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhc-chhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCc
Confidence            456678899999999999999999987  457788888755432 22346688999999999999999999999999999


Q ss_pred             EEEEeeCCCCCHHHHhhc------CCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        175 VVISQYMAWGSLYALLHE------GAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       175 ~lv~e~~~~gsL~~~l~~------~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ++||||+++|+|.+++..      .....+++..+..++.|++.||.|||+.+  |+||||||+|||++
T Consensus        89 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~--i~H~dl~p~Nil~~  155 (303)
T 2vwi_A           89 WLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKNG--QIHRDVKAGNILLG  155 (303)
T ss_dssp             EEEEECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCSGGGEEEC
T ss_pred             EEEehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHhCC--CCCCCCChhhEEEc
Confidence            999999999999999974      11235899999999999999999999999  99999999999986

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=99.93  E-value=7.3e-26  Score=175.19  Aligned_cols=136  Identities=19%  Similarity=0.402  Sum_probs=115.5

Q ss_pred             cCCCCCCCcccccccCCCCCCceeeccCCC-----ceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCC
Q psy12580         97 KGISLNDLSLHTKISSGPNGDTWRGRWQKN-----DIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSP  171 (239)
Q Consensus        97 ~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~-----~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~  171 (239)
                      ..+..++|.+.+.||+|+||.||+|.+.+.     .+++|.+... ......+.+.+|+.+++.++||||+++++++..+
T Consensus         7 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~   85 (281)
T 3cc6_A            7 YGIAREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKD-CTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEEE   85 (281)
T ss_dssp             CSCCGGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTT-SCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECSS
T ss_pred             ceecccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccc-cCchHHHHHHHHHHHHHhCCCCCcceEEEEEcCC
Confidence            345668899999999999999999986332     3677777543 2344557789999999999999999999998654


Q ss_pred             CceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        172 PDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       172 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                       ..++||||+++++|.+++.... ..+++..+..++.|++.||.|||+.+  |+||||||+|||++
T Consensus        86 -~~~~v~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~--i~H~dlkp~Nil~~  147 (281)
T 3cc6_A           86 -PTWIIMELYPYGELGHYLERNK-NSLKVLTLVLYSLQICKAMAYLESIN--CVHRDIAVRNILVA  147 (281)
T ss_dssp             -SCEEEEECCTTCBHHHHHHHHT-TTCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCSGGGEEEE
T ss_pred             -CCEEEEecCCCCCHHHHHHhcc-ccCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCccceEEEC
Confidence             5789999999999999998644 25899999999999999999999999  99999999999986

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.93  E-value=7.5e-26  Score=175.69  Aligned_cols=134  Identities=16%  Similarity=0.318  Sum_probs=113.6

Q ss_pred             CCCCCCcccc-cccCCCCCCceeecc----CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCc
Q psy12580         99 ISLNDLSLHT-KISSGPNGDTWRGRW----QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPD  173 (239)
Q Consensus        99 ~~~~~~~~~~-~ig~g~~g~v~~~~~----~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~  173 (239)
                      +...++.+.+ .||+|+||.||+|.+    .+..+++|++... ......+.+.+|+.++..++||||+++++++. .+.
T Consensus         6 ~~~~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~   83 (287)
T 1u59_A            6 LKRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQG-TEKADTEEMMREAQIMHQLDNPYIVRLIGVCQ-AEA   83 (287)
T ss_dssp             CCGGGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSS-CCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEE-SSS
T ss_pred             ccHHHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCc-cchhHHHHHHHHHHHHHhCCCCCEeEEEEEec-CCC
Confidence            4456666666 899999999999975    2445777887643 23445677899999999999999999999994 456


Q ss_pred             eEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        174 LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .++||||+++++|.+++.... ..+++..+..++.|++.||.|||+.+  |+||||||+|||++
T Consensus        84 ~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~--i~H~dlkp~Nili~  144 (287)
T 1u59_A           84 LMLVMEMAGGGPLHKFLVGKR-EEIPVSNVAELLHQVSMGMKYLEEKN--FVHRDLAARNVLLV  144 (287)
T ss_dssp             EEEEEECCTTEEHHHHHTTCT-TTSCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEEE
T ss_pred             cEEEEEeCCCCCHHHHHHhCC-ccCCHHHHHHHHHHHHHHHHHHHHCC--EeeCCCchheEEEc
Confidence            999999999999999997644 25999999999999999999999999  99999999999986

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=99.93  E-value=3.1e-26  Score=185.55  Aligned_cols=134  Identities=22%  Similarity=0.295  Sum_probs=115.0

Q ss_pred             CCCCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCC--ceE
Q psy12580        100 SLNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP--DLV  175 (239)
Q Consensus       100 ~~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~--~~~  175 (239)
                      ....|.+.+.||+|+||.||+|.+.  +..+++|++..... ....+.+.+|+.+++.++||||+++++++...+  ..+
T Consensus         7 ~~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~   85 (396)
T 4eut_A            7 SNHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISF-LRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKV   85 (396)
T ss_dssp             SSEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGG-GSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEE
T ss_pred             CCCceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccc-cchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeE
Confidence            3467889999999999999999874  57788898865432 223466789999999999999999999987655  789


Q ss_pred             EEEeeCCCCCHHHHhhcCCC-cccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCcccee
Q psy12580        176 VISQYMAWGSLYALLHEGAG-IVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV  236 (239)
Q Consensus       176 lv~e~~~~gsL~~~l~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill  236 (239)
                      +||||+++|+|.+++..... ..+++..++.++.|++.||+|||+.+  |+||||||+|||+
T Consensus        86 lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~--ivH~Dlkp~NIll  145 (396)
T 4eut_A           86 LIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENG--IVHRNIKPGNIMR  145 (396)
T ss_dssp             EEECCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEE
T ss_pred             EEEecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHHCC--EEECCcCHHHEEE
Confidence            99999999999999986432 23899999999999999999999999  9999999999998

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=99.93  E-value=1.2e-26  Score=184.81  Aligned_cols=137  Identities=12%  Similarity=0.172  Sum_probs=119.5

Q ss_pred             CCCCCCcccccccCCCCCCceeeccCCCceeeeeeeeccCCch---------------HHHHHHHHHhHhhhcCCCceee
Q psy12580         99 ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPR---------------VSRDFNEEFPKLRIFSHPNVLP  163 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~vk~~~~~~~~~~---------------~~~~~~~e~~~l~~l~h~~iv~  163 (239)
                      ....+|.+.+.||+|+||.||+|...+..+++|.+........               ..+.+.+|+.++..++||||++
T Consensus        28 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~  107 (348)
T 2pml_X           28 KYINDYRIIRTLNQGKFNKIILCEKDNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLT  107 (348)
T ss_dssp             EEETTEEEEEEEECCSSCCEEEEEETTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCC
T ss_pred             cccCceEEEEEEcCCCCeEEEEEEcCCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcce
Confidence            3457889999999999999999999778888998865432211               1267889999999999999999


Q ss_pred             eeeeeeCCCceEEEEeeCCCCCHHHH------hhcCCCcccCHHHHHHHHHHHHHHhhhhhc-CCCCcccCCCCCcccee
Q psy12580        164 VIGCVNSPPDLVVISQYMAWGSLYAL------LHEGAGIVVDFAQALRFAVDVARGMAFLHS-LERIIPQYQLNSRHVMV  236 (239)
Q Consensus       164 l~~~~~~~~~~~lv~e~~~~gsL~~~------l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~-~~~~ivHrdikp~Nill  236 (239)
                      +++++...+..++||||+++|+|.++      +.......+++..++.++.|++.||.|||+ .|  |+||||||+|||+
T Consensus       108 ~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~--i~H~dl~p~Nil~  185 (348)
T 2pml_X          108 CEGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHNEKN--ICHRDVKPSNILM  185 (348)
T ss_dssp             CSEEEESSSEEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTSC--EECCCCCGGGEEE
T ss_pred             EEEEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHHHhccCC--EeecCCChHhEEE
Confidence            99999999999999999999999999      665333479999999999999999999999 99  9999999999998


Q ss_pred             e
Q psy12580        237 Y  237 (239)
Q Consensus       237 ~  237 (239)
                      +
T Consensus       186 ~  186 (348)
T 2pml_X          186 D  186 (348)
T ss_dssp             C
T ss_pred             c
Confidence            6

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.93  E-value=3e-26  Score=196.58  Aligned_cols=136  Identities=19%  Similarity=0.214  Sum_probs=116.0

Q ss_pred             CCCCCCCcccccccCCCCCCceeeccC--CCceeeeeeeeccC-CchHHHHHHHHHhHhhhc-CCCceeeeeeeeeCCCc
Q psy12580         98 GISLNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNC-TPRVSRDFNEEFPKLRIF-SHPNVLPVIGCVNSPPD  173 (239)
Q Consensus        98 ~~~~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~-~~~~~~~~~~e~~~l~~l-~h~~iv~l~~~~~~~~~  173 (239)
                      .+...+|.+.+.||+|+||.||+|...  +..+|+|++..... .......+..|..++..+ .||+|+++++++...+.
T Consensus       337 ~~~~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~  416 (674)
T 3pfq_A          337 RMKLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDR  416 (674)
T ss_dssp             ---CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSE
T ss_pred             cccccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCE
Confidence            345678999999999999999999874  45688898865321 122235677889999887 78999999999999999


Q ss_pred             eEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        174 LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ++|||||+++|+|.+++....  .+++..++.++.||+.||+|||+.+  ||||||||+|||||
T Consensus       417 ~~lV~E~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~g--IiHrDLKp~NILl~  476 (674)
T 3pfq_A          417 LYFVMEYVNGGDLMYHIQQVG--RFKEPHAVFYAAEIAIGLFFLQSKG--IIYRDLKLDNVMLD  476 (674)
T ss_dssp             EEEEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTS--EECCCCCSTTEEEC
T ss_pred             EEEEEeCcCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCC--eEeccCChhhEEEc
Confidence            999999999999999998765  6999999999999999999999999  99999999999996

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=99.93  E-value=4.5e-26  Score=175.97  Aligned_cols=129  Identities=18%  Similarity=0.279  Sum_probs=114.2

Q ss_pred             CCCcccccccCCCCCCceeeccCC--CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEe
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRWQK--NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQ  179 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~~~--~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e  179 (239)
                      +.|.+.+.||+|+||.||+|...+  ..+++|.+.....  ...+.+.+|+.+++.++||||+++++++...+..++|||
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~--~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   86 (277)
T 3f3z_A            9 QYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFV--EDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVME   86 (277)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGC--SCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             hhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhcc--chHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEEEe
Confidence            457888999999999999998744  4567777765432  234678899999999999999999999999999999999


Q ss_pred             eCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCcccee
Q psy12580        180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV  236 (239)
Q Consensus       180 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill  236 (239)
                      |+++++|.+++....  .+++..+..++.|++.||.|||+.+  |+||||||+|||+
T Consensus        87 ~~~~~~L~~~~~~~~--~~~~~~~~~i~~~i~~~l~~lH~~~--i~H~dlkp~Nil~  139 (277)
T 3f3z_A           87 LCTGGELFERVVHKR--VFRESDAARIMKDVLSAVAYCHKLN--VAHRDLKPENFLF  139 (277)
T ss_dssp             CCCSCBHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEE
T ss_pred             ccCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCC--ccCCCCCHHHEEE
Confidence            999999999998765  6899999999999999999999999  9999999999998

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=99.93  E-value=6e-26  Score=178.57  Aligned_cols=137  Identities=15%  Similarity=0.196  Sum_probs=115.7

Q ss_pred             cCCCCCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeee----C
Q psy12580         97 KGISLNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVN----S  170 (239)
Q Consensus        97 ~~~~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~----~  170 (239)
                      ..+...+|.+.+.||+|+||.||++..  .+..+++|++...  .....+.+.+|+.+++.++||||+++++++.    .
T Consensus        24 ~~i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~  101 (317)
T 2buj_A           24 VIIDNKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCH--EQQDREEAQREADMHRLFNHPNILRLVAYCLRERGA  101 (317)
T ss_dssp             EEETTEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEES--SHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETT
T ss_pred             EEECCeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecC--CHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCC
Confidence            345667899999999999999999985  5677888887543  3445577889999999999999999999986    3


Q ss_pred             CCceEEEEeeCCCCCHHHHhhcC--CCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        171 PPDLVVISQYMAWGSLYALLHEG--AGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       171 ~~~~~lv~e~~~~gsL~~~l~~~--~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ....++||||+++|+|.+++...  .+..+++..++.++.|++.||.|||+.+  |+||||||+|||++
T Consensus       102 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~--ivH~dlkp~NIl~~  168 (317)
T 2buj_A          102 KHEAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHAKG--YAHRDLKPTNILLG  168 (317)
T ss_dssp             EEEEEEEEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEEC
T ss_pred             CceeEEEEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCC--cccCCCCHHHEEEc
Confidence            34789999999999999999762  2236999999999999999999999999  99999999999996

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=99.93  E-value=1.2e-25  Score=176.19  Aligned_cols=134  Identities=18%  Similarity=0.244  Sum_probs=110.1

Q ss_pred             CCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCC---chHHHHHHHHHhHhhhc---CCCceeeeeeeeeCCC
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCT---PRVSRDFNEEFPKLRIF---SHPNVLPVIGCVNSPP  172 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~---~~~~~~~~~e~~~l~~l---~h~~iv~l~~~~~~~~  172 (239)
                      .++|.+.+.||+|+||.||+|..  .+..+++|++......   ......+.+|+.+++.+   .||||+++++++....
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~~   87 (308)
T 3g33_A            8 TSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATSR   87 (308)
T ss_dssp             --CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEECC
T ss_pred             ccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeeccC
Confidence            46789999999999999999985  5577888988654321   11123456777777665   5999999999987655


Q ss_pred             -----ceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        173 -----DLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       173 -----~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                           ..++||||+. |+|.+++.......+++..++.++.|++.||+|||+.+  |+||||||+|||++
T Consensus        88 ~~~~~~~~lv~e~~~-~~L~~~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~--ivH~Dlkp~Nil~~  154 (308)
T 3g33_A           88 TDREIKVTLVFEHVD-QDLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFLHANC--IVHRDLKPENILVT  154 (308)
T ss_dssp             SSSEEEEEEEEECCC-CBHHHHHHTCCTTCSCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCTTTEEEC
T ss_pred             CCCceeEEEEehhhh-cCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCCHHHEEEc
Confidence                 5899999997 59999999876556999999999999999999999999  99999999999986

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=99.93  E-value=3.1e-26  Score=180.89  Aligned_cols=134  Identities=18%  Similarity=0.363  Sum_probs=111.1

Q ss_pred             CCCCCCcccccccCCCCCCceeeccC--CCc----eeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCC
Q psy12580         99 ISLNDLSLHTKISSGPNGDTWRGRWQ--KND----IVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP  172 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g~~g~v~~~~~~--~~~----~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~  172 (239)
                      +...+|.+.+.||+|+||.||+|.+.  +..    +++|.+.... .......+.+|+.++..++||||+++++++. .+
T Consensus        10 ~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~   87 (325)
T 3kex_A           10 FKETELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKS-GRQSFQAVTDHMLAIGSLDHAHIVRLLGLCP-GS   87 (325)
T ss_dssp             CCTTTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTT-SCSCBCSCCHHHHHHHTCCCTTBCCEEEEEC-BS
T ss_pred             cCHhHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccc-cHHHHHHHHHHHHHHhcCCCCCcCeEEEEEc-CC
Confidence            45678899999999999999999873  333    4445553322 1222345778999999999999999999986 45


Q ss_pred             ceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        173 DLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       173 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ..++||||+.+|+|.+++.... ..+++..+..++.|++.||.|||+.+  |+||||||+|||++
T Consensus        88 ~~~~v~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~--ivH~Dikp~Nil~~  149 (325)
T 3kex_A           88 SLQLVTQYLPLGSLLDHVRQHR-GALGPQLLLNWGVQIAKGMYYLEEHG--MVHRNLAARNVLLK  149 (325)
T ss_dssp             SEEEEEECCTTCBSHHHHHSSG-GGSCTTHHHHHHHHHHHHHHHHHHTT--CCCSCCSSTTEEES
T ss_pred             ccEEEEEeCCCCCHHHHHHHcc-ccCCHHHHHHHHHHHHHHHHHHHhCC--CCCCccchheEEEC
Confidence            6899999999999999998753 26899999999999999999999999  99999999999985

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=99.93  E-value=6.1e-26  Score=177.02  Aligned_cols=132  Identities=24%  Similarity=0.325  Sum_probs=110.0

Q ss_pred             CCCcccccccCCCCCCceeeccCC---C--ceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeee-CCCceE
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRWQK---N--DIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVN-SPPDLV  175 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~~~---~--~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~-~~~~~~  175 (239)
                      ..|.+.+.||+|+||.||+|.+.+   .  .+++|.+.. .......+.+.+|+.++++++||||+++++++. ..+..+
T Consensus        25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~-~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~  103 (298)
T 3f66_A           25 LIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNR-ITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPL  103 (298)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETT-CCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCE
T ss_pred             eehhhcceeeecCCceEEEEEEecCCCceeEEEEEeccc-CCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCceE
Confidence            456788999999999999998632   2  245555543 233445577899999999999999999999864 455889


Q ss_pred             EEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        176 VISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       176 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +||||+++|+|.+++.... ..+++..+..++.|++.||.|||+.+  |+||||||+|||++
T Consensus       104 ~v~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~ql~~~l~~lH~~~--i~H~dikp~Nil~~  162 (298)
T 3f66_A          104 VVLPYMKHGDLRNFIRNET-HNPTVKDLIGFGLQVAKGMKYLASKK--FVHRDLAARNCMLD  162 (298)
T ss_dssp             EEEECCTTCBHHHHHHCTT-CCCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSGGGEEEC
T ss_pred             EEEeCCCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHhCC--ccCCCCchheEEEC
Confidence            9999999999999998644 35899999999999999999999999  99999999999986

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=99.93  E-value=3.5e-26  Score=176.50  Aligned_cols=135  Identities=18%  Similarity=0.389  Sum_probs=118.2

Q ss_pred             CCCCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccC-CchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceE
Q psy12580         99 ISLNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNC-TPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLV  175 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~  175 (239)
                      +...+|.+.+.||+|+||.||+|..  .+..+++|++..... .......+.+|+.+++.++||||+++++++...+..+
T Consensus         8 ~~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   87 (276)
T 2h6d_A            8 VKIGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFF   87 (276)
T ss_dssp             CEETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEE
T ss_pred             ceeccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEE
Confidence            3456788999999999999999987  467788898865421 1223457889999999999999999999999999999


Q ss_pred             EEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        176 VISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       176 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +||||+++++|.+++....  .+++..+..++.|++.||.|||+.+  |+||||||+|||++
T Consensus        88 lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~--i~H~dl~p~Nil~~  145 (276)
T 2h6d_A           88 MVMEYVSGGELFDYICKHG--RVEEMEARRLFQQILSAVDYCHRHM--VVHRDLKPENVLLD  145 (276)
T ss_dssp             EEEECCCSCBHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHHC--SSCCCCCGGGEEEC
T ss_pred             EEEeccCCCcHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHHCC--CccCCCChhhEEEC
Confidence            9999999999999998765  6899999999999999999999999  99999999999986

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=99.93  E-value=5.7e-26  Score=175.26  Aligned_cols=131  Identities=16%  Similarity=0.299  Sum_probs=116.4

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEe
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQ  179 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e  179 (239)
                      ++|.+.+.||+|+||.||+|..  .+..+++|++..... ....+.+.+|+.+++.++||||+++++++...+..++|||
T Consensus         7 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   85 (276)
T 2yex_A            7 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRA-VDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLE   85 (276)
T ss_dssp             HHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGC-TTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             cceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccc-hhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEEEE
Confidence            4678889999999999999987  357788888865443 2345678899999999999999999999999999999999


Q ss_pred             eCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       180 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |+++++|.+++....  .+++..+..++.|++.||.|||+.+  |+||||||+||+++
T Consensus        86 ~~~~~~L~~~l~~~~--~~~~~~~~~~~~~i~~~l~~lH~~~--i~H~dl~p~Nil~~  139 (276)
T 2yex_A           86 YCSGGELFDRIEPDI--GMPEPDAQRFFHQLMAGVVYLHGIG--ITHRDIKPENLLLD  139 (276)
T ss_dssp             CCTTEEGGGGSBTTT--BCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEEC
T ss_pred             ecCCCcHHHHHhhcc--CCCHHHHHHHHHHHHHHHHHHHhCC--eeccCCChHHEEEc
Confidence            999999999998765  6899999999999999999999999  99999999999986

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=99.93  E-value=5.5e-26  Score=176.00  Aligned_cols=128  Identities=20%  Similarity=0.332  Sum_probs=111.0

Q ss_pred             CCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeC---------
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNS---------  170 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~---------  170 (239)
                      .+|...+.||+|+||.||+|...  +..+++|.+....      ..+.+|+.+++.++||||+++++++..         
T Consensus        11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~------~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~   84 (284)
T 2a19_B           11 MDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN------EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSS   84 (284)
T ss_dssp             HHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS------GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC-----
T ss_pred             cccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc------HHHHHHHHHHHhCCCCCEEEEeeeEeccccCccccc
Confidence            45778899999999999999874  6778888886432      346689999999999999999998754         


Q ss_pred             -------CCceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        171 -------PPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       171 -------~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                             ....++||||+++|+|.+++....+..+++..++.++.|++.||.|||+.+  |+||||||+|||++
T Consensus        85 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~--i~H~dlkp~Nil~~  156 (284)
T 2a19_B           85 KNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKK--LINRDLKPSNIFLV  156 (284)
T ss_dssp             ----CCEEEEEEEEECCCCSCBHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEEE
T ss_pred             ccccccCcceEEEEEeccCCCCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhCC--eeeccCCHHHEEEc
Confidence                   335899999999999999998654446999999999999999999999999  99999999999986

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=99.93  E-value=8e-26  Score=178.72  Aligned_cols=134  Identities=21%  Similarity=0.415  Sum_probs=109.9

Q ss_pred             CCCCCCcccccccCCCCCCceeeccC--CCce----eeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCC
Q psy12580         99 ISLNDLSLHTKISSGPNGDTWRGRWQ--KNDI----VAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP  172 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g~~g~v~~~~~~--~~~~----~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~  172 (239)
                      +...+|...+.||+|+||.||+|.+.  +..+    ++|.+... ......+.+.+|+.+++.++||||+++++++..+.
T Consensus        12 l~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~   90 (327)
T 3poz_A           12 LKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREA-TSPKANKEILDEAYVMASVDNPHVCRLLGICLTST   90 (327)
T ss_dssp             CCGGGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC--------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSS
T ss_pred             cCHHHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccc-cCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCC
Confidence            45577899999999999999999873  3333    44555332 22334567899999999999999999999998765


Q ss_pred             ceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        173 DLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       173 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                       .++|+||+.+|+|.+++..... .+++..++.++.|++.||.|||+.+  |+||||||+|||++
T Consensus        91 -~~~v~e~~~~g~L~~~l~~~~~-~~~~~~~~~~~~qi~~~l~~LH~~~--ivH~Dikp~NIll~  151 (327)
T 3poz_A           91 -VQLITQLMPFGCLLDYVREHKD-NIGSQYLLNWCVQIAKGMNYLEDRR--LVHRDLAARNVLVK  151 (327)
T ss_dssp             -EEEEEECCTTCBHHHHHHHSTT-SCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEEE
T ss_pred             -eEEEEEecCCCcHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHhhCC--eeCCCCChheEEEC
Confidence             7899999999999999987542 5899999999999999999999999  99999999999986

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=99.93  E-value=7.1e-26  Score=186.75  Aligned_cols=130  Identities=16%  Similarity=0.227  Sum_probs=112.4

Q ss_pred             CCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCC------
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP------  172 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~------  172 (239)
                      ...|.+.+.||+|+||.||+|..  .+..+++|++..........+.+.+|+.+++.++||||+++++++....      
T Consensus        61 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~  140 (464)
T 3ttj_A           61 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQ  140 (464)
T ss_dssp             ETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCC
T ss_pred             cCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccCC
Confidence            36788999999999999999976  4677888988765445555678889999999999999999999996553      


Q ss_pred             ceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        173 DLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       173 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .+++||||+++ +|.+.+..    .+++..+..++.|++.||+|||+.|  |+||||||+|||++
T Consensus       141 ~~~lv~E~~~~-~l~~~~~~----~l~~~~~~~~~~qil~aL~~lH~~~--iiHrDlkp~NIll~  198 (464)
T 3ttj_A          141 DVYLVMELMDA-NLCQVIQM----ELDHERMSYLLYQMLCGIKHLHSAG--IIHRDLKPSNIVVK  198 (464)
T ss_dssp             EEEEEEECCSE-EHHHHHTS----CCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCGGGEEEC
T ss_pred             eEEEEEeCCCC-CHHHHHhh----cCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCChHhEEEe
Confidence            57999999976 67777754    4889999999999999999999999  99999999999996

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=99.93  E-value=6.7e-26  Score=179.70  Aligned_cols=131  Identities=27%  Similarity=0.471  Sum_probs=108.8

Q ss_pred             cCCCCCCCcccccccCCCCCCceeeccCCCceeeeeeeeccCCchHHHHHHHHHh--HhhhcCCCceeeeeeeee-----
Q psy12580         97 KGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFP--KLRIFSHPNVLPVIGCVN-----  169 (239)
Q Consensus        97 ~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~e~~--~l~~l~h~~iv~l~~~~~-----  169 (239)
                      ..+..++|.+.+.||+|+||.||+|.+.+..+++|++....     ...+..|..  .+..++||||+++++.+.     
T Consensus         8 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~vavK~~~~~~-----~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~   82 (336)
T 3g2f_A            8 PSLDLDNLKLLELIGRGRYGAVYKGSLDERPVAVKVFSFAN-----RQNFINEKNIYRVPLMEHDNIARFIVGDERVTAD   82 (336)
T ss_dssp             -CCCTTSEEEEEEEEECSSEEEEEEEETTEEEEEEEEEGGG-----HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTT
T ss_pred             CCcChHHhheeeecccCCCeEEEEEEECCeEEEEEEeeccc-----hhhHHHHHHHHHHHhccCcchhhheecccccccC
Confidence            45677899999999999999999999988999999986432     233334444  455689999999997542     


Q ss_pred             CCCceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcC---------CCCcccCCCCCccceee
Q psy12580        170 SPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSL---------ERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       170 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---------~~~ivHrdikp~Nill~  237 (239)
                      ....+++||||+++|+|.+++....   .++..+..++.|++.||.|||+.         +  |+||||||+|||++
T Consensus        83 ~~~~~~lv~e~~~~g~L~~~l~~~~---~~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~--ivH~Dikp~Nill~  154 (336)
T 3g2f_A           83 GRMEYLLVMEYYPNGSLXKYLSLHT---SDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPA--ISHRDLNSRNVLVK  154 (336)
T ss_dssp             SCEEEEEEECCCTTCBHHHHHHHCC---BCHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCC--EECSSCSGGGEEEC
T ss_pred             CCceEEEEEecCCCCcHHHHHhhcc---cchhHHHHHHHHHHHHHHHHHhhhccccccccc--eeecccccceEEEc
Confidence            2236789999999999999998765   58899999999999999999998         8  99999999999986

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=99.93  E-value=4.5e-26  Score=180.16  Aligned_cols=132  Identities=17%  Similarity=0.292  Sum_probs=115.8

Q ss_pred             Cccc-ccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhc-CCCceeeeeeeeeCCCceEEEEe
Q psy12580        104 LSLH-TKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIF-SHPNVLPVIGCVNSPPDLVVISQ  179 (239)
Q Consensus       104 ~~~~-~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~l~~~~~~~~~~~lv~e  179 (239)
                      |.+. +.||+|+||.||+|...  +..+++|++............+.+|+.++..+ .||||+++++++...+..++|||
T Consensus        30 y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~~~~~lv~e  109 (327)
T 3lm5_A           30 YILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVYENTSEIILILE  109 (327)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEEE
T ss_pred             EeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEEEeCCeEEEEEE
Confidence            4444 78999999999999874  67788898876655555567889999999999 56999999999999999999999


Q ss_pred             eCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       180 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |+++|+|.+++.......+++..++.++.|++.||+|||+.|  |+||||||+|||++
T Consensus       110 ~~~~~~L~~~~~~~~~~~~~~~~~~~i~~ql~~~L~~LH~~g--ivH~Dikp~NIl~~  165 (327)
T 3lm5_A          110 YAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYYLHQNN--IVHLDLKPQNILLS  165 (327)
T ss_dssp             CCTTEEGGGGGSSCC-CCCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCCGGGEEES
T ss_pred             ecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCC--eecCcCChHHEEEe
Confidence            999999999997654457999999999999999999999999  99999999999986

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=99.93  E-value=2.8e-26  Score=177.80  Aligned_cols=135  Identities=16%  Similarity=0.319  Sum_probs=117.5

Q ss_pred             CCCCCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCC-chHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceE
Q psy12580         99 ISLNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCT-PRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLV  175 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~  175 (239)
                      ...++|.+.+.||+|+||.||+|...  +..+++|++...... ......+.+|+.+++.++||||+++++++...+..+
T Consensus        11 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   90 (284)
T 2vgo_A           11 FTIDDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIY   90 (284)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEE
T ss_pred             hhhhhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEE
Confidence            45578899999999999999999874  456777887543211 122356889999999999999999999999999999


Q ss_pred             EEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        176 VISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       176 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +||||+++|+|.+++....  .+++..+..++.|++.||.|||+.+  |+||||||+||+++
T Consensus        91 lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~--i~H~dl~p~Nil~~  148 (284)
T 2vgo_A           91 LMLEFAPRGELYKELQKHG--RFDEQRSATFMEELADALHYCHERK--VIHRDIKPENLLMG  148 (284)
T ss_dssp             EEECCCTTEEHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHTTT--EECCCCSGGGEEEC
T ss_pred             EEEEeCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCC--ceecCCCHHHEEEc
Confidence            9999999999999998765  6899999999999999999999999  99999999999986

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=99.93  E-value=1.3e-25  Score=177.55  Aligned_cols=134  Identities=21%  Similarity=0.415  Sum_probs=113.2

Q ss_pred             CCCCCCcccccccCCCCCCceeeccC--CCce----eeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCC
Q psy12580         99 ISLNDLSLHTKISSGPNGDTWRGRWQ--KNDI----VAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP  172 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g~~g~v~~~~~~--~~~~----~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~  172 (239)
                      +...+|.+.+.||+|+||.||+|.+.  +..+    ++|.+... ......+.+.+|+.+++.++||||+++++++..+.
T Consensus        12 l~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~-~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~   90 (327)
T 3lzb_A           12 LKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREA-TSPKANKEILDEAYVMASVDNPHVCRLLGICLTST   90 (327)
T ss_dssp             CCTTTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCC-SSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSS
T ss_pred             cCHhHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccc-cCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCC
Confidence            45678999999999999999999873  3444    33444322 23344577889999999999999999999998765


Q ss_pred             ceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        173 DLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       173 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                       .++|+||+.+|+|.+++..... .+++..++.++.|++.||.|||+.+  |+||||||+|||++
T Consensus        91 -~~~v~~~~~~g~L~~~l~~~~~-~~~~~~~~~i~~qi~~aL~~LH~~~--ivH~Dikp~NIl~~  151 (327)
T 3lzb_A           91 -VQLITQLMPFGCLLDYVREHKD-NIGSQYLLNWCVQIAKGMNYLEDRR--LVHRDLAARNVLVK  151 (327)
T ss_dssp             -EEEEECCCSSCBHHHHHHHTTT-CCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEEE
T ss_pred             -ceEEEEecCCCcHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHhhCC--CcCCCCCHHHEEEc
Confidence             8899999999999999987543 5899999999999999999999999  99999999999986

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=99.93  E-value=5.2e-26  Score=175.78  Aligned_cols=137  Identities=19%  Similarity=0.240  Sum_probs=115.8

Q ss_pred             CCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeee--CCCceEE
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVN--SPPDLVV  176 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~--~~~~~~l  176 (239)
                      .++|.+.+.||+|+||.||++..  .+..+++|.+..........+.+.+|+.+++.++||||+++++++.  .....++
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l   84 (279)
T 2w5a_A            5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYI   84 (279)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEEE
T ss_pred             hhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEEE
Confidence            46788999999999999999987  3566778888766555666678999999999999999999999874  4568999


Q ss_pred             EEeeCCCCCHHHHhhcCC--CcccCHHHHHHHHHHHHHHhhhhhcCC---CCcccCCCCCccceee
Q psy12580        177 ISQYMAWGSLYALLHEGA--GIVVDFAQALRFAVDVARGMAFLHSLE---RIIPQYQLNSRHVMVY  237 (239)
Q Consensus       177 v~e~~~~gsL~~~l~~~~--~~~~~~~~~~~~~~~i~~~l~~lH~~~---~~ivHrdikp~Nill~  237 (239)
                      ||||+++|+|.+++....  ...+++..++.++.|++.||.|||+.+   .+|+||||||+|||++
T Consensus        85 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~ivH~dl~p~NIl~~  150 (279)
T 2w5a_A           85 VMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLD  150 (279)
T ss_dssp             EEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHC------CCCCCSGGGEEEC
T ss_pred             EEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhcccCCCCeeEEeccchhhEEEc
Confidence            999999999999997532  234899999999999999999999976   3499999999999986

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=99.93  E-value=1.4e-25  Score=177.28  Aligned_cols=135  Identities=23%  Similarity=0.391  Sum_probs=115.4

Q ss_pred             CCCCCCCcccccccCCCCCCceeecc------CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCC
Q psy12580         98 GISLNDLSLHTKISSGPNGDTWRGRW------QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSP  171 (239)
Q Consensus        98 ~~~~~~~~~~~~ig~g~~g~v~~~~~------~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~  171 (239)
                      .+...+|.+.+.||+|+||.||++.+      .+..+++|.+...  .....+.+.+|+.+++.++||||+++++++...
T Consensus        37 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~  114 (326)
T 2w1i_A           37 QFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHS--TEEHLRDFEREIEILKSLQHDNIVKYKGVCYSA  114 (326)
T ss_dssp             CCCGGGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSC--CSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC-
T ss_pred             ccCHHHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccC--CHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEec
Confidence            34557788999999999999999974      3456777887543  344557789999999999999999999988665


Q ss_pred             C--ceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        172 P--DLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       172 ~--~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +  ..++||||+++|+|.+++..... .+++..++.++.|++.||.|||+.+  |+||||||+|||++
T Consensus       115 ~~~~~~lv~e~~~~~~L~~~l~~~~~-~~~~~~~~~i~~qi~~aL~~LH~~~--ivH~dikp~NIli~  179 (326)
T 2w1i_A          115 GRRNLKLIMEYLPYGSLRDYLQKHKE-RIDHIKLLQYTSQICKGMEYLGTKR--YIHRDLATRNILVE  179 (326)
T ss_dssp             ---CCEEEECCCTTCBHHHHHHHSTT-SSCHHHHHHHHHHHHHHHHHHHHTT--EECSCCCGGGEEEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHhccc-CCCHHHHHHHHHHHHHHHHHHHhCC--EeccCCCcceEEEc
Confidence            4  78999999999999999987642 5899999999999999999999999  99999999999986

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=99.93  E-value=2.8e-25  Score=174.25  Aligned_cols=136  Identities=15%  Similarity=0.285  Sum_probs=116.4

Q ss_pred             CCCCCcccccccCCCCCCceeecc--CCCceeeeeeeecc-CCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEE
Q psy12580        100 SLNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRN-CTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVV  176 (239)
Q Consensus       100 ~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~l  176 (239)
                      ...+|.+.+.||+|+||.||+|..  .+..+++|.+.... ........+.+|+.+++.++||||+++++++...+..++
T Consensus        30 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~l  109 (310)
T 2wqm_A           30 TLANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNI  109 (310)
T ss_dssp             SGGGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEE
T ss_pred             cccceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEEE
Confidence            346788999999999999999985  56778888886533 234455778899999999999999999999999999999


Q ss_pred             EEeeCCCCCHHHHhhcC--CCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        177 ISQYMAWGSLYALLHEG--AGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       177 v~e~~~~gsL~~~l~~~--~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||||+++|+|.+++...  ....+++..++.++.|++.||.|||+.+  |+||||||+|||++
T Consensus       110 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~--i~H~dl~p~NIl~~  170 (310)
T 2wqm_A          110 VLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSRR--VMHRDIKPANVFIT  170 (310)
T ss_dssp             EEECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCGGGEEEC
T ss_pred             EEecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHhhCC--eeCCCCcHHHEEEc
Confidence            99999999999999741  2236899999999999999999999999  99999999999986

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=99.93  E-value=1e-25  Score=179.79  Aligned_cols=133  Identities=16%  Similarity=0.268  Sum_probs=113.7

Q ss_pred             CCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeC--------
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNS--------  170 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~--------  170 (239)
                      ..+|.+.+.||+|+||.||+|..  .+..+++|++............+.+|+.+++.++||||+++++++..        
T Consensus        16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   95 (351)
T 3mi9_A           16 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC   95 (351)
T ss_dssp             GGGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC-------
T ss_pred             ccceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccC
Confidence            46788999999999999999987  45678888886654444444567899999999999999999999876        


Q ss_pred             CCceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        171 PPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       171 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .+..++||||+++ +|.+.+..... .+++..++.++.|++.||.|||+.|  |+||||||+|||++
T Consensus        96 ~~~~~lv~e~~~~-~l~~~l~~~~~-~~~~~~~~~i~~qi~~~l~~LH~~~--ivH~Dlkp~NIl~~  158 (351)
T 3mi9_A           96 KGSIYLVFDFCEH-DLAGLLSNVLV-KFTLSEIKRVMQMLLNGLYYIHRNK--ILHRDMKAANVLIT  158 (351)
T ss_dssp             -CEEEEEEECCSE-EHHHHHHCTTS-CCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEEC
T ss_pred             CceEEEEEeccCC-CHHHHHhhccC-CCCHHHHHHHHHHHHHHHHHHHHCC--eeCCCCCHHHEEEc
Confidence            3468999999976 88888876542 5999999999999999999999999  99999999999986

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=99.93  E-value=4.6e-26  Score=179.68  Aligned_cols=131  Identities=15%  Similarity=0.255  Sum_probs=110.3

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCC------chHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCc
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCT------PRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPD  173 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~------~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~  173 (239)
                      ++|.+.+.||+|+||.||+|..  .+..+++|++......      ......+.+|+.+++.++||||+++++++.... 
T Consensus        10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~-   88 (322)
T 2ycf_A           10 DEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAED-   88 (322)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESSS-
T ss_pred             hceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCCc-
Confidence            4678889999999999999987  3467888988654221      122345789999999999999999999987665 


Q ss_pred             eEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        174 LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .++||||+++|+|.+++....  .+++..+..++.|++.||.|||+.+  |+||||||+|||++
T Consensus        89 ~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~--ivH~dlkp~NIl~~  148 (322)
T 2ycf_A           89 YYIVLELMEGGELFDKVVGNK--RLKEATCKLYFYQMLLAVQYLHENG--IIHRDLKPENVLLS  148 (322)
T ss_dssp             EEEEEECCTTEETHHHHSTTC--CCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEES
T ss_pred             eEEEEecCCCCcHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHHCC--eeccCCCHHHEEEe
Confidence            899999999999999998765  6999999999999999999999999  99999999999985

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=99.93  E-value=6.7e-26  Score=180.54  Aligned_cols=132  Identities=18%  Similarity=0.244  Sum_probs=113.4

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCC-chHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEE
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCT-PRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVIS  178 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~  178 (239)
                      ..|...+.||+|+||.||+|..  .+..+++|.+...... ....+.+.+|+.+++.++||||+++++++...+..++||
T Consensus        54 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~  133 (348)
T 1u5q_A           54 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVM  133 (348)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             hheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEEE
Confidence            3467788999999999999985  5667888888654332 233467889999999999999999999999999999999


Q ss_pred             eeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        179 QYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       179 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||+. |+|.+++.... ..+++..+..++.|+++||.|||+.+  |+||||||+|||++
T Consensus       134 e~~~-g~l~~~l~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~~--ivH~Dlkp~NIll~  188 (348)
T 1u5q_A          134 EYCL-GSASDLLEVHK-KPLQEVEIAAVTHGALQGLAYLHSHN--MIHRDVKAGNILLS  188 (348)
T ss_dssp             ECCS-EEHHHHHHHHT-SCCCHHHHHHHHHHHHHHHHHHHHTT--CBCCCCSGGGEEEE
T ss_pred             ecCC-CCHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhCC--eeeCCCCHHHEEEC
Confidence            9997 58888886533 26899999999999999999999999  99999999999996

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=99.93  E-value=8.8e-26  Score=177.45  Aligned_cols=138  Identities=22%  Similarity=0.349  Sum_probs=116.7

Q ss_pred             cCCCCCCCcccccccCCCCCCceeecc-------CCCceeeeeeeeccCCchHHHHHHHHHhHhhhc-CCCceeeeeeee
Q psy12580         97 KGISLNDLSLHTKISSGPNGDTWRGRW-------QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIF-SHPNVLPVIGCV  168 (239)
Q Consensus        97 ~~~~~~~~~~~~~ig~g~~g~v~~~~~-------~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~l~~~~  168 (239)
                      +.+..++|.+.+.||+|+||.||+|.+       .+..+++|++... ......+.+.+|+.++..+ +||||+++++++
T Consensus        22 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~  100 (316)
T 2xir_A           22 WEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEG-ATHSEHRALMSELKILIHIGHHLNVVNLLGAC  100 (316)
T ss_dssp             HBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTT-CCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             eecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccC-CCcHHHHHHHHHHHHHHhcccCCCeeeEEEEE
Confidence            445668899999999999999999974       2356777887543 2344456789999999999 689999999998


Q ss_pred             eCCC-ceEEEEeeCCCCCHHHHhhcCCCc--------------ccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCcc
Q psy12580        169 NSPP-DLVVISQYMAWGSLYALLHEGAGI--------------VVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRH  233 (239)
Q Consensus       169 ~~~~-~~~lv~e~~~~gsL~~~l~~~~~~--------------~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~N  233 (239)
                      ...+ ..++||||+++|+|.+++......              .+++..+..++.|++.||.|||+.+  |+||||||+|
T Consensus       101 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~--i~H~dikp~N  178 (316)
T 2xir_A          101 TKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRK--CIHRDLAARN  178 (316)
T ss_dssp             CCTTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSGGG
T ss_pred             ecCCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHhCC--cccccCccce
Confidence            7655 599999999999999999875521              2899999999999999999999999  9999999999


Q ss_pred             ceee
Q psy12580        234 VMVY  237 (239)
Q Consensus       234 ill~  237 (239)
                      ||++
T Consensus       179 il~~  182 (316)
T 2xir_A          179 ILLS  182 (316)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9996

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=99.93  E-value=5e-26  Score=184.44  Aligned_cols=127  Identities=13%  Similarity=0.240  Sum_probs=105.7

Q ss_pred             CCCccc-ccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhh-cCCCceeeeeeeeeC----CCc
Q psy12580        102 NDLSLH-TKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRI-FSHPNVLPVIGCVNS----PPD  173 (239)
Q Consensus       102 ~~~~~~-~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~-l~h~~iv~l~~~~~~----~~~  173 (239)
                      .+|.+. +.||+|+||.||++...  +..+++|++...       ..+.+|+.++.+ .+||||+++++++..    ...
T Consensus        61 ~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~~-------~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~  133 (400)
T 1nxk_A           61 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-------PKARREVELHWRASQCPHIVRIVDVYENLYAGRKC  133 (400)
T ss_dssp             GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS-------HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEE
T ss_pred             ccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCcc-------hhHHHHHHHHHHhcCCCCcceEeEEEeecccCCcE
Confidence            455555 68999999999999873  566888887521       345678887754 589999999998865    457


Q ss_pred             eEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        174 LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +++||||+++|+|.+++.......+++..+..++.||+.||.|||+.+  |+||||||+|||++
T Consensus       134 ~~lv~E~~~gg~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~--ivHrDlkp~Nill~  195 (400)
T 1nxk_A          134 LLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSIN--IAHRDVKPENLLYT  195 (400)
T ss_dssp             EEEEEECCCSEEHHHHHHCC---CCBHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEES
T ss_pred             EEEEEEeCCCCcHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCC--ccccCcCcceEEEe
Confidence            899999999999999998865456999999999999999999999999  99999999999996

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=99.93  E-value=1.2e-25  Score=174.73  Aligned_cols=137  Identities=15%  Similarity=0.190  Sum_probs=111.7

Q ss_pred             CCCCCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceE
Q psy12580         98 GISLNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLV  175 (239)
Q Consensus        98 ~~~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~  175 (239)
                      ++..++|.+.+.||+|+||.||++..  .+..+++|.+..........+.+..+...++.++||||+++++++...+..+
T Consensus         3 ~i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~   82 (290)
T 3fme_A            3 EVKADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVW   82 (290)
T ss_dssp             CCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEE
T ss_pred             cccHHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEE
Confidence            45667899999999999999999987  5667888888654333333344445555577889999999999999999999


Q ss_pred             EEEeeCCCCCHHHHhhc--CCCcccCHHHHHHHHHHHHHHhhhhhcC-CCCcccCCCCCccceee
Q psy12580        176 VISQYMAWGSLYALLHE--GAGIVVDFAQALRFAVDVARGMAFLHSL-ERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       176 lv~e~~~~gsL~~~l~~--~~~~~~~~~~~~~~~~~i~~~l~~lH~~-~~~ivHrdikp~Nill~  237 (239)
                      +||||+++ +|.+++..  ..+..+++..++.++.|++.||.|||+. +  |+||||||+|||++
T Consensus        83 lv~e~~~~-~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~--i~H~dlkp~Nil~~  144 (290)
T 3fme_A           83 ICMELMDT-SLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKLS--VIHRDVKPSNVLIN  144 (290)
T ss_dssp             EEEECCSE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHSC--CCCCCCSGGGCEEC
T ss_pred             EEEehhcc-chHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhcCC--eecCCCCHHHEEEC
Confidence            99999975 98888764  1223699999999999999999999997 9  99999999999986

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=99.93  E-value=2.4e-25  Score=173.90  Aligned_cols=132  Identities=17%  Similarity=0.256  Sum_probs=113.4

Q ss_pred             CCCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEE
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVIS  178 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~  178 (239)
                      .+.|.+.+.||+|+||.||+|...  +..+++|++....  ....+.+.+|+.++..++||||+++++++...+..++||
T Consensus        18 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   95 (302)
T 2j7t_A           18 NEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKS--EEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMI   95 (302)
T ss_dssp             GGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC------CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEEE
T ss_pred             ccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCC--HHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEEE
Confidence            467889999999999999999984  5567778775442  233467889999999999999999999999999999999


Q ss_pred             eeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        179 QYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       179 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||+++++|.+++.... ..+++..+..++.|++.||.|||+.+  |+||||||+|||++
T Consensus        96 e~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~--i~H~dlkp~Nil~~  151 (302)
T 2j7t_A           96 EFCPGGAVDAIMLELD-RGLTEPQIQVVCRQMLEALNFLHSKR--IIHRDLKAGNVLMT  151 (302)
T ss_dssp             ECCTTEEHHHHHHHHT-SCCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCSGGGEEEC
T ss_pred             EeCCCCcHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHhcCC--cccCCCCHHHEEEC
Confidence            9999999999987633 25899999999999999999999999  99999999999996

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=99.93  E-value=2.1e-26  Score=185.42  Aligned_cols=137  Identities=14%  Similarity=0.075  Sum_probs=109.8

Q ss_pred             CCCCCCCcccccccCCCCCCceeecc--CCCceeeeeeeecc-CCchHHHHHHHHH---hHhhhcCCCceeeee------
Q psy12580         98 GISLNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRN-CTPRVSRDFNEEF---PKLRIFSHPNVLPVI------  165 (239)
Q Consensus        98 ~~~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~-~~~~~~~~~~~e~---~~l~~l~h~~iv~l~------  165 (239)
                      .....+|.+.+.||+|+||.||+|..  .+..+++|++.... ......+.+.+|+   ..++.++||||++++      
T Consensus        69 ~~~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~  148 (377)
T 3byv_A           69 GERPRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFP  148 (377)
T ss_dssp             SCCCEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCC
T ss_pred             CCCCceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhh
Confidence            34457788999999999999999996  36788889987543 2334557788999   555666899999998      


Q ss_pred             -eeeeCCC-----------------ceEEEEeeCCCCCHHHHhhcCC-----CcccCHHHHHHHHHHHHHHhhhhhcCCC
Q psy12580        166 -GCVNSPP-----------------DLVVISQYMAWGSLYALLHEGA-----GIVVDFAQALRFAVDVARGMAFLHSLER  222 (239)
Q Consensus       166 -~~~~~~~-----------------~~~lv~e~~~~gsL~~~l~~~~-----~~~~~~~~~~~~~~~i~~~l~~lH~~~~  222 (239)
                       +++..++                 ..++||||+ +|+|.+++....     ...+++..++.++.||+.||+|||+.+ 
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~-  226 (377)
T 3byv_A          149 FDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYG-  226 (377)
T ss_dssp             SEEEECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred             hhhhhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHhCC-
Confidence             5555443                 388999999 579999998632     123445888899999999999999999 


Q ss_pred             CcccCCCCCccceee
Q psy12580        223 IIPQYQLNSRHVMVY  237 (239)
Q Consensus       223 ~ivHrdikp~Nill~  237 (239)
                       |+||||||+|||++
T Consensus       227 -ivHrDikp~NIll~  240 (377)
T 3byv_A          227 -LVHTYLRPVDIVLD  240 (377)
T ss_dssp             -EECSCCCGGGEEEC
T ss_pred             -eecCCCCHHHEEEc
Confidence             99999999999997

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=99.93  E-value=1.4e-25  Score=177.85  Aligned_cols=127  Identities=24%  Similarity=0.466  Sum_probs=109.1

Q ss_pred             CCCCcccccccCCCCCCceeeccCCCceeeeeeeeccCCchHHHHHHHHHhHhhh--cCCCceeeeeeeeeCC----Cce
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRI--FSHPNVLPVIGCVNSP----PDL  174 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~--l~h~~iv~l~~~~~~~----~~~  174 (239)
                      .++|.+.+.||+|+||.||+|.+.+..+++|++...     ....+..|..++..  ++||||+++++++...    ...
T Consensus        36 ~~~y~~~~~lg~G~~g~V~~~~~~~~~vavK~~~~~-----~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~  110 (337)
T 3mdy_A           36 AKQIQMVKQIGKGRYGEVWMGKWRGEKVAVKVFFTT-----EEASWFRETEIYQTVLMRHENILGFIAADIKGTGSWTQL  110 (337)
T ss_dssp             HHHCEEEEEEEEETTEEEEEEEETTEEEEEEEEEGG-----GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGGGCEE
T ss_pred             ccceEEEeEeecCCCeEEEEEEECCceEEEEEEecc-----ccchhhhHHHHHHHHhhcCCCeeeEEEEEccCCCCCCce
Confidence            367889999999999999999999889999988532     12334455555554  4899999999998776    679


Q ss_pred             EEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcC--------CCCcccCCCCCccceee
Q psy12580        175 VVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSL--------ERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       175 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~--------~~~ivHrdikp~Nill~  237 (239)
                      ++||||+++|+|.++++...   +++..++.++.|++.||.|||+.        +  |+||||||+|||++
T Consensus       111 ~lv~e~~~~g~L~~~l~~~~---~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~--ivH~Dikp~Nill~  176 (337)
T 3mdy_A          111 YLITDYHENGSLYDYLKSTT---LDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPA--IAHRDLKSKNILVK  176 (337)
T ss_dssp             EEEECCCTTCBHHHHHHHCC---BCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCC--EECSCCCGGGEEEC
T ss_pred             EEEEeccCCCcHHHHhhccC---CCHHHHHHHHHHHHHHHHHHHHhhhhhccCCC--EEecccchHHEEEC
Confidence            99999999999999998754   89999999999999999999998        8  99999999999996

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=99.93  E-value=2.1e-25  Score=173.92  Aligned_cols=134  Identities=16%  Similarity=0.228  Sum_probs=116.7

Q ss_pred             CCCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCC-------chHHHHHHHHHhHhhhcC-CCceeeeeeeee
Q psy12580        100 SLNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCT-------PRVSRDFNEEFPKLRIFS-HPNVLPVIGCVN  169 (239)
Q Consensus       100 ~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~-------~~~~~~~~~e~~~l~~l~-h~~iv~l~~~~~  169 (239)
                      ..++|.+.+.||+|+||.||+|..  .+..+++|++......       ....+.+.+|+.++.++. ||||+++++++.
T Consensus        15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~   94 (298)
T 1phk_A           15 FYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYE   94 (298)
T ss_dssp             CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEE
T ss_pred             hhhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeec
Confidence            347789999999999999999987  3467888888654311       122356789999999995 999999999999


Q ss_pred             CCCceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        170 SPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       170 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ..+..++||||+++++|.+++....  .+++..+..++.|++.||.|||+.|  |+||||||+||+++
T Consensus        95 ~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~--i~H~dl~p~Nil~~  158 (298)
T 1phk_A           95 TNTFFFLVFDLMKKGELFDYLTEKV--TLSEKETRKIMRALLEVICALHKLN--IVHRDLKPENILLD  158 (298)
T ss_dssp             CSSEEEEEEECCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEEC
T ss_pred             cCCeEEEEEeccCCCcHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCCcceEEEc
Confidence            9999999999999999999998755  6899999999999999999999999  99999999999986

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=99.93  E-value=1.2e-25  Score=180.24  Aligned_cols=130  Identities=15%  Similarity=0.206  Sum_probs=105.5

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCC------Cc
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSP------PD  173 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~------~~  173 (239)
                      ..|.+.+.||+|+||.||+|..  .+..+++|++..........+.+.+|+.+++.++||||+++++++...      ..
T Consensus        29 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~~~  108 (367)
T 2fst_X           29 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFND  108 (367)
T ss_dssp             TTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCCC
T ss_pred             CceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccCCe
Confidence            6788999999999999999975  467788888865544445567788999999999999999999998654      46


Q ss_pred             eEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        174 LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .++|+|++ +++|.++++..   .+++..+..++.||++||.|||+.|  |+||||||+|||++
T Consensus       109 ~~lv~e~~-~~~L~~~~~~~---~l~~~~~~~i~~qi~~aL~~LH~~g--ivH~Dlkp~NIll~  166 (367)
T 2fst_X          109 VYLVTHLM-GADLNNIVKCQ---KLTDDHVQFLIYQILRGLKYIHSAD--IIHRDLKPSNLAVN  166 (367)
T ss_dssp             CEEEEECC-CEECC-----C---CCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCGGGEEEC
T ss_pred             EEEEeccc-CCCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHCC--eeeCCCCHhhEEEC
Confidence            89999999 67999998763   4899999999999999999999999  99999999999986

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=99.93  E-value=2.1e-25  Score=176.12  Aligned_cols=133  Identities=17%  Similarity=0.318  Sum_probs=115.8

Q ss_pred             CCCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhc-CCCceeeeeeeeeC------
Q psy12580        100 SLNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIF-SHPNVLPVIGCVNS------  170 (239)
Q Consensus       100 ~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~l~~~~~~------  170 (239)
                      ....|.+.+.||+|+||.||+|.+  .+..+++|++.....   ....+.+|+.++..+ +||||+++++++..      
T Consensus        22 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~---~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~   98 (326)
T 2x7f_A           22 PAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGD---EEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGM   98 (326)
T ss_dssp             CTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSS---TTHHHHHHHHHHHHHCCSTTBCCEEEEEEECC--CC
T ss_pred             CCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCcc---cHHHHHHHHHHHHhccCCCCeeeeeeEEeeccCccc
Confidence            456788999999999999999987  567788888865432   235688999999998 79999999999866      


Q ss_pred             CCceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        171 PPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       171 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .+..++||||+++|+|.+++.......+++..+..++.|++.||.|||+.|  |+||||||+|||++
T Consensus        99 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~--ivH~dlkp~NIl~~  163 (326)
T 2x7f_A           99 DDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQHK--VIHRDIKGQNVLLT  163 (326)
T ss_dssp             CCEEEEEEECCTTEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCSGGGEEEC
T ss_pred             cceEEEEEEcCCCCcHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHCC--ccccCCcHHHEEEc
Confidence            457899999999999999998765456999999999999999999999999  99999999999986

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=99.92  E-value=1.8e-25  Score=174.88  Aligned_cols=129  Identities=15%  Similarity=0.199  Sum_probs=112.5

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEe
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQ  179 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e  179 (239)
                      ..|.+.+.||+|+||.||++..  .+..+++|.+.....  .....+.+|+.++..++||||+++++++...+..++|||
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   86 (304)
T 2jam_A            9 KTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPA--FRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQ   86 (304)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC--------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred             ccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccc--cchHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEEEE
Confidence            4577889999999999999987  467788888864322  223568899999999999999999999999999999999


Q ss_pred             eCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCcccee
Q psy12580        180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV  236 (239)
Q Consensus       180 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill  236 (239)
                      |+++++|.+++....  .+++..+..++.|++.||.|||+.+  |+||||||+|||+
T Consensus        87 ~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~--i~H~dikp~NIl~  139 (304)
T 2jam_A           87 LVSGGELFDRILERG--VYTEKDASLVIQQVLSAVKYLHENG--IVHRDLKPENLLY  139 (304)
T ss_dssp             CCCSCBHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHHHTT--CCCCSCCGGGCEE
T ss_pred             cCCCccHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCC--ccccCCCHHHEEE
Confidence            999999999998755  6899999999999999999999999  9999999999998

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=99.92  E-value=2.4e-25  Score=174.12  Aligned_cols=130  Identities=22%  Similarity=0.337  Sum_probs=115.3

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEe
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQ  179 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e  179 (239)
                      +.|...+.||+|+||.||+|..  .+..+++|++..... ....+.+.+|+.++..++||||+++++++...+..++|||
T Consensus        22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e  100 (303)
T 3a7i_A           22 ELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEA-EDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIME  100 (303)
T ss_dssp             GTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTC-STTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             HHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEeccccc-HHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEE
Confidence            5578889999999999999976  456788888865433 3345678899999999999999999999999999999999


Q ss_pred             eCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       180 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |+++++|.+++...   .+++..+..++.|++.||.|||+.|  |+||||||+|||++
T Consensus       101 ~~~~~~L~~~~~~~---~~~~~~~~~~~~qi~~~l~~lH~~~--i~H~dl~p~Nil~~  153 (303)
T 3a7i_A          101 YLGGGSALDLLEPG---PLDETQIATILREILKGLDYLHSEK--KIHRDIKAANVLLS  153 (303)
T ss_dssp             CCTTEEHHHHHTTS---CCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEEC
T ss_pred             eCCCCcHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHCC--CccCCCChheEEEC
Confidence            99999999999764   4899999999999999999999999  99999999999986

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=99.92  E-value=1.4e-25  Score=175.17  Aligned_cols=127  Identities=13%  Similarity=0.257  Sum_probs=108.9

Q ss_pred             CCCccc-ccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHh-hhcCCCceeeeeeeeeC----CCc
Q psy12580        102 NDLSLH-TKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKL-RIFSHPNVLPVIGCVNS----PPD  173 (239)
Q Consensus       102 ~~~~~~-~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l-~~l~h~~iv~l~~~~~~----~~~  173 (239)
                      .+|.+. +.||+|+||.||++..  .+..+++|++...       ..+.+|+.++ +..+||||+++++++..    ...
T Consensus        17 ~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-------~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~   89 (299)
T 3m2w_A           17 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-------PKARREVELHWRASQCPHIVRIVDVYENLYAGRKC   89 (299)
T ss_dssp             GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS-------HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEE
T ss_pred             cchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEeccc-------HHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCce
Confidence            455565 7799999999999976  4567888888531       3466788887 55689999999999876    567


Q ss_pred             eEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        174 LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .++||||+++|+|.+++.......+++..++.++.|++.||.|||+.+  |+||||||+|||++
T Consensus        90 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~--i~H~dlkp~Nil~~  151 (299)
T 3m2w_A           90 LLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSIN--IAHRDVKPENLLYT  151 (299)
T ss_dssp             EEEEECCCCSCBHHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEES
T ss_pred             EEEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCC--cccCCCCHHHEEEe
Confidence            999999999999999999876557999999999999999999999999  99999999999997

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=99.92  E-value=2.6e-25  Score=178.69  Aligned_cols=130  Identities=16%  Similarity=0.227  Sum_probs=113.6

Q ss_pred             CCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCC------
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP------  172 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~------  172 (239)
                      ...|.+.+.||+|+||.||+|..  .+..+++|++..........+.+.+|+.+++.++||||+++++++...+      
T Consensus        24 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~  103 (371)
T 2xrw_A           24 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQ  103 (371)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCC
T ss_pred             hhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeecccccccccc
Confidence            36788999999999999999975  4677888988765445555677889999999999999999999997654      


Q ss_pred             ceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        173 DLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       173 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ..++||||+++ +|.+++..    .+++..+..++.|++.||.|||+.|  |+||||||+|||++
T Consensus       104 ~~~lv~e~~~~-~l~~~~~~----~~~~~~~~~i~~qi~~al~~lH~~~--ivH~Dlkp~NIl~~  161 (371)
T 2xrw_A          104 DVYIVMELMDA-NLCQVIQM----ELDHERMSYLLYQMLCGIKHLHSAG--IIHRDLKPSNIVVK  161 (371)
T ss_dssp             EEEEEEECCSE-EHHHHHHS----CCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEEC
T ss_pred             ceEEEEEcCCC-CHHHHHhh----ccCHHHHHHHHHHHHHHHHHHHHCC--eecccCCHHHEEEc
Confidence            68999999975 89988864    4889999999999999999999999  99999999999986

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=99.92  E-value=1.8e-25  Score=174.95  Aligned_cols=133  Identities=17%  Similarity=0.266  Sum_probs=111.7

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccC--CchHHHHHHHHHhHhhhcCCCceeeeeeeee--CCCceE
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNC--TPRVSRDFNEEFPKLRIFSHPNVLPVIGCVN--SPPDLV  175 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~--~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~--~~~~~~  175 (239)
                      .+|.+.+.||+|+||.||++..  .+..+++|++.....  .......+.+|+.+++.++||||+++++++.  .....+
T Consensus         5 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~   84 (305)
T 2wtk_C            5 GKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKMY   84 (305)
T ss_dssp             CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---CEE
T ss_pred             cceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCeEE
Confidence            5688999999999999999987  346778888865421  1234567899999999999999999999984  455899


Q ss_pred             EEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        176 VISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       176 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +||||++++ |.+++.......+++..+..++.|++.||.|||+.+  |+||||||+|||++
T Consensus        85 lv~e~~~~~-l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~--i~H~dlkp~NIl~~  143 (305)
T 2wtk_C           85 MVMEYCVCG-MQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLHSQG--IVHKDIKPGNLLLT  143 (305)
T ss_dssp             EEEECCSEE-HHHHHHHSTTCSCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEEC
T ss_pred             EEehhccCC-HHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHHCC--eeecCCCcccEEEc
Confidence            999999875 888887655557999999999999999999999999  99999999999986

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=99.92  E-value=2.6e-25  Score=172.81  Aligned_cols=136  Identities=27%  Similarity=0.445  Sum_probs=108.7

Q ss_pred             CCCCCCCcccccccCCCCCCceeeccC--C-C--ceeeeeeeeccC-CchHHHHHHHHHhHhhhcCCCceeeeeeeeeCC
Q psy12580         98 GISLNDLSLHTKISSGPNGDTWRGRWQ--K-N--DIVAKILAVRNC-TPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSP  171 (239)
Q Consensus        98 ~~~~~~~~~~~~ig~g~~g~v~~~~~~--~-~--~~~vk~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~  171 (239)
                      .+...+|.+.+.||+|+||.||+|.+.  + .  .+++|++..... .....+.+.+|+.++..++||||+++++++..+
T Consensus        14 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~   93 (291)
T 1u46_A           14 LIGEKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTP   93 (291)
T ss_dssp             ECCGGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             ccchhHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccC
Confidence            345678999999999999999999862  2 2  367787765432 234557889999999999999999999999876


Q ss_pred             CceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        172 PDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       172 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      . .++|+||+++|+|.+++.... ..+++..+..++.|++.||.|||+.+  |+||||||+|||++
T Consensus        94 ~-~~~v~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~--i~H~dikp~Nili~  155 (291)
T 1u46_A           94 P-MKMVTELAPLGSLLDRLRKHQ-GHFLLGTLSRYAVQVAEGMGYLESKR--FIHRDLAARNLLLA  155 (291)
T ss_dssp             S-CEEEEECCTTCBHHHHHHHHG-GGSCHHHHHHHHHHHHHHHHHHHHTT--EECSCCCGGGEEEE
T ss_pred             C-ceeeEecccCCCHHHHHHhcc-CCcCHHHHHHHHHHHHHHHHHHHhCC--cccCCCchheEEEc
Confidence            5 899999999999999998643 25899999999999999999999999  99999999999996

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=99.92  E-value=2.4e-25  Score=173.57  Aligned_cols=131  Identities=11%  Similarity=0.128  Sum_probs=114.6

Q ss_pred             CCCCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhc-CCCceeeeeeeeeCCCceE
Q psy12580         99 ISLNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIF-SHPNVLPVIGCVNSPPDLV  175 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~l~~~~~~~~~~~  175 (239)
                      +...+|.+.+.||+|+||.||+|..  .+..+++|++.....    ...+.+|+..+..+ +|++++++++++......+
T Consensus         7 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~----~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~   82 (298)
T 1csn_A            7 VVGVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSD----APQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNV   82 (298)
T ss_dssp             EETTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTT----SCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEE
T ss_pred             ccccceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCCc----cHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeE
Confidence            3456789999999999999999984  567788898754332    24577899999999 7999999999999999999


Q ss_pred             EEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        176 VISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       176 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +||||+ +++|.+++.... ..+++..+..++.|++.||.|||+.+  |+||||||+|||++
T Consensus        83 lv~e~~-~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~~--ivH~Dlkp~NIl~~  140 (298)
T 1csn_A           83 LVIDLL-GPSLEDLLDLCG-RKFSVKTVAMAAKQMLARVQSIHEKS--LVYRDIKPDNFLIG  140 (298)
T ss_dssp             EEEECC-CCBHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHTTT--EECCCCCGGGEEEC
T ss_pred             EEEEec-CCCHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHhCC--EecCCCCHHHEEec
Confidence            999999 889999998754 25999999999999999999999999  99999999999995

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=99.92  E-value=1.8e-25  Score=179.17  Aligned_cols=132  Identities=19%  Similarity=0.302  Sum_probs=115.4

Q ss_pred             CCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCC--c----hHHHHHHHHHhHhhhc-CCCceeeeeeeeeCCC
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCT--P----RVSRDFNEEFPKLRIF-SHPNVLPVIGCVNSPP  172 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~--~----~~~~~~~~e~~~l~~l-~h~~iv~l~~~~~~~~  172 (239)
                      .+|.+.+.||+|+||.||+|...  +..+++|++......  .    ...+.+.+|+.++..+ +||||+++++++....
T Consensus        94 ~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~  173 (365)
T 2y7j_A           94 QKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSYESSS  173 (365)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEBSS
T ss_pred             hhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEEEeeCC
Confidence            45778899999999999999874  678888988654321  1    1235678899999999 7999999999999999


Q ss_pred             ceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        173 DLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       173 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ..++||||+++++|.+++....  .+++..+..++.|++.||.|||+.|  |+||||||+|||++
T Consensus       174 ~~~lv~e~~~g~~L~~~l~~~~--~l~~~~~~~i~~qi~~~L~~LH~~g--i~H~Dlkp~NIl~~  234 (365)
T 2y7j_A          174 FMFLVFDLMRKGELFDYLTEKV--ALSEKETRSIMRSLLEAVSFLHANN--IVHRDLKPENILLD  234 (365)
T ss_dssp             EEEEEECCCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEEC
T ss_pred             EEEEEEEeCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCCHHHEEEC
Confidence            9999999999999999998755  6899999999999999999999999  99999999999986

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=99.92  E-value=2.5e-25  Score=176.79  Aligned_cols=126  Identities=29%  Similarity=0.546  Sum_probs=112.5

Q ss_pred             CCCcccccccCCCCCCceeeccCCCceeeeeeeeccCCchHHHHHHHHHhHhhh--cCCCceeeeeeeeeCCC----ceE
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRI--FSHPNVLPVIGCVNSPP----DLV  175 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~--l~h~~iv~l~~~~~~~~----~~~  175 (239)
                      .+|.+.+.||+|+||.||+|.+.+..+++|++...     ....+.+|..++..  ++||||+++++++....    ..+
T Consensus        42 ~~y~~~~~lg~G~~g~Vy~~~~~~~~vavK~~~~~-----~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~~~~~~~  116 (342)
T 1b6c_B           42 RTIVLQESIGKGRFGEVWRGKWRGEEVAVKIFSSR-----EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLW  116 (342)
T ss_dssp             HHCEEEEEEEEETTEEEEEEEETTEEEEEEEECGG-----GHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCCSSCCCEE
T ss_pred             ccEEEEeeecCCCCcEEEEEEEcCccEEEEEeCch-----hHHHHHHHHHHHHHhhcCCCcEEEEEeeecccCCccceeE
Confidence            56889999999999999999998888999988532     33567788888887  68999999999998776    799


Q ss_pred             EEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhh--------cCCCCcccCCCCCccceee
Q psy12580        176 VISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH--------SLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       176 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH--------~~~~~ivHrdikp~Nill~  237 (239)
                      +||||+++|+|.+++...   .+++..++.++.|++.||.|||        +.+  |+||||||+|||++
T Consensus       117 lv~e~~~~g~L~~~l~~~---~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~--ivH~Dlkp~NIll~  181 (342)
T 1b6c_B          117 LVSDYHEHGSLFDYLNRY---TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPA--IAHRDLKSKNILVK  181 (342)
T ss_dssp             EEECCCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCE--EECSCCSGGGEEEC
T ss_pred             EEEeecCCCcHHHHHhcc---CccHHHHHHHHHHHHHHHHHHHHHHhhhcccCC--eeeCCCCHHHEEEC
Confidence            999999999999999875   4899999999999999999999        888  99999999999996

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=99.92  E-value=2.4e-25  Score=174.88  Aligned_cols=136  Identities=10%  Similarity=0.132  Sum_probs=119.5

Q ss_pred             cCCCCCCCcccccccCCCCCCceeeccC-CCceeeeeeeeccCCchHHHHHHHHHhHhhhcC--CCceeeeeeeeeCCCc
Q psy12580         97 KGISLNDLSLHTKISSGPNGDTWRGRWQ-KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFS--HPNVLPVIGCVNSPPD  173 (239)
Q Consensus        97 ~~~~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~--h~~iv~l~~~~~~~~~  173 (239)
                      ..+....|.+.+.||+|+||.||++... +..+++|++..........+.+.+|+.++..++  ||||+++++++...+.
T Consensus        23 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~  102 (313)
T 3cek_A           23 MSVKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQY  102 (313)
T ss_dssp             EEETTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEECSSE
T ss_pred             eeeccceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEeecCCE
Confidence            3455677899999999999999999874 466778888766555666678899999999996  5999999999999999


Q ss_pred             eEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        174 LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .++||| +.+++|.+++....  .+++..+..++.|+++||.|||+.+  |+||||||+|||++
T Consensus       103 ~~lv~e-~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~aL~~LH~~~--ivH~dlkp~NIl~~  161 (313)
T 3cek_A          103 IYMVME-CGNIDLNSWLKKKK--SIDPWERKSYWKNMLEAVHTIHQHG--IVHSDLKPANFLIV  161 (313)
T ss_dssp             EEEEEC-CCSEEHHHHHHHCS--SCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCGGGEEEE
T ss_pred             EEEEEe-cCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCC--ceecCCCcccEEEE
Confidence            999999 55779999998866  6899999999999999999999999  99999999999985

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=99.92  E-value=2.8e-25  Score=173.38  Aligned_cols=130  Identities=16%  Similarity=0.225  Sum_probs=112.4

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeC---------
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNS---------  170 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~---------  170 (239)
                      ++|.+.+.||+|+||.||+|..  .+..+++|.+...   ....+.+.+|+.+++.++||||+++++++..         
T Consensus         6 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~   82 (303)
T 1zy4_A            6 SDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHT---EEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMT   82 (303)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEE---HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC---
T ss_pred             ccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEecc---HHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhc
Confidence            4577889999999999999986  4677888888542   3345678899999999999999999998754         


Q ss_pred             ----CCceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        171 ----PPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       171 ----~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                          .+..++||||+++|+|.+++.... ..+++..++.++.|++.||.|||+.+  |+||||||+|||++
T Consensus        83 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~LH~~~--i~H~dlkp~Nil~~  150 (303)
T 1zy4_A           83 AVKKKSTLFIQMEYCENGTLYDLIHSEN-LNQQRDEYWRLFRQILEALSYIHSQG--IIHRDLKPMNIFID  150 (303)
T ss_dssp             ---CEEEEEEEEECCCSCBHHHHHHHSC-GGGCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEEC
T ss_pred             ccccCCceEEEEecCCCCCHHHhhhccc-cccchHHHHHHHHHHHHHHHHHHhCC--eecccCCHHhEEEc
Confidence                347899999999999999998654 35889999999999999999999999  99999999999986

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=99.92  E-value=3.8e-25  Score=174.81  Aligned_cols=134  Identities=20%  Similarity=0.331  Sum_probs=115.2

Q ss_pred             CCCCCCcccccccCCCCCCceeecc------CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeee--C
Q psy12580         99 ISLNDLSLHTKISSGPNGDTWRGRW------QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVN--S  170 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g~~g~v~~~~~------~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~--~  170 (239)
                      +..++|.+.+.||+|+||.||++.+      .+..+++|.+...  .....+.+.+|+.+++.++||||+++++++.  .
T Consensus        20 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~   97 (327)
T 3lxl_A           20 FEERHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHS--GPDQQRDFQREIQILKALHSDFIVKYRGVSYGPG   97 (327)
T ss_dssp             CCGGGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSC--CHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSS
T ss_pred             hchhhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccC--CHHHHHHHHHHHHHHHhcCCCceeEEEEEEecCC
Confidence            4557889999999999999999984      3456777877543  3444567899999999999999999999886  4


Q ss_pred             CCceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        171 PPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       171 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ....++||||+++|+|.+++..... .+++..++.++.|++.||.|||+.+  |+||||||+|||++
T Consensus        98 ~~~~~lv~e~~~~~~L~~~l~~~~~-~~~~~~~~~i~~qi~~al~~lH~~~--ivH~Dikp~NIl~~  161 (327)
T 3lxl_A           98 RQSLRLVMEYLPSGCLRDFLQRHRA-RLDASRLLLYSSQICKGMEYLGSRR--CVHRDLAARNILVE  161 (327)
T ss_dssp             SCEEEEEEECCTTCBHHHHHHHHGG-GCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEEE
T ss_pred             CceEEEEEeecCCCCHHHHHHhccc-CCCHHHHHHHHHHHHHHHHHHHhCC--ccCCCCChhhEEEC
Confidence            4578999999999999999987432 5899999999999999999999999  99999999999986

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=99.92  E-value=6.8e-25  Score=187.69  Aligned_cols=137  Identities=22%  Similarity=0.375  Sum_probs=114.8

Q ss_pred             ccCCCCCCCcccccccCCCCCCceeeccCC-----CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeC
Q psy12580         96 HKGISLNDLSLHTKISSGPNGDTWRGRWQK-----NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNS  170 (239)
Q Consensus        96 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~-----~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~  170 (239)
                      ...+...+|.+.+.||+|+||.||+|.+..     ..+++|.+... ......+.+.+|+.+++.++||||+++++++. 
T Consensus       384 ~~~i~~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-  461 (656)
T 2j0j_A          384 DYEIQRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNC-TSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-  461 (656)
T ss_dssp             GTBCCGGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSST-TCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-
T ss_pred             ccccccccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEeccc-CCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-
Confidence            345666788999999999999999998732     23455655432 23444577899999999999999999999985 


Q ss_pred             CCceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        171 PPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       171 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .+..++||||+++|+|.+++.... ..+++..+..++.|++.||.|||+.+  |+||||||+|||++
T Consensus       462 ~~~~~lv~E~~~~g~L~~~l~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~g--ivHrDikp~NILl~  525 (656)
T 2j0j_A          462 ENPVWIIMELCTLGELRSFLQVRK-FSLDLASLILYAYQLSTALAYLESKR--FVHRDIAARNVLVS  525 (656)
T ss_dssp             SSSCEEEEECCTTCBHHHHHHHTT-TTCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSGGGEEEE
T ss_pred             cCceEEEEEcCCCCcHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHhCC--ccccccchHhEEEe
Confidence            456899999999999999998654 25899999999999999999999999  99999999999997

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=99.92  E-value=5.1e-26  Score=179.61  Aligned_cols=131  Identities=15%  Similarity=0.304  Sum_probs=110.7

Q ss_pred             CCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEe
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQ  179 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e  179 (239)
                      ++|.+.+.||+|+||.||+|...  +..+++|++..... ......+.+|+.+++.++||||+++++++...+..++|||
T Consensus         2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   80 (324)
T 3mtl_A            2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHE-EGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFE   80 (324)
T ss_dssp             CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC-------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEEEE
T ss_pred             CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccc-cccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEEec
Confidence            46888999999999999999874  56788888854332 1112245579999999999999999999999999999999


Q ss_pred             eCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       180 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |+++ +|.+++.... ..+++..+..++.|++.||.|||+.|  |+||||||+|||++
T Consensus        81 ~~~~-~l~~~~~~~~-~~~~~~~~~~~~~qi~~aL~~LH~~~--ivH~Dikp~NIl~~  134 (324)
T 3mtl_A           81 YLDK-DLKQYLDDCG-NIINMHNVKLFLFQLLRGLAYCHRQK--VLHRDLKPQNLLIN  134 (324)
T ss_dssp             CCSE-EHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHHTT--EEESSCCGGGEEEC
T ss_pred             cccc-CHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCC--ccCCCcCHHHEEEC
Confidence            9975 9999998755 25899999999999999999999999  99999999999986

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=99.92  E-value=1.3e-25  Score=179.95  Aligned_cols=135  Identities=11%  Similarity=0.104  Sum_probs=107.3

Q ss_pred             CCCCCCcccccccCCCCCCceeeccCC-------CceeeeeeeeccCCchHH---------HHHHHHHhHhhhcCCCcee
Q psy12580         99 ISLNDLSLHTKISSGPNGDTWRGRWQK-------NDIVAKILAVRNCTPRVS---------RDFNEEFPKLRIFSHPNVL  162 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g~~g~v~~~~~~~-------~~~~vk~~~~~~~~~~~~---------~~~~~e~~~l~~l~h~~iv  162 (239)
                      +...+|.+.+.||+|+||.||+|.+..       ..+++|++.........+         .....|+..+..++||||+
T Consensus        32 ~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv  111 (364)
T 3op5_A           32 MAAAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVP  111 (364)
T ss_dssp             TTCCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSC
T ss_pred             cCCCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCC
Confidence            445689999999999999999998743       567788875432111000         1233455566777899999


Q ss_pred             eeeeeeeCC----CceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        163 PVIGCVNSP----PDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       163 ~l~~~~~~~----~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ++++++...    ...+|||||+ +++|.+++.... ..+++..++.++.||+.||.|||+.+  |+||||||+|||++
T Consensus       112 ~~~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~~~-~~l~~~~~~~i~~qi~~~l~~lH~~~--iiHrDlkp~Nill~  186 (364)
T 3op5_A          112 KYWGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEANA-KRFSRKTVLQLSLRILDILEYIHEHE--YVHGDIKASNLLLN  186 (364)
T ss_dssp             CEEEEEEEEETTEEEEEEEEECE-EEEHHHHHHHTT-SCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEEE
T ss_pred             eEEeeeeeccCCcceEEEEEeCC-CCCHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHCC--eEEecCCHHHEEEe
Confidence            999998664    3589999999 889999998753 36999999999999999999999999  99999999999997

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=99.92  E-value=3.7e-25  Score=172.48  Aligned_cols=130  Identities=25%  Similarity=0.375  Sum_probs=109.4

Q ss_pred             CcccccccCCCCCCceeeccCC--C---ceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCce-EEE
Q psy12580        104 LSLHTKISSGPNGDTWRGRWQK--N---DIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDL-VVI  177 (239)
Q Consensus       104 ~~~~~~ig~g~~g~v~~~~~~~--~---~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~-~lv  177 (239)
                      |...+.||+|+||.||+|.+.+  .   .+++|.+.. .......+.+.+|+.+++.++||||+++++++...+.. ++|
T Consensus        23 ~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~-~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v  101 (298)
T 3pls_A           23 THSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSR-ITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPHVL  101 (298)
T ss_dssp             EEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETT-CCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEE
T ss_pred             EccCceeccCCCceEEEEEEecCCCceeeeeeeeccc-cccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcEEE
Confidence            3456889999999999998622  2   456676643 22334457788999999999999999999999776654 999


Q ss_pred             EeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        178 SQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       178 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |||+.+|+|.+++.... ..+++..+..++.|++.||.|||+.|  |+||||||+|||++
T Consensus       102 ~e~~~~~~L~~~~~~~~-~~~~~~~~~~i~~qi~~~l~~LH~~~--i~H~dikp~Nili~  158 (298)
T 3pls_A          102 LPYMCHGDLLQFIRSPQ-RNPTVKDLISFGLQVARGMEYLAEQK--FVHRDLAARNCMLD  158 (298)
T ss_dssp             ECCCTTCBHHHHHHCTT-CCCBHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSGGGEEEC
T ss_pred             EecccCCCHHHHHhccc-cCCCHHHHHHHHHHHHHHHHHHHhCC--cccCCCCcceEEEc
Confidence            99999999999998744 36899999999999999999999999  99999999999986

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=99.92  E-value=1.7e-25  Score=178.04  Aligned_cols=135  Identities=12%  Similarity=0.095  Sum_probs=106.6

Q ss_pred             CCCCCCCcccccccCCCCCCceeeccC-----CCceeeeeeeeccCCchH---------HHHHHHHHhHhhhcCCCceee
Q psy12580         98 GISLNDLSLHTKISSGPNGDTWRGRWQ-----KNDIVAKILAVRNCTPRV---------SRDFNEEFPKLRIFSHPNVLP  163 (239)
Q Consensus        98 ~~~~~~~~~~~~ig~g~~g~v~~~~~~-----~~~~~vk~~~~~~~~~~~---------~~~~~~e~~~l~~l~h~~iv~  163 (239)
                      .+...+|.+.+.||+|+||.||+|...     +..+++|+..........         ...+.+|+..+..++||||++
T Consensus        33 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~  112 (345)
T 2v62_A           33 DMEGNQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPL  112 (345)
T ss_dssp             CTTSCEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCC
T ss_pred             cccCceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcce
Confidence            345578999999999999999999873     356777777543221110         123567788888999999999


Q ss_pred             eeeeeeC----CCceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        164 VIGCVNS----PPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       164 l~~~~~~----~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +++++..    ....++||||+ +++|.+++....  .+++..++.++.|++.||+|||+.+  |+||||||+|||++
T Consensus       113 ~~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~--~~~~~~~~~i~~qi~~aL~~LH~~~--ivH~Dlkp~NIll~  185 (345)
T 2v62_A          113 FYGSGLTEFKGRSYRFMVMERL-GIDLQKISGQNG--TFKKSTVLQLGIRMLDVLEYIHENE--YVHGDIKAANLLLG  185 (345)
T ss_dssp             EEEEEEEESSSCEEEEEEEECE-EEEHHHHCBGGG--BCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEEE
T ss_pred             eecccccccCCCcEEEEEEecc-CCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCC--eeCCCcCHHHEEEc
Confidence            9999877    66899999999 889999998765  6999999999999999999999999  99999999999996

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=99.92  E-value=5.9e-25  Score=173.83  Aligned_cols=126  Identities=15%  Similarity=0.265  Sum_probs=111.1

Q ss_pred             CCCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcC-CCceeeeeeeeeC--CCce
Q psy12580        100 SLNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFS-HPNVLPVIGCVNS--PPDL  174 (239)
Q Consensus       100 ~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~-h~~iv~l~~~~~~--~~~~  174 (239)
                      ..++|.+.+.||+|+||.||+|..  .+..+++|++...     ..+.+.+|+.+++.+. ||||+++++++..  ....
T Consensus        34 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-----~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~  108 (330)
T 3nsz_A           34 NQDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPV-----KKKKIKREIKILENLRGGPNIITLADIVKDPVSRTP  108 (330)
T ss_dssp             EGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC-----CHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCE
T ss_pred             CCCceEEEEEecccCCeEEEEEEECCCCcEEEEEEeccc-----chHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCce
Confidence            347789999999999999999975  5677888887532     2366889999999996 9999999999987  5578


Q ss_pred             EEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        175 VVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       175 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ++||||+++++|.++++.     +++..+..++.|++.||.|||+.|  |+||||||+|||++
T Consensus       109 ~lv~e~~~~~~l~~~~~~-----~~~~~~~~~~~qi~~~l~~lH~~~--ivH~Dikp~Nil~~  164 (330)
T 3nsz_A          109 ALVFEHVNNTDFKQLYQT-----LTDYDIRFYMYEILKALDYCHSMG--IMHRDVKPHNVMID  164 (330)
T ss_dssp             EEEEECCCCCCHHHHGGG-----CCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEEE
T ss_pred             EEEEeccCchhHHHHHHh-----CCHHHHHHHHHHHHHHHHHHHhCC--eeeCCCCHHHEEEc
Confidence            999999999999999853     789999999999999999999999  99999999999996

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=99.92  E-value=6.8e-25  Score=172.31  Aligned_cols=132  Identities=13%  Similarity=0.248  Sum_probs=109.7

Q ss_pred             CCCCCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEE
Q psy12580         99 ISLNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVV  176 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~l  176 (239)
                      ...+.|.+.+.||+|+||.||+|...  +..+++|.+.....    .+.+.+|+.++..++||||+++++++...+..++
T Consensus        26 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~----~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l  101 (314)
T 3com_A           26 QPEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVESD----LQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWI  101 (314)
T ss_dssp             ----CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTSC----CHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEE
T ss_pred             cchhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchHH----HHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEE
Confidence            34567889999999999999999874  56788888865322    2567889999999999999999999999999999


Q ss_pred             EEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        177 ISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       177 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||||+++|+|.+++.... ..+++..+..++.|++.||.|||+.+  |+|+||||+||+++
T Consensus       102 v~e~~~~~~L~~~~~~~~-~~~~~~~~~~i~~~i~~~l~~lH~~~--i~H~dl~p~Nil~~  159 (314)
T 3com_A          102 VMEYCGAGSVSDIIRLRN-KTLTEDEIATILQSTLKGLEYLHFMR--KIHRDIKAGNILLN  159 (314)
T ss_dssp             EEECCTTEEHHHHHHHHT-CCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEEC
T ss_pred             EeecCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHhCC--CcCCCcCHHHEEEC
Confidence            999999999999997432 26899999999999999999999999  99999999999986

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=99.92  E-value=2.7e-25  Score=176.99  Aligned_cols=133  Identities=14%  Similarity=0.286  Sum_probs=108.9

Q ss_pred             CCCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCc---hHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceE
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTP---RVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLV  175 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~---~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~  175 (239)
                      ...|.+.+.||+|+||.||+|...  +..+++|.+.......   ...+.+.+|+.+++.++||||+++++++...+..+
T Consensus         9 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   88 (346)
T 1ua2_A            9 AKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNIS   88 (346)
T ss_dssp             ----CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCE
T ss_pred             hcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCCceE
Confidence            467889999999999999999874  5678888886532221   11246789999999999999999999999999999


Q ss_pred             EEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        176 VISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       176 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +||||+++ +|.+++.... ..+++..+..++.|+++||.|||+.+  |+||||||+|||++
T Consensus        89 lv~e~~~~-~l~~~~~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~--ivH~Dlkp~Nil~~  146 (346)
T 1ua2_A           89 LVFDFMET-DLEVIIKDNS-LVLTPSHIKAYMLMTLQGLEYLHQHW--ILHRDLKPNNLLLD  146 (346)
T ss_dssp             EEEECCSE-EHHHHHTTCC-SSCCSSHHHHHHHHHHHHHHHHHHTT--CCCCCCCGGGEEEC
T ss_pred             EEEEcCCC-CHHHHHHhcC-cCCCHHHHHHHHHHHHHHHHHHHHCC--EECCCCCHHHEEEc
Confidence            99999986 8999987754 35889999999999999999999999  99999999999986

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=99.92  E-value=1.1e-24  Score=169.63  Aligned_cols=133  Identities=20%  Similarity=0.310  Sum_probs=112.4

Q ss_pred             CCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEE
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVIS  178 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~  178 (239)
                      ..++.....||+|+||.||+|..  .+..+++|.+....  ....+.+.+|+.+++.++||||+++++++...+..++||
T Consensus        21 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~   98 (295)
T 2clq_A           21 YDENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERD--SRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFM   98 (295)
T ss_dssp             BCTTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCC--C---HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             ccCCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCc--hHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEE
Confidence            34455566899999999999987  34567778776442  334467889999999999999999999999999999999


Q ss_pred             eeCCCCCHHHHhhcCCC-cccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        179 QYMAWGSLYALLHEGAG-IVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       179 e~~~~gsL~~~l~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||+++++|.+++....+ ..+++..+..++.|++.||.|||+.+  |+||||||+|||++
T Consensus        99 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~--i~H~dl~p~Nil~~  156 (295)
T 2clq_A           99 EQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDNQ--IVHRDIKGDNVLIN  156 (295)
T ss_dssp             ECCSEEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEEE
T ss_pred             EeCCCCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHhCC--EEccCCChhhEEEE
Confidence            99999999999987532 24678999999999999999999999  99999999999996

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=99.92  E-value=1.3e-25  Score=179.28  Aligned_cols=128  Identities=16%  Similarity=0.112  Sum_probs=109.9

Q ss_pred             CCCCCcccccccCCCCCCceeeccC----------CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceee------
Q psy12580        100 SLNDLSLHTKISSGPNGDTWRGRWQ----------KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLP------  163 (239)
Q Consensus       100 ~~~~~~~~~~ig~g~~g~v~~~~~~----------~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~------  163 (239)
                      ...+|.+.+.||+|+||.||+|...          +..+++|++...       ..+.+|+.+++.++||||++      
T Consensus        40 ~~~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~-------~~~~~E~~~l~~l~h~niv~~~~~~~  112 (352)
T 2jii_A           40 SGRQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD-------GRLFNEQNFFQRAAKPLQVNKWKKLY  112 (352)
T ss_dssp             TSCEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT-------STHHHHHHHHHHHCCHHHHHHHHHHT
T ss_pred             cCCeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc-------chHHHHHHHHHHhcccchhhhhhhhc
Confidence            4578999999999999999999874          467888887543       35778999999999999887      


Q ss_pred             ---------eeeeeeC-CCceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCcc
Q psy12580        164 ---------VIGCVNS-PPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRH  233 (239)
Q Consensus       164 ---------l~~~~~~-~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~N  233 (239)
                               +++++.. ....++||||+ +++|.+++.......+++..++.++.|++.||.|||+.+  |+||||||+|
T Consensus       113 ~~~~~~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~--ivH~Dikp~N  189 (352)
T 2jii_A          113 STPLLAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVSPKHVLSERSVLQVACRLLDALEFLHENE--YVHGNVTAEN  189 (352)
T ss_dssp             TCTTCSCCCCCEEEEETTTEEEEEEECC-CEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHTT--CBCSCCCGGG
T ss_pred             cCCccCccchhhccccCCcEEEEEecCC-CcCHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHHhCC--ccCCCCCHHH
Confidence                     5666655 66899999999 889999999864347999999999999999999999999  9999999999


Q ss_pred             ceee
Q psy12580        234 VMVY  237 (239)
Q Consensus       234 ill~  237 (239)
                      ||++
T Consensus       190 Il~~  193 (352)
T 2jii_A          190 IFVD  193 (352)
T ss_dssp             EEEE
T ss_pred             EEEc
Confidence            9997

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=99.92  E-value=5.4e-25  Score=176.84  Aligned_cols=129  Identities=15%  Similarity=0.226  Sum_probs=113.3

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCce-----
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDL-----  174 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~-----  174 (239)
                      ..|...+.||+|+||.||+|..  .+..+++|++..........+.+.+|+.+++.++||||+++++++...+..     
T Consensus        42 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~  121 (371)
T 4exu_A           42 KTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFYD  121 (371)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCCC
T ss_pred             ccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCccccee
Confidence            6788899999999999999976  467788898876555555567889999999999999999999999877654     


Q ss_pred             -EEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        175 -VVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       175 -~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                       ++||||+. ++|.+++..    .+++..+..++.|++.||.|||+.|  |+||||||+|||++
T Consensus       122 ~~lv~e~~~-~~l~~~~~~----~~~~~~~~~i~~qi~~aL~~LH~~~--ivH~Dikp~NIll~  178 (371)
T 4exu_A          122 FYLVMPFMQ-TDLQKIMGM----EFSEEKIQYLVYQMLKGLKYIHSAG--VVHRDLKPGNLAVN  178 (371)
T ss_dssp             CEEEEECCC-EEHHHHTTS----CCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEEC
T ss_pred             EEEEEcccc-ccHHHHhhc----CCCHHHHHHHHHHHHHHHHHHHHCC--CcCCCcCHHHeEEC
Confidence             99999997 599888843    4899999999999999999999999  99999999999986

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=99.92  E-value=4.5e-25  Score=176.71  Aligned_cols=134  Identities=19%  Similarity=0.259  Sum_probs=112.9

Q ss_pred             CCCCCcccccccCCCCCCceeecc-CCCceeeeeeeeccCC---------chHHHHHHHHHhHhhhcCCCceeeeeeeee
Q psy12580        100 SLNDLSLHTKISSGPNGDTWRGRW-QKNDIVAKILAVRNCT---------PRVSRDFNEEFPKLRIFSHPNVLPVIGCVN  169 (239)
Q Consensus       100 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~vk~~~~~~~~---------~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~  169 (239)
                      ....|.+.+.||+|+||.||+|.. .+..+++|.+......         ....+.+.+|+.+++.++||||+++++++.
T Consensus        20 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~   99 (362)
T 3pg1_A           20 MQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNILGLRDIFV   99 (362)
T ss_dssp             TTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEEE
T ss_pred             hccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCccceeeeEE
Confidence            346789999999999999999976 4567888888554322         122367899999999999999999999884


Q ss_pred             C-----CCceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        170 S-----PPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       170 ~-----~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .     ....++||||++ |+|.+++.... ..+++..+..++.|++.||.|||+.+  |+||||||+|||++
T Consensus       100 ~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~--ivH~Dlkp~NIl~~  168 (362)
T 3pg1_A          100 HFEEPAMHKLYLVTELMR-TDLAQVIHDQR-IVISPQHIQYFMYHILLGLHVLHEAG--VVHRDLHPGNILLA  168 (362)
T ss_dssp             ECCTTTCCEEEEEEECCS-EEHHHHHHCTT-SCCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCGGGEEEC
T ss_pred             eccCCCcceEEEEEccCC-CCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHHCc--CEecCCChHHEEEc
Confidence            3     336899999997 59999988654 35899999999999999999999999  99999999999996

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=99.92  E-value=6.3e-25  Score=173.96  Aligned_cols=138  Identities=13%  Similarity=0.220  Sum_probs=114.5

Q ss_pred             cCCCCCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcC-CCceeeeeeeee----
Q psy12580         97 KGISLNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFS-HPNVLPVIGCVN----  169 (239)
Q Consensus        97 ~~~~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~-h~~iv~l~~~~~----  169 (239)
                      ..+....|.+.+.||+|+||.||+|.+  .+..+++|.+...  .....+.+.+|+.++..+. ||||+++++++.    
T Consensus        23 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~  100 (337)
T 3ll6_A           23 VELGELRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSN--EEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKE  100 (337)
T ss_dssp             EEETTEEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEES--SHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTT
T ss_pred             eeccCceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCC--chHHHHHHHHHHHHHHHhccCCChhhcccccccccc
Confidence            344556788999999999999999987  5577888887543  3444567889999999995 999999999983    


Q ss_pred             ----CCCceEEEEeeCCCCCHHHHhhc-CCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        170 ----SPPDLVVISQYMAWGSLYALLHE-GAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       170 ----~~~~~~lv~e~~~~gsL~~~l~~-~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                          ....+++||||+. |+|.+++.. .....+++..++.++.|++.||.|||+.+++|+||||||+|||++
T Consensus       101 ~~~~~~~~~~lv~e~~~-g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~~~ivH~Dikp~NIl~~  172 (337)
T 3ll6_A          101 ESDTGQAEFLLLTELCK-GQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHRQKPPIIHRDLKVENLLLS  172 (337)
T ss_dssp             TSTTSSEEEEEEEECCS-EEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHTSSSCCBCCCCCGGGCEEC
T ss_pred             ccccCCceEEEEEEecC-CCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCEEEccCCcccEEEC
Confidence                3336899999996 699999875 112259999999999999999999999877799999999999986

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=99.92  E-value=3.4e-25  Score=174.87  Aligned_cols=133  Identities=19%  Similarity=0.272  Sum_probs=111.2

Q ss_pred             CCCcccccccCCCCCCceeecc---CCCceeeeeeeeccCCchHHHHHHHHHhHhhhc---CCCceeeeeeeee-----C
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW---QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIF---SHPNVLPVIGCVN-----S  170 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~---~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l---~h~~iv~l~~~~~-----~  170 (239)
                      .+|.+.+.||+|+||.||+|..   .+..+++|++............+.+|+.+++.+   .||||+++++++.     .
T Consensus        11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~   90 (326)
T 1blx_A           11 QQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDR   90 (326)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEECSS
T ss_pred             hceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeecccCC
Confidence            6788999999999999999986   245677888866543332234566777777666   8999999999986     4


Q ss_pred             CCceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        171 PPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       171 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ....++||||++ |+|.+++.......+++..+..++.|++.||.|||+.|  |+||||||+|||++
T Consensus        91 ~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~g--i~H~dlkp~Nili~  154 (326)
T 1blx_A           91 ETKLTLVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHR--VVHRDLKPQNILVT  154 (326)
T ss_dssp             EEEEEEEEECCS-CBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCGGGEEEC
T ss_pred             CceEEEEEecCC-CCHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHCC--ceeccCCHHHeEEc
Confidence            558999999997 59999998765456999999999999999999999999  99999999999986

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.92  E-value=2.2e-25  Score=191.95  Aligned_cols=130  Identities=16%  Similarity=0.207  Sum_probs=110.3

Q ss_pred             CCCCcccccccCCCCCCceeecc---CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCc----
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRW---QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPD----  173 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~---~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~----  173 (239)
                      ...|.+.+.||+|+||.||+|.+   .+..+++|.+... ........+.+|+.++.+++||||+++++++...+.    
T Consensus        79 ~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~-~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~  157 (681)
T 2pzi_A           79 AGQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHS-GDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDP  157 (681)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSS-CCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCE
T ss_pred             CCceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCcc-CCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCc
Confidence            36789999999999999999986   3567788877543 234455678899999999999999999999977665    


Q ss_pred             -eEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        174 -LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 -~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                       .+|||||+++++|.+++..    .+++..++.++.||+.||.|||+.|  ||||||||+|||++
T Consensus       158 ~~~lv~E~~~g~~L~~~~~~----~l~~~~~~~~~~qi~~aL~~lH~~g--iiHrDlkp~NIll~  216 (681)
T 2pzi_A          158 VGYIVMEYVGGQSLKRSKGQ----KLPVAEAIAYLLEILPALSYLHSIG--LVYNDLKPENIMLT  216 (681)
T ss_dssp             EEEEEEECCCCEECC----C----CCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEEC
T ss_pred             eeEEEEEeCCCCcHHHHHhC----CCCHHHHHHHHHHHHHHHHHHHHCC--CeecccChHHeEEe
Confidence             7999999999999988765    5899999999999999999999999  99999999999986

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=99.92  E-value=2e-24  Score=169.87  Aligned_cols=128  Identities=17%  Similarity=0.314  Sum_probs=106.2

Q ss_pred             CCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeee----------
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVN----------  169 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~----------  169 (239)
                      ..|...+.||+|+||.||+|...  +..+++|.+...  .....+.+.+|+.+++.++||||+++++++.          
T Consensus        11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~   88 (320)
T 2i6l_A           11 SRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLT--DPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDV   88 (320)
T ss_dssp             TTEEEEEECC-----CEEEEEETTTTEEEEEEEEECC--SHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC--
T ss_pred             CceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecC--ChHHHHHHHHHHHHHHhcCCCCeeEEEEecccccccccccc
Confidence            56888999999999999999874  567788887543  3445577889999999999999999999874          


Q ss_pred             ----CCCceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        170 ----SPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       170 ----~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                          .....++||||++ |+|.+++...   .+++..++.++.|++.||+|||+.|  |+||||||+|||++
T Consensus        89 ~~~~~~~~~~lv~e~~~-~~L~~~~~~~---~~~~~~~~~~~~qi~~~l~~lH~~~--i~H~dlkp~Nil~~  154 (320)
T 2i6l_A           89 GSLTELNSVYIVQEYME-TDLANVLEQG---PLLEEHARLFMYQLLRGLKYIHSAN--VLHRDLKPANLFIN  154 (320)
T ss_dssp             --CCSCSEEEEEEECCS-EEHHHHHTTC---CCCHHHHHHHHHHHHHHHHHHHHTT--CBCCCCSGGGEEEE
T ss_pred             ccccccCceeEEeeccC-CCHHHHhhcC---CccHHHHHHHHHHHHHHHHHHHhCC--EecCCCCHHHEEEc
Confidence                3357899999997 5999999764   4899999999999999999999999  99999999999996

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=99.92  E-value=1.1e-24  Score=174.66  Aligned_cols=129  Identities=18%  Similarity=0.276  Sum_probs=111.8

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCC-----Cce
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSP-----PDL  174 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~-----~~~  174 (239)
                      ..|.+.+.||+|+||.||+|..  .+..+++|++... ......+.+.+|+.++..++||||+++++++...     ...
T Consensus        27 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~  105 (364)
T 3qyz_A           27 PRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPF-EHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDV  105 (364)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCT-TCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCE
T ss_pred             ccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccc-cCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccceE
Confidence            5789999999999999999976  4566788887642 2334457788999999999999999999998654     368


Q ss_pred             EEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        175 VVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       175 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ++||||+++ +|.++++...   +++..+..++.|++.||.|||+.|  |+||||||+|||++
T Consensus       106 ~iv~e~~~~-~L~~~l~~~~---~~~~~~~~i~~qi~~aL~~LH~~~--ivH~Dikp~NIl~~  162 (364)
T 3qyz_A          106 YIVQDLMET-DLYKLLKTQH---LSNDHICYFLYQILRGLKYIHSAN--VLHRDLKPSNLLLN  162 (364)
T ss_dssp             EEEEECCSE-EHHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEEC
T ss_pred             EEEEcccCc-CHHHHHHhCC---CCHHHHHHHHHHHHHHHHHHHHCC--eecCCCChHhEEEC
Confidence            999999975 9999998754   899999999999999999999999  99999999999986

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=99.92  E-value=8.3e-25  Score=176.48  Aligned_cols=130  Identities=18%  Similarity=0.253  Sum_probs=105.9

Q ss_pred             CCCCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCC-----
Q psy12580         99 ISLNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSP-----  171 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~-----  171 (239)
                      ....+|.+.+.||+|+||.||+|..  .+..+|+|.+.....      ...+|+.+++.++||||+++++++...     
T Consensus         4 ~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~~------~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~   77 (383)
T 3eb0_A            4 TSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPR------YKNRELDIMKVLDHVNIIKLVDYFYTTGDEEP   77 (383)
T ss_dssp             --CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCTT------SCCHHHHHHTTCCCTTBCCEEEEEEEC-----
T ss_pred             cccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCcc------hHHHHHHHHHHcCCCCccchhheeeecCcccc
Confidence            3456789999999999999999976  567788888754322      234799999999999999999988432     


Q ss_pred             ---------------------------------CceEEEEeeCCCCCHHHHhhc--CCCcccCHHHHHHHHHHHHHHhhh
Q psy12580        172 ---------------------------------PDLVVISQYMAWGSLYALLHE--GAGIVVDFAQALRFAVDVARGMAF  216 (239)
Q Consensus       172 ---------------------------------~~~~lv~e~~~~gsL~~~l~~--~~~~~~~~~~~~~~~~~i~~~l~~  216 (239)
                                                       ...++||||+++ +|.+.+..  ..+..+++..++.++.|++.||.|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~-~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~  156 (383)
T 3eb0_A           78 KPPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVPD-TLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGF  156 (383)
T ss_dssp             --------------------------------CCEEEEEECCCSE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccCCCceEEEEEEecCCc-cHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence                                             348899999985 88887764  222369999999999999999999


Q ss_pred             hhcCCCCcccCCCCCccceee
Q psy12580        217 LHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       217 lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||+.|  |+||||||+|||++
T Consensus       157 LH~~g--i~H~Dikp~Nil~~  175 (383)
T 3eb0_A          157 IHSLG--ICHRDIKPQNLLVN  175 (383)
T ss_dssp             HHTTT--EECSCCCGGGEEEE
T ss_pred             HHHCc--CccCccCHHHEEEc
Confidence            99999  99999999999996

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=99.91  E-value=1.2e-24  Score=173.54  Aligned_cols=130  Identities=15%  Similarity=0.247  Sum_probs=112.5

Q ss_pred             CCCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCC-----Cc
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSP-----PD  173 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~-----~~  173 (239)
                      .++|.+.+.||+|+||.||+|...  +..+++|.+... ........+.+|+.+++.++||||+++++++...     ..
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   88 (353)
T 2b9h_A           10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPF-DKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNE   88 (353)
T ss_dssp             CTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCC-SSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCC
T ss_pred             ccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeeccc-ccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccce
Confidence            367889999999999999999874  567788888532 2334456788999999999999999999988654     57


Q ss_pred             eEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        174 LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .++||||+. |+|.+++...   .+++..+..++.|++.||.|||+.|  |+||||||+|||++
T Consensus        89 ~~lv~e~~~-~~L~~~~~~~---~~~~~~~~~~~~qi~~~L~~LH~~~--ivH~Dlkp~Nil~~  146 (353)
T 2b9h_A           89 VYIIQELMQ-TDLHRVISTQ---MLSDDHIQYFIYQTLRAVKVLHGSN--VIHRDLKPSNLLIN  146 (353)
T ss_dssp             EEEEECCCS-EEHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCCGGGEEEC
T ss_pred             EEEEEeccC-ccHHHHHhhc---CCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCCHHHeEEc
Confidence            899999997 5999999874   4899999999999999999999999  99999999999986

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=99.91  E-value=6.2e-25  Score=177.80  Aligned_cols=131  Identities=11%  Similarity=0.167  Sum_probs=110.7

Q ss_pred             CCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcC--------CCceeeeeeeee-
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFS--------HPNVLPVIGCVN-  169 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~--------h~~iv~l~~~~~-  169 (239)
                      ...|.+.+.||+|+||.||+|..  .+..+++|++...   ....+.+.+|+.+++.++        |+||+++++++. 
T Consensus        36 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~  112 (397)
T 1wak_A           36 NGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSA---EHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKI  112 (397)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC---HHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEE
T ss_pred             CCeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecC---CcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceee
Confidence            46789999999999999999975  4567788888532   334567889999999885        778999999887 


Q ss_pred             ---CCCceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcC-CCCcccCCCCCccceee
Q psy12580        170 ---SPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSL-ERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       170 ---~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~-~~~ivHrdikp~Nill~  237 (239)
                         .....++||||+ +++|.+++.......+++..++.++.||+.||.|||+. |  |+||||||+|||++
T Consensus       113 ~~~~~~~~~lv~e~~-~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~g--ivHrDikp~NIll~  181 (397)
T 1wak_A          113 SGVNGTHICMVFEVL-GHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLHTKCR--IIHTDIKPENILLS  181 (397)
T ss_dssp             EETTEEEEEEEECCC-CCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTC--EECCCCSGGGEEEC
T ss_pred             cCCCCceEEEEEecc-CccHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHhCC--EecCCCCHHHeeEe
Confidence               555899999999 55777777765444699999999999999999999998 9  99999999999997

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=99.91  E-value=7.9e-25  Score=174.75  Aligned_cols=129  Identities=14%  Similarity=0.219  Sum_probs=112.2

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCc------
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPD------  173 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~------  173 (239)
                      ..|...+.||+|+||.||+|..  .+..+++|.+..........+.+.+|+.+++.++||||+++++++.....      
T Consensus        24 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~  103 (353)
T 3coi_A           24 KTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFYD  103 (353)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCCC
T ss_pred             ceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEeccccccccee
Confidence            5688899999999999999976  46778889886655455556778899999999999999999999987654      


Q ss_pred             eEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        174 LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .++||||++ |+|.+++..    .+++..+..++.|++.||.|||+.|  |+||||||+|||++
T Consensus       104 ~~lv~e~~~-~~l~~~~~~----~~~~~~~~~i~~qi~~al~~LH~~~--ivH~dlkp~NIl~~  160 (353)
T 3coi_A          104 FYLVMPFMQ-TDLQKIMGL----KFSEEKIQYLVYQMLKGLKYIHSAG--VVHRDLKPGNLAVN  160 (353)
T ss_dssp             CEEEEECCS-EEGGGTTTS----CCCHHHHHHHHHHHHHHHHHHHHTT--CCCSSCCGGGEEEC
T ss_pred             EEEEecccc-CCHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCCHHHEeEC
Confidence            499999997 588887753    4899999999999999999999999  99999999999986

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.91  E-value=1.3e-24  Score=182.88  Aligned_cols=121  Identities=17%  Similarity=0.121  Sum_probs=94.5

Q ss_pred             ccCCCCCCceeec--cCCCceeeeeeeeccCC--------chHHHHHHHHHhHhhhc-CCCceeeeeeeeeCCCceEEEE
Q psy12580        110 ISSGPNGDTWRGR--WQKNDIVAKILAVRNCT--------PRVSRDFNEEFPKLRIF-SHPNVLPVIGCVNSPPDLVVIS  178 (239)
Q Consensus       110 ig~g~~g~v~~~~--~~~~~~~vk~~~~~~~~--------~~~~~~~~~e~~~l~~l-~h~~iv~l~~~~~~~~~~~lv~  178 (239)
                      .+.|+.|....++  +-+..+++|++......        ....++|.+|+.+|+++ .|+||+++++++.+.+..||||
T Consensus       242 ~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLVM  321 (569)
T 4azs_A          242 PYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLVM  321 (569)
T ss_dssp             -C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEEE
T ss_pred             cccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEEE
Confidence            4555555444433  25677888988654211        12345699999999999 6999999999999999999999


Q ss_pred             eeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        179 QYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       179 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||++|++|.++|...+  +++..   .|+.||+.||+|+|++|  ||||||||+||||+
T Consensus       322 Eyv~G~~L~d~i~~~~--~l~~~---~I~~QIl~AL~ylH~~G--IIHRDIKPeNILL~  373 (569)
T 4azs_A          322 EKLPGRLLSDMLAAGE--EIDRE---KILGSLLRSLAALEKQG--FWHDDVRPWNVMVD  373 (569)
T ss_dssp             ECCCSEEHHHHHHTTC--CCCHH---HHHHHHHHHHHHHHHTT--CEESCCCGGGEEEC
T ss_pred             ecCCCCcHHHHHHhCC--CCCHH---HHHHHHHHHHHHHHHCC--ceeccCchHhEEEC
Confidence            9999999999999876  56664   58899999999999999  99999999999996

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=99.91  E-value=1e-24  Score=184.78  Aligned_cols=134  Identities=14%  Similarity=0.209  Sum_probs=113.8

Q ss_pred             CCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeC------CC
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNS------PP  172 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~------~~  172 (239)
                      ...|.+.+.||+|+||.||+|..  .+..+++|++... ......+.+.+|+.+++.++||||+++++++..      .+
T Consensus        13 ~grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~-~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~   91 (676)
T 3qa8_A           13 CGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQE-LSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPND   91 (676)
T ss_dssp             ----CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSC-CCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTS
T ss_pred             CCCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEeccc-CCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCC
Confidence            46789999999999999999987  4577888887543 344556778999999999999999999998765      56


Q ss_pred             ceEEEEeeCCCCCHHHHhhcCC-CcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        173 DLVVISQYMAWGSLYALLHEGA-GIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       173 ~~~lv~e~~~~gsL~~~l~~~~-~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ..++||||+++|+|.+++.... ...+++..++.++.|++.||.|||+.|  |+||||||+|||++
T Consensus        92 ~~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLHs~g--IVHrDLKP~NILl~  155 (676)
T 3qa8_A           92 LPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHENR--IIHRDLKPENIVLQ  155 (676)
T ss_dssp             SCCCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHHHTT--BCCCCCCSTTEEEE
T ss_pred             eEEEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHCC--CccCCCCHHHeEee
Confidence            7899999999999999998743 235889999999999999999999999  99999999999997

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=99.91  E-value=1.2e-24  Score=177.82  Aligned_cols=130  Identities=15%  Similarity=0.223  Sum_probs=111.8

Q ss_pred             CCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhc------CCCceeeeeeeeeCCCc
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIF------SHPNVLPVIGCVNSPPD  173 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~iv~l~~~~~~~~~  173 (239)
                      ..|.+.+.||+|+||.||+|...  +..+++|++...   ......+.+|+.+++.+      .|+||+++++++...+.
T Consensus        97 ~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~  173 (429)
T 3kvw_A           97 YRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNE---KRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNH  173 (429)
T ss_dssp             TTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSC---HHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETTE
T ss_pred             CcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCc---cchHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCCe
Confidence            56889999999999999999763  467788887532   33345677788888776      56799999999999999


Q ss_pred             eEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        174 LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .++||||+. ++|.+++.......+++..++.++.||+.||+|||+.+  ||||||||+|||++
T Consensus       174 ~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~--ivHrDlKp~NILl~  234 (429)
T 3kvw_A          174 ICMTFELLS-MNLYELIKKNKFQGFSLPLVRKFAHSILQCLDALHKNR--IIHCDLKPENILLK  234 (429)
T ss_dssp             EEEEECCCC-CBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHHT--EECSCCSGGGEEES
T ss_pred             EEEEEeccC-CCHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCCHHHeEEc
Confidence            999999996 59999998876556999999999999999999999999  99999999999996

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=99.91  E-value=7.3e-25  Score=172.71  Aligned_cols=135  Identities=13%  Similarity=0.178  Sum_probs=116.1

Q ss_pred             CCCCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCc----hHHHHHHHHHhHhhhcC--CCceeeeeeeeeC
Q psy12580         99 ISLNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTP----RVSRDFNEEFPKLRIFS--HPNVLPVIGCVNS  170 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~----~~~~~~~~e~~~l~~l~--h~~iv~l~~~~~~  170 (239)
                      ....+|.+.+.||+|+||.||+|..  .+..+++|.+.......    .....+.+|+.+++.+.  ||||+++++++..
T Consensus        40 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~~  119 (320)
T 3a99_A           40 PLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFER  119 (320)
T ss_dssp             CCTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEEC
T ss_pred             CccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEec
Confidence            4457789999999999999999976  45678889886654322    12245678999999996  5999999999999


Q ss_pred             CCceEEEEeeCCC-CCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        171 PPDLVVISQYMAW-GSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       171 ~~~~~lv~e~~~~-gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ++..++|+|++.+ ++|.+++....  .+++..++.++.|++.||.|||+.+  |+||||||+|||++
T Consensus       120 ~~~~~lv~e~~~~~~~L~~~l~~~~--~l~~~~~~~i~~qi~~~L~~LH~~~--ivH~Dlkp~NIll~  183 (320)
T 3a99_A          120 PDSFVLILERPEPVQDLFDFITERG--ALQEELARSFFWQVLEAVRHCHNCG--VLHRDIKDENILID  183 (320)
T ss_dssp             SSEEEEEEECCSSEEEHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEEE
T ss_pred             CCcEEEEEEcCCCCccHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHHCC--cEeCCCCHHHEEEe
Confidence            9999999999976 89999998755  6899999999999999999999999  99999999999997

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=99.91  E-value=1.1e-24  Score=172.69  Aligned_cols=131  Identities=12%  Similarity=0.210  Sum_probs=113.0

Q ss_pred             CCCCcccccccCCCCCCceeecc---CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCC------ceeeeeeeeeCC
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRW---QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHP------NVLPVIGCVNSP  171 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~---~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~------~iv~l~~~~~~~  171 (239)
                      ...|.+.+.||+|+||.||+|..   .+..+++|++...   ....+.+.+|+.+++.++|+      +++++++++...
T Consensus        13 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~---~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~   89 (339)
T 1z57_A           13 SARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNV---DRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHH   89 (339)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSS---HHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEET
T ss_pred             cCceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecC---CchhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccC
Confidence            46789999999999999999975   4566788887532   33446678899998888654      499999999999


Q ss_pred             CceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        172 PDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       172 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +..++||||+ +++|.+++.......+++..+..++.|++.||+|||+.+  |+||||||+|||++
T Consensus        90 ~~~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~--ivH~Dlkp~Nil~~  152 (339)
T 1z57_A           90 GHICIVFELL-GLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFLHSNK--LTHTDLKPENILFV  152 (339)
T ss_dssp             TEEEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEES
T ss_pred             CcEEEEEcCC-CCCHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHCC--CcCCCCCHHHEEEe
Confidence            9999999999 789999998876556899999999999999999999999  99999999999985

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=99.91  E-value=3.6e-25  Score=173.80  Aligned_cols=135  Identities=13%  Similarity=0.209  Sum_probs=107.5

Q ss_pred             CCCCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCc----hHHHHHHHHHhHhhhc----CCCceeeeeeee
Q psy12580         99 ISLNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTP----RVSRDFNEEFPKLRIF----SHPNVLPVIGCV  168 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~----~~~~~~~~e~~~l~~l----~h~~iv~l~~~~  168 (239)
                      ....+|.+.+.||+|+||.||+|..  .+..+++|++.......    .....+.+|+.++..+    +||||+++++++
T Consensus        28 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~~~  107 (312)
T 2iwi_A           28 AFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDWF  107 (312)
T ss_dssp             -----CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEEEC
T ss_pred             hhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEEEE
Confidence            3457799999999999999999987  45678888886543221    1224466788888888    899999999999


Q ss_pred             eCCCceEEEEee-CCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        169 NSPPDLVVISQY-MAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       169 ~~~~~~~lv~e~-~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ...+..++|+|+ +.+++|.+++....  .+++..++.++.|++.||.|||+.+  |+||||||+|||++
T Consensus       108 ~~~~~~~~v~e~~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~--i~H~dlkp~Nil~~  173 (312)
T 2iwi_A          108 ETQEGFMLVLERPLPAQDLFDYITEKG--PLGEGPSRCFFGQVVAAIQHCHSRG--VVHRDIKDENILID  173 (312)
T ss_dssp             -----CEEEEECCSSEEEHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHHT--EECCCCSGGGEEEE
T ss_pred             ecCCeEEEEEEecCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCC--eeecCCChhhEEEe
Confidence            988999999999 78999999998755  6899999999999999999999999  99999999999997

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=99.91  E-value=2.3e-24  Score=170.31  Aligned_cols=138  Identities=12%  Similarity=0.133  Sum_probs=113.8

Q ss_pred             ccCCCCCCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHh-HhhhcCCCceeeeeeeeeCCC
Q psy12580         96 HKGISLNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFP-KLRIFSHPNVLPVIGCVNSPP  172 (239)
Q Consensus        96 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~-~l~~l~h~~iv~l~~~~~~~~  172 (239)
                      .+.+..++|...+.||+|+||.||+|...  +..+++|.+.... .......+..|.. +++.++||||+++++++...+
T Consensus        16 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~   94 (327)
T 3aln_A           16 HWDFTAEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTV-DEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREG   94 (327)
T ss_dssp             EECCCSCSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCC-CHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSS
T ss_pred             hcccCHHHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeeccc-CchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCC
Confidence            45567788999999999999999999874  6678888886543 2333445556665 667789999999999999999


Q ss_pred             ceEEEEeeCCCCCHHHHhhc---CCCcccCHHHHHHHHHHHHHHhhhhhcC-CCCcccCCCCCccceee
Q psy12580        173 DLVVISQYMAWGSLYALLHE---GAGIVVDFAQALRFAVDVARGMAFLHSL-ERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       173 ~~~lv~e~~~~gsL~~~l~~---~~~~~~~~~~~~~~~~~i~~~l~~lH~~-~~~ivHrdikp~Nill~  237 (239)
                      ..++||||+++ +|.+++..   .....+++..+..++.|++.||.|||+. +  |+||||||+|||++
T Consensus        95 ~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~--ivH~dlkp~NIll~  160 (327)
T 3aln_A           95 DCWICMELMST-SFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKENLK--IIHRDIKPSNILLD  160 (327)
T ss_dssp             EEEEEECCCSE-EHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHS--CCCSCCCGGGEEEE
T ss_pred             ceEEEEeecCC-ChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHhccCC--EeECCCCHHHEEEc
Confidence            99999999986 88888763   2223689999999999999999999998 9  99999999999996

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=99.91  E-value=3.8e-24  Score=173.81  Aligned_cols=123  Identities=15%  Similarity=0.287  Sum_probs=97.6

Q ss_pred             cccccCCCCCCceeeccC----CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeee--CCCceEEEEee
Q psy12580        107 HTKISSGPNGDTWRGRWQ----KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVN--SPPDLVVISQY  180 (239)
Q Consensus       107 ~~~ig~g~~g~v~~~~~~----~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~--~~~~~~lv~e~  180 (239)
                      .++||+|+||.||+|.+.    +..+++|.+......    ..+.+|+.+++.++||||+++++++.  .....++||||
T Consensus        26 g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~~~----~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~lv~e~  101 (405)
T 3rgf_A           26 GCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGIS----MSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDY  101 (405)
T ss_dssp             SCCCC-----EEEEEEESSSSCCCCEEEEECSSSSCC----HHHHHHHHHHHHCCCTTBCCCCEEEEETTTTEEEEEEEC
T ss_pred             CcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCCCC----HHHHHHHHHHHhcCCCCeeeEeeEEecCCCCeEEEEEeC
Confidence            457999999999999854    466788888643322    45778999999999999999999994  46689999999


Q ss_pred             CCCCCHHHHhhcCC-------CcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCcccee
Q psy12580        181 MAWGSLYALLHEGA-------GIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV  236 (239)
Q Consensus       181 ~~~gsL~~~l~~~~-------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill  236 (239)
                      +++ +|.+++....       ...+++..++.++.||+.||.|||+.+  |+||||||+|||+
T Consensus       102 ~~~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~--ivH~Dlkp~NIll  161 (405)
T 3rgf_A          102 AEH-DLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANW--VLHRDLKPANILV  161 (405)
T ss_dssp             CSE-EHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCGGGEEE
T ss_pred             CCC-CHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHhCC--EeCCCcCHHHeEE
Confidence            975 8988886321       124899999999999999999999999  9999999999999

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=99.91  E-value=1.8e-24  Score=171.55  Aligned_cols=127  Identities=18%  Similarity=0.306  Sum_probs=104.4

Q ss_pred             CCCccc-ccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHH-hHhhhcCCCceeeeeeeeeC----CCc
Q psy12580        102 NDLSLH-TKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEF-PKLRIFSHPNVLPVIGCVNS----PPD  173 (239)
Q Consensus       102 ~~~~~~-~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~-~~l~~l~h~~iv~l~~~~~~----~~~  173 (239)
                      ++|.+. +.||+|+||.||+|...  +..+++|++...   ..    ...|+ ..+..++||||+++++++..    ...
T Consensus        28 ~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~---~~----~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~  100 (336)
T 3fhr_A           28 DDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDS---PK----ARQEVDHHWQASGGPHIVCILDVYENMHHGKRC  100 (336)
T ss_dssp             GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESS---HH----HHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEE
T ss_pred             ceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCc---HH----HHHHHHHHHHhcCCCChHHHHHHHhhccCCCce
Confidence            567774 56999999999999874  677888888532   21    22233 33566799999999999865    346


Q ss_pred             eEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        174 LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .++||||+++|+|.+++.......+++..++.++.|++.||.|||+.+  |+||||||+|||++
T Consensus       101 ~~lv~e~~~gg~L~~~l~~~~~~~l~~~~~~~i~~ql~~~l~~LH~~~--ivH~dlkp~NIll~  162 (336)
T 3fhr_A          101 LLIIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLHSHN--IAHRDVKPENLLYT  162 (336)
T ss_dssp             EEEEEECCTTEEHHHHHHTC-CCCCBHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEES
T ss_pred             EEEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC--eecCCCCHHHEEEE
Confidence            899999999999999999876557999999999999999999999999  99999999999995

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=99.90  E-value=2.8e-24  Score=175.29  Aligned_cols=127  Identities=16%  Similarity=0.230  Sum_probs=104.3

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCC------Cc
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSP------PD  173 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~------~~  173 (239)
                      ..|...+.||+|+||.||+|.+  .+..+++|.+....      ....+|+.+++.++||||+++++++...      ..
T Consensus        54 ~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~------~~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~  127 (420)
T 1j1b_A           54 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK------RFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVY  127 (420)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCT------TSCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEE
T ss_pred             ceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccc------hhHHHHHHHHHHcCCCCccceeeEEeccCCCCccee
Confidence            4578889999999999999987  35778888875432      1234799999999999999999988432      14


Q ss_pred             eEEEEeeCCCCCHHHHhhc--CCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        174 LVVISQYMAWGSLYALLHE--GAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~--~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +++||||+++ +|.+++..  .....+++..++.++.||++||.|||+.+  |+||||||+|||++
T Consensus       128 ~~lv~e~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~--ivHrDlkp~NILl~  190 (420)
T 1j1b_A          128 LNLVLDYVPE-TVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFG--ICHRDIKPQNLLLD  190 (420)
T ss_dssp             EEEEEECCCE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTT--EECSCCSGGGEEEE
T ss_pred             EEeehhcccc-cHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCC--ccccCCChhhEEEe
Confidence            7799999976 77776653  12236999999999999999999999999  99999999999997

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.90  E-value=2e-24  Score=180.89  Aligned_cols=119  Identities=12%  Similarity=0.113  Sum_probs=95.5

Q ss_pred             cccccCCCCCCceeeccCCCceeeeeeeeccCCch------HHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEee
Q psy12580        107 HTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPR------VSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQY  180 (239)
Q Consensus       107 ~~~ig~g~~g~v~~~~~~~~~~~vk~~~~~~~~~~------~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~  180 (239)
                      .+.||+|+||.||+|.+.+..+++|..........      ..+.+.+|+.++++++||||+++..++...+..+|||||
T Consensus       341 ~~~LG~G~fg~Vy~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lVmE~  420 (540)
T 3en9_A          341 EHLIGKGAEADIKRDSYLDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRIMMSY  420 (540)
T ss_dssp             -------CCEEEEEEECSSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEEEEEC
T ss_pred             CCEEeeCCCEEEEEEEECCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEEEEEC
Confidence            46899999999999988888888887755433221      134578999999999999999666666667778999999


Q ss_pred             CCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        181 MAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       181 ~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +++|+|.+++..          +..++.|+++||+|||+.+  |+||||||+|||++
T Consensus       421 ~~ggsL~~~l~~----------~~~i~~qi~~aL~~LH~~g--IiHrDiKp~NILl~  465 (540)
T 3en9_A          421 INGKLAKDVIED----------NLDIAYKIGEIVGKLHKND--VIHNDLTTSNFIFD  465 (540)
T ss_dssp             CCSEEHHHHSTT----------CTHHHHHHHHHHHHHHHTT--EECTTCCTTSEEES
T ss_pred             CCCCCHHHHHHH----------HHHHHHHHHHHHHHHHHCc--CccCCCCHHHEEEC
Confidence            999999999876          5689999999999999999  99999999999986

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=99.90  E-value=1.1e-23  Score=168.42  Aligned_cols=132  Identities=14%  Similarity=0.210  Sum_probs=96.3

Q ss_pred             CCCCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCc----
Q psy12580        100 SLNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPD----  173 (239)
Q Consensus       100 ~~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~----  173 (239)
                      ..++|.+.+.||+|+||.||+|...  +..+++|.+......   ......++..+..++||||+++++++...+.    
T Consensus        21 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~---~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~~~~   97 (360)
T 3e3p_A           21 EMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPRF---RNRELQIMQDLAVLHHPNIVQLQSYFYTLGERDRR   97 (360)
T ss_dssp             HHTTEEEC----------CEEEEETTTCCEEEEEEEECCTTC---CCHHHHHHHHHHHHCCTTBCCEEEEEEEECSSCTT
T ss_pred             hccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCccc---cHHHHHHHHHHHhcCCCCcccHHHhhhcccccccc
Confidence            3467889999999999999999874  567888887543222   2345677788888999999999999865432    


Q ss_pred             ---eEEEEeeCCCCCHHHHhhc--CCCcccCHHHHHHHHHHHHHHhhhhh--cCCCCcccCCCCCccceee
Q psy12580        174 ---LVVISQYMAWGSLYALLHE--GAGIVVDFAQALRFAVDVARGMAFLH--SLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 ---~~lv~e~~~~gsL~~~l~~--~~~~~~~~~~~~~~~~~i~~~l~~lH--~~~~~ivHrdikp~Nill~  237 (239)
                         .++||||+++ +|.+.+..  .....+++..+..++.|++.||.|||  +.+  |+||||||+|||++
T Consensus        98 ~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~~--ivH~Dlkp~NIll~  165 (360)
T 3e3p_A           98 DIYLNVVMEYVPD-TLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHLPSVN--VCHRDIKPHNVLVN  165 (360)
T ss_dssp             CEEEEEEEECCSC-BHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHTSTTTC--CBCSCCCGGGEEEE
T ss_pred             ceeEEEEeecccc-cHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhCCCCC--eecCcCCHHHEEEe
Confidence               8899999986 66655542  22236899999999999999999999  888  99999999999996

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=99.90  E-value=1.8e-24  Score=176.84  Aligned_cols=130  Identities=18%  Similarity=0.248  Sum_probs=109.1

Q ss_pred             CCCCCCcccccccCCCCCC-ceeeccCCCceeeeeeeeccCCchHHHHHHHHHhHhhhc-CCCceeeeeeeeeCCCceEE
Q psy12580         99 ISLNDLSLHTKISSGPNGD-TWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIF-SHPNVLPVIGCVNSPPDLVV  176 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g~~g~-v~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~l~~~~~~~~~~~l  176 (239)
                      +....|...+.||+|+||. ++++...+..+|+|.+.....     ..+.+|+.+++.+ +||||+++++++......++
T Consensus        21 i~~~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~~-----~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~l   95 (432)
T 3p23_A           21 VGKISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECF-----SFADREVQLLRESDEHPNVIRYFCTEKDRQFQYI   95 (432)
T ss_dssp             ETTEEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTTTE-----EECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEE
T ss_pred             EccEEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHHHH-----HHHHHHHHHHHhccCCCCcCeEEEEEecCCEEEE
Confidence            3445678889999999998 566677888999998854322     2355799999998 79999999999999999999


Q ss_pred             EEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        177 ISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       177 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||||+. |+|.+++..... .+++..+..++.||+.||.|||+.+  |+||||||+|||++
T Consensus        96 v~E~~~-g~L~~~l~~~~~-~~~~~~~~~i~~qi~~aL~~LH~~~--ivHrDlKp~NIll~  152 (432)
T 3p23_A           96 AIELCA-ATLQEYVEQKDF-AHLGLEPITLLQQTTSGLAHLHSLN--IVHRDLKPHNILIS  152 (432)
T ss_dssp             EEECCS-EEHHHHHHSSSC-CCCSSCHHHHHHHHHHHHHHHHHTT--CCCCCCSTTSEEEC
T ss_pred             EEECCC-CCHHHHHHhcCC-CccchhHHHHHHHHHHHHHHHHHCc--CEeCCCCHHHEEEe
Confidence            999996 599999987652 3555567899999999999999999  99999999999994

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=99.90  E-value=4.8e-24  Score=167.68  Aligned_cols=136  Identities=14%  Similarity=0.196  Sum_probs=103.9

Q ss_pred             CCCCCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceE
Q psy12580         98 GISLNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLV  175 (239)
Q Consensus        98 ~~~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~  175 (239)
                      ....++|...+.||+|+||.||+|..  .+..+++|++..........+.+..+..+++.++||||+++++++...+..+
T Consensus        21 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~  100 (318)
T 2dyl_A           21 QAEINDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVF  100 (318)
T ss_dssp             ECCGGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEE
T ss_pred             hhhhccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcEE
Confidence            34557888999999999999999987  3677888888654433333334444555677889999999999999999999


Q ss_pred             EEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcC-CCCcccCCCCCccceee
Q psy12580        176 VISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSL-ERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       176 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~-~~~ivHrdikp~Nill~  237 (239)
                      +||||+ ++.+..+..... ..+++..+..++.|++.||.|||+. +  |+||||||+|||++
T Consensus       101 lv~e~~-~~~~~~l~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~~--i~H~dlkp~Nil~~  159 (318)
T 2dyl_A          101 IAMELM-GTCAEKLKKRMQ-GPIPERILGKMTVAIVKALYYLKEKHG--VIHRDVKPSNILLD  159 (318)
T ss_dssp             EEECCC-SEEHHHHHHHHT-SCCCHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCCGGGEEEC
T ss_pred             EEEecc-CCcHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHhhCC--EEeCCCCHHHEEEC
Confidence            999999 546666655422 2689999999999999999999995 9  99999999999986

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=99.90  E-value=8.7e-24  Score=173.09  Aligned_cols=128  Identities=20%  Similarity=0.208  Sum_probs=102.9

Q ss_pred             CCCcccccccCCCCCCce-eeccCCCceeeeeeeeccCCchHHHHHHHHHhHhhhc-CCCceeeeeeeeeCCCceEEEEe
Q psy12580        102 NDLSLHTKISSGPNGDTW-RGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIF-SHPNVLPVIGCVNSPPDLVVISQ  179 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~-~~~~~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~l~~~~~~~~~~~lv~e  179 (239)
                      +-+...+.||+|+||.|| .+...+..+|+|.+...     ..+.+.+|+.++.++ +||||+++++++...+..++|||
T Consensus        15 ~~~~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~-----~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~E   89 (434)
T 2rio_A           15 NLVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLID-----FCDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALE   89 (434)
T ss_dssp             SCEEEEEEEEECSTTCEEEEEESSSSEEEEEEEEGG-----GHHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEEC
T ss_pred             heeeccCeEeeCCCeEEEEEEEECCeEEEEEEEcHH-----HHHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEEe
Confidence            334556889999999996 44567788999988543     234577899999876 89999999999999999999999


Q ss_pred             eCCCCCHHHHhhcCCCcc-----cCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        180 YMAWGSLYALLHEGAGIV-----VDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       180 ~~~~gsL~~~l~~~~~~~-----~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |++ |+|.+++.......     .++..++.++.||+.||+|||+.+  |+||||||+|||++
T Consensus        90 ~~~-gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~--ivHrDLkp~NILl~  149 (434)
T 2rio_A           90 LCN-LNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHSLK--IIHRDLKPQNILVS  149 (434)
T ss_dssp             CCS-EEHHHHHHTC------------CCHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEEE
T ss_pred             cCC-CCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHHCC--ccccCCChHhEEEe
Confidence            996 59999998754211     123345789999999999999999  99999999999996

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=99.90  E-value=1.7e-24  Score=174.01  Aligned_cols=134  Identities=13%  Similarity=0.079  Sum_probs=94.8

Q ss_pred             CCCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCc-hHHHHHHHHHhHhhhc--CCCceeeee-------ee
Q psy12580        100 SLNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTP-RVSRDFNEEFPKLRIF--SHPNVLPVI-------GC  167 (239)
Q Consensus       100 ~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~-~~~~~~~~e~~~l~~l--~h~~iv~l~-------~~  167 (239)
                      ...+|...+.||+|+||.||+|.+  .+..+|+|++....... ...+.+.+|+.++..+  +||||++++       ++
T Consensus        60 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~p~d~  139 (371)
T 3q60_A           60 GERKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDA  139 (371)
T ss_dssp             CEEEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC----------CBCCCCEE
T ss_pred             CceeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcccChhhhhhceeEEeeehh
Confidence            345688999999999999999986  45678889987754422 3345677775544444  699988755       33


Q ss_pred             eeCC-----------------CceEEEEeeCCCCCHHHHhhcCCCcccCHHHH------HHHHHHHHHHhhhhhcCCCCc
Q psy12580        168 VNSP-----------------PDLVVISQYMAWGSLYALLHEGAGIVVDFAQA------LRFAVDVARGMAFLHSLERII  224 (239)
Q Consensus       168 ~~~~-----------------~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~------~~~~~~i~~~l~~lH~~~~~i  224 (239)
                      +..+                 ..+++||||++ |+|.+++..... .+++..+      ..++.||++||+|||+.+  |
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~-~~~~~~~~~~~vk~~i~~qi~~aL~~LH~~~--i  215 (371)
T 3q60_A          140 VAVQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLDF-VYVFRGDEGILALHILTAQLIRLAANLQSKG--L  215 (371)
T ss_dssp             EEETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHHHH-SCCCCHHHHHHHHHHHHHHHHHHHHHHHHTT--E
T ss_pred             eecCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHhcc-ccchhhhhhhhhHHHHHHHHHHHHHHHHHCC--C
Confidence            3322                 23899999998 799999986431 2444455      677899999999999999  9


Q ss_pred             ccCCCCCccceee
Q psy12580        225 PQYQLNSRHVMVY  237 (239)
Q Consensus       225 vHrdikp~Nill~  237 (239)
                      +||||||+|||++
T Consensus       216 vHrDikp~NIll~  228 (371)
T 3q60_A          216 VHGHFTPDNLFIM  228 (371)
T ss_dssp             EETTCSGGGEEEC
T ss_pred             ccCcCCHHHEEEC
Confidence            9999999999996

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=99.90  E-value=3.6e-24  Score=172.02  Aligned_cols=133  Identities=14%  Similarity=0.204  Sum_probs=113.0

Q ss_pred             CCCCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcC-----------CCceeeee
Q psy12580         99 ISLNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFS-----------HPNVLPVI  165 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~-----------h~~iv~l~  165 (239)
                      +...+|.+.+.||+|+||.||+|..  .+..+++|++...   ......+.+|+.++..+.           ||||++++
T Consensus        16 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~   92 (373)
T 1q8y_A           16 YKDARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGD---KVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLL   92 (373)
T ss_dssp             ETTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC---HHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCC
T ss_pred             ccCCeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCC---ccchhhhhHHHHHHHHhhcccccchhccccchHHHHH
Confidence            3457789999999999999999986  4577888887532   334466788998888875           78999999


Q ss_pred             eeeeCCC----ceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcC-CCCcccCCCCCccceee
Q psy12580        166 GCVNSPP----DLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSL-ERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       166 ~~~~~~~----~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~-~~~ivHrdikp~Nill~  237 (239)
                      +++...+    ..++|||++ +++|.+++.......+++..+..++.||+.||.|||+. |  |+||||||+|||++
T Consensus        93 ~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~~--ivH~Dikp~NIll~  166 (373)
T 1q8y_A           93 DHFNHKGPNGVHVVMVFEVL-GENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCG--IIHTDIKPENVLME  166 (373)
T ss_dssp             EEEEEEETTEEEEEEEECCC-CEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTC--EECSCCSGGGEEEE
T ss_pred             HHhhccCCCCceEEEEEecC-CCCHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHhcCC--EEecCCChHHeEEe
Confidence            9987543    789999999 78999999876545699999999999999999999997 9  99999999999994

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=99.90  E-value=5e-24  Score=172.48  Aligned_cols=127  Identities=17%  Similarity=0.267  Sum_probs=102.3

Q ss_pred             CCCcccccccCCCCCCceeecc-CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCC------ce
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW-QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP------DL  174 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~------~~  174 (239)
                      ..|...+.||+|+||.||+|.. .++.+++|.+.....      ...+|+.+++.++||||+++++++...+      .+
T Consensus        40 ~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~~------~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~  113 (394)
T 4e7w_A           40 IAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKR------FKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFL  113 (394)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCTT------SCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEE
T ss_pred             ceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCcc------hHHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEE
Confidence            4688999999999999999988 445677776654321      1236899999999999999999985443      38


Q ss_pred             EEEEeeCCCCCHHHHhhc--CCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        175 VVISQYMAWGSLYALLHE--GAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       175 ~lv~e~~~~gsL~~~l~~--~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ++||||+++ ++.+.+..  .....+++..++.++.|++.||+|||+.|  |+||||||+|||++
T Consensus       114 ~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~--ivHrDlkp~Nill~  175 (394)
T 4e7w_A          114 NLVLEYVPE-TVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIHSIG--ICHRDIKPQNLLLD  175 (394)
T ss_dssp             EEEEECCSE-EHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEEE
T ss_pred             EEEeeccCc-cHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCC--ccCCCCCHHHEEEc
Confidence            899999987 44444432  11236899999999999999999999999  99999999999997

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=99.90  E-value=1.2e-23  Score=163.85  Aligned_cols=129  Identities=17%  Similarity=0.197  Sum_probs=108.6

Q ss_pred             CCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeee-eCCCceEEE
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCV-NSPPDLVVI  177 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~-~~~~~~~lv  177 (239)
                      .++|.+.+.||+|+||.||+|..  .+..+++|++......    +.+.+|+.++..++|++++..+..+ ...+..++|
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~----~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv   83 (296)
T 3uzp_A            8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKH----PQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMV   83 (296)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSSC----CHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEE
T ss_pred             ccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcch----hHHHHHHHHHHHhhcCCCCCccccccCCCCceEEE
Confidence            36788999999999999999985  5677888987654332    3578899999999988766666554 566688999


Q ss_pred             EeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        178 SQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       178 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |||+ +++|.+++.... ..+++..+..++.|++.||.|||+.+  |+||||||+|||++
T Consensus        84 ~e~~-~~~L~~~~~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~~--ivH~dlkp~NIl~~  139 (296)
T 3uzp_A           84 MELL-GPSLEDLFNFCS-RKFSLKTVLLLADQMISRIEYIHSKN--FIHRDVKPDNFLMG  139 (296)
T ss_dssp             EECC-CCBHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCCGGGEEEC
T ss_pred             EEec-CCCHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHHhCC--eeeCCCCHHHeEEe
Confidence            9999 889999998544 25999999999999999999999999  99999999999994

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=99.90  E-value=1.9e-23  Score=162.62  Aligned_cols=127  Identities=17%  Similarity=0.226  Sum_probs=104.9

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeee-eCCCceEEEE
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCV-NSPPDLVVIS  178 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~-~~~~~~~lv~  178 (239)
                      +.|.+.+.||+|+||.||+|..  .+..+++|++......    ..+.+|+.++..++|++++..+..+ ...+..++||
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~----~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~   84 (296)
T 4hgt_A            9 NRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKH----PQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVM   84 (296)
T ss_dssp             --CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC---C----CCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEE
T ss_pred             CceEEeeeecCCCCeEEEEEEEcCCCceEEEEeecccccc----hHHHHHHHHHHHhcCCCCCCeeeeecCCCCceEEEE
Confidence            6788999999999999999985  5677888876544322    3477899999999988766666555 6667889999


Q ss_pred             eeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCcccee
Q psy12580        179 QYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV  236 (239)
Q Consensus       179 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill  236 (239)
                      ||+ +++|.+++..... .+++..+..++.|++.||.|||+.+  |+||||||+|||+
T Consensus        85 e~~-~~~L~~~~~~~~~-~~~~~~~~~i~~qi~~~l~~LH~~~--ivH~Dlkp~NIl~  138 (296)
T 4hgt_A           85 ELL-GPSLEDLFNFCSR-KFSLKTVLLLADQMISRIEYIHSKN--FIHRDVKPDNFLM  138 (296)
T ss_dssp             ECC-CCBHHHHHHHTTS-CCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEE
T ss_pred             Ecc-CCCHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHCC--eecCCCCHHHeee
Confidence            999 8899999986442 5999999999999999999999999  9999999999998

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=99.90  E-value=2.8e-23  Score=171.61  Aligned_cols=129  Identities=18%  Similarity=0.181  Sum_probs=108.9

Q ss_pred             CCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCC-CceeeeeeeeeCCCceEEE
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSH-PNVLPVIGCVNSPPDLVVI  177 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h-~~iv~l~~~~~~~~~~~lv  177 (239)
                      .++|.+.+.||+|+||.||+|.+  .+..+++|++......    ..+..|+.++..+.| +++..+..++...+..+||
T Consensus         6 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~----~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~lv   81 (483)
T 3sv0_A            6 GNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKH----PQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLV   81 (483)
T ss_dssp             TTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCSS----CCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEEE
T ss_pred             CCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEecccccc----HHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEEE
Confidence            36788999999999999999986  4677888887654332    347789999999977 5666666677777889999


Q ss_pred             EeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        178 SQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       178 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |||+ +++|.+++..... .+++..++.++.||+.||+|||+.+  ||||||||+||||+
T Consensus        82 me~~-g~sL~~ll~~~~~-~l~~~~~~~i~~qi~~aL~yLH~~g--IvHrDIKP~NILl~  137 (483)
T 3sv0_A           82 MDLL-GPSLEDLFNFCSR-KLSLKTVLMLADQMINRVEFVHSKS--FLHRDIKPDNFLMG  137 (483)
T ss_dssp             EECC-CCBHHHHHHHTTT-CCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEEC
T ss_pred             EECC-CCCHHHHHHhhcC-CCCHHHHHHHHHHHHHHHHHHHHCC--EeecccCcceEEEe
Confidence            9999 8899999986432 5999999999999999999999999  99999999999993

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=99.89  E-value=2.8e-23  Score=165.56  Aligned_cols=130  Identities=11%  Similarity=0.162  Sum_probs=110.5

Q ss_pred             CCCCcccccccCCCCCCceeeccC--C-CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCc------eeeeeeeeeCC
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRWQ--K-NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPN------VLPVIGCVNSP  171 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~~--~-~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~------iv~l~~~~~~~  171 (239)
                      .+.|.+.+.||+|+||.||+|...  + ..+++|++...   ....+.+.+|+.+++.++|++      ++.+++++...
T Consensus        18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~   94 (355)
T 2eu9_A           18 QERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNV---GKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFH   94 (355)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSC---HHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEET
T ss_pred             cccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEccc---ccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeC
Confidence            467899999999999999999863  3 45777887532   334467788999999887654      89999999999


Q ss_pred             CceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCcccee
Q psy12580        172 PDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV  236 (239)
Q Consensus       172 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill  236 (239)
                      +..++||||+ +++|.+++.......+++..++.++.||+.||.|||+.+  |+||||||+|||+
T Consensus        95 ~~~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~lH~~~--ivH~Dlkp~NIll  156 (355)
T 2eu9_A           95 GHMCIAFELL-GKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLHENQ--LTHTDLKPENILF  156 (355)
T ss_dssp             TEEEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHTTT--EECCCCCGGGEEE
T ss_pred             CeEEEEEecc-CCChHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCC--cccCCCCHHHEEE
Confidence            9999999999 568888887765456999999999999999999999999  9999999999998

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=99.89  E-value=3.9e-23  Score=166.63  Aligned_cols=131  Identities=16%  Similarity=0.274  Sum_probs=110.4

Q ss_pred             CCCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcC-CC-----ceeeeeeeeeCCC
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFS-HP-----NVLPVIGCVNSPP  172 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~-h~-----~iv~l~~~~~~~~  172 (239)
                      .++|.+.+.||+|+||.||+|...  +..+++|++...   ......+..|+.++..+. |+     +|+++++++...+
T Consensus        53 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~~  129 (382)
T 2vx3_A           53 MDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNK---KAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRN  129 (382)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSS---HHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEETT
T ss_pred             eeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEecc---HHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccCC
Confidence            467899999999999999999763  566888888532   333456778888888774 45     4999999999999


Q ss_pred             ceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhc--CCCCcccCCCCCccceee
Q psy12580        173 DLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS--LERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       173 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~--~~~~ivHrdikp~Nill~  237 (239)
                      ..++||||+++ +|.+++.......+++..+..++.|++.||.|||+  .+  ||||||||+|||++
T Consensus       130 ~~~lv~e~~~~-~L~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~~~--ivHrDlkp~NIll~  193 (382)
T 2vx3_A          130 HLCLVFEMLSY-NLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLATPELS--IIHCDLKPENILLC  193 (382)
T ss_dssp             EEEEEEECCCC-BHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTSTTTC--EECCCCSGGGEEES
T ss_pred             ceEEEEecCCC-CHHHHHhhcCcCCCCHHHHHHHHHHHHHHHHHhccCCCC--EEcCCCCcccEEEe
Confidence            99999999965 99999988654569999999999999999999995  56  99999999999994

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.86  E-value=2.9e-22  Score=154.85  Aligned_cols=121  Identities=15%  Similarity=0.104  Sum_probs=93.8

Q ss_pred             CCCcccccccCCCCCCceeeccC-CCceeeeeeeeccCCc----------------hHHHHHHHHHhHhhhcCCCceeee
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRWQ-KNDIVAKILAVRNCTP----------------RVSRDFNEEFPKLRIFSHPNVLPV  164 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~~vk~~~~~~~~~----------------~~~~~~~~e~~~l~~l~h~~iv~l  164 (239)
                      ..+.+.+.||+|+||.||+|.+. +..+++|.+.......                .....+.+|+.+++.++  | +++
T Consensus        90 ~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~--~-~~v  166 (282)
T 1zar_A           90 KVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQ--G-LAV  166 (282)
T ss_dssp             SCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTT--T-SSS
T ss_pred             eEEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhcc--C-CCc
Confidence            33456699999999999999984 5678889885432111                13456889999999998  4 666


Q ss_pred             eeeeeCCCceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        165 IGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       165 ~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .+++.. +..++||||+++|+|.+ +..        .....++.|++.||.|||+.|  |+||||||+|||++
T Consensus       167 ~~~~~~-~~~~lvmE~~~g~~L~~-l~~--------~~~~~i~~qi~~~l~~lH~~g--iiHrDlkp~NILl~  227 (282)
T 1zar_A          167 PKVYAW-EGNAVLMELIDAKELYR-VRV--------ENPDEVLDMILEEVAKFYHRG--IVHGDLSQYNVLVS  227 (282)
T ss_dssp             CCEEEE-ETTEEEEECCCCEEGGG-CCC--------SCHHHHHHHHHHHHHHHHHTT--EECSCCSTTSEEEE
T ss_pred             CeEEec-cceEEEEEecCCCcHHH-cch--------hhHHHHHHHHHHHHHHHHHCC--CEeCCCCHHHEEEE
Confidence            665543 45799999999999988 422        224579999999999999999  99999999999986

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.85  E-value=1.5e-21  Score=139.58  Aligned_cols=131  Identities=28%  Similarity=0.385  Sum_probs=94.5

Q ss_pred             CcCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCc
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSW   81 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (239)
                      .|||.+|.+|+||||+|+..++.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+ +.|++++..+..|.||
T Consensus        28 advn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll-~~gadvn~~d~~G~Tp  106 (169)
T 4gpm_A           28 ADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLI-SKGADVNAKDSDGRTP  106 (169)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCH
T ss_pred             CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHHHHHHH-HCcCCCCCCCCCCCCH
Confidence            478888888888888888888888888888888888888888888888888888888888884 5788888888888888


Q ss_pred             cccccccCccccccccCCCCCCCcccccccCCCCCCceeeccCCCceeeeeeeec
Q psy12580         82 LGLKTRSRDATLSRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVR  136 (239)
Q Consensus        82 l~~a~~~~~~~~~~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~vk~~~~~  136 (239)
                      +++|...++..+.+..--...++...+.-|.++   ...+...+...+++.+...
T Consensus       107 Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~Tp---L~~A~~~g~~~iv~~Ll~~  158 (169)
T 4gpm_A          107 LHHAAENGHKEVVKLLISKGADVNTSDSDGRTP---LDLAREHGNEEVVKLLEKQ  158 (169)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH---HHHHHHTTCHHHHHHHHTC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH---HHHHHHcCCHHHHHHHHHC
Confidence            888888887766664433333333333333332   3444445555556555443

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=99.85  E-value=1.5e-21  Score=158.88  Aligned_cols=138  Identities=14%  Similarity=0.076  Sum_probs=100.5

Q ss_pred             cCCCCCCCcccccccCCCCCCceeeccC--CCceeeeeeeeccC-CchHHHHHHHHHhHhhhcCC-Cceee---------
Q psy12580         97 KGISLNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNC-TPRVSRDFNEEFPKLRIFSH-PNVLP---------  163 (239)
Q Consensus        97 ~~~~~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~-~~~~~~~~~~e~~~l~~l~h-~~iv~---------  163 (239)
                      .......+...+.||+|+||.||+|.+.  +..+|+|++..... .....+.+.+|+.++..+.| +|...         
T Consensus        73 ~~~~~~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~  152 (413)
T 3dzo_A           73 LGERPRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIF  152 (413)
T ss_dssp             SSSCCEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCC
T ss_pred             CCCCceeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhccccc
Confidence            3444566788899999999999999974  67888898864322 22234678899999999876 32111         


Q ss_pred             ------e------eeeeeC-----CCceEEEEeeCCCCCHHHHhh-----cCCCcccCHHHHHHHHHHHHHHhhhhhcCC
Q psy12580        164 ------V------IGCVNS-----PPDLVVISQYMAWGSLYALLH-----EGAGIVVDFAQALRFAVDVARGMAFLHSLE  221 (239)
Q Consensus       164 ------l------~~~~~~-----~~~~~lv~e~~~~gsL~~~l~-----~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~  221 (239)
                            +      ..++..     ....+++|+++ +++|.++++     ...+..+++..+..++.|+++||+|||+.+
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~  231 (413)
T 3dzo_A          153 PFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYG  231 (413)
T ss_dssp             CCEEEECCC---------------CCSEEEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             chhhcccCCCCccccccCCCccccccceEEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence                  1      111111     12467888877 569999995     233346889999999999999999999999


Q ss_pred             CCcccCCCCCccceee
Q psy12580        222 RIIPQYQLNSRHVMVY  237 (239)
Q Consensus       222 ~~ivHrdikp~Nill~  237 (239)
                        ||||||||+|||++
T Consensus       232 --iiHrDiKp~NILl~  245 (413)
T 3dzo_A          232 --LVHTYLRPVDIVLD  245 (413)
T ss_dssp             --EECSCCCGGGEEEC
T ss_pred             --cccCCcccceEEEe
Confidence              99999999999996

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.83  E-value=1.2e-21  Score=140.03  Aligned_cols=95  Identities=33%  Similarity=0.529  Sum_probs=87.4

Q ss_pred             CcCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCc
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSW   81 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (239)
                      .|+|.+|.+|+||||+||..|+.+++++|+++|+++|.+|.+|+||||+|+..|+.+++++|+ +.|++++..|..|.||
T Consensus        61 ad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll-~~gad~~~~d~~G~Tp  139 (169)
T 4gpm_A           61 ADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLI-SKGADVNTSDSDGRTP  139 (169)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCH
T ss_pred             cchhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCccccCCCCCCH
Confidence            478999999999999999999999999999999999999999999999999999999999995 5899999999999999


Q ss_pred             cccccccCcccccccc
Q psy12580         82 LGLKTRSRDATLSRHK   97 (239)
Q Consensus        82 l~~a~~~~~~~~~~~~   97 (239)
                      +++|...++..+.+..
T Consensus       140 L~~A~~~g~~~iv~~L  155 (169)
T 4gpm_A          140 LDLAREHGNEEVVKLL  155 (169)
T ss_dssp             HHHHHHTTCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHH
Confidence            9999988877666543

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=99.81  E-value=1.3e-20  Score=143.98  Aligned_cols=123  Identities=16%  Similarity=0.151  Sum_probs=92.0

Q ss_pred             CcccccccCCCCCCceeecc--CCCc--eeeeeeeeccCCc----------------------hHHHHHHHHHhHhhhcC
Q psy12580        104 LSLHTKISSGPNGDTWRGRW--QKND--IVAKILAVRNCTP----------------------RVSRDFNEEFPKLRIFS  157 (239)
Q Consensus       104 ~~~~~~ig~g~~g~v~~~~~--~~~~--~~vk~~~~~~~~~----------------------~~~~~~~~e~~~l~~l~  157 (239)
                      +.+.+.||+|+||.||+|.+  .+..  +|+|+........                      .....+.+|+..+..+.
T Consensus        49 ~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~  128 (258)
T 1zth_A           49 TAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAK  128 (258)
T ss_dssp             EEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHHH
Confidence            45678899999999999988  5667  8889864431110                      11235788999999998


Q ss_pred             CCce--eeeeeeeeCCCceEEEEeeCCC-C----CHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhh-cCCCCcccCCC
Q psy12580        158 HPNV--LPVIGCVNSPPDLVVISQYMAW-G----SLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH-SLERIIPQYQL  229 (239)
Q Consensus       158 h~~i--v~l~~~~~~~~~~~lv~e~~~~-g----sL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH-~~~~~ivHrdi  229 (239)
                      |+++  +..++.    ...+|||||+.+ |    +|.++...     .++..+..++.|++.||.||| +.|  ||||||
T Consensus       129 ~~~i~~p~~~~~----~~~~lVmE~~g~~g~~~~~L~~~~~~-----~~~~~~~~i~~qi~~~l~~lH~~~g--ivHrDl  197 (258)
T 1zth_A          129 EAGVSVPQPYTY----MKNVLLMEFIGEDELPAPTLVELGRE-----LKELDVEGIFNDVVENVKRLYQEAE--LVHADL  197 (258)
T ss_dssp             HTTCCCCCEEEE----ETTEEEEECCEETTEECCBHHHHGGG-----GGGSCHHHHHHHHHHHHHHHHHTSC--EECSSC
T ss_pred             hCCCCCCeEEEc----CCCEEEEEecCCCCCccccHHHHhhc-----cChHHHHHHHHHHHHHHHHHHHHCC--EEeCCC
Confidence            7753  444432    357899999942 4    77776543     235567899999999999999 999  999999


Q ss_pred             CCccceee
Q psy12580        230 NSRHVMVY  237 (239)
Q Consensus       230 kp~Nill~  237 (239)
                      ||+|||++
T Consensus       198 kp~NILl~  205 (258)
T 1zth_A          198 SEYNIMYI  205 (258)
T ss_dssp             STTSEEES
T ss_pred             CHHHEEEc
Confidence            99999986

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.80  E-value=8.8e-20  Score=117.40  Aligned_cols=85  Identities=40%  Similarity=0.679  Sum_probs=77.5

Q ss_pred             CCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCccccccccC
Q psy12580         10 HGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWLGLKTRSR   89 (239)
Q Consensus        10 ~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~   89 (239)
                      +|+||||+||..|+.+++++|++.|+++|.+|..|+||||+|+..|+.+++++|+ +.|++++..+..|.||+++|...+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll-~~ga~~~~~d~~g~t~l~~A~~~~   79 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL-EAGADVNAKDKNGRTPLHLAARNG   79 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCccCCCCCCHHHHHHHcC
Confidence            5899999999999999999999999999999999999999999999999999995 589999999999999999998887


Q ss_pred             cccccc
Q psy12580         90 DATLSR   95 (239)
Q Consensus        90 ~~~~~~   95 (239)
                      ...+.+
T Consensus        80 ~~~~~~   85 (93)
T 1n0q_A           80 HLEVVK   85 (93)
T ss_dssp             CHHHHH
T ss_pred             CHHHHH
Confidence            765544

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.80  E-value=1e-19  Score=123.30  Aligned_cols=85  Identities=32%  Similarity=0.419  Sum_probs=71.1

Q ss_pred             CcCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCc
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSW   81 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (239)
                      .++|.+|..|+||||+|+..++.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+ +.+++++..+..|.||
T Consensus        31 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll-~~ga~~~~~~~~g~t~  109 (123)
T 3aaa_C           31 EDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLL-SKGADKTVKGPDGLTA  109 (123)
T ss_dssp             CCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTSCCH
T ss_pred             CCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCCcCCCCCCH
Confidence            467888888888888888888888888888888888888888888888888888888888885 4688888888888888


Q ss_pred             cccccc
Q psy12580         82 LGLKTR   87 (239)
Q Consensus        82 l~~a~~   87 (239)
                      +++|..
T Consensus       110 l~~A~~  115 (123)
T 3aaa_C          110 FEATDN  115 (123)
T ss_dssp             HHHCCC
T ss_pred             HHHhCC
Confidence            887743

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.78  E-value=3.2e-19  Score=136.97  Aligned_cols=85  Identities=33%  Similarity=0.488  Sum_probs=58.1

Q ss_pred             cCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCcc
Q psy12580          3 YVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWL   82 (239)
Q Consensus         3 ~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l   82 (239)
                      ++|.+|..|+||||+||..|+.+++++|++.|+++|.++..|+||||+|+..|+.++|++|+ +.|++++..|..|.||+
T Consensus       144 ~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll-~~Gad~~~~d~~G~TpL  222 (269)
T 4b93_B          144 KPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLL-LHGASVQVLNKRQRTAV  222 (269)
T ss_dssp             CSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHH-HTTCCSCCCCTTSCCSG
T ss_pred             CCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHH-HCCCCCCCcCCCCCCHH
Confidence            56666667777777777777777777777777777777777777777777777777777664 46666666666677777


Q ss_pred             cccccc
Q psy12580         83 GLKTRS   88 (239)
Q Consensus        83 ~~a~~~   88 (239)
                      ++|...
T Consensus       223 ~~A~~~  228 (269)
T 4b93_B          223 DCAEQN  228 (269)
T ss_dssp             GGSCTT
T ss_pred             HHHHhC
Confidence            666543

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.78  E-value=6e-19  Score=121.60  Aligned_cols=92  Identities=35%  Similarity=0.514  Sum_probs=68.5

Q ss_pred             CcCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCc
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSW   81 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (239)
                      .++|.+|..|+||||+|+..++.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+ +.|++++..+..|.|+
T Consensus        38 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~tp  116 (136)
T 2jab_A           38 ADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLL-KHGADVNAQDKFGKTA  116 (136)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTSCCH
T ss_pred             CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCcCcCCCCCCH
Confidence            356777777777777777777777777777777777777777777777777777777777774 4677777777777777


Q ss_pred             cccccccCccccc
Q psy12580         82 LGLKTRSRDATLS   94 (239)
Q Consensus        82 l~~a~~~~~~~~~   94 (239)
                      +++|...+...+.
T Consensus       117 l~~A~~~~~~~~~  129 (136)
T 2jab_A          117 FDISIGNGNEDLA  129 (136)
T ss_dssp             HHHHHHTTCHHHH
T ss_pred             HHHHHHCCCHHHH
Confidence            7777766654443

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.77  E-value=9.6e-19  Score=120.67  Aligned_cols=110  Identities=26%  Similarity=0.311  Sum_probs=85.4

Q ss_pred             cCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCcc
Q psy12580          3 YVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWL   82 (239)
Q Consensus         3 ~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l   82 (239)
                      |+ .+|.+|+||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+ +.+.+++..+..|.||+
T Consensus         3 d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll-~~g~~~~~~~~~g~t~L   80 (137)
T 3c5r_A            3 DP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLL-QHKALVNTTGYQNDSPL   80 (137)
T ss_dssp             -C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCGGGCCHH
T ss_pred             CC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHH-HcCCcccCcCCCCCCHH
Confidence            45 67888999999999999999999999999999999999999999999999999998884 57888888888888999


Q ss_pred             ccccccCccccccccCCCCCCCcccccccCCC
Q psy12580         83 GLKTRSRDATLSRHKGISLNDLSLHTKISSGP  114 (239)
Q Consensus        83 ~~a~~~~~~~~~~~~~~~~~~~~~~~~ig~g~  114 (239)
                      ++|...+...+.+...-...+....+.-|...
T Consensus        81 ~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tp  112 (137)
T 3c5r_A           81 HDAAKNGHVDIVKLLLSYGASRNAVNIFGLRP  112 (137)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCG
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH
Confidence            98888887766664433333344444444443

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.76  E-value=9.2e-19  Score=120.76  Aligned_cols=93  Identities=40%  Similarity=0.544  Sum_probs=85.7

Q ss_pred             CcCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCc
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSW   81 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (239)
                      .++|.+|..|+||||+|+..++.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+ +.|++++..|..|.||
T Consensus        34 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~ga~~~~~~~~g~tp  112 (137)
T 3c5r_A           34 SDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLL-SYGASRNAVNIFGLRP  112 (137)
T ss_dssp             CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCG
T ss_pred             CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCCCCCCCCCH
Confidence            478999999999999999999999999999999999999999999999999999999999995 5899999999999999


Q ss_pred             cccccccCcccccc
Q psy12580         82 LGLKTRSRDATLSR   95 (239)
Q Consensus        82 l~~a~~~~~~~~~~   95 (239)
                      +++|...+...+..
T Consensus       113 l~~A~~~~~~~~l~  126 (137)
T 3c5r_A          113 VDYTDDESMKSLLL  126 (137)
T ss_dssp             GGGCCCHHHHHHHS
T ss_pred             HHHHhhccHHHHHh
Confidence            99988766555544

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=99.76  E-value=1.9e-19  Score=143.13  Aligned_cols=120  Identities=12%  Similarity=0.089  Sum_probs=82.8

Q ss_pred             CcccccccCCCCCCceeecc-CCCceeeeeeeeccCC------------chHHH--------HHHHHHhHhhhcCCCce-
Q psy12580        104 LSLHTKISSGPNGDTWRGRW-QKNDIVAKILAVRNCT------------PRVSR--------DFNEEFPKLRIFSHPNV-  161 (239)
Q Consensus       104 ~~~~~~ig~g~~g~v~~~~~-~~~~~~vk~~~~~~~~------------~~~~~--------~~~~e~~~l~~l~h~~i-  161 (239)
                      |.+...||+|++|.||+|.. .|..+|+|++......            .....        ....|...|.++.+..+ 
T Consensus        97 Y~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~gv~  176 (397)
T 4gyi_A           97 YSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEGFP  176 (397)
T ss_dssp             SEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred             EEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            67889999999999999987 5677888987532111            00001        12345555665543332 


Q ss_pred             -eeeeeeeeCCCceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        162 -LPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       162 -v~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                       ...++.    ...+|||||+++++|.++...        .....++.|++.+|.|||+.|  ||||||||.|||++
T Consensus       177 vp~p~~~----~~~~LVME~i~G~~L~~l~~~--------~~~~~l~~qll~~l~~lH~~g--IVHrDLKp~NILl~  239 (397)
T 4gyi_A          177 VPEPIAQ----SRHTIVMSLVDALPMRQVSSV--------PDPASLYADLIALILRLAKHG--LIHGDFNEFNILIR  239 (397)
T ss_dssp             CCCEEEE----ETTEEEEECCSCEEGGGCCCC--------SCHHHHHHHHHHHHHHHHHTT--EECSCCSTTSEEEE
T ss_pred             CCeeeec----cCceEEEEecCCccHhhhccc--------HHHHHHHHHHHHHHHHHHHCC--CcCCCCCHHHEEEe
Confidence             222222    123799999999888654321        234578899999999999999  99999999999985

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.76  E-value=1.7e-18  Score=121.69  Aligned_cols=90  Identities=33%  Similarity=0.481  Sum_probs=72.9

Q ss_pred             CCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCcccccc
Q psy12580          7 TDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWLGLKT   86 (239)
Q Consensus         7 ~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~   86 (239)
                      .|..|+||||+|+..|+.+++++|++.|++++.++..|+||||+|+..|+.+++++|+ +.|.+++..+..|.||+++|.
T Consensus        30 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~  108 (153)
T 1awc_B           30 TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLL-KHGADVNAKDMLKMTALHWAT  108 (153)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH-TTTCCTTCCCTTSCCHHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHHHHHHHH-HcCCCCCCCCCCCCCHHHHHH
Confidence            4777888888888888888888888888888888888888888888888888888884 478888888888888888888


Q ss_pred             ccCcccccccc
Q psy12580         87 RSRDATLSRHK   97 (239)
Q Consensus        87 ~~~~~~~~~~~   97 (239)
                      ..+...+.+..
T Consensus       109 ~~~~~~~v~~L  119 (153)
T 1awc_B          109 EHNHQEVVELL  119 (153)
T ss_dssp             HTTCHHHHHHH
T ss_pred             HcCCHHHHHHH
Confidence            77776665543

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.75  E-value=2e-18  Score=124.50  Aligned_cols=94  Identities=48%  Similarity=0.769  Sum_probs=87.0

Q ss_pred             cCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCcc
Q psy12580          3 YVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWL   82 (239)
Q Consensus         3 ~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l   82 (239)
                      ++|.+|..|+||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+ +.|++++..+..|.|++
T Consensus        31 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~d~~g~t~L  109 (179)
T 3f6q_A           31 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLL-QYKADINAVNEHGNVPL  109 (179)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHH
T ss_pred             cccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCccCCCCCCHH
Confidence            68899999999999999999999999999999999999999999999999999999999995 58999999999999999


Q ss_pred             ccccccCcccccccc
Q psy12580         83 GLKTRSRDATLSRHK   97 (239)
Q Consensus        83 ~~a~~~~~~~~~~~~   97 (239)
                      ++|...++..+.+..
T Consensus       110 ~~A~~~~~~~~v~~L  124 (179)
T 3f6q_A          110 HYACFWGQDQVAEDL  124 (179)
T ss_dssp             HHHHHTTCHHHHHHH
T ss_pred             HHHHHcCCHHHHHHH
Confidence            999988877666543

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.75  E-value=2.7e-18  Score=120.97  Aligned_cols=93  Identities=19%  Similarity=0.246  Sum_probs=77.1

Q ss_pred             cCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCcc
Q psy12580          3 YVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWL   82 (239)
Q Consensus         3 ~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l   82 (239)
                      ++|.+|..|+||||+ +..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+ +.|++++..+..|.||+
T Consensus        28 ~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L  105 (156)
T 1bd8_A           28 HPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLV-EHGADVNVPDGTGALPI  105 (156)
T ss_dssp             CTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCSCCCCTTSCCHH
T ss_pred             CccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHH-HcCCCCCCcCCCCCcHH
Confidence            678888888888888 8888888888888888888888888888888888888888888884 57888888888888888


Q ss_pred             ccccccCcccccccc
Q psy12580         83 GLKTRSRDATLSRHK   97 (239)
Q Consensus        83 ~~a~~~~~~~~~~~~   97 (239)
                      ++|...++..+.+..
T Consensus       106 ~~A~~~~~~~~v~~L  120 (156)
T 1bd8_A          106 HLAVQEGHTAVVSFL  120 (156)
T ss_dssp             HHHHHHTCHHHHHHH
T ss_pred             HHHHHhChHHHHHHH
Confidence            888887776666543

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.75  E-value=7.3e-19  Score=121.18  Aligned_cols=93  Identities=18%  Similarity=0.116  Sum_probs=85.9

Q ss_pred             cCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccC-CCCc
Q psy12580          3 YVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFK-DQSW   81 (239)
Q Consensus         3 ~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~-~~t~   81 (239)
                      ++|.+|.+|+||||+|+..|+.+++++|++.|++++.+|..|+||||+|+. |+.+++++|+ +.+++++..+.. |.||
T Consensus         4 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll-~~g~~~~~~~~~~g~t~   81 (136)
T 1d9s_A            4 GIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLL-LHGAEPNCADPATLTRP   81 (136)
T ss_dssp             CCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHH-HHTCCSSCCBTTTTBCH
T ss_pred             CccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHH-HCCCCCCCcCCCCCCCH
Confidence            789999999999999999999999999999999999999999999999999 9999999995 589999999999 9999


Q ss_pred             cccccccCcccccccc
Q psy12580         82 LGLKTRSRDATLSRHK   97 (239)
Q Consensus        82 l~~a~~~~~~~~~~~~   97 (239)
                      +++|...+...+.+..
T Consensus        82 L~~A~~~~~~~~v~~L   97 (136)
T 1d9s_A           82 VHDAAREGFLDTLVVL   97 (136)
T ss_dssp             HHHHHHHTCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHH
Confidence            9999988877666543

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.75  E-value=5.1e-19  Score=121.97  Aligned_cols=92  Identities=23%  Similarity=0.289  Sum_probs=84.9

Q ss_pred             CcCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCC-CCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCC
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRG-DDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQS   80 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~-g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t   80 (239)
                      .++|.+|..|+||||+|+. ++.+++++|++.|++++.+|.. |+||||+|+..|+.+++++|+ +.+++++..+..|.|
T Consensus        36 ~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~ga~~~~~d~~g~t  113 (136)
T 1d9s_A           36 ADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLH-RAGARLDVCDAWGRL  113 (136)
T ss_dssp             CCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHHHHHHHHTCHHHHHHHH-HTCCCCCCCSSSSSC
T ss_pred             CCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCccCCCCCC
Confidence            4789999999999999999 9999999999999999999999 999999999999999999995 589999999999999


Q ss_pred             ccccccccCcccccc
Q psy12580         81 WLGLKTRSRDATLSR   95 (239)
Q Consensus        81 ~l~~a~~~~~~~~~~   95 (239)
                      |+++|...++..+.+
T Consensus       114 pl~~A~~~~~~~~~~  128 (136)
T 1d9s_A          114 PVDLAEEQGHRDIAR  128 (136)
T ss_dssp             HHHHHHHHTCHHHHH
T ss_pred             HHHHHHHcCCHHHHH
Confidence            999998877655443

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.75  E-value=2.4e-18  Score=124.63  Aligned_cols=87  Identities=26%  Similarity=0.313  Sum_probs=76.9

Q ss_pred             CcCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccC-CCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCC
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATN-RGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQS   80 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~-~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t   80 (239)
                      .++|.+|..|+||||+|+..|+.+++++|++.|+++|.++ ..|+||||+|+..|+.+++++|+ +.|++++..+..|.|
T Consensus        67 ~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll-~~ga~~~~~d~~g~t  145 (183)
T 3deo_A           67 RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALV-ELGADIEVEDERGLT  145 (183)
T ss_dssp             SCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHH-HHTCCTTCCCTTSCC
T ss_pred             CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHH-HcCCCCcCCCCCCCC
Confidence            3688899999999999999999999999999999999888 88999999999999999999995 578999999999999


Q ss_pred             ccccccccC
Q psy12580         81 WLGLKTRSR   89 (239)
Q Consensus        81 ~l~~a~~~~   89 (239)
                      |+++|...+
T Consensus       146 pl~~A~~~~  154 (183)
T 3deo_A          146 ALELAREIL  154 (183)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            998877544

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.74  E-value=7.3e-18  Score=119.90  Aligned_cols=111  Identities=23%  Similarity=0.295  Sum_probs=89.1

Q ss_pred             cCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCcc
Q psy12580          3 YVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWL   82 (239)
Q Consensus         3 ~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l   82 (239)
                      +++..|..|+||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+ +.+++++..+..|.||+
T Consensus        34 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L  112 (165)
T 3twr_A           34 NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLV-KHGAVVNVADLWKFTPL  112 (165)
T ss_dssp             TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTCCCHH
T ss_pred             CccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcCcHHHHHHHH-hCCCCCCCcCCCCCCHH
Confidence            56677888899999999999999999999999999999999999999999999999999984 58889998999999999


Q ss_pred             ccccccCccccccccCCCCCCCcccccccCCC
Q psy12580         83 GLKTRSRDATLSRHKGISLNDLSLHTKISSGP  114 (239)
Q Consensus        83 ~~a~~~~~~~~~~~~~~~~~~~~~~~~ig~g~  114 (239)
                      ++|...++..+.+...-...+....+.-|...
T Consensus       113 ~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~  144 (165)
T 3twr_A          113 HEAAAKGKYEICKLLLQHGADPTKKNRDGNTP  144 (165)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCT
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCcccCCCCCCh
Confidence            99988888776664433333344444444444

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.74  E-value=2.3e-18  Score=114.26  Aligned_cols=91  Identities=27%  Similarity=0.366  Sum_probs=79.8

Q ss_pred             CccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCccc
Q psy12580          4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWLG   83 (239)
Q Consensus         4 v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l~   83 (239)
                      ++..|.+|+||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+ +.|++++..+..|.|+++
T Consensus        17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll-~~ga~~~~~d~~g~tpl~   95 (110)
T 2zgd_A           17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLL-EAGADVXAQDKFGKTAFD   95 (110)
T ss_dssp             -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHH
T ss_pred             ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCccccccCCCcHHH
Confidence            4557889999999999999999999999999999999999999999999999999999995 579999999999999999


Q ss_pred             cccccCcccccc
Q psy12580         84 LKTRSRDATLSR   95 (239)
Q Consensus        84 ~a~~~~~~~~~~   95 (239)
                      +|...+...+.+
T Consensus        96 ~A~~~~~~~~~~  107 (110)
T 2zgd_A           96 ISIDNGNEDLAE  107 (110)
T ss_dssp             HHHHHTCHHHHH
T ss_pred             HHHHcCCHHHHH
Confidence            998877655443

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.74  E-value=2.6e-18  Score=114.87  Aligned_cols=91  Identities=34%  Similarity=0.492  Sum_probs=84.2

Q ss_pred             cCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCccccc
Q psy12580          6 VTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWLGLK   85 (239)
Q Consensus         6 ~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a   85 (239)
                      .+|.+|+||||+||..++.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+ +.+++++..+..|.|++++|
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll-~~g~~~~~~d~~g~tpl~~A   82 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL-AKGADVNARSKDGNTPEHLA   82 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHT-TTTCCTTCCCTTCCCTTHHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHH-HcCCCCcccCCCCCCHHHHH
Confidence            57999999999999999999999999999999999999999999999999999999995 58999999999999999999


Q ss_pred             cccCcccccccc
Q psy12580         86 TRSRDATLSRHK   97 (239)
Q Consensus        86 ~~~~~~~~~~~~   97 (239)
                      ...+...+.+..
T Consensus        83 ~~~~~~~~~~~L   94 (115)
T 2l6b_A           83 KKNGHHEIVKLL   94 (115)
T ss_dssp             HTTTCHHHHHHH
T ss_pred             HHCCCHHHHHHH
Confidence            988877666544

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.74  E-value=5.9e-18  Score=120.39  Aligned_cols=90  Identities=40%  Similarity=0.532  Sum_probs=80.9

Q ss_pred             CcCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCc
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSW   81 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (239)
                      .++|.+|.+|+||||+|+..++.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+ +.|++++..+..|.||
T Consensus        66 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~ga~~~~~~~~g~t~  144 (165)
T 3twr_A           66 ADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLL-QHGADPTKKNRDGNTP  144 (165)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCT
T ss_pred             CCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCcccCCCCCCh
Confidence            478899999999999999999999999999999999999999999999999999999999995 5899999999999999


Q ss_pred             cccccccCcccc
Q psy12580         82 LGLKTRSRDATL   93 (239)
Q Consensus        82 l~~a~~~~~~~~   93 (239)
                      ++++.. ++..+
T Consensus       145 l~~a~~-~~~~i  155 (165)
T 3twr_A          145 LDLVKD-GDTDI  155 (165)
T ss_dssp             GGGSCT-TCHHH
T ss_pred             hHhHhc-CChHH
Confidence            998765 44333

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.73  E-value=9.3e-18  Score=125.84  Aligned_cols=93  Identities=24%  Similarity=0.243  Sum_probs=75.9

Q ss_pred             CcCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccc-cCCCC
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKIN-FKDQS   80 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~-~~~~t   80 (239)
                      .++|.+|..|+||||+||..|+.+++++|++.|+++|.+|..|+||||+|+..|+.+++++|+ +.|++++..+ ..|.|
T Consensus        45 ~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll-~~ga~~~~~~~~~g~t  123 (229)
T 2vge_A           45 NDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALV-QHGAAIFATTLSDGAT  123 (229)
T ss_dssp             SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH-TTTCCTTCCCSSTTCC
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCcccccCCCCCC
Confidence            367888888888888888888888888888888888888888888888888888888888884 5788888775 58888


Q ss_pred             ccccc--cccCcccccc
Q psy12580         81 WLGLK--TRSRDATLSR   95 (239)
Q Consensus        81 ~l~~a--~~~~~~~~~~   95 (239)
                      |+++|  ...+...+.+
T Consensus       124 pL~~A~a~~~~~~~~v~  140 (229)
T 2vge_A          124 AFEKCDPYREGYADCAT  140 (229)
T ss_dssp             TGGGCCTTSTTHHHHHH
T ss_pred             HHHHHHHHhcChHHHHH
Confidence            88887  5555544433

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.73  E-value=9.3e-19  Score=127.03  Aligned_cols=127  Identities=12%  Similarity=0.030  Sum_probs=92.8

Q ss_pred             cCccCC-CCCchHHHHHHHhCC----HHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCC------HhHHHHHHhhcCCcc
Q psy12580          3 YVSVTD-DHGFSPLHWACKEGH----LKLVELLLQRGARVNATNRGDDTPLHLAAAHGH------LDIVRLLAVQNNQDL   71 (239)
Q Consensus         3 ~v~~~~-~~g~tpl~~a~~~~~----~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~------~~~v~~Ll~~~~~~~   71 (239)
                      ++|..| ..|+||||+|+.+++    .+++++|++.|+++|.+|..|+||||+|+..|+      .+++++|+ +.|+++
T Consensus        29 ~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll-~~Gadi  107 (186)
T 3t8k_A           29 GYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFL-EKGADI  107 (186)
T ss_dssp             SSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHH-HTTCCS
T ss_pred             CcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHH-HCCCCC
Confidence            345556 679999999998874    999999999999999999999999999999887      56788884 589999


Q ss_pred             cccccCCC-CccccccccCcc-----ccccccCC-CCCCCcccccccCCCCCCceeeccCCCceeeeee
Q psy12580         72 TKINFKDQ-SWLGLKTRSRDA-----TLSRHKGI-SLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKIL  133 (239)
Q Consensus        72 ~~~~~~~~-t~l~~a~~~~~~-----~~~~~~~~-~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~vk~~  133 (239)
                      +..|..|. ||+++|...+..     .+.+.... ...++...+.-|..+   ...+...+...+++.+
T Consensus       108 n~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~Tp---L~~A~~~~~~~~v~~L  173 (186)
T 3t8k_A          108 TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTA---LEFVKRCQKPIALKMM  173 (186)
T ss_dssp             SSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCH---HHHHHTTTCHHHHHHH
T ss_pred             CccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCH---HHHHHHcCCHHHHHHH
Confidence            99999999 999988874332     23332222 334455555555443   3344445566666555

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.73  E-value=7.4e-18  Score=120.41  Aligned_cols=94  Identities=37%  Similarity=0.558  Sum_probs=84.2

Q ss_pred             CcCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCc
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSW   81 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (239)
                      .++|.+|..|+||||+|+..|+.+++++|++.|++++..|..|+||||+|+..|+.+++++|+ +.+++++..+..|.|+
T Consensus        38 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll-~~g~~~~~~~~~g~t~  116 (169)
T 2y1l_E           38 ADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLL-KNGADVNANDMEGHTP  116 (169)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCH
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCCCCCCCCCH
Confidence            478889999999999999999999999999999999999999999999999999999999995 5889999999999999


Q ss_pred             cccccccCccccccc
Q psy12580         82 LGLKTRSRDATLSRH   96 (239)
Q Consensus        82 l~~a~~~~~~~~~~~   96 (239)
                      +++|...++..+.+.
T Consensus       117 L~~A~~~~~~~~v~~  131 (169)
T 2y1l_E          117 LHLAAMFGHLEIVEV  131 (169)
T ss_dssp             HHHHHHTTCHHHHHH
T ss_pred             HHHHHHcCCHHHHHH
Confidence            999988887666654

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.73  E-value=1.2e-18  Score=122.98  Aligned_cols=86  Identities=19%  Similarity=0.145  Sum_probs=40.8

Q ss_pred             cCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCC-cccc
Q psy12580          6 VTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQS-WLGL   84 (239)
Q Consensus         6 ~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t-~l~~   84 (239)
                      ..+..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+ .|+.+++++|+ +.|++++..+..|.| ++++
T Consensus         7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll-~~g~~~~~~d~~g~ttpL~~   84 (156)
T 1bi7_B            7 SSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLL-LHGAEPNCADPATLTRPVHD   84 (156)
T ss_dssp             ---CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHH-TTTCCCCCCCTTTCCCHHHH
T ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHH-HcCCCCCCcCCCCCcHHHHH
Confidence            34444555555555555555555555555555555555555555543 44555555542 244444444444444 5554


Q ss_pred             ccccCcccc
Q psy12580         85 KTRSRDATL   93 (239)
Q Consensus        85 a~~~~~~~~   93 (239)
                      |...++..+
T Consensus        85 A~~~~~~~~   93 (156)
T 1bi7_B           85 AAREGFLDT   93 (156)
T ss_dssp             HHHHTCHHH
T ss_pred             HHHCCCHHH
Confidence            444444333

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.73  E-value=1.2e-17  Score=120.46  Aligned_cols=94  Identities=26%  Similarity=0.291  Sum_probs=86.7

Q ss_pred             CcCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCc
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSW   81 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (239)
                      .++|.+|..|+||||+|+..++.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+ +.|++++..+..|.||
T Consensus        63 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll-~~ga~~~~~~~~g~tp  141 (179)
T 3f6q_A           63 ARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLV-ANGALVSICNKYGEMP  141 (179)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCSSBCCTTSCCG
T ss_pred             CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHH-HCCCCcchhccCCCCc
Confidence            478999999999999999999999999999999999999999999999999999999999995 5899999999999999


Q ss_pred             cccccccCccccccc
Q psy12580         82 LGLKTRSRDATLSRH   96 (239)
Q Consensus        82 l~~a~~~~~~~~~~~   96 (239)
                      +++|...+...+.+.
T Consensus       142 l~~A~~~~~~~~~~~  156 (179)
T 3f6q_A          142 VDKAKAPLRELLRER  156 (179)
T ss_dssp             GGGSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999987766655543

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.73  E-value=6.1e-18  Score=130.43  Aligned_cols=92  Identities=16%  Similarity=0.279  Sum_probs=85.3

Q ss_pred             CccCCCCCchHHHHHHHh---CCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCC
Q psy12580          4 VSVTDDHGFSPLHWACKE---GHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQS   80 (239)
Q Consensus         4 v~~~~~~g~tpl~~a~~~---~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t   80 (239)
                      ++..|..|+||||+|+..   ++.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+ +.|++++..|..|.|
T Consensus       162 l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~~v~~Ll-~~gad~~~~d~~g~t  240 (278)
T 1dcq_A          162 LANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL-RGKASIEIANESGET  240 (278)
T ss_dssp             CSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCC
T ss_pred             ccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCCccCCCCC
Confidence            667799999999999999   9999999999999999999999999999999999999999995 599999999999999


Q ss_pred             ccccccccCccccccc
Q psy12580         81 WLGLKTRSRDATLSRH   96 (239)
Q Consensus        81 ~l~~a~~~~~~~~~~~   96 (239)
                      |+++|...++..+.+.
T Consensus       241 pL~~A~~~~~~~~v~~  256 (278)
T 1dcq_A          241 PLDIAKRLKHEHCEEL  256 (278)
T ss_dssp             HHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHcCCHHHHHH
Confidence            9999998887766553

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.73  E-value=1.1e-17  Score=126.32  Aligned_cols=91  Identities=26%  Similarity=0.390  Sum_probs=72.1

Q ss_pred             cCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCC-Cc
Q psy12580          3 YVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQ-SW   81 (239)
Q Consensus         3 ~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~-t~   81 (239)
                      |+|.+|.+|+||||+||..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+ +.|++++..+..+. |+
T Consensus        62 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll-~~ga~~~~~~~~~~~t~  140 (239)
T 1ycs_B           62 DPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLV-ESGAAVFAMTYSDMQTA  140 (239)
T ss_dssp             SCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCSSSCCCH
T ss_pred             CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCcceecCCCCcch
Confidence            67888888888888888888888888888888888888888888888888888888888884 57888888777766 88


Q ss_pred             cccc--cccCccccc
Q psy12580         82 LGLK--TRSRDATLS   94 (239)
Q Consensus        82 l~~a--~~~~~~~~~   94 (239)
                      ++++  ...++..+.
T Consensus       141 l~~a~~~~~g~~~~~  155 (239)
T 1ycs_B          141 ADKCEEMEEGYTQCS  155 (239)
T ss_dssp             HHHCCSSSTTCCCHH
T ss_pred             HHHHHHhhhccHHHH
Confidence            8876  334444433

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.72  E-value=1.2e-17  Score=118.29  Aligned_cols=92  Identities=22%  Similarity=0.240  Sum_probs=70.2

Q ss_pred             CcCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCc
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSW   81 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (239)
                      .++|.+|..|+||||+|+. |+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+ +.+.+++..+..|.||
T Consensus        29 ~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~  106 (162)
T 1ihb_A           29 VNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLL-EFQADVNIEDNEGNLP  106 (162)
T ss_dssp             CCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTSCCH
T ss_pred             CCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCCcCCCCCCH
Confidence            3567777778888888777 8888888888888888888888888888888888888887774 4677777777777888


Q ss_pred             cccccccCcccccc
Q psy12580         82 LGLKTRSRDATLSR   95 (239)
Q Consensus        82 l~~a~~~~~~~~~~   95 (239)
                      +++|...++..+.+
T Consensus       107 L~~A~~~~~~~~v~  120 (162)
T 1ihb_A          107 LHLAAKEGHLRVVE  120 (162)
T ss_dssp             HHHHHHTTCHHHHH
T ss_pred             HHHHHHcCCHHHHH
Confidence            88777777665554

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.72  E-value=2.2e-17  Score=106.07  Aligned_cols=67  Identities=48%  Similarity=0.803  Sum_probs=63.2

Q ss_pred             CcCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCC
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQ   69 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~   69 (239)
                      .++|.+|.+|+||||+|+..++.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+ +.|+
T Consensus        26 ~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll-~~ga   92 (93)
T 1n0q_A           26 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL-EAGA   92 (93)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTC
T ss_pred             CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHH-HcCC
Confidence            478999999999999999999999999999999999999999999999999999999999995 4664

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.72  E-value=1.2e-17  Score=126.40  Aligned_cols=85  Identities=27%  Similarity=0.336  Sum_probs=77.5

Q ss_pred             CcCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccC-CCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCC
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATN-RGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQS   80 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~-~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t   80 (239)
                      .++|.+|..|+||||+||..|+.+++++|++.|+++|.++ ..|+||||+|+..|+.+++++|+ +.|++++..+..|.|
T Consensus        68 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll-~~ga~~~~~d~~g~t  146 (244)
T 3ui2_A           68 RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALV-ELGADIEVEDERGLT  146 (244)
T ss_dssp             CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTCCC
T ss_pred             CCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHH-HCCCCCCCCCCCCCc
Confidence            3788999999999999999999999999999999999998 78999999999999999999995 579999999999999


Q ss_pred             ccccccc
Q psy12580         81 WLGLKTR   87 (239)
Q Consensus        81 ~l~~a~~   87 (239)
                      |+++|..
T Consensus       147 ~l~~A~~  153 (244)
T 3ui2_A          147 ALELARE  153 (244)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988764

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.72  E-value=8.4e-18  Score=120.39  Aligned_cols=94  Identities=28%  Similarity=0.444  Sum_probs=86.5

Q ss_pred             cCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCcc
Q psy12580          3 YVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWL   82 (239)
Q Consensus         3 ~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l   82 (239)
                      ++|.+|..|+||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+ +.+.+++..+..|.|++
T Consensus        28 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L  106 (172)
T 3v30_A           28 LVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLL-ERDVDINIYDWNGGTPL  106 (172)
T ss_dssp             GGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH-TTTCCTTCCCTTSCCHH
T ss_pred             cccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCHHHHHHHH-HcCCCCCCCCCCCCCHH
Confidence            37889999999999999999999999999999999999999999999999999999999995 58999999999999999


Q ss_pred             ccccccCcccccccc
Q psy12580         83 GLKTRSRDATLSRHK   97 (239)
Q Consensus        83 ~~a~~~~~~~~~~~~   97 (239)
                      ++|...++..+.+..
T Consensus       107 ~~A~~~~~~~~v~~L  121 (172)
T 3v30_A          107 LYAVRGNHVKCVEAL  121 (172)
T ss_dssp             HHHHHTTCHHHHHHH
T ss_pred             HHHHHcCCHHHHHHH
Confidence            999988877666543

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.72  E-value=1e-17  Score=119.39  Aligned_cols=94  Identities=29%  Similarity=0.522  Sum_probs=85.7

Q ss_pred             CcCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCc
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSW   81 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (239)
                      .++|.+|..|+||||+|+..|+.+++++|++.|++++..+..|.||||.|+..|+.+++++|+ +.+.+++..+..|.||
T Consensus        27 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~  105 (167)
T 3v31_A           27 NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLL-DCGVDVNEYDWNGGTP  105 (167)
T ss_dssp             SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH-HHTCCTTCCCTTSCCH
T ss_pred             CCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHH-HCCCCCCcCCCCCCCH
Confidence            368899999999999999999999999999999999999999999999999999999999995 5899999999999999


Q ss_pred             cccccccCccccccc
Q psy12580         82 LGLKTRSRDATLSRH   96 (239)
Q Consensus        82 l~~a~~~~~~~~~~~   96 (239)
                      +++|...+...+.+.
T Consensus       106 L~~A~~~~~~~~v~~  120 (167)
T 3v31_A          106 LLYAVHGNHVKCVKM  120 (167)
T ss_dssp             HHHHHHTTCHHHHHH
T ss_pred             HHHHHHcCCHHHHHH
Confidence            999988887666554

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.72  E-value=8.8e-18  Score=129.48  Aligned_cols=93  Identities=23%  Similarity=0.296  Sum_probs=79.3

Q ss_pred             cCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCcc
Q psy12580          3 YVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWL   82 (239)
Q Consensus         3 ~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l   82 (239)
                      +++..|..|+||||+|+..|+.+++++|++.|+++|.+|..|+||||+|+..|+.+++++|+...|++++..|..|.||+
T Consensus       175 ~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL  254 (276)
T 4hbd_A          175 INAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTAL  254 (276)
T ss_dssp             TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHH
T ss_pred             CccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHH
Confidence            45667788999999999999999999999999999999999999999999999999999886557888888899999999


Q ss_pred             ccccccCcccccc
Q psy12580         83 GLKTRSRDATLSR   95 (239)
Q Consensus        83 ~~a~~~~~~~~~~   95 (239)
                      ++|...++..+.+
T Consensus       255 ~~A~~~g~~~iv~  267 (276)
T 4hbd_A          255 MVALDAGQSEIAS  267 (276)
T ss_dssp             HHHHHHTCHHHHH
T ss_pred             HHHHHcCCHHHHH
Confidence            8888877765544

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.72  E-value=6.2e-19  Score=127.95  Aligned_cols=95  Identities=13%  Similarity=0.101  Sum_probs=84.1

Q ss_pred             CcCccCCCCCchHHHHHHHhCC------HHHHHHHHHCCCCCCccCCCCC-CHHHHHHHcCC-----HhHHHHHHhhcCC
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGH------LKLVELLLQRGARVNATNRGDD-TPLHLAAAHGH-----LDIVRLLAVQNNQ   69 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~------~~~~~~ll~~g~~~~~~~~~g~-t~l~~a~~~g~-----~~~v~~Ll~~~~~   69 (239)
                      .|||.+|.+|+||||+|+..++      .+++++|+++|+++|.+|..|+ ||||+|+..+.     .+++++|+.+.|+
T Consensus        66 advn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~ga  145 (186)
T 3t8k_A           66 ADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGL  145 (186)
T ss_dssp             CCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTC
T ss_pred             CCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCC
Confidence            4899999999999999999987      6889999999999999999999 99999998544     5688888544899


Q ss_pred             cccccccCCCCccccccccCccccccc
Q psy12580         70 DLTKINFKDQSWLGLKTRSRDATLSRH   96 (239)
Q Consensus        70 ~~~~~~~~~~t~l~~a~~~~~~~~~~~   96 (239)
                      +++..|..|.||+++|...+.....+.
T Consensus       146 d~~~~d~~G~TpL~~A~~~~~~~~v~~  172 (186)
T 3t8k_A          146 QLLIKDKWGLTALEFVKRCQKPIALKM  172 (186)
T ss_dssp             CTTCCCTTSCCHHHHHHTTTCHHHHHH
T ss_pred             CCcccCCCCCCHHHHHHHcCCHHHHHH
Confidence            999999999999999998887765553

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.72  E-value=7.7e-18  Score=125.63  Aligned_cols=88  Identities=33%  Similarity=0.455  Sum_probs=50.4

Q ss_pred             cCccCCCCCchHHHHHHHhCCHHHHHHHHHC-CCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCc
Q psy12580          3 YVSVTDDHGFSPLHWACKEGHLKLVELLLQR-GARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSW   81 (239)
Q Consensus         3 ~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~-g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (239)
                      ++|.+|..|+||||+||..|+.+++++|++. |++++.+|..|+||||+|+..|+.+++++|+ +.|++++..+..|.|+
T Consensus        98 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll-~~ga~~~~~~~~g~t~  176 (222)
T 3ehr_A           98 GVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLL-AKGARTDLRNIEKKLA  176 (222)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHH-HHTCCSCCCCTTSCCH
T ss_pred             CccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCccccCCCCCH
Confidence            4555555566666666666666666655555 5556655555666666666555555555553 3455555555555555


Q ss_pred             cccccccCcc
Q psy12580         82 LGLKTRSRDA   91 (239)
Q Consensus        82 l~~a~~~~~~   91 (239)
                      +++|...+..
T Consensus       177 l~~A~~~~~~  186 (222)
T 3ehr_A          177 FDMATNAACA  186 (222)
T ss_dssp             HHHCCSHHHH
T ss_pred             HHHhcchhHH
Confidence            5555544433

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.71  E-value=1.6e-17  Score=118.96  Aligned_cols=93  Identities=23%  Similarity=0.211  Sum_probs=86.7

Q ss_pred             CcCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCc
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSW   81 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (239)
                      .++|.+|..|+||||+|+..++.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+ +.|++++..+..|.|+
T Consensus        60 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~ga~~~~~~~~g~t~  138 (172)
T 3v30_A           60 ADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALL-ARGADLTTEADSGYTP  138 (172)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCH
T ss_pred             CCchhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCccccCCCCCCH
Confidence            478999999999999999999999999999999999999999999999999999999999995 5899999999999999


Q ss_pred             cccccccCcccccc
Q psy12580         82 LGLKTRSRDATLSR   95 (239)
Q Consensus        82 l~~a~~~~~~~~~~   95 (239)
                      +++|...+...+.+
T Consensus       139 l~~A~~~~~~~~~~  152 (172)
T 3v30_A          139 MDLAVALGYRKVQQ  152 (172)
T ss_dssp             HHHHHHHTCHHHHH
T ss_pred             HHHHHHhCcHHHHH
Confidence            99998888766554

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.71  E-value=1.8e-17  Score=120.82  Aligned_cols=128  Identities=20%  Similarity=0.243  Sum_probs=97.6

Q ss_pred             CcCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCc
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSW   81 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (239)
                      .++|.+|..|+||||+|+..++.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+ +.+++++..+..|.||
T Consensus        59 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~  137 (192)
T 2rfm_A           59 DKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLL-EHGANVNDRNLEGETP  137 (192)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH-HTTCCSSCCCTTCCCH
T ss_pred             cccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH-HCCCCCCCCCCCCCCH
Confidence            368889999999999999999999999999999999999999999999999999999999995 5899999999999999


Q ss_pred             cccccccCccccccccCCCCCCCcccccccCCCCCCceeeccCCCceeeeee
Q psy12580         82 LGLKTRSRDATLSRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKIL  133 (239)
Q Consensus        82 l~~a~~~~~~~~~~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~vk~~  133 (239)
                      +++|...+...+.+..--...++...+.-|..+   ...+...+...+++.+
T Consensus       138 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~---l~~A~~~~~~~~v~~L  186 (192)
T 2rfm_A          138 LIVASKYGRSEIVKKLLELGADISARDLTGLTA---EASARIFGRQEVIKIF  186 (192)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBH---HHHHHHTTCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCH---HHHHHHhCcHHHHHHH
Confidence            999988887776664432233333333333322   3334444444444433

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.71  E-value=2.2e-17  Score=117.97  Aligned_cols=93  Identities=37%  Similarity=0.563  Sum_probs=85.9

Q ss_pred             CcCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCc
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSW   81 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (239)
                      .++|.+|..|+||||+|+..++.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+ +.|++++..+..|.|+
T Consensus        71 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~  149 (169)
T 2y1l_E           71 ADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLL-KNGADVNAQDKFGKTA  149 (169)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCH
T ss_pred             CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCCcCCCCCCH
Confidence            368899999999999999999999999999999999999999999999999999999999995 5899999999999999


Q ss_pred             cccccccCcccccc
Q psy12580         82 LGLKTRSRDATLSR   95 (239)
Q Consensus        82 l~~a~~~~~~~~~~   95 (239)
                      +++|...++..+.+
T Consensus       150 l~~A~~~~~~~~~~  163 (169)
T 2y1l_E          150 FDISIDNGNEDLAE  163 (169)
T ss_dssp             HHHHHHTTCHHHHH
T ss_pred             HHHHHHhCCHHHHH
Confidence            99998877765543

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.71  E-value=2e-17  Score=121.30  Aligned_cols=95  Identities=25%  Similarity=0.348  Sum_probs=88.4

Q ss_pred             CcCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCc
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSW   81 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (239)
                      .++|.+|.+|+||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+...+.+++..+..|.|+
T Consensus        30 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~  109 (201)
T 3hra_A           30 YQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNA  109 (201)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCS
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcH
Confidence            37899999999999999999999999999999999999999999999999999999999999877888999999999999


Q ss_pred             cccccccCccccccc
Q psy12580         82 LGLKTRSRDATLSRH   96 (239)
Q Consensus        82 l~~a~~~~~~~~~~~   96 (239)
                      +++|...++..+.+.
T Consensus       110 L~~A~~~~~~~~v~~  124 (201)
T 3hra_A          110 LIPAAEKGHIDNVKL  124 (201)
T ss_dssp             HHHHHHTTCHHHHHH
T ss_pred             HHHHHHcCCHHHHHH
Confidence            999998887766553

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.71  E-value=1.2e-17  Score=121.75  Aligned_cols=127  Identities=15%  Similarity=0.103  Sum_probs=99.0

Q ss_pred             cCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCcc
Q psy12580          3 YVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWL   82 (239)
Q Consensus         3 ~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l   82 (239)
                      .+|.+|..|+||||+||..|+.+++++|++.|++++..|..|+||||+|+..|+.+++++|+ +.+.+++..+..|.||+
T Consensus        27 ~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L  105 (192)
T 2rfm_A           27 LRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLL-SKGSNVNTKDFSGKTPL  105 (192)
T ss_dssp             HHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HHTCCTTCCCTTSCCHH
T ss_pred             HHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHH-HCCCCCCCCCCCCCcHH
Confidence            47889999999999999999999999999999999999999999999999999999999995 57999999999999999


Q ss_pred             ccccccCccccccccCCCCCCCcccccccCCCCCCceeeccCCCceeeeee
Q psy12580         83 GLKTRSRDATLSRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKIL  133 (239)
Q Consensus        83 ~~a~~~~~~~~~~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~vk~~  133 (239)
                      ++|...+...+.+..--...++...+.-|...   .+.+...+...+++.+
T Consensus       106 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~---L~~A~~~~~~~~v~~L  153 (192)
T 2rfm_A          106 MWSIIFGYSEMSYFLLEHGANVNDRNLEGETP---LIVASKYGRSEIVKKL  153 (192)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCH---HHHHHHHTCHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCH---HHHHHHcCCHHHHHHH
Confidence            99998888776664322233333333333332   3334444444445444

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.71  E-value=1.6e-17  Score=116.98  Aligned_cols=92  Identities=30%  Similarity=0.460  Sum_probs=84.3

Q ss_pred             CcCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCc
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSW   81 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (239)
                      .++|.+|..|+||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+. . .+++..+..|.||
T Consensus        59 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~-~~~~~~~~~g~t~  136 (156)
T 1bd8_A           59 ASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA-E-SDLHRRDARGLTP  136 (156)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHT-T-SCTTCCCTTSCCH
T ss_pred             CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHh-c-cCCCCcCCCCCCH
Confidence            4789999999999999999999999999999999999999999999999999999999999965 4 8999999999999


Q ss_pred             cccccccCcccccc
Q psy12580         82 LGLKTRSRDATLSR   95 (239)
Q Consensus        82 l~~a~~~~~~~~~~   95 (239)
                      +++|...++..+.+
T Consensus       137 l~~A~~~~~~~~v~  150 (156)
T 1bd8_A          137 LELALQRGAQDLVD  150 (156)
T ss_dssp             HHHHHHSCCHHHHH
T ss_pred             HHHHHHcCcHHHHH
Confidence            99998887765544

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.71  E-value=2.3e-17  Score=115.84  Aligned_cols=93  Identities=29%  Similarity=0.399  Sum_probs=83.0

Q ss_pred             CcCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCc
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSW   81 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (239)
                      .++|.+|..|+||||+|+..++.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+ +.|++++..+..|.||
T Consensus        58 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~ga~~~~~~~~g~t~  136 (153)
T 1awc_B           58 VSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLI-KYGADVHTQSKFCKTA  136 (153)
T ss_dssp             CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCH
T ss_pred             CCCCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCccccCCCCCCH
Confidence            468889999999999999999999999999999999999999999999999999999999995 5799999999999999


Q ss_pred             cccccccCcccccc
Q psy12580         82 LGLKTRSRDATLSR   95 (239)
Q Consensus        82 l~~a~~~~~~~~~~   95 (239)
                      +++|...++..+.+
T Consensus       137 l~~A~~~~~~~i~~  150 (153)
T 1awc_B          137 FDISIDNGNEDLAE  150 (153)
T ss_dssp             HHHHHHTTCHHHHH
T ss_pred             HHHHHHcCCHHHHH
Confidence            99988877665543

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.70  E-value=3.7e-17  Score=110.70  Aligned_cols=91  Identities=40%  Similarity=0.649  Sum_probs=66.6

Q ss_pred             cCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCcc
Q psy12580          3 YVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWL   82 (239)
Q Consensus         3 ~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l   82 (239)
                      ++|.+|..|+||||+|+..++.+++++|++.|++++.+|..|.||||.|+..|+.+++++|+ +.+.+++..+..|.|++
T Consensus        27 ~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll-~~g~~~~~~~~~g~t~l  105 (126)
T 1n0r_A           27 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL-EAGADVNAKDKNGRTPL  105 (126)
T ss_dssp             CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHH
T ss_pred             CCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcChHHHHHHHH-HcCCCCcccCCCCCCHH
Confidence            56677777777777777777777777777777777777777777777777777777777774 46777777777777777


Q ss_pred             ccccccCccccc
Q psy12580         83 GLKTRSRDATLS   94 (239)
Q Consensus        83 ~~a~~~~~~~~~   94 (239)
                      ++|...+...+.
T Consensus       106 ~~A~~~~~~~~~  117 (126)
T 1n0r_A          106 HLAARNGHLEVV  117 (126)
T ss_dssp             HHHHHTTCHHHH
T ss_pred             HHHHHcCcHHHH
Confidence            777666554433

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.70  E-value=1.8e-17  Score=127.65  Aligned_cols=95  Identities=26%  Similarity=0.343  Sum_probs=87.3

Q ss_pred             cCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCC-CCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCc
Q psy12580          3 YVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRG-DDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSW   81 (239)
Q Consensus         3 ~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~-g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (239)
                      ++|.+|..|+||||+|+..|+.+++++|++.|++++.++.. |+||||+|+..|+.+++++|+ +.|++++..+..|.||
T Consensus       150 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll-~~gad~~~~d~~g~tp  228 (282)
T 1oy3_D          150 QLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLL-KAGADPTARMYGGRTP  228 (282)
T ss_dssp             GTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCH
T ss_pred             cCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHH-HcCCCCcccccCCCCH
Confidence            58899999999999999999999999999999999999865 999999999999999999995 5799999999999999


Q ss_pred             cccccccCccccccccC
Q psy12580         82 LGLKTRSRDATLSRHKG   98 (239)
Q Consensus        82 l~~a~~~~~~~~~~~~~   98 (239)
                      +++|...++..+.+...
T Consensus       229 L~~A~~~~~~~~v~~Ll  245 (282)
T 1oy3_D          229 LGSALLRPNPILARLLR  245 (282)
T ss_dssp             HHHHHTSSCHHHHHHHH
T ss_pred             HHHHHHcCCcHHHHHHH
Confidence            99999888877766543

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.70  E-value=2.5e-17  Score=126.43  Aligned_cols=94  Identities=33%  Similarity=0.460  Sum_probs=73.6

Q ss_pred             CcCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCc
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSW   81 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (239)
                      .|||.+|.+|+||||+||..|+.+++++|++.|++++..+..|.||++.|+..++.+++++|+ +.|++++..+..|.||
T Consensus        77 advn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll-~~g~~~n~~d~~g~Tp  155 (269)
T 4b93_B           77 LGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLL-DSNAKPNKKDLSGNTP  155 (269)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH-HTTCCSCCCCTTCCCH
T ss_pred             CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHH-HCCCCCCCCCCCCCCH
Confidence            478889999999999999999888888888888888777777777777777777777777774 4677777777777777


Q ss_pred             cccccccCccccccc
Q psy12580         82 LGLKTRSRDATLSRH   96 (239)
Q Consensus        82 l~~a~~~~~~~~~~~   96 (239)
                      +++|...++..+.+.
T Consensus       156 L~~A~~~g~~~~v~~  170 (269)
T 4b93_B          156 LIYACSGGHHELVAL  170 (269)
T ss_dssp             HHHHHHTTCGGGHHH
T ss_pred             HHHHHHCCCHHHHHH
Confidence            777777776665553

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.70  E-value=2.8e-17  Score=125.00  Aligned_cols=128  Identities=19%  Similarity=0.181  Sum_probs=87.0

Q ss_pred             cCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCcc
Q psy12580          3 YVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWL   82 (239)
Q Consensus         3 ~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l   82 (239)
                      +++.+|..|+||||+|+..++.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+ +.|++++..+..|.||+
T Consensus       116 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll-~~ga~~~~~~~~g~tpL  194 (253)
T 1yyh_A          116 DLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLL-KNGANKDMQNNREETPL  194 (253)
T ss_dssp             CTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTSCCHH
T ss_pred             CccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCCcCCCCCCHH
Confidence            56777778888888888888888888888888888888888888888888888888888774 46777777777888888


Q ss_pred             ccccccCccccccccCCCCCCCcccccccCCCCCCceeeccCCCceeeeeee
Q psy12580         83 GLKTRSRDATLSRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILA  134 (239)
Q Consensus        83 ~~a~~~~~~~~~~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~vk~~~  134 (239)
                      ++|...+...+.+...-...+....+.-|+.+   ...+..++...+++.+.
T Consensus       195 ~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tp---l~~A~~~g~~~i~~~l~  243 (253)
T 1yyh_A          195 FLAAREGSYETAKVLLDHFANRDITDHMDRLP---RDIAQERMHHDIVRLLD  243 (253)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCH---HHHHHHTTCHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHcCCCccccccCCCCH---HHHHHHcCCHHHHHHHH
Confidence            87777777665554333333333333333332   33444555555554443

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.70  E-value=2.7e-17  Score=117.18  Aligned_cols=93  Identities=23%  Similarity=0.265  Sum_probs=86.4

Q ss_pred             CcCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCc
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSW   81 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (239)
                      .++|.+|..|+||||+|+..++.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+ +.|++++..+..|.||
T Consensus        60 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~  138 (167)
T 3v31_A           60 ADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLL-ESGADPTIETDSGYNS  138 (167)
T ss_dssp             CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCH
T ss_pred             CCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCCcCCCCCCH
Confidence            478899999999999999999999999999999999999999999999999999999999995 5899999999999999


Q ss_pred             cccccccCcccccc
Q psy12580         82 LGLKTRSRDATLSR   95 (239)
Q Consensus        82 l~~a~~~~~~~~~~   95 (239)
                      +++|...+...+.+
T Consensus       139 l~~A~~~~~~~~~~  152 (167)
T 3v31_A          139 MDLAVALGYRSVQQ  152 (167)
T ss_dssp             HHHHHHHTCHHHHH
T ss_pred             HHHHHHcCcHHHHH
Confidence            99998887766554

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.70  E-value=2.7e-17  Score=111.20  Aligned_cols=90  Identities=24%  Similarity=0.304  Sum_probs=80.0

Q ss_pred             CCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCcccccc
Q psy12580          7 TDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWLGLKT   86 (239)
Q Consensus         7 ~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~   86 (239)
                      .+..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+ +.+++++..+..|.||+++|.
T Consensus         3 ~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~d~~g~tpL~~A~   81 (123)
T 3aaa_C            3 LGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLL-LKGADINAPDKHHITPLLSAV   81 (123)
T ss_dssp             ----CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHH-TTTCCTTCCCTTSCCHHHHHH
T ss_pred             cccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHH-HcCCCCCcCCCCCCCHHHHHH
Confidence            3567899999999999999999999999999999999999999999999999999995 689999999999999999999


Q ss_pred             ccCcccccccc
Q psy12580         87 RSRDATLSRHK   97 (239)
Q Consensus        87 ~~~~~~~~~~~   97 (239)
                      ..++..+.+..
T Consensus        82 ~~~~~~~v~~L   92 (123)
T 3aaa_C           82 YEGHVSCVKLL   92 (123)
T ss_dssp             HHTCHHHHHHH
T ss_pred             HcCCHHHHHHH
Confidence            88877666543

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.69  E-value=1.1e-16  Score=119.66  Aligned_cols=111  Identities=17%  Similarity=0.166  Sum_probs=88.6

Q ss_pred             CcCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcC-CcccccccCCCC
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNN-QDLTKINFKDQS   80 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~-~~~~~~~~~~~t   80 (239)
                      .+++.+|..|+||||+|+..++.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+. .+ .+++..+..|.|
T Consensus        98 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~d~~g~t  176 (228)
T 2dzn_A           98 PDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG-LGKSAVNWQDKQGWT  176 (228)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHT-TTCCCSCCCCTTSCC
T ss_pred             cccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHh-cCcccccCcCCCCCC
Confidence            4678889999999999999999999999999999999999999999999999999999999954 55 888888999999


Q ss_pred             ccccccccCccccccccC-CCCCCCcccccccCC
Q psy12580         81 WLGLKTRSRDATLSRHKG-ISLNDLSLHTKISSG  113 (239)
Q Consensus        81 ~l~~a~~~~~~~~~~~~~-~~~~~~~~~~~ig~g  113 (239)
                      |+++|...++..+.+..- -...+....+.-|..
T Consensus       177 ~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t  210 (228)
T 2dzn_A          177 PLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAK  210 (228)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCB
T ss_pred             HHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCc
Confidence            999988888776665433 223334444433443

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.68  E-value=1.3e-16  Score=120.07  Aligned_cols=87  Identities=32%  Similarity=0.415  Sum_probs=44.2

Q ss_pred             ccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCC-CCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCccc
Q psy12580          5 SVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNR-GDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWLG   83 (239)
Q Consensus         5 ~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~-~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l~   83 (239)
                      +..|..|+||||+|+..|+.+++++|++.|++++.++. .|+||||+|+..|+.+++++|+ +.|++++..+..|.||++
T Consensus       111 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll-~~ga~~~~~~~~g~tpl~  189 (236)
T 1ikn_D          111 KATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLL-KCGADVNRVTYQGYSPYQ  189 (236)
T ss_dssp             GCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHH-TTTCCSCCCCTTCCCGGG
T ss_pred             hccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCcccCCCCCHHH
Confidence            44444555555555555555555555555555555554 5555555555555555555552 345555555555555555


Q ss_pred             cccccCccc
Q psy12580         84 LKTRSRDAT   92 (239)
Q Consensus        84 ~a~~~~~~~   92 (239)
                      +|...++..
T Consensus       190 ~A~~~~~~~  198 (236)
T 1ikn_D          190 LTWGRPSTR  198 (236)
T ss_dssp             GCTTSSCHH
T ss_pred             HHHccCchH
Confidence            554444433

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.68  E-value=4.7e-17  Score=108.69  Aligned_cols=80  Identities=38%  Similarity=0.607  Sum_probs=73.1

Q ss_pred             CcCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCc
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSW   81 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (239)
                      .++|.+|..|+||||+|+..++.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+ +.|++++..+..+.++
T Consensus        33 ~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll-~~ga~~n~~~~~~~~~  111 (115)
T 2l6b_A           33 ADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLD-AKGADVNARSWGSSHH  111 (115)
T ss_dssp             CCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHTTTCHHHHHHHH-TTSSSHHHHSCCCC--
T ss_pred             CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHH-HcCCCCCcCCcccccc
Confidence            478999999999999999999999999999999999999999999999999999999999995 6899999998888776


Q ss_pred             c
Q psy12580         82 L   82 (239)
Q Consensus        82 l   82 (239)
                      .
T Consensus       112 ~  112 (115)
T 2l6b_A          112 H  112 (115)
T ss_dssp             -
T ss_pred             c
Confidence            3

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.68  E-value=3.2e-17  Score=116.09  Aligned_cols=93  Identities=28%  Similarity=0.393  Sum_probs=69.9

Q ss_pred             CcCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCc-ccccccCCCC
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQD-LTKINFKDQS   80 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~-~~~~~~~~~t   80 (239)
                      .++|.+|..|+||||+|+..++.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+. .+.+ ++..+..|.|
T Consensus        61 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~~g~t  139 (162)
T 1ihb_A           61 ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK-HTASNVGHRNHKGDT  139 (162)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-HSCCCTTCCCTTSCC
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-ccCCCCCCcCCCCCc
Confidence            3677777888888888888888888888888888888888888888888888888888888754 5554 5777777788


Q ss_pred             ccccccccCcccccc
Q psy12580         81 WLGLKTRSRDATLSR   95 (239)
Q Consensus        81 ~l~~a~~~~~~~~~~   95 (239)
                      |+++|...++..+.+
T Consensus       140 ~l~~A~~~~~~~~~~  154 (162)
T 1ihb_A          140 ACDLARLYGRNEVVS  154 (162)
T ss_dssp             HHHHHHHTTCHHHHH
T ss_pred             HHHHHHHcCCHHHHH
Confidence            887777666554443

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.67  E-value=7.6e-17  Score=120.47  Aligned_cols=128  Identities=21%  Similarity=0.244  Sum_probs=97.4

Q ss_pred             cCcc-CCCCCchHHHHHHHhCCHHHHHHHHHCC--CCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCC
Q psy12580          3 YVSV-TDDHGFSPLHWACKEGHLKLVELLLQRG--ARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQ   79 (239)
Q Consensus         3 ~v~~-~~~~g~tpl~~a~~~~~~~~~~~ll~~g--~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~   79 (239)
                      +++. +|..|+||||+|+..|+.+++++|++.|  ++++..+..|.||||.|+..|+.+++++|+ +.|.+++..+..|.
T Consensus        63 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll-~~g~~~~~~~~~g~  141 (228)
T 2dzn_A           63 NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLI-ENGASVRIKDKFNQ  141 (228)
T ss_dssp             CGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH-HTTCCSCCCCTTSC
T ss_pred             cccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHH-HcCCCccccCCCCC
Confidence            4555 8899999999999999999999999998  899999999999999999999999999995 57999999999999


Q ss_pred             CccccccccCccccccccCCCC-CCCcccccccCCCCCCceeeccCCCceeeeeee
Q psy12580         80 SWLGLKTRSRDATLSRHKGISL-NDLSLHTKISSGPNGDTWRGRWQKNDIVAKILA  134 (239)
Q Consensus        80 t~l~~a~~~~~~~~~~~~~~~~-~~~~~~~~ig~g~~g~v~~~~~~~~~~~vk~~~  134 (239)
                      |++++|...+...+.+..--.. .++...+.-|...   ++.+...+...+++.+.
T Consensus       142 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~---L~~A~~~~~~~~v~~Ll  194 (228)
T 2dzn_A          142 IPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTP---LFHALAEGHGDAAVLLV  194 (228)
T ss_dssp             CHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCH---HHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCH---HHHHHHcCCHHHHHHHH
Confidence            9999999888877666432222 3333333333332   34444445444554443

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.67  E-value=5.2e-17  Score=135.11  Aligned_cols=93  Identities=22%  Similarity=0.290  Sum_probs=83.8

Q ss_pred             CcCccC------CCCCchHHHHHHH---hCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCccc
Q psy12580          2 YYVSVT------DDHGFSPLHWACK---EGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLT   72 (239)
Q Consensus         2 ~~v~~~------~~~g~tpl~~a~~---~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~   72 (239)
                      .|+|.+      |..|+||||+||.   .|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+ +.|++++
T Consensus       156 ~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpLh~A~~~g~~~~v~~Ll-~~ga~~~  234 (497)
T 3lvq_E          156 QDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLL-KGRALVG  234 (497)
T ss_dssp             CCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHHHHHTTTTCHHHHHHHH-HTCCCCS
T ss_pred             ccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHH-HcCCCCC
Confidence            356666      8899999999976   99999999999999999999999999999999999999999995 5899999


Q ss_pred             ccccCCCCccccccccCcccccc
Q psy12580         73 KINFKDQSWLGLKTRSRDATLSR   95 (239)
Q Consensus        73 ~~~~~~~t~l~~a~~~~~~~~~~   95 (239)
                      ..|..|.||+++|...++..+.+
T Consensus       235 ~~d~~g~tpl~~A~~~~~~~~~~  257 (497)
T 3lvq_E          235 TVNEAGETALDIARKKHHKECEE  257 (497)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHH
Confidence            99999999999998877765544

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.67  E-value=1.1e-16  Score=112.84  Aligned_cols=108  Identities=20%  Similarity=0.211  Sum_probs=88.1

Q ss_pred             CcCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCC-HHHHHHHcCCHhHHHHHHhhcCCcccccccCCCC
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDT-PLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQS   80 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t-~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t   80 (239)
                      .++|.+|..|+||||+|+ .|+.+++++|++.|++++.+|..|+| |||+|+..|+.+++++|+ +.|++++..+..|.|
T Consensus        36 ~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll-~~ga~~~~~d~~g~t  113 (156)
T 1bi7_B           36 ANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLH-RAGARLDVRDAWGRL  113 (156)
T ss_dssp             CCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHH-HHTCCSSCCCTTCCC
T ss_pred             CCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHHCCCHHHHHHHH-HcCCCCcccCCCCCC
Confidence            478999999999999986 99999999999999999999999999 999999999999999995 579999999999999


Q ss_pred             ccccccccCccccccccCCCCCCCccccccc
Q psy12580         81 WLGLKTRSRDATLSRHKGISLNDLSLHTKIS  111 (239)
Q Consensus        81 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ig  111 (239)
                      ++++|...++..+.+...-...+......-|
T Consensus       114 pl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g  144 (156)
T 1bi7_B          114 PVDLAEELGHRDVARYLRAAAGGTRGSNHAR  144 (156)
T ss_dssp             HHHHHHHHTCHHHHHHHSSCC----------
T ss_pred             HHHHHHHhCHHHHHHHHHHcCCCCCccCcCc
Confidence            9999998888777775544444444444333

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.67  E-value=1e-16  Score=127.86  Aligned_cols=94  Identities=26%  Similarity=0.325  Sum_probs=86.7

Q ss_pred             CcCccCC--CCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCC
Q psy12580          2 YYVSVTD--DHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQ   79 (239)
Q Consensus         2 ~~v~~~~--~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~   79 (239)
                      .|+|..|  .+|+||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+ +.|++++..|..|.
T Consensus       224 advn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~LL-~~Gad~~~~d~~G~  302 (368)
T 3jue_A          224 ADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFL-KRGADLGARDSEGR  302 (368)
T ss_dssp             CCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTSC
T ss_pred             CCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHH-HCcCCCCCcCCCCC
Confidence            4788888  88999999999999999999999999999999999999999999999999999995 58999999999999


Q ss_pred             CccccccccCccccccc
Q psy12580         80 SWLGLKTRSRDATLSRH   96 (239)
Q Consensus        80 t~l~~a~~~~~~~~~~~   96 (239)
                      |++++|...++..+.+.
T Consensus       303 TpL~~A~~~g~~~iv~l  319 (368)
T 3jue_A          303 DPLTIAMETANADIVTL  319 (368)
T ss_dssp             CHHHHHHHTTCHHHHHH
T ss_pred             CHHHHHHHCCCHHHHHH
Confidence            99999998887766554

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.66  E-value=5.9e-17  Score=111.53  Aligned_cols=90  Identities=30%  Similarity=0.328  Sum_probs=81.1

Q ss_pred             CCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCcccccc
Q psy12580          7 TDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWLGLKT   86 (239)
Q Consensus         7 ~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~   86 (239)
                      ....|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+ +.+++++..+..|.|++++|.
T Consensus        10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~d~~g~t~L~~A~   88 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLL-KNGADVNAVDAIGFTPLHLAA   88 (136)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTCCCHHHHHH
T ss_pred             ccccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCcCCCCCCCHHHHHH
Confidence            4456899999999999999999999999999999999999999999999999999995 589999999999999999999


Q ss_pred             ccCcccccccc
Q psy12580         87 RSRDATLSRHK   97 (239)
Q Consensus        87 ~~~~~~~~~~~   97 (239)
                      ..++..+.+..
T Consensus        89 ~~~~~~~v~~L   99 (136)
T 2jab_A           89 FIGHLEIAEVL   99 (136)
T ss_dssp             HHTCHHHHHHH
T ss_pred             HcCCHHHHHHH
Confidence            88877666543

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.66  E-value=8e-17  Score=125.52  Aligned_cols=89  Identities=22%  Similarity=0.305  Sum_probs=82.5

Q ss_pred             CCCCCchHHHHHHHh---CCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCccc
Q psy12580          7 TDDHGFSPLHWACKE---GHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWLG   83 (239)
Q Consensus         7 ~~~~g~tpl~~a~~~---~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l~   83 (239)
                      .|..|+||||+|+..   ++.+++++|++.|+++|.+|..|+||||+|+..|+.+++++|+ +.|++++..|..|.||++
T Consensus       186 ~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll-~~gad~~~~d~~G~TpL~  264 (301)
T 2b0o_E          186 AQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLL-KGRALVGTVNEAGETALD  264 (301)
T ss_dssp             SCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHHHHHHTTCHHHHHHHH-HTTCCCSCCCTTSCCHHH
T ss_pred             cCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCCcCCCCCCHHH
Confidence            689999999999997   8999999999999999999999999999999999999999995 589999999999999999


Q ss_pred             cccccCccccccc
Q psy12580         84 LKTRSRDATLSRH   96 (239)
Q Consensus        84 ~a~~~~~~~~~~~   96 (239)
                      +|...++..+.+.
T Consensus       265 ~A~~~~~~~iv~~  277 (301)
T 2b0o_E          265 IARKKHHKECEEL  277 (301)
T ss_dssp             HHHHHTCHHHHHH
T ss_pred             HHHHcCCHHHHHH
Confidence            9998887766553

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.66  E-value=1.7e-16  Score=119.54  Aligned_cols=112  Identities=26%  Similarity=0.314  Sum_probs=90.5

Q ss_pred             CcCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccC-CCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCC
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATN-RGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQS   80 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~-~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t   80 (239)
                      .+++.+|..|+||||+|+..++.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|+ +.|++++..+..|.|
T Consensus       107 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t  185 (241)
T 1k1a_A          107 LDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLL-QHGANVNAQMYSGSS  185 (241)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCBCTTSCB
T ss_pred             ccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHH-HcCCCCCCcCCCCCC
Confidence            3788889999999999999999999999999999999988 78999999999999999999995 578999999999999


Q ss_pred             ccccccccCccccccccCCCCCCCcccccccCCC
Q psy12580         81 WLGLKTRSRDATLSRHKGISLNDLSLHTKISSGP  114 (239)
Q Consensus        81 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ig~g~  114 (239)
                      ++++|...+...+.+..--...+....+.-|...
T Consensus       186 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tp  219 (241)
T 1k1a_A          186 ALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTP  219 (241)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCT
T ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCH
Confidence            9999888887776664433334444444445444

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.66  E-value=1.7e-16  Score=118.21  Aligned_cols=128  Identities=19%  Similarity=0.181  Sum_probs=96.8

Q ss_pred             cCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCcc
Q psy12580          3 YVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWL   82 (239)
Q Consensus         3 ~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l   82 (239)
                      +++.+|..|+||||+|+..++.+++++|++.|++++..|..|+||||+|+..|+.+++++|+ +.+++++..+..|.||+
T Consensus        84 ~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L  162 (223)
T 2f8y_A           84 DLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLL-KNGANKDMQNNREETPL  162 (223)
T ss_dssp             CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTCCCHH
T ss_pred             CcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHH-HcCCCCCCcCCCCcCHH
Confidence            67888899999999999999999999999999999999999999999999999999999995 47889999999999999


Q ss_pred             ccccccCccccccccCCCCCCCcccccccCCCCCCceeeccCCCceeeeeee
Q psy12580         83 GLKTRSRDATLSRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILA  134 (239)
Q Consensus        83 ~~a~~~~~~~~~~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~vk~~~  134 (239)
                      ++|...+...+.+...-...+....+..|...   ...+...+...+++.+.
T Consensus       163 ~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~---l~~A~~~~~~~i~~~L~  211 (223)
T 2f8y_A          163 FLAAREGSYETAKVLLDHFANRDITDHMDRLP---RDIAQERMHHDIVRLLD  211 (223)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCH---HHHHHHTTCHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCccccccCCCH---HHHHHHhcchHHHHHHH
Confidence            99888887766664332233333333333322   33444455555555553

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.66  E-value=2.1e-17  Score=123.19  Aligned_cols=93  Identities=27%  Similarity=0.273  Sum_probs=84.4

Q ss_pred             ccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCcccc
Q psy12580          5 SVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWLGL   84 (239)
Q Consensus         5 ~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~   84 (239)
                      +..|.+|.||||+||..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+...+++++..+..|.|++++
T Consensus        67 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~  146 (222)
T 3ehr_A           67 AEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHA  146 (222)
T ss_dssp             HHHEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHH
T ss_pred             cccccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHH
Confidence            44567789999999999999999999999999999999999999999999999999999664499999999999999999


Q ss_pred             ccccCcccccccc
Q psy12580         85 KTRSRDATLSRHK   97 (239)
Q Consensus        85 a~~~~~~~~~~~~   97 (239)
                      |...++..+.+..
T Consensus       147 A~~~~~~~~v~~L  159 (222)
T 3ehr_A          147 AAWKGYADIVQLL  159 (222)
T ss_dssp             HHHHTCHHHHHHH
T ss_pred             HHHcCCHHHHHHH
Confidence            9988887766543

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.66  E-value=1.2e-16  Score=124.35  Aligned_cols=91  Identities=25%  Similarity=0.430  Sum_probs=76.3

Q ss_pred             CcCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCc
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSW   81 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (239)
                      .++|.+|.+|+||||+||..|+.+++++|++.|++++..|..|+||||+|+..|+.+++++|+ +.|++++..+..|.|+
T Consensus        64 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~g~t~  142 (299)
T 1s70_B           64 ADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLI-SQGAHVGAVNSEGDTP  142 (299)
T ss_dssp             CCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTSCCH
T ss_pred             CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH-hCCCCCCCcCCCCCCH
Confidence            467888888999999999999999999999889999888888999999999889999988884 4788888888888888


Q ss_pred             cccccccCcccc
Q psy12580         82 LGLKTRSRDATL   93 (239)
Q Consensus        82 l~~a~~~~~~~~   93 (239)
                      +++|...+...+
T Consensus       143 l~~A~~~~~~~~  154 (299)
T 1s70_B          143 LDIAEEEAMEEL  154 (299)
T ss_dssp             HHHCCSHHHHHH
T ss_pred             HHHHHhcchHHH
Confidence            888776555443

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.66  E-value=1.7e-16  Score=125.89  Aligned_cols=95  Identities=25%  Similarity=0.384  Sum_probs=87.7

Q ss_pred             CcCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCc
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSW   81 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (239)
                      .++|.+|..|+||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+ +.+++++..+..|.|+
T Consensus        49 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll-~~g~~~~~~~~~g~t~  127 (351)
T 3utm_A           49 VNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLL-KHGACVNAMDLWQFTP  127 (351)
T ss_dssp             TTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTCCCH
T ss_pred             CCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHH-HCCCCCCCCCCCCCCH
Confidence            367889999999999999999999999999999999999999999999999999999999995 5899999999999999


Q ss_pred             cccccccCcccccccc
Q psy12580         82 LGLKTRSRDATLSRHK   97 (239)
Q Consensus        82 l~~a~~~~~~~~~~~~   97 (239)
                      +++|...++..+.+..
T Consensus       128 L~~A~~~~~~~~v~~L  143 (351)
T 3utm_A          128 LHEAASKNRVEVCSLL  143 (351)
T ss_dssp             HHHHHHTTCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHH
Confidence            9999988887666543

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.66  E-value=2.4e-16  Score=121.37  Aligned_cols=88  Identities=25%  Similarity=0.228  Sum_probs=69.0

Q ss_pred             CcCccCCCC-CchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCC
Q psy12580          2 YYVSVTDDH-GFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQS   80 (239)
Q Consensus         2 ~~v~~~~~~-g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t   80 (239)
                      .++|.++.. |+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+ +.|++++..+..|.|
T Consensus       182 ~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll-~~ga~~~~~~~~g~t  260 (282)
T 1oy3_D          182 ADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLR-AHGAPEPEDGGDKLS  260 (282)
T ss_dssp             CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHH-HTTCCCCCCC-----
T ss_pred             CCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHHHH-HcCCCcCcCCCcccc
Confidence            468888855 999999999999999999999999999999999999999999999999999994 699999999999999


Q ss_pred             ccccccccCc
Q psy12580         81 WLGLKTRSRD   90 (239)
Q Consensus        81 ~l~~a~~~~~   90 (239)
                      |+.++.....
T Consensus       261 pl~~a~~~~~  270 (282)
T 1oy3_D          261 PCSSSGSDSD  270 (282)
T ss_dssp             ----------
T ss_pred             cccccCCccc
Confidence            9988776553

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.66  E-value=8.1e-17  Score=122.46  Aligned_cols=130  Identities=18%  Similarity=0.180  Sum_probs=99.8

Q ss_pred             CcCccCCCCCchHHHHHHHhCCHHHHHHHHHCCC-CCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCC
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGA-RVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQS   80 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~-~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t   80 (239)
                      .++|.+|..|+||||+|+..++.+++++|++.|+ +++..+..|.||||+|+..|+.+++++|+ +.+.+++..+..|.|
T Consensus        81 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~d~~g~t  159 (253)
T 1yyh_A           81 ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLI-NSHADVNAVDDLGKS  159 (253)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHH-HTTCCTTCBCTTSCB
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHH-HcCCCCCCcCCCCCC
Confidence            4788999999999999999999999999999987 99999999999999999999999999995 589999999999999


Q ss_pred             ccccccccCccccccccCCCCCCCcccccccCCCCCCceeeccCCCceeeeeeee
Q psy12580         81 WLGLKTRSRDATLSRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAV  135 (239)
Q Consensus        81 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~vk~~~~  135 (239)
                      ++++|...+...+.+..--...++...+.-|...   .+.+...+...+++.+..
T Consensus       160 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tp---L~~A~~~~~~~~v~~Ll~  211 (253)
T 1yyh_A          160 ALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP---LFLAAREGSYETAKVLLD  211 (253)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH---HHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH---HHHHHHCCCHHHHHHHHH
Confidence            9999998888776664433333333333333332   344444455555555533

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.65  E-value=9.6e-17  Score=126.63  Aligned_cols=86  Identities=20%  Similarity=0.212  Sum_probs=79.1

Q ss_pred             CcCcc-CCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCC---HhHHHHHHhhcCCcccccccC
Q psy12580          2 YYVSV-TDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGH---LDIVRLLAVQNNQDLTKINFK   77 (239)
Q Consensus         2 ~~v~~-~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~---~~~v~~Ll~~~~~~~~~~~~~   77 (239)
                      .|||. +|.+|+||||+||..|+.+++++|+++|++++.+|..|+||||+|+..|+   .++++.|+....++++..+..
T Consensus       121 ~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~  200 (327)
T 1sw6_A          121 LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSM  200 (327)
T ss_dssp             CCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTT
T ss_pred             CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCC
Confidence            57899 89999999999999999999999999999999999999999999999998   677877766555789999999


Q ss_pred             CCCccccccc
Q psy12580         78 DQSWLGLKTR   87 (239)
Q Consensus        78 ~~t~l~~a~~   87 (239)
                      |.||+++|..
T Consensus       201 g~tpLh~A~~  210 (327)
T 1sw6_A          201 NRTILHHIII  210 (327)
T ss_dssp             CCCHHHHHHH
T ss_pred             CCCHHHHHHH
Confidence            9999999886

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.65  E-value=9.8e-17  Score=120.65  Aligned_cols=92  Identities=24%  Similarity=0.364  Sum_probs=66.8

Q ss_pred             cCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCc------cccccc
Q psy12580          3 YVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQD------LTKINF   76 (239)
Q Consensus         3 ~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~------~~~~~~   76 (239)
                      ++|.+|..|+||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+. .+.+      ++..+.
T Consensus        37 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~~~~~~~~~~~~~~~~  115 (236)
T 1ikn_D           37 FLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQ-SCTTPHLHSILKATNY  115 (236)
T ss_dssp             CCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHH-STTTTSSSCGGGCCCT
T ss_pred             HhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHh-cccchhHHHHhhccCC
Confidence            577777777888888887788888887777777777777777777777777777777777743 4432      455666


Q ss_pred             CCCCccccccccCcccccc
Q psy12580         77 KDQSWLGLKTRSRDATLSR   95 (239)
Q Consensus        77 ~~~t~l~~a~~~~~~~~~~   95 (239)
                      .|.|++++|...+...+.+
T Consensus       116 ~g~t~L~~A~~~~~~~~v~  134 (236)
T 1ikn_D          116 NGHTCLHLASIHGYLGIVE  134 (236)
T ss_dssp             TCCCHHHHHHHTTCHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHH
Confidence            7777777777766655544

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.65  E-value=2e-16  Score=120.69  Aligned_cols=87  Identities=28%  Similarity=0.312  Sum_probs=78.8

Q ss_pred             CccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccC--------------CCCCCHHHHHHHcCCHhHHHHHHhh--c
Q psy12580          4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATN--------------RGDDTPLHLAAAHGHLDIVRLLAVQ--N   67 (239)
Q Consensus         4 v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~--------------~~g~t~l~~a~~~g~~~~v~~Ll~~--~   67 (239)
                      ++.+|..|+||||+||..|+.+++++|++.|++++..+              ..|+||||+|+..|+.+++++|+..  .
T Consensus        86 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~  165 (260)
T 3jxi_A           86 FRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHK  165 (260)
T ss_dssp             BCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSC
T ss_pred             ccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhcccc
Confidence            44566689999999999999999999999999999999              6899999999999999999999543  8


Q ss_pred             CCcccccccCCCCccccccccCc
Q psy12580         68 NQDLTKINFKDQSWLGLKTRSRD   90 (239)
Q Consensus        68 ~~~~~~~~~~~~t~l~~a~~~~~   90 (239)
                      |++++..+..|.|++++|...+.
T Consensus       166 ga~~~~~d~~g~TpLh~A~~~~~  188 (260)
T 3jxi_A          166 QADLRRQDSRGNTVLHALVAIAD  188 (260)
T ss_dssp             CCCTTCCCTTSCCHHHHHHHHCC
T ss_pred             CCCCcccCCCCCcHHHHHHHhcc
Confidence            99999999999999999886544

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.65  E-value=3.7e-16  Score=117.43  Aligned_cols=94  Identities=23%  Similarity=0.380  Sum_probs=87.1

Q ss_pred             CcCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCc
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSW   81 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (239)
                      +|++.+|.+|+||||+|+..|+.+++++|++.|++++..+..|+||||.|+..|+.+++++|+ +.+.+++..+..+.|+
T Consensus         2 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~   80 (237)
T 3b7b_A            2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLI-KAGALVDPKDAEGSTC   80 (237)
T ss_dssp             CCCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH-TTTCCCCCCCTTSCCH
T ss_pred             CCcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHH-hCCCCCCCCCCCCCcH
Confidence            588999999999999999999999999999999999999999999999999999999999995 5899999999999999


Q ss_pred             cccccccCccccccc
Q psy12580         82 LGLKTRSRDATLSRH   96 (239)
Q Consensus        82 l~~a~~~~~~~~~~~   96 (239)
                      +++|...+...+.+.
T Consensus        81 L~~A~~~~~~~~~~~   95 (237)
T 3b7b_A           81 LHLAAKKGHYEVVQY   95 (237)
T ss_dssp             HHHHHHTTCHHHHHH
T ss_pred             HHHHHHcCCHHHHHH
Confidence            999998887766553

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.65  E-value=3.4e-16  Score=117.83  Aligned_cols=94  Identities=22%  Similarity=0.270  Sum_probs=73.6

Q ss_pred             CcCccCCCCCchHHHHHHHhCCHHHHHHHHHCCC----CCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccc-c
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGA----RVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKIN-F   76 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~----~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~-~   76 (239)
                      .+++.+|..|+||||+|+..++.+++++|++.++    +++..+..|.||||+|+..|+.+++++|+ +.+.+++..+ .
T Consensus        70 ~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll-~~g~~~~~~~~~  148 (241)
T 1k1a_A           70 ASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLL-ERGADIDAVDIK  148 (241)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTT
T ss_pred             CCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHH-HcCCCccccccc
Confidence            3677788888888888888888888888888776    77888888888888888888888888884 4777777776 6


Q ss_pred             CCCCccccccccCccccccc
Q psy12580         77 KDQSWLGLKTRSRDATLSRH   96 (239)
Q Consensus        77 ~~~t~l~~a~~~~~~~~~~~   96 (239)
                      .|.|++++|...+...+.+.
T Consensus       149 ~g~t~L~~A~~~~~~~~v~~  168 (241)
T 1k1a_A          149 SGRSPLIHAVENNSLSMVQL  168 (241)
T ss_dssp             TCCCHHHHHHHTTCHHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHH
Confidence            77888888877777665553

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.65  E-value=2.2e-16  Score=118.30  Aligned_cols=92  Identities=16%  Similarity=0.113  Sum_probs=84.2

Q ss_pred             ccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCcccc
Q psy12580          5 SVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWLGL   84 (239)
Q Consensus         5 ~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~   84 (239)
                      +..+.+|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+ +.|++++..+..|.||+++
T Consensus        15 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll-~~ga~~n~~d~~g~tpLh~   93 (229)
T 2vge_A           15 RRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLI-TAGANVNSPDSHGWTPLHC   93 (229)
T ss_dssp             CCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTCCCHHHH
T ss_pred             cccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-HCCCCCCCCCCCCCCHHHH
Confidence            445667899999999999999999999999999999999999999999999999999995 5899999999999999999


Q ss_pred             ccccCcccccccc
Q psy12580         85 KTRSRDATLSRHK   97 (239)
Q Consensus        85 a~~~~~~~~~~~~   97 (239)
                      |...++..+.+..
T Consensus        94 A~~~g~~~~v~~L  106 (229)
T 2vge_A           94 AASCNDTVICMAL  106 (229)
T ss_dssp             HHHTTCHHHHHHH
T ss_pred             HHHcCCHHHHHHH
Confidence            9998887776644

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.64  E-value=2.2e-16  Score=121.68  Aligned_cols=92  Identities=25%  Similarity=0.416  Sum_probs=63.4

Q ss_pred             cCccCCCCCchHHHHHHHhCCHHHHHHHHHCCC-CCCccCCCCC------------------------------------
Q psy12580          3 YVSVTDDHGFSPLHWACKEGHLKLVELLLQRGA-RVNATNRGDD------------------------------------   45 (239)
Q Consensus         3 ~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~-~~~~~~~~g~------------------------------------   45 (239)
                      .+|.+|.+|+||||+|+..|+.+++++|++.|+ +++..+..|.                                    
T Consensus       103 ~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~  182 (276)
T 4hbd_A          103 VVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQA  182 (276)
T ss_dssp             HHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTT
T ss_pred             cCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCC
Confidence            488999999999999999999999999999998 7777666554                                    


Q ss_pred             --CHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCccccccccCcccccc
Q psy12580         46 --TPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWLGLKTRSRDATLSR   95 (239)
Q Consensus        46 --t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~   95 (239)
                        ||||+|+..|+.+++++|+ +.|++++..|..|.||+++|...++..+.+
T Consensus       183 g~tpLh~A~~~g~~~~v~~Ll-~~gad~n~~d~~G~TpLh~A~~~g~~~iv~  233 (276)
T 4hbd_A          183 GQTALMLAVSHGRVDVVKALL-ACEADVNVQDDDGSTALMCACEHGHKEIAG  233 (276)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHH-hCCCCCCCCCCCCCCHHHHHHHCCCHHHHH
Confidence              5555555555555555553 345555555555555555555555444333

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.64  E-value=1.9e-16  Score=120.47  Aligned_cols=93  Identities=23%  Similarity=0.190  Sum_probs=83.1

Q ss_pred             CcCccCCCC-------------CchHHHHHHHhCCHHHHHHHHH---CCCCCCccCCCCCCHHHHHHH--cCCHh-----
Q psy12580          2 YYVSVTDDH-------------GFSPLHWACKEGHLKLVELLLQ---RGARVNATNRGDDTPLHLAAA--HGHLD-----   58 (239)
Q Consensus         2 ~~v~~~~~~-------------g~tpl~~a~~~~~~~~~~~ll~---~g~~~~~~~~~g~t~l~~a~~--~g~~~-----   58 (239)
                      .++|.+|..             |+||||+|+..|+.+++++|++   .|+++|.+|..|+||||+|+.  .++.+     
T Consensus       114 a~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~  193 (256)
T 2etb_A          114 ADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALV  193 (256)
T ss_dssp             CCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHH
T ss_pred             CCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHH
Confidence            356777765             9999999999999999999999   999999999999999999998  78888     


Q ss_pred             --HHHHHHhhcCCcc-------cccccCCCCccccccccCcccccc
Q psy12580         59 --IVRLLAVQNNQDL-------TKINFKDQSWLGLKTRSRDATLSR   95 (239)
Q Consensus        59 --~v~~Ll~~~~~~~-------~~~~~~~~t~l~~a~~~~~~~~~~   95 (239)
                        ++++|+ +.|+++       +..+..|.||+++|...++..+.+
T Consensus       194 ~~iv~~Ll-~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~  238 (256)
T 2etb_A          194 IHMYDGLL-QMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFR  238 (256)
T ss_dssp             HHHHHHHH-HHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHH-HcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHH
Confidence              999995 588888       889999999999999888766554

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.64  E-value=4.2e-16  Score=117.13  Aligned_cols=90  Identities=32%  Similarity=0.533  Sum_probs=45.2

Q ss_pred             cCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCcc
Q psy12580          3 YVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWL   82 (239)
Q Consensus         3 ~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l   82 (239)
                      +++.+|..|+||||+|+..++.+++++|++.|++++.++..|.||||.|+..|+.+++++|+ +.+.+++..+..|.||+
T Consensus       103 ~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll-~~g~~~~~~~~~g~t~L  181 (237)
T 3b7b_A          103 DVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILL-AAKCDLHAVNIHGDSPL  181 (237)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHH-TTTCCTTCCCTTCCCHH
T ss_pred             CcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHH-HcCCCCCCcCCCCCCHH
Confidence            34444555555555555555555555555555555555555555555555555555555552 34455555555555555


Q ss_pred             ccccccCcccc
Q psy12580         83 GLKTRSRDATL   93 (239)
Q Consensus        83 ~~a~~~~~~~~   93 (239)
                      ++|...+...+
T Consensus       182 ~~A~~~~~~~~  192 (237)
T 3b7b_A          182 HIAARENRYDC  192 (237)
T ss_dssp             HHHHHTTCHHH
T ss_pred             HHHHHhCCHhH
Confidence            55444444333

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.64  E-value=2e-16  Score=118.51  Aligned_cols=92  Identities=17%  Similarity=0.215  Sum_probs=64.1

Q ss_pred             cCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCC-----CccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCccccccc-
Q psy12580          3 YVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARV-----NATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINF-   76 (239)
Q Consensus         3 ~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~-----~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~-   76 (239)
                      ++|.+|.+|+||||+|+..|+.+++++|++.|+++     +..|..|+||||+|+..|+.+++++|+ +.+++++..+. 
T Consensus        29 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~  107 (232)
T 2rfa_A           29 EVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALL-ARGASVSARATG  107 (232)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCCS
T ss_pred             CcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHH-hCCCCCCcccCC
Confidence            56777777777777777777777777777777766     556667777777777777777777774 35666665543 


Q ss_pred             ------------CCCCccccccccCcccccc
Q psy12580         77 ------------KDQSWLGLKTRSRDATLSR   95 (239)
Q Consensus        77 ------------~~~t~l~~a~~~~~~~~~~   95 (239)
                                  .|.|++++|...+...+.+
T Consensus       108 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~  138 (232)
T 2rfa_A          108 SVFHYRPHNLIYYGEHPLSFAACVGSEEIVR  138 (232)
T ss_dssp             GGGSCCTTCSCCCCSSHHHHHHHHTCHHHHH
T ss_pred             cceeecccccccCCCCHHHHHHHcCCHHHHH
Confidence                        5677777777666655544

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.64  E-value=3.4e-16  Score=116.53  Aligned_cols=128  Identities=18%  Similarity=0.194  Sum_probs=99.7

Q ss_pred             CcCccCCCCCchHHHHHHHhCCHHHHHHHHHCCC-CCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCC
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGA-RVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQS   80 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~-~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t   80 (239)
                      .++|.+|..|+||||+|+..++.+++++|++.++ +++..+..|.||||+|+..|+.+++++|+ +.+.+++..+..|.|
T Consensus        49 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll-~~g~~~~~~~~~g~t  127 (223)
T 2f8y_A           49 ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLI-NSHADVNAVDDLGKS  127 (223)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHH-HTTCCTTCBCTTSCB
T ss_pred             CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHH-HcCCCCcCcCCCCCc
Confidence            4788999999999999999999999999999987 99999999999999999999999999995 589999999999999


Q ss_pred             ccccccccCccccccccCCCCCCCcccccccCCCCCCceeeccCCCceeeeee
Q psy12580         81 WLGLKTRSRDATLSRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKIL  133 (239)
Q Consensus        81 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~vk~~  133 (239)
                      ++++|...+...+.+..--...+....+.-|...   ++.+...+...+++.+
T Consensus       128 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~---L~~A~~~~~~~~v~~L  177 (223)
T 2f8y_A          128 ALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP---LFLAAREGSYETAKVL  177 (223)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH---HHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCH---HHHHHHcCCHHHHHHH
Confidence            9999998888776664322233333333333322   3444444444455444

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.64  E-value=4.1e-16  Score=116.74  Aligned_cols=95  Identities=29%  Similarity=0.396  Sum_probs=82.5

Q ss_pred             CcCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCc
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSW   81 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (239)
                      .++|.+|..|+||||+|+..++.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+ +.+.+++..+..+.|+
T Consensus        64 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll-~~g~~~~~~~~~g~t~  142 (231)
T 3aji_A           64 VPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLL-EGGANPDAKDHYDATA  142 (231)
T ss_dssp             CCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCH
T ss_pred             CCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCCcCCCCCcH
Confidence            467888999999999999999999999999999999999999999999999999999999984 5888888888889999


Q ss_pred             cccccccCcccccccc
Q psy12580         82 LGLKTRSRDATLSRHK   97 (239)
Q Consensus        82 l~~a~~~~~~~~~~~~   97 (239)
                      +++|...+...+.+..
T Consensus       143 L~~A~~~~~~~~v~~L  158 (231)
T 3aji_A          143 MHRAAAKGNLKMVHIL  158 (231)
T ss_dssp             HHHHHHHTCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHH
Confidence            9988887776665543

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.64  E-value=4.9e-16  Score=123.21  Aligned_cols=84  Identities=30%  Similarity=0.398  Sum_probs=68.7

Q ss_pred             CcCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCc
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSW   81 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (239)
                      .++|.+|..|+||||+|+..|+.+++++|++.|+++|.+|..|+||||+|+..|+.+++++|+ +.|++++..+..|.|+
T Consensus       238 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll-~~gad~~~~~~~g~ta  316 (351)
T 3utm_A          238 ANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLL-SYGSDPSIISLQGFTA  316 (351)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTSCCH
T ss_pred             CCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHH-HcCCCCCCcCCCCCCh
Confidence            367788888888888888888888888888888888888888888888888888888888884 4788888888888888


Q ss_pred             ccccc
Q psy12580         82 LGLKT   86 (239)
Q Consensus        82 l~~a~   86 (239)
                      ++++.
T Consensus       317 l~~a~  321 (351)
T 3utm_A          317 AQMGN  321 (351)
T ss_dssp             HHHSC
T ss_pred             hhhhh
Confidence            87764

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.64  E-value=4.4e-16  Score=116.56  Aligned_cols=94  Identities=30%  Similarity=0.472  Sum_probs=86.5

Q ss_pred             cCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCcc
Q psy12580          3 YVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWL   82 (239)
Q Consensus         3 ~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l   82 (239)
                      +++.+|.+|+||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+ +.+.+++..+..|.|++
T Consensus        32 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L  110 (231)
T 3aji_A           32 LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALL-VKGAHVNAVNQNGCTPL  110 (231)
T ss_dssp             GGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTSCCHH
T ss_pred             hhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHH-HcCCCCCCCCCCCCCHH
Confidence            36788999999999999999999999999999999999999999999999999999999995 58999999999999999


Q ss_pred             ccccccCcccccccc
Q psy12580         83 GLKTRSRDATLSRHK   97 (239)
Q Consensus        83 ~~a~~~~~~~~~~~~   97 (239)
                      ++|...+...+.+..
T Consensus       111 ~~A~~~~~~~~~~~L  125 (231)
T 3aji_A          111 HYAASKNRHEIAVML  125 (231)
T ss_dssp             HHHHHTTCHHHHHHH
T ss_pred             HHHHHcCCHHHHHHH
Confidence            999988887666543

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.64  E-value=2.9e-16  Score=128.52  Aligned_cols=92  Identities=27%  Similarity=0.461  Sum_probs=50.7

Q ss_pred             cCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCcc
Q psy12580          3 YVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWL   82 (239)
Q Consensus         3 ~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l   82 (239)
                      ++|.+|..|+||||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+.+++++|+ +.|++++..+..|.||+
T Consensus       270 ~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll-~~gad~n~~~~~g~t~L  348 (437)
T 1n11_A          270 NGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLL-QHQADVNAKTKLGYSPL  348 (437)
T ss_dssp             CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHH-HTTCCTTCCCTTSCCHH
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHH-hcCCCCCCCCCCCCCHH
Confidence            44555555555555555555555555555555555555555555555555555555555553 34555555555555555


Q ss_pred             ccccccCcccccc
Q psy12580         83 GLKTRSRDATLSR   95 (239)
Q Consensus        83 ~~a~~~~~~~~~~   95 (239)
                      ++|...++..+.+
T Consensus       349 ~~A~~~g~~~iv~  361 (437)
T 1n11_A          349 HQAAQQGHTDIVT  361 (437)
T ss_dssp             HHHHHTTCHHHHH
T ss_pred             HHHHHCChHHHHH
Confidence            5555555544443

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.64  E-value=2.6e-16  Score=125.88  Aligned_cols=91  Identities=16%  Similarity=0.165  Sum_probs=47.5

Q ss_pred             cCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCC-----CCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccC
Q psy12580          3 YVSVTDDHGFSPLHWACKEGHLKLVELLLQRGAR-----VNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFK   77 (239)
Q Consensus         3 ~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~-----~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~   77 (239)
                      |+|.+|..|+||||+|+..|+.+++++|++.|++     +|.+|..|+||||+|+..|+.+++++|+ +.|++++..+..
T Consensus       165 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll-~~gad~~~~d~~  243 (364)
T 3ljn_A          165 SPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFV-EMGIDVNMEDNE  243 (364)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHH-TTTCCTTCCCTT
T ss_pred             CCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHH-HcCCCCCCCCCC
Confidence            4455555555555555555555555555555554     5555555555555555555555555552 345555555555


Q ss_pred             CCCccccccccCccccc
Q psy12580         78 DQSWLGLKTRSRDATLS   94 (239)
Q Consensus        78 ~~t~l~~a~~~~~~~~~   94 (239)
                      |.||+++|...++..+.
T Consensus       244 g~tpL~~A~~~g~~~~v  260 (364)
T 3ljn_A          244 HTVPLYLSVRAAMVLLT  260 (364)
T ss_dssp             SCCHHHHHHHTCCHHHH
T ss_pred             CCCHHHHHHHhChHHHH
Confidence            55555555554444333

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.64  E-value=4.5e-16  Score=116.65  Aligned_cols=90  Identities=20%  Similarity=0.189  Sum_probs=79.8

Q ss_pred             ccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHH----HHHHhhcCCcc------ccc
Q psy12580          5 SVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIV----RLLAVQNNQDL------TKI   74 (239)
Q Consensus         5 ~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v----~~Ll~~~~~~~------~~~   74 (239)
                      +..|..|+||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++    ++|+ +.+++.      +..
T Consensus       115 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll-~~g~~~~~~~~~~~~  193 (232)
T 2rfa_A          115 HNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLL-SYDGGDHLKSLELVP  193 (232)
T ss_dssp             TCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHH-HTTCSCSSCCGGGCC
T ss_pred             cccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHH-hcCCchhhhhhhccC
Confidence            44456899999999999999999999999999999999999999999999999988    8884 577776      578


Q ss_pred             ccCCCCccccccccCcccccc
Q psy12580         75 NFKDQSWLGLKTRSRDATLSR   95 (239)
Q Consensus        75 ~~~~~t~l~~a~~~~~~~~~~   95 (239)
                      +..|.||+++|...++..+.+
T Consensus       194 ~~~g~tpl~~A~~~g~~~~v~  214 (232)
T 2rfa_A          194 NNQGLTPFKLAGVEGNIVMFQ  214 (232)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHH
Confidence            899999999999888776655

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.63  E-value=2.8e-16  Score=119.81  Aligned_cols=86  Identities=20%  Similarity=0.199  Sum_probs=78.1

Q ss_pred             CCCchHHHHHHHhCCHHHHHHHHH---CCCCCCccCCCCCCHHHHHHHcCC---------HhHHHHHHhhcCCcc-----
Q psy12580          9 DHGFSPLHWACKEGHLKLVELLLQ---RGARVNATNRGDDTPLHLAAAHGH---------LDIVRLLAVQNNQDL-----   71 (239)
Q Consensus         9 ~~g~tpl~~a~~~~~~~~~~~ll~---~g~~~~~~~~~g~t~l~~a~~~g~---------~~~v~~Ll~~~~~~~-----   71 (239)
                      ..|+||||+|+..|+.+++++|++   .|++++.+|..|+||||+|+..|+         .+++++|+ +.|+++     
T Consensus       138 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll-~~ga~~~~~~~  216 (260)
T 3jxi_A          138 YFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLL-IKCAKLFPDTN  216 (260)
T ss_dssp             CSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHH-HHHHHHCTTCC
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHH-HhCcccccccc
Confidence            689999999999999999999999   999999999999999999998887         68999995 588888     


Q ss_pred             --cccccCCCCccccccccCcccccc
Q psy12580         72 --TKINFKDQSWLGLKTRSRDATLSR   95 (239)
Q Consensus        72 --~~~~~~~~t~l~~a~~~~~~~~~~   95 (239)
                        +..+..|.||+++|...++..+.+
T Consensus       217 ~~~~~d~~g~tpL~~A~~~g~~~~v~  242 (260)
T 3jxi_A          217 LEALLNNDGLSPLMMAAKTGKIGIFQ  242 (260)
T ss_dssp             GGGCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             hhhcccCCCCCHHHHHHHcCCHHHHH
Confidence              678999999999999888776554

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.63  E-value=5.9e-16  Score=117.78  Aligned_cols=81  Identities=28%  Similarity=0.336  Sum_probs=75.9

Q ss_pred             CCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCC-------------CCCHHHHHHHcCCHhHHHHHHhh--cCCcc
Q psy12580          7 TDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRG-------------DDTPLHLAAAHGHLDIVRLLAVQ--NNQDL   71 (239)
Q Consensus         7 ~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~-------------g~t~l~~a~~~g~~~~v~~Ll~~--~~~~~   71 (239)
                      +|..|+||||+|+..|+.+++++|++.|++++.++..             |+||||+|+..|+.+++++|+..  .|+++
T Consensus        86 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~  165 (256)
T 2etb_A           86 EFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASL  165 (256)
T ss_dssp             TTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCT
T ss_pred             ccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCc
Confidence            4577999999999999999999999999999999987             99999999999999999999543  89999


Q ss_pred             cccccCCCCccccccc
Q psy12580         72 TKINFKDQSWLGLKTR   87 (239)
Q Consensus        72 ~~~~~~~~t~l~~a~~   87 (239)
                      +..+..|.|++++|..
T Consensus       166 n~~d~~g~TpLh~A~~  181 (256)
T 2etb_A          166 EATDSLGNTVLHALVM  181 (256)
T ss_dssp             TCCCTTSCCHHHHHHH
T ss_pred             CccCCCCCCHHHHHHH
Confidence            9999999999999887

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.63  E-value=4.4e-16  Score=105.32  Aligned_cols=86  Identities=40%  Similarity=0.663  Sum_probs=79.8

Q ss_pred             CCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCccccccccC
Q psy12580         10 HGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWLGLKTRSR   89 (239)
Q Consensus        10 ~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~   89 (239)
                      +|+||||+|+..|+.+++++|++.|++++..+..|.||||.|+..|+.+++++|+ +.+.+++..+..|.|++++|...+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll-~~g~~~~~~~~~g~t~l~~A~~~~   79 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL-EAGADVNAKDKNGRTPLHLAARNG   79 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHH-HcCCCCcccCCCCCcHHHHHHHcC
Confidence            5899999999999999999999999999999999999999999999999999995 589999999999999999999888


Q ss_pred             ccccccc
Q psy12580         90 DATLSRH   96 (239)
Q Consensus        90 ~~~~~~~   96 (239)
                      ...+.+.
T Consensus        80 ~~~~~~~   86 (126)
T 1n0r_A           80 HLEVVKL   86 (126)
T ss_dssp             CHHHHHH
T ss_pred             hHHHHHH
Confidence            7666554

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.63  E-value=1.5e-16  Score=123.14  Aligned_cols=91  Identities=26%  Similarity=0.283  Sum_probs=79.8

Q ss_pred             cCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCcc
Q psy12580          3 YVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWL   82 (239)
Q Consensus         3 ~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l   82 (239)
                      ++|.+|.+|+||||+|+..|+.+++++|++.|++++..+  |+||||+|+..|+.+++++|+ +.|++++..+..|.||+
T Consensus        23 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll-~~ga~~~~~d~~g~t~L   99 (285)
T 3kea_A           23 DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILL-FSGLDDSQFDDKGNTAL   99 (285)
T ss_dssp             TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT--TCCHHHHHTTSSSCHHHHHHH-HTTCCTTCCCTTSCCHH
T ss_pred             CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHH-HCCCCCCCcCCCCCcHH
Confidence            678899999999999999999999999999999998884  899999999999999999995 57899998899999999


Q ss_pred             ccccccCccccccc
Q psy12580         83 GLKTRSRDATLSRH   96 (239)
Q Consensus        83 ~~a~~~~~~~~~~~   96 (239)
                      ++|...++..+.+.
T Consensus       100 ~~A~~~g~~~~v~~  113 (285)
T 3kea_A          100 YYAVDSGNMQTVKL  113 (285)
T ss_dssp             HHHHHTTCHHHHHH
T ss_pred             HHHHHcCCHHHHHH
Confidence            99888887666553

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.63  E-value=5.2e-16  Score=120.10  Aligned_cols=92  Identities=23%  Similarity=0.232  Sum_probs=83.8

Q ss_pred             CccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCccc
Q psy12580          4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWLG   83 (239)
Q Consensus         4 v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l~   83 (239)
                      ++.+|.+|+||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+ +.+++++..+..|.|+++
T Consensus        52 ~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll-~~ga~~~~~~~~g~t~L~  130 (285)
T 3d9h_A           52 LMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILL-KHGAQVNGVTADWHTPLF  130 (285)
T ss_dssp             TCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHH-HTTCCSSCCCTTCCCHHH
T ss_pred             ccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHH-HCCCCCCCCCCCCCCHHH
Confidence            5678999999999999999999999999999999999999999999999999999999995 579999999999999999


Q ss_pred             cccccCccccccc
Q psy12580         84 LKTRSRDATLSRH   96 (239)
Q Consensus        84 ~a~~~~~~~~~~~   96 (239)
                      +|...+...+.+.
T Consensus       131 ~A~~~~~~~~v~~  143 (285)
T 3d9h_A          131 NACVSGSWDCVNL  143 (285)
T ss_dssp             HHHHHTCHHHHHH
T ss_pred             HHHHcCHHHHHHH
Confidence            9988887666553

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.63  E-value=6.7e-17  Score=129.28  Aligned_cols=103  Identities=22%  Similarity=0.267  Sum_probs=89.1

Q ss_pred             cCccCCCCCchHHHHHHHhC--CHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCc-----ccccc
Q psy12580          3 YVSVTDDHGFSPLHWACKEG--HLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQD-----LTKIN   75 (239)
Q Consensus         3 ~v~~~~~~g~tpl~~a~~~~--~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~-----~~~~~   75 (239)
                      +++.+|.+|+||||+|+..|  +.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+ +.+++     ++..+
T Consensus       130 ~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~~~~  208 (364)
T 3ljn_A          130 GSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMM-DTVPSKSSLRLDYAN  208 (364)
T ss_dssp             TTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HHCSCSSSCCTTCCC
T ss_pred             ccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHH-hcccccccccccccC
Confidence            34558899999999999999  999999999999999999999999999999999999999995 47777     89999


Q ss_pred             cCCCCccccccccCccccccccCCCCCCCcc
Q psy12580         76 FKDQSWLGLKTRSRDATLSRHKGISLNDLSL  106 (239)
Q Consensus        76 ~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~  106 (239)
                      ..|.|++++|...++..+.+..--...++..
T Consensus       209 ~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~  239 (364)
T 3ljn_A          209 KQGNSHLHWAILINWEDVAMRFVEMGIDVNM  239 (364)
T ss_dssp             TTCCCTTHHHHTTTCHHHHHHHHTTTCCTTC
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence            9999999999999888777654333333333

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.62  E-value=4.7e-16  Score=113.91  Aligned_cols=89  Identities=24%  Similarity=0.268  Sum_probs=79.6

Q ss_pred             CcCccCCCCCchHHHHHHHhCCHHHHHHHH-HCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCC
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHLKLVELLL-QRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQS   80 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~~~~~~ll-~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t   80 (239)
                      .++|.+|..|+||||+|+..++.+++++|+ ..+++++..+..|.||||+|+..|+.+++++|+.....+++..+..|.|
T Consensus        63 ~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t  142 (201)
T 3hra_A           63 ADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYT  142 (201)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCC
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCC
Confidence            478899999999999999999999999999 5688999999999999999999999999999966444899999999999


Q ss_pred             ccccccccCc
Q psy12580         81 WLGLKTRSRD   90 (239)
Q Consensus        81 ~l~~a~~~~~   90 (239)
                      |+++|...+.
T Consensus       143 ~L~~A~~~~~  152 (201)
T 3hra_A          143 ALIEAVGLRE  152 (201)
T ss_dssp             HHHHHHHSSC
T ss_pred             HHHHHHHhcc
Confidence            9999887665

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.62  E-value=8.3e-16  Score=118.10  Aligned_cols=84  Identities=29%  Similarity=0.372  Sum_probs=78.1

Q ss_pred             CCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCC--------------CCCCHHHHHHHcCCHhHHHHHHhh--cCCc
Q psy12580          7 TDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNR--------------GDDTPLHLAAAHGHLDIVRLLAVQ--NNQD   70 (239)
Q Consensus         7 ~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~--------------~g~t~l~~a~~~g~~~~v~~Ll~~--~~~~   70 (239)
                      +|..|+||||+|+..|+.+++++|++.|++++.++.              .|.||||+|+..|+.+++++|+..  .|++
T Consensus        97 ~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad  176 (273)
T 2pnn_A           97 SYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPAD  176 (273)
T ss_dssp             TTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCC
T ss_pred             ccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCC
Confidence            677899999999999999999999999999999997              799999999999999999999543  8999


Q ss_pred             ccccccCCCCccccccccCc
Q psy12580         71 LTKINFKDQSWLGLKTRSRD   90 (239)
Q Consensus        71 ~~~~~~~~~t~l~~a~~~~~   90 (239)
                      ++..+..|.|++++|...++
T Consensus       177 ~~~~d~~g~tpLh~A~~~~~  196 (273)
T 2pnn_A          177 ISARDSVGNTVLHALVEVAD  196 (273)
T ss_dssp             TTCCCTTSCCHHHHHHHHCC
T ss_pred             ceeeCCCCCcHHHHHHHccC
Confidence            99999999999999887655

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.62  E-value=8.4e-17  Score=116.43  Aligned_cols=88  Identities=20%  Similarity=0.189  Sum_probs=80.2

Q ss_pred             CCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccc-cCCCCcccccc
Q psy12580          8 DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKIN-FKDQSWLGLKT   86 (239)
Q Consensus         8 ~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~-~~~~t~l~~a~   86 (239)
                      |.+|+||||+|+..|+.+++++|++ |++++.+|..|+||||+|+..|+.+++++|+ +.|++++..+ ..|.||+++|.
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll-~~ga~~~~~~~~~g~tpL~~A~  118 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLA-EAGADLDHRDMRGGLTALHMAA  118 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHH-HTTCCTTCCCSSSSCCHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCcCCCCCCCCHHHHHH
Confidence            5578999999999999999999999 9999999999999999999999999999995 5899999888 88999999999


Q ss_pred             ccCcccccccc
Q psy12580         87 RSRDATLSRHK   97 (239)
Q Consensus        87 ~~~~~~~~~~~   97 (239)
                      ..++..+.+..
T Consensus       119 ~~~~~~~v~~L  129 (183)
T 3deo_A          119 GYVRPEVVEAL  129 (183)
T ss_dssp             HTTCHHHHHHH
T ss_pred             hcCcHHHHHHH
Confidence            88887666543

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.62  E-value=3.3e-16  Score=128.17  Aligned_cols=92  Identities=35%  Similarity=0.475  Sum_probs=65.6

Q ss_pred             cCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCcc
Q psy12580          3 YVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWL   82 (239)
Q Consensus         3 ~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l   82 (239)
                      ++|.+|..|+||||+||..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+ +.+++++..+..|.|++
T Consensus         6 ~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~g~t~L   84 (437)
T 1n11_A            6 SGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLL-QNKAKVNAKAKDDQTPL   84 (437)
T ss_dssp             ---------CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHH-HHTCCSSCCCTTSCCHH
T ss_pred             CccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-hCCCCCCCCCCCCCCHH
Confidence            57777888888888888888888888888888888888888888888888888888888884 46777777777888888


Q ss_pred             ccccccCcccccc
Q psy12580         83 GLKTRSRDATLSR   95 (239)
Q Consensus        83 ~~a~~~~~~~~~~   95 (239)
                      ++|...++..+.+
T Consensus        85 ~~A~~~g~~~~v~   97 (437)
T 1n11_A           85 HCAARIGHTNMVK   97 (437)
T ss_dssp             HHHHHHTCHHHHH
T ss_pred             HHHHHCCCHHHHH
Confidence            8777777665554

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.62  E-value=1.9e-15  Score=117.47  Aligned_cols=83  Identities=28%  Similarity=0.345  Sum_probs=77.5

Q ss_pred             ccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCcccc
Q psy12580          5 SVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWLGL   84 (239)
Q Consensus         5 ~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~   84 (239)
                      ...+..|.||||+|+..|+.+++++|++.|+++|.+|..|+||||+|+..|+.+++++|+ +.|++++..|..|.||+++
T Consensus       193 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll-~~gad~~~~d~~g~t~l~~  271 (299)
T 1s70_B          193 VRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILV-ENLCDMEAVNKVGQTAFDV  271 (299)
T ss_dssp             CCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCTTTS
T ss_pred             hhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHH-HcCCCCCCcCCCCCCHHHH
Confidence            346788999999999999999999999999999999999999999999999999999995 5899999999999999999


Q ss_pred             cccc
Q psy12580         85 KTRS   88 (239)
Q Consensus        85 a~~~   88 (239)
                      |...
T Consensus       272 A~~~  275 (299)
T 1s70_B          272 ADED  275 (299)
T ss_dssp             CCSG
T ss_pred             HHHH
Confidence            8654

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.62  E-value=7.7e-16  Score=118.51  Aligned_cols=92  Identities=26%  Similarity=0.321  Sum_probs=55.1

Q ss_pred             cCccCCCCCchHHHHHHHhCC----HHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCC
Q psy12580          3 YVSVTDDHGFSPLHWACKEGH----LKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKD   78 (239)
Q Consensus         3 ~v~~~~~~g~tpl~~a~~~~~----~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~   78 (239)
                      ++|.+|..|+||||+|+..++    .+++++|++.|++++.+|..|.||||+|+..|+.+++++|+...+.+++..+..|
T Consensus       174 ~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g  253 (285)
T 1wdy_A          174 DVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDG  253 (285)
T ss_dssp             CTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTS
T ss_pred             CCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCC
Confidence            455556666666666666666    5666666666666666666666666666666666666666444556666666666


Q ss_pred             CCccccccccCccccc
Q psy12580         79 QSWLGLKTRSRDATLS   94 (239)
Q Consensus        79 ~t~l~~a~~~~~~~~~   94 (239)
                      .||+++|...++..+.
T Consensus       254 ~t~l~~A~~~~~~~i~  269 (285)
T 1wdy_A          254 KTALLLAVELKLKKIA  269 (285)
T ss_dssp             CCHHHHHHHTTCHHHH
T ss_pred             CcHHHHHHHcCcHHHH
Confidence            6666665555544433

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.62  E-value=3.7e-16  Score=117.84  Aligned_cols=93  Identities=19%  Similarity=0.210  Sum_probs=80.5

Q ss_pred             cCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCcc
Q psy12580          3 YVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWL   82 (239)
Q Consensus         3 ~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l   82 (239)
                      ++|. +..|.||||+|+..|+.+++++|++.|+++|.+|..|+||||+|+..|+.+++++|+ +.|++++..+..|.|++
T Consensus        30 ~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll-~~ga~~~~~d~~g~tpL  107 (239)
T 1ycs_B           30 RVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLV-QFGVNVNAADSDGWTPL  107 (239)
T ss_dssp             --------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHH-HHTCCTTCCCTTCCCHH
T ss_pred             Cccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCccCCCCCCHH
Confidence            3443 367899999999999999999999999999999999999999999999999999995 58999999999999999


Q ss_pred             ccccccCcccccccc
Q psy12580         83 GLKTRSRDATLSRHK   97 (239)
Q Consensus        83 ~~a~~~~~~~~~~~~   97 (239)
                      ++|...++..+.+..
T Consensus       108 ~~A~~~~~~~~v~~L  122 (239)
T 1ycs_B          108 HCAASCNNVQVCKFL  122 (239)
T ss_dssp             HHHHHTTCHHHHHHH
T ss_pred             HHHHHcCCHHHHHHH
Confidence            999988887766643

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.61  E-value=8.9e-16  Score=119.62  Aligned_cols=82  Identities=22%  Similarity=0.186  Sum_probs=69.4

Q ss_pred             CcCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCc
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSW   81 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (239)
                      .|||.+|.+|+||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+ +.+++      .+.||
T Consensus       217 advn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll-~~ga~------~g~tp  289 (301)
T 2b0o_E          217 GHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLE-QAQAG------TFAFP  289 (301)
T ss_dssp             SCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHH-HHHHH------TTSSC
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH-HhcCC------CCCCh
Confidence            478999999999999999999999999999999999999999999999999999999999995 45554      57899


Q ss_pred             cccccccCc
Q psy12580         82 LGLKTRSRD   90 (239)
Q Consensus        82 l~~a~~~~~   90 (239)
                      +++|...+.
T Consensus       290 Lh~A~~~g~  298 (301)
T 2b0o_E          290 LHVDYSWVI  298 (301)
T ss_dssp             CC-------
T ss_pred             hHHHHhcCC
Confidence            998876553

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.61  E-value=8.3e-16  Score=118.96  Aligned_cols=94  Identities=31%  Similarity=0.389  Sum_probs=83.5

Q ss_pred             CcCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCc
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSW   81 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (239)
                      .++|.+|.+|+||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+ +.+.+++..+ .|.|+
T Consensus        83 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~-~g~t~  160 (285)
T 3d9h_A           83 WAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLL-QHGASVQPES-DLASP  160 (285)
T ss_dssp             CCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHH-HTTCCSSCSC-TTSCH
T ss_pred             CCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHH-HCCCCCCCCC-CCCCH
Confidence            478999999999999999999999999999999999999999999999999999999999995 5788876544 48999


Q ss_pred             cccccccCcccccccc
Q psy12580         82 LGLKTRSRDATLSRHK   97 (239)
Q Consensus        82 l~~a~~~~~~~~~~~~   97 (239)
                      +++|...+...+.+..
T Consensus       161 L~~A~~~g~~~~v~~L  176 (285)
T 3d9h_A          161 IHEAARRGHVECVNSL  176 (285)
T ss_dssp             HHHHHHHTCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHH
Confidence            9999988877666543

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.61  E-value=7.6e-16  Score=121.47  Aligned_cols=85  Identities=21%  Similarity=0.162  Sum_probs=76.3

Q ss_pred             cCccCCCCCchHHHHHHH----hCCHHHHHHHHHCCC-------------------------------------------
Q psy12580          3 YVSVTDDHGFSPLHWACK----EGHLKLVELLLQRGA-------------------------------------------   35 (239)
Q Consensus         3 ~v~~~~~~g~tpl~~a~~----~~~~~~~~~ll~~g~-------------------------------------------   35 (239)
                      ++|.+|..|+||||+|+.    .|+.+++++|++.++                                           
T Consensus       193 ~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll  272 (327)
T 1sw6_A          193 CLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWII  272 (327)
T ss_dssp             GGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHH
T ss_pred             cccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHH
Confidence            688999999999999999    899999999998743                                           


Q ss_pred             --CCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCcccccccc
Q psy12580         36 --RVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWLGLKTRS   88 (239)
Q Consensus        36 --~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~   88 (239)
                        ++|.+|..|+||||+|+..|+.+++++|+ +.|++++..|..|.||+++|...
T Consensus       273 ~~~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll-~~Gad~~~~d~~G~TpL~~A~~~  326 (327)
T 1sw6_A          273 ANMLNAQDSNGDTCLNIAARLGNISIVDALL-DYGADPFIANKSGLRPVDFGAGL  326 (327)
T ss_dssp             HHTTTCCCTTSCCHHHHHHHHCCHHHHHHHH-HTTCCTTCCCTTSCCGGGGTCC-
T ss_pred             HhCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCcccCCCCCCHHHHHHhc
Confidence              58889999999999999999999999995 68999999999999999988754

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.61  E-value=5.8e-16  Score=118.99  Aligned_cols=85  Identities=24%  Similarity=0.220  Sum_probs=77.4

Q ss_pred             CCchHHHHHHHhCCHHHHHHHHH---CCCCCCccCCCCCCHHHHHHHcCC---------HhHHHHHHhhcCCccc-----
Q psy12580         10 HGFSPLHWACKEGHLKLVELLLQ---RGARVNATNRGDDTPLHLAAAHGH---------LDIVRLLAVQNNQDLT-----   72 (239)
Q Consensus        10 ~g~tpl~~a~~~~~~~~~~~ll~---~g~~~~~~~~~g~t~l~~a~~~g~---------~~~v~~Ll~~~~~~~~-----   72 (239)
                      .|+||||+|+..|+.+++++|++   .|++++.+|..|+||||+|+..|+         .+++++|+ +.|++++     
T Consensus       147 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll-~~ga~~n~~~~~  225 (273)
T 2pnn_A          147 FGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEIL-ILGAKLHPTLKL  225 (273)
T ss_dssp             SCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHH-HHHHHHCTTCCG
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHH-Hhhhhccccccc
Confidence            89999999999999999999999   999999999999999999999888         78999995 5788886     


Q ss_pred             --ccccCCCCccccccccCcccccc
Q psy12580         73 --KINFKDQSWLGLKTRSRDATLSR   95 (239)
Q Consensus        73 --~~~~~~~t~l~~a~~~~~~~~~~   95 (239)
                        ..+..|.||+++|...++..+.+
T Consensus       226 ~~~~d~~g~TpL~~A~~~g~~~iv~  250 (273)
T 2pnn_A          226 EEITNRKGLTPLALAASSGKIGVLA  250 (273)
T ss_dssp             GGCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             ccccCCCCCCHHHHHHHhChHHHHH
Confidence              48899999999999888776655

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.60  E-value=3.1e-15  Score=98.98  Aligned_cols=62  Identities=35%  Similarity=0.622  Sum_probs=59.9

Q ss_pred             CcCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHH
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL   63 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~L   63 (239)
                      .++|.+|..|+||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|
T Consensus        48 ~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           48 ADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHHHcCCHHHHHHh
Confidence            47899999999999999999999999999999999999999999999999999999999987

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.60  E-value=6.5e-16  Score=119.57  Aligned_cols=91  Identities=20%  Similarity=0.209  Sum_probs=81.7

Q ss_pred             cCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCC-CCc
Q psy12580          3 YVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKD-QSW   81 (239)
Q Consensus         3 ~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~-~t~   81 (239)
                      ++|.+  +|+||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+ +.|++++..+..| .||
T Consensus        56 ~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll-~~ga~~~~~~~~g~~t~  132 (285)
T 3kea_A           56 LKNLL--ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFV-KKNWRLMFYGKTGWKTS  132 (285)
T ss_dssp             GGSCC--TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HHCGGGGGCSSSGGGSH
T ss_pred             CCCCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHH-hcCCCCCccCCCCCCCH
Confidence            55666  5999999999999999999999999999999999999999999999999999995 5799999999999 899


Q ss_pred             cccccccCccccccc
Q psy12580         82 LGLKTRSRDATLSRH   96 (239)
Q Consensus        82 l~~a~~~~~~~~~~~   96 (239)
                      +++|...++..+.+.
T Consensus       133 L~~A~~~~~~~~v~~  147 (285)
T 3kea_A          133 FYHAVMLNDVSIVSY  147 (285)
T ss_dssp             HHHHHHTTCHHHHHH
T ss_pred             HHHHHHcCCHHHHHH
Confidence            999998887766553

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.58  E-value=3.3e-16  Score=118.48  Aligned_cols=88  Identities=20%  Similarity=0.189  Sum_probs=80.4

Q ss_pred             CCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccc-cCCCCcccccc
Q psy12580          8 DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKIN-FKDQSWLGLKT   86 (239)
Q Consensus         8 ~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~-~~~~t~l~~a~   86 (239)
                      +.+|+||||+||..|+.+++++|++ |+++|.+|..|+||||+|+..|+.+++++|+ +.|++++..+ ..|.||+++|.
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll-~~ga~~~~~~~~~g~t~L~~A~  119 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLA-EAGADLDHRDMRGGLTALHMAA  119 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHH-HTTCCTTCCCSSSCCCHHHHHH
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHH-HcCCCCCcCCCCCCCCHHHHHH
Confidence            3478999999999999999999999 9999999999999999999999999999995 5899999888 78999999999


Q ss_pred             ccCcccccccc
Q psy12580         87 RSRDATLSRHK   97 (239)
Q Consensus        87 ~~~~~~~~~~~   97 (239)
                      ..++..+.+..
T Consensus       120 ~~g~~~~v~~L  130 (244)
T 3ui2_A          120 GYVRPEVVEAL  130 (244)
T ss_dssp             HTTCHHHHHHH
T ss_pred             HcCCHHHHHHH
Confidence            98887766644

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.58  E-value=3e-16  Score=125.98  Aligned_cols=91  Identities=20%  Similarity=0.295  Sum_probs=42.9

Q ss_pred             cCccCCCCCchHHHHHHHhC---CHHHHHHHHHCCCCCCc--------cCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcc
Q psy12580          3 YVSVTDDHGFSPLHWACKEG---HLKLVELLLQRGARVNA--------TNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDL   71 (239)
Q Consensus         3 ~v~~~~~~g~tpl~~a~~~~---~~~~~~~ll~~g~~~~~--------~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~   71 (239)
                      ++|.+|..|+||||+|+..+   +.+++++|++.|++++.        .|..|+||||+|+..|+.+++++|+...+.++
T Consensus       227 ~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~  306 (373)
T 2fo1_E          227 DIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNK  306 (373)
T ss_dssp             TTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCT
T ss_pred             ChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCc
Confidence            34444444555555544444   44445555544444443        33344555555555555555554433333444


Q ss_pred             cccccCCCCccccccccCcccc
Q psy12580         72 TKINFKDQSWLGLKTRSRDATL   93 (239)
Q Consensus        72 ~~~~~~~~t~l~~a~~~~~~~~   93 (239)
                      +..+..|.|++++|...++..+
T Consensus       307 n~~d~~g~TpL~~A~~~g~~~i  328 (373)
T 2fo1_E          307 DKQDEDGKTPIMLAAQEGRIEV  328 (373)
T ss_dssp             TCCCTTCCCHHHHHHHHTCHHH
T ss_pred             cCcCCCCCCHHHHHHHcCCHHH
Confidence            4444445555554444444333

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.58  E-value=3.8e-15  Score=114.63  Aligned_cols=94  Identities=23%  Similarity=0.363  Sum_probs=85.4

Q ss_pred             CcCccC-CCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCC
Q psy12580          2 YYVSVT-DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQS   80 (239)
Q Consensus         2 ~~v~~~-~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t   80 (239)
                      .++|.+ +..|+||||+|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|+ +.+.+++..+..|.|
T Consensus        29 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t  107 (285)
T 1wdy_A           29 ANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFL-SKGADVNECDFYGFT  107 (285)
T ss_dssp             CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH-HTTCCTTCBCTTCCB
T ss_pred             CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCccCcccCC
Confidence            367777 788999999999999999999999999999999999999999999999999999995 589999999999999


Q ss_pred             ccccccccCccccccc
Q psy12580         81 WLGLKTRSRDATLSRH   96 (239)
Q Consensus        81 ~l~~a~~~~~~~~~~~   96 (239)
                      ++++|...++..+.+.
T Consensus       108 ~L~~A~~~~~~~~~~~  123 (285)
T 1wdy_A          108 AFMEAAVYGKVKALKF  123 (285)
T ss_dssp             HHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHhCCHHHHHH
Confidence            9999998887665553

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.58  E-value=7.9e-15  Score=112.99  Aligned_cols=68  Identities=24%  Similarity=0.363  Sum_probs=63.7

Q ss_pred             CcCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCc
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQD   70 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~   70 (239)
                      .|+|.+|.+|+||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+. .+++
T Consensus       196 a~in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~  263 (278)
T 1dcq_A          196 GNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQ-ALSG  263 (278)
T ss_dssp             SCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-HHTT
T ss_pred             CCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHH-cCCC
Confidence            4789999999999999999999999999999999999999999999999999999999999954 5553

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.57  E-value=2.5e-15  Score=120.60  Aligned_cols=91  Identities=19%  Similarity=0.344  Sum_probs=83.2

Q ss_pred             ccCCCCCchHHHHHHHhCCHHHHHHHHHCC-CCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCccc
Q psy12580          5 SVTDDHGFSPLHWACKEGHLKLVELLLQRG-ARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWLG   83 (239)
Q Consensus         5 ~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g-~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l~   83 (239)
                      +.+|..|+||||+|+..|+.+++++|++.| ++++.+|..|+||||+|+..|+.+++++|+ +.|++++..|..|.|+++
T Consensus       273 ~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll-~~gad~~~~d~~g~t~l~  351 (373)
T 2fo1_E          273 DSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLI-QQGASVEAVDATDHTARQ  351 (373)
T ss_dssp             SSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH-HTTCCSSCCCSSSCCHHH
T ss_pred             CcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCccCCCCCCCCHHH
Confidence            347889999999999999999999999875 999999999999999999999999999995 589999999999999999


Q ss_pred             cccccCccccccc
Q psy12580         84 LKTRSRDATLSRH   96 (239)
Q Consensus        84 ~a~~~~~~~~~~~   96 (239)
                      +|...++..+.+.
T Consensus       352 ~A~~~g~~~iv~~  364 (373)
T 2fo1_E          352 LAQANNHHNIVDI  364 (373)
T ss_dssp             HHHHTTCHHHHHH
T ss_pred             HHHHcCCHHHHHH
Confidence            9998887766553

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.56  E-value=2.7e-15  Score=118.65  Aligned_cols=96  Identities=25%  Similarity=0.288  Sum_probs=69.9

Q ss_pred             CcCccCCCCCchHHHHHHHhCC----HHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccC
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGH----LKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFK   77 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~----~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~   77 (239)
                      .|+|.+|..|+||+|+++..+.    ..++++|+++|+++|.+|..|+||||+|+..|+.+++++|+...+.+++..|..
T Consensus       193 ad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~  272 (337)
T 4g8k_A          193 ADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSD  272 (337)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTT
T ss_pred             CCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCC
Confidence            3677777777777777665443    356777777777877777777888888877777777777766567777777777


Q ss_pred             CCCccccccccCcccccccc
Q psy12580         78 DQSWLGLKTRSRDATLSRHK   97 (239)
Q Consensus        78 ~~t~l~~a~~~~~~~~~~~~   97 (239)
                      |.||+++|...++..+++..
T Consensus       273 G~TpL~~A~~~g~~~iv~~L  292 (337)
T 4g8k_A          273 GKTALLLAVELKLKKIAELL  292 (337)
T ss_dssp             SCBHHHHHHHTTCHHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHH
Confidence            77777777777776665543

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.51  E-value=3e-14  Score=106.84  Aligned_cols=90  Identities=28%  Similarity=0.426  Sum_probs=48.9

Q ss_pred             cCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCC-CCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCc
Q psy12580          3 YVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNR-GDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSW   81 (239)
Q Consensus         3 ~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~-~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (239)
                      +++.+|..|.||||+|+..|+.+++++|++.|++++..+. .|.||||.|+..|+.+++++|+ +.+.+++..+..+.|+
T Consensus        34 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~  112 (240)
T 3eu9_A           34 DVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLM-KYGADPSLIDGEGCSC  112 (240)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTSCCH
T ss_pred             CcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHH-HcCCCCcccCCCCCCH
Confidence            4555555555555555555555555555555555554333 2555555555555555555553 3455555555555555


Q ss_pred             cccccccCcccc
Q psy12580         82 LGLKTRSRDATL   93 (239)
Q Consensus        82 l~~a~~~~~~~~   93 (239)
                      +++|...+...+
T Consensus       113 l~~A~~~~~~~~  124 (240)
T 3eu9_A          113 IHLAAQFGHTSI  124 (240)
T ss_dssp             HHHHHHTTCHHH
T ss_pred             HHHHHHcCHHHH
Confidence            555555544433

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.50  E-value=2.3e-14  Score=113.31  Aligned_cols=131  Identities=19%  Similarity=0.159  Sum_probs=94.9

Q ss_pred             cCccCCCCCchHHHHHHHhCCHHHHHHHHH-CCCCCCccCCCCCCHHHHHHHcCC----HhHHHHHHhhcCCcccccccC
Q psy12580          3 YVSVTDDHGFSPLHWACKEGHLKLVELLLQ-RGARVNATNRGDDTPLHLAAAHGH----LDIVRLLAVQNNQDLTKINFK   77 (239)
Q Consensus         3 ~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~-~g~~~~~~~~~g~t~l~~a~~~g~----~~~v~~Ll~~~~~~~~~~~~~   77 (239)
                      +.+..+..|+||||+|+..|+.+++++|++ .|+++|.+|..|+||++.++..+.    ..++++| .+.|++++..+..
T Consensus       160 ~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lL-l~~gad~n~~d~~  238 (337)
T 4g8k_A          160 DQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLL-LDHGADVNVRGER  238 (337)
T ss_dssp             ----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHH-HHTTCCTTCCCGG
T ss_pred             ccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHH-HHCCCCCCCcCCC
Confidence            456678899999999999999999999996 599999999999999999886554    3466777 5699999999999


Q ss_pred             CCCccccccccCccccccccC-CCCCCCcccccccCCCCCCceeeccCCCceeeeeeeecc
Q psy12580         78 DQSWLGLKTRSRDATLSRHKG-ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRN  137 (239)
Q Consensus        78 ~~t~l~~a~~~~~~~~~~~~~-~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~vk~~~~~~  137 (239)
                      |.|+++++...+.....+... ....++...+.-|+++   .+.|...+...+++.+....
T Consensus       239 g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~Tp---L~~A~~~g~~~iv~~Ll~~G  296 (337)
T 4g8k_A          239 GKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTA---LLLAVELKLKKIAELLCKRG  296 (337)
T ss_dssp             GCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBH---HHHHHHTTCHHHHHHHHTTS
T ss_pred             CCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCH---HHHHHHcCCHHHHHHHHHCC
Confidence            999999999888776555322 1223333333333332   44555566666776665443

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.47  E-value=5.4e-14  Score=105.48  Aligned_cols=128  Identities=22%  Similarity=0.203  Sum_probs=94.6

Q ss_pred             CcCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCC-HhHHHHHHhhcCCccccccc-CCC
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGH-LDIVRLLAVQNNQDLTKINF-KDQ   79 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~-~~~v~~Ll~~~~~~~~~~~~-~~~   79 (239)
                      .+++.+|..|+||||+|+..++.+++++|++.|++++..+..|.||||.|+..++ .+++++| .+.+.+++..+. .|.
T Consensus       100 ~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L-~~~~~~~~~~~~~~g~  178 (240)
T 3eu9_A          100 ADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLL-LTFNVSVNLGDKYHKN  178 (240)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHH-HHTTCCTTCCCTTTCC
T ss_pred             CCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHH-HhcCCCcchhhccCCC
Confidence            4678889999999999999999999999999999999999999999999997666 6777777 568888888776 889


Q ss_pred             CccccccccCccccccccCCCCCCCcccccccCCCCCCceeeccCCCceeeeee
Q psy12580         80 SWLGLKTRSRDATLSRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKIL  133 (239)
Q Consensus        80 t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~vk~~  133 (239)
                      |++++|...+...+.+...-...+....+.-|...   ...+...+...+++.+
T Consensus       179 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~---l~~A~~~~~~~~v~~L  229 (240)
T 3eu9_A          179 TALHWAVLAGNTTVISLLLEAGANVDAQNIKGESA---LDLAKQRKNVWMINHL  229 (240)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBH---HHHHHHTTCHHHHHHH
T ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH---HHHHHHcCcHHHHHHH
Confidence            99999988887766654322223333333223222   3444445555555554

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.39  E-value=2.2e-13  Score=108.69  Aligned_cols=90  Identities=24%  Similarity=0.152  Sum_probs=80.4

Q ss_pred             CCCCCchHHHHHHHh-CCHHHHHHHHHCCCCCCccC--CCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCccc
Q psy12580          7 TDDHGFSPLHWACKE-GHLKLVELLLQRGARVNATN--RGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWLG   83 (239)
Q Consensus         7 ~~~~g~tpl~~a~~~-~~~~~~~~ll~~g~~~~~~~--~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l~   83 (239)
                      .+..+.||||+|+.. ++.+++++|++.|+++|..+  ..|.||||+|+..|+.+++++|+ +.|++++..+..|.|+++
T Consensus       195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL-~~Gadvn~~d~~G~TpLh  273 (368)
T 3jue_A          195 GSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLL-QNGANVNQADSAGRGPLH  273 (368)
T ss_dssp             --CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHH
T ss_pred             ccCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHH-HcCCCCCCCCCCCCCHHH
Confidence            344567899999999 99999999999999999998  89999999999999999999995 589999999999999999


Q ss_pred             cccccCcccccccc
Q psy12580         84 LKTRSRDATLSRHK   97 (239)
Q Consensus        84 ~a~~~~~~~~~~~~   97 (239)
                      +|...++..+.+..
T Consensus       274 ~A~~~g~~~~v~~L  287 (368)
T 3jue_A          274 HATILGHTGLACLF  287 (368)
T ss_dssp             HHHHHTCHHHHHHH
T ss_pred             HHHHcCcHHHHHHH
Confidence            99988887766544

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=99.37  E-value=2.4e-12  Score=98.24  Aligned_cols=108  Identities=8%  Similarity=-0.045  Sum_probs=82.2

Q ss_pred             CCcccccccCCCCCCceeeccCCCceeeeeeeeccCCchHHHHHHHHHhHhhhcC-CCceeeeeeeeeCCCceEEEEeeC
Q psy12580        103 DLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFS-HPNVLPVIGCVNSPPDLVVISQYM  181 (239)
Q Consensus       103 ~~~~~~~ig~g~~g~v~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~-h~~iv~l~~~~~~~~~~~lv~e~~  181 (239)
                      .+.+....+.|+.+.||+....++.+++|+........  ...+.+|..+++.+. +..+.++++++...+..++||||+
T Consensus        15 ~~~~~~~~~g~s~~~v~~~~~~~~~~vlK~~~~~~~~~--~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv~e~i   92 (263)
T 3tm0_A           15 KYRCVKDTEGMSPAKVYKLVGENENLYLKMTDSRYKGT--TYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLMSEA   92 (263)
T ss_dssp             TSEEEECCSCCSSSEEEEEECSSCEEEEEEECGGGTTS--TTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECC
T ss_pred             cceeEeeccCCCCCeEEEEECCCCcEEEEeCCcccCCC--HHHHHHHHHHHHHHhcCCCCCeEEEEEecCCceEEEEEec
Confidence            45566677778888899998777888888876432111  235778999998884 667889999988888899999999


Q ss_pred             CCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhc
Q psy12580        182 AWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS  219 (239)
Q Consensus       182 ~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~  219 (239)
                      +|.+|.+.+..       ......++.+++++|..||+
T Consensus        93 ~G~~l~~~~~~-------~~~~~~~~~~l~~~l~~LH~  123 (263)
T 3tm0_A           93 DGVLCSEEYED-------EQSPEKIIELYAECIRLFHS  123 (263)
T ss_dssp             SSEEHHHHCCT-------TTCHHHHHHHHHHHHHHHHH
T ss_pred             CCeehhhccCC-------cccHHHHHHHHHHHHHHHhC
Confidence            99998876421       12234788899999999998

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.34  E-value=3.7e-14  Score=113.54  Aligned_cols=90  Identities=16%  Similarity=0.231  Sum_probs=71.3

Q ss_pred             cCCCCCchHHHHHHHhCCHHHHHHHHHCCCC---CCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccc--cccCCCC
Q psy12580          6 VTDDHGFSPLHWACKEGHLKLVELLLQRGAR---VNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTK--INFKDQS   80 (239)
Q Consensus         6 ~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~---~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~--~~~~~~t   80 (239)
                      ..|..|+||||+||..|+.++|++|+++|++   ++..+.+ .||||+|+..|+.++|++|+ +.|++++.  .+..|.|
T Consensus       123 ~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll-~~ga~~~~~~~d~~g~T  200 (376)
T 2aja_A          123 VIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLC-ELAPTEATAMIQAENYY  200 (376)
T ss_dssp             --CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHH-HSCGGGHHHHHHHHHHH
T ss_pred             HhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHH-HcCCccchhccCCCCCC
Confidence            3455688999999999999999999999976   2333333 89999999999999999995 57888776  7888899


Q ss_pred             cccccc-ccCcccccccc
Q psy12580         81 WLGLKT-RSRDATLSRHK   97 (239)
Q Consensus        81 ~l~~a~-~~~~~~~~~~~   97 (239)
                      |+++|. ..++..+.+..
T Consensus       201 pL~~Aa~~~G~~eiv~~L  218 (376)
T 2aja_A          201 AFRWAAVGRGHHNVINFL  218 (376)
T ss_dssp             HHHHHHSTTCCHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHH
Confidence            999998 88887766644

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=99.20  E-value=4.7e-11  Score=95.19  Aligned_cols=108  Identities=10%  Similarity=0.091  Sum_probs=77.6

Q ss_pred             cccccCCCCCCceeeccCCCceeeeeee--eccCCchHHHHHHHHHhHhhhcC--CCceeeeeeeeeCC---CceEEEEe
Q psy12580        107 HTKISSGPNGDTWRGRWQKNDIVAKILA--VRNCTPRVSRDFNEEFPKLRIFS--HPNVLPVIGCVNSP---PDLVVISQ  179 (239)
Q Consensus       107 ~~~ig~g~~g~v~~~~~~~~~~~vk~~~--~~~~~~~~~~~~~~e~~~l~~l~--h~~iv~l~~~~~~~---~~~~lv~e  179 (239)
                      .+.++.|.++.+|+....++.+++|...  .... ......+.+|..+++.+.  +..+.+++.++...   +..++|||
T Consensus        43 ~~~l~~G~sn~~y~v~~~~~~~vlr~~~~p~~~~-~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~vme  121 (359)
T 3dxp_A           43 VEQFKGGQSNPTFKLVTPGQTYVMRAKPGPKSKL-LPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFYIME  121 (359)
T ss_dssp             EEECCC-CCSCEEEEECSSCEEEEECCCC-----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEEEEE
T ss_pred             EEEcCCcccceEEEEEECCceEEEEeCCCCCCCC-CCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEEEEE
Confidence            4567889999999998877778887765  3221 112346778999999886  45688888888766   35899999


Q ss_pred             eCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhc
Q psy12580        180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS  219 (239)
Q Consensus       180 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~  219 (239)
                      |++|.++.+...    ..++......++.++++.|..||+
T Consensus       122 ~v~G~~l~~~~~----~~l~~~~~~~~~~~l~~~La~LH~  157 (359)
T 3dxp_A          122 FVSGRVLWDQSL----PGMSPAERTAIYDEMNRVIAAMHT  157 (359)
T ss_dssp             CCCCBCCCCTTC----TTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ecCCeecCCCcc----ccCCHHHHHHHHHHHHHHHHHHhC
Confidence            999877643111    136788889999999999999997

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.18  E-value=5.9e-13  Score=106.54  Aligned_cols=77  Identities=13%  Similarity=0.142  Sum_probs=67.8

Q ss_pred             chHHHHHHHhCCHHHHHHHHHCCCCCCc--cCCCCCCHHHHHH-HcCCHhHHHHHHhhcCCcccccccCCCCcccccccc
Q psy12580         12 FSPLHWACKEGHLKLVELLLQRGARVNA--TNRGDDTPLHLAA-AHGHLDIVRLLAVQNNQDLTKINFKDQSWLGLKTRS   88 (239)
Q Consensus        12 ~tpl~~a~~~~~~~~~~~ll~~g~~~~~--~~~~g~t~l~~a~-~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~   88 (239)
                      +||||+||..|+.+++++|+++|++++.  .|..|+||||+|+ ..|+.++|++|+. .|+       .+.|++++|...
T Consensus       164 ~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~-~ga-------~~~taL~~Aa~~  235 (376)
T 2aja_A          164 YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLD-CPV-------MLAYAEIHEFEY  235 (376)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTT-SHH-------HHHHHHHCTTTT
T ss_pred             CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHh-CCC-------ccchHHHHHHHC
Confidence            8999999999999999999999999998  9999999999999 9999999999964 543       267889888888


Q ss_pred             Cccccccc
Q psy12580         89 RDATLSRH   96 (239)
Q Consensus        89 ~~~~~~~~   96 (239)
                      ++..+.+.
T Consensus       236 g~~evv~l  243 (376)
T 2aja_A          236 GEKYVNPF  243 (376)
T ss_dssp             TTTTHHHH
T ss_pred             CCHHHHHH
Confidence            87765543

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=99.07  E-value=7.1e-10  Score=84.18  Aligned_cols=102  Identities=13%  Similarity=0.094  Sum_probs=68.7

Q ss_pred             CcccccccCCCCCCceeeccC-CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCc--eeeeeeeeeCCCceEEEEee
Q psy12580        104 LSLHTKISSGPNGDTWRGRWQ-KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPN--VLPVIGCVNSPPDLVVISQY  180 (239)
Q Consensus       104 ~~~~~~ig~g~~g~v~~~~~~-~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~--iv~l~~~~~~~~~~~lv~e~  180 (239)
                      +.+....+.|..+.||+.... +..+++|.....     ....+..|..+++.+.+.+  +.+++++...++..++||||
T Consensus        22 ~~~~~~~~gg~~~~v~~~~~~~g~~~vlK~~~~~-----~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v~e~   96 (264)
T 1nd4_A           22 YDWAQQTIGCSDAAVFRLSAQGRPVLFVKTDLSG-----ALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGE   96 (264)
T ss_dssp             CEEEECSCTTSSCEEEEEECTTSCCEEEEEECSC-----TTSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEEC
T ss_pred             CceEecccCCCCceEEEEecCCCCeEEEEeCCcc-----cchhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEEEEe
Confidence            344333345666889998764 456778876432     1134678888888885433  66788888877789999999


Q ss_pred             CCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcC
Q psy12580        181 MAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSL  220 (239)
Q Consensus       181 ~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~  220 (239)
                      ++|.+|.  ...     .+   ...++.++++.|..||+.
T Consensus        97 i~G~~l~--~~~-----~~---~~~~~~~l~~~l~~lh~~  126 (264)
T 1nd4_A           97 VPGQDLL--SSH-----LA---PAEKVSIMADAMRRLHTL  126 (264)
T ss_dssp             CSSEETT--TSC-----CC---HHHHHHHHHHHHHHHTTS
T ss_pred             cCCcccC--cCc-----CC---HhHHHHHHHHHHHHHhCC
Confidence            9998874  211     11   235677788888888874

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=98.59  E-value=1.7e-07  Score=72.79  Aligned_cols=100  Identities=18%  Similarity=0.049  Sum_probs=68.7

Q ss_pred             cccCCCCCCceeeccCCCceeeeeeeeccCCchHHHHHHHHHhHhhhcC-CC--ceeeeeeeeeCCC---ceEEEEeeCC
Q psy12580        109 KISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFS-HP--NVLPVIGCVNSPP---DLVVISQYMA  182 (239)
Q Consensus       109 ~ig~g~~g~v~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~-h~--~iv~l~~~~~~~~---~~~lv~e~~~  182 (239)
                      .++.|....+|+..   +.+++|+...    ......+.+|..+++.+. +.  .+.+.+......+   ..|+|||+++
T Consensus        27 ~~~~G~~n~v~~v~---~~~vlR~~~~----~~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~vm~~i~   99 (304)
T 3sg8_A           27 ISGEGNDCIAYEIN---RDFIFKFPKH----SRGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGFTKIK   99 (304)
T ss_dssp             EEEECSSEEEEEST---TSEEEEEESS----HHHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEEEECCC
T ss_pred             ecCCCCcceEEEEC---CEEEEEecCC----cchHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEEEcccC
Confidence            47788888888764   5577776432    233467888999998873 32  2455555544333   3588999999


Q ss_pred             CCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhc
Q psy12580        183 WGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS  219 (239)
Q Consensus       183 ~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~  219 (239)
                      |.+|.+....    .++..+...++.|+++.|..||+
T Consensus       100 G~~l~~~~~~----~l~~~~~~~~~~~l~~~la~LH~  132 (304)
T 3sg8_A          100 GVPLTPLLLN----NLPKQSQNQAAKDLARFLSELHS  132 (304)
T ss_dssp             CEECCHHHHH----TSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CeECCccccc----cCCHHHHHHHHHHHHHHHHHHHc
Confidence            9887654332    36777788888888888888886

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=98.52  E-value=1.2e-06  Score=68.03  Aligned_cols=101  Identities=16%  Similarity=0.034  Sum_probs=65.5

Q ss_pred             ccccCCCCCCceeeccCCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCC---ceeeeeeeee-CCCceEEEEeeCCC
Q psy12580        108 TKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHP---NVLPVIGCVN-SPPDLVVISQYMAW  183 (239)
Q Consensus       108 ~~ig~g~~g~v~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~---~iv~l~~~~~-~~~~~~lv~e~~~~  183 (239)
                      +.++.|....+|+.   ++.+++|+-.    .......+..|..+|+.+.+.   .+.+.+.+.. ..+..++||||++|
T Consensus        25 ~~l~~G~~n~v~~v---g~~~VlR~~~----~~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~~~v~e~i~G   97 (306)
T 3tdw_A           25 ESLGEGFRNYAILV---NGDWVFRFPK----SQQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYRKVQG   97 (306)
T ss_dssp             EEEEECSSEEEEEE---TTTEEEEEES----SHHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCEEEEEECCCS
T ss_pred             eecCCCcceeEEEE---CCEEEEEecC----CchHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCceEEEEeccCC
Confidence            34677777778877   5677777632    223346788999999998642   3566666664 44567899999999


Q ss_pred             CCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhc
Q psy12580        184 GSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS  219 (239)
Q Consensus       184 gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~  219 (239)
                      .++.+....    .++......++.++++.|..||+
T Consensus        98 ~~l~~~~~~----~l~~~~~~~~~~~lg~~La~LH~  129 (306)
T 3tdw_A           98 QILGEDGMA----VLPDDAKDRLALQLAEFMNELSA  129 (306)
T ss_dssp             EECHHHHHT----TSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             eECchhhhh----hCCHHHHHHHHHHHHHHHHHHhc
Confidence            887663221    23445555555555555555554

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=98.43  E-value=1.2e-06  Score=66.75  Aligned_cols=98  Identities=16%  Similarity=0.198  Sum_probs=64.7

Q ss_pred             cCCCCC-Cceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcC-CCceeeeeeeeeCCCceEEEEeeCCCCCH
Q psy12580        111 SSGPNG-DTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFS-HPNVLPVIGCVNSPPDLVVISQYMAWGSL  186 (239)
Q Consensus       111 g~g~~g-~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~-h~~iv~l~~~~~~~~~~~lv~e~~~~gsL  186 (239)
                      ..|..+ .||+...  .+..+++|.-...     ....+.+|...|+.+. +--|.++++++..++..++|||+++|.++
T Consensus        33 ~~G~S~~~v~rl~~~~~~~~~~lk~~~~~-----~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~lvme~l~G~~~  107 (272)
T 4gkh_A           33 NVGQSGATIYRLYGKPNAPELFLKHGKGS-----VANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTTAIPGKTA  107 (272)
T ss_dssp             ECSSSSCEEEEEECCTTCCCEEEEEEETH-----HHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCCSEEH
T ss_pred             cCCCcCCeEEEEEecCCCeEEEEEECCCC-----CHhHHHHHHHHHHHhccCCCcCeEEEEEEECCeEEEEEEeeCCccc
Confidence            334444 4787654  2345677765422     2356778998888774 33477888888888889999999999888


Q ss_pred             HHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhc
Q psy12580        187 YALLHEGAGIVVDFAQALRFAVDVARGMAFLHS  219 (239)
Q Consensus       187 ~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~  219 (239)
                      .+......      .....+..+++..|.-||+
T Consensus       108 ~~~~~~~~------~~~~~~~~~l~~~L~~Lh~  134 (272)
T 4gkh_A          108 FQVLEEYP------DSGENIVDALAVFLRRLHS  134 (272)
T ss_dssp             HHHHHHCG------GGHHHHHHHHHHHHHHHHT
T ss_pred             cccccCCH------HHHHHHHHHHHHHHHHhcC
Confidence            77654322      2233456666666666665

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=97.93  E-value=1.9e-05  Score=62.62  Aligned_cols=80  Identities=13%  Similarity=0.083  Sum_probs=49.5

Q ss_pred             ccc-cCCCCCCceeeccC--------CCceeeeeeeeccC-CchHHHHHHHHHhHhhhcC-C--CceeeeeeeeeCC---
Q psy12580        108 TKI-SSGPNGDTWRGRWQ--------KNDIVAKILAVRNC-TPRVSRDFNEEFPKLRIFS-H--PNVLPVIGCVNSP---  171 (239)
Q Consensus       108 ~~i-g~g~~g~v~~~~~~--------~~~~~vk~~~~~~~-~~~~~~~~~~e~~~l~~l~-h--~~iv~l~~~~~~~---  171 (239)
                      +.+ +.|....+|+....        ++.+++|.-..... .......+..|..+++.+. +  ..+.+++.++...   
T Consensus        26 ~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~~~~  105 (357)
T 3ats_A           26 SGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTGDVL  105 (357)
T ss_dssp             EEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSSTTT
T ss_pred             EECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCCCcc
Confidence            456 66777788887654        45667766543220 0000134667888887763 2  3577788877655   


Q ss_pred             CceEEEEeeCCCCCHH
Q psy12580        172 PDLVVISQYMAWGSLY  187 (239)
Q Consensus       172 ~~~~lv~e~~~~gsL~  187 (239)
                      +..++||||++|.++.
T Consensus       106 g~~~~v~e~l~G~~l~  121 (357)
T 3ats_A          106 GTPFFLMDYVEGVVPP  121 (357)
T ss_dssp             SSCEEEEECCCCBCCC
T ss_pred             CCceEEEEecCCCChh
Confidence            3568999999886653

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=97.60  E-value=0.00012  Score=58.92  Aligned_cols=76  Identities=13%  Similarity=-0.024  Sum_probs=46.7

Q ss_pred             cccccCCCCCCceeecc--CCCceeeeeeeeccC--C---chHHHHHHHHHhHhhhcCC--C-ceeeeeeeeeCCCceEE
Q psy12580        107 HTKISSGPNGDTWRGRW--QKNDIVAKILAVRNC--T---PRVSRDFNEEFPKLRIFSH--P-NVLPVIGCVNSPPDLVV  176 (239)
Q Consensus       107 ~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~--~---~~~~~~~~~e~~~l~~l~h--~-~iv~l~~~~~~~~~~~l  176 (239)
                      .+.+|.|.++.||++..  .++.+++|.......  .   +.....+..|..++..+..  | .+.+++.+.  .+..++
T Consensus        35 ~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~d--~~~~~l  112 (397)
T 2olc_A           35 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYSD--TEMAVT  112 (397)
T ss_dssp             EEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEEE--TTTTEE
T ss_pred             EEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEEc--CCccEE
Confidence            35689999999999965  456778887643211  0   1112345678888887632  3 345566543  345689


Q ss_pred             EEeeCCCC
Q psy12580        177 ISQYMAWG  184 (239)
Q Consensus       177 v~e~~~~g  184 (239)
                      |||++++.
T Consensus       113 vmE~l~g~  120 (397)
T 2olc_A          113 VMEDLSHL  120 (397)
T ss_dssp             EECCCTTS
T ss_pred             EEEeCCCc
Confidence            99999764

>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}

Probab=97.53  E-value=0.00039  Score=53.29  Aligned_cols=76  Identities=14%  Similarity=0.126  Sum_probs=49.9

Q ss_pred             CcccccccCCCCCCceeeccC-CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCC---CceeeeeeeeeCCCceEEEEe
Q psy12580        104 LSLHTKISSGPNGDTWRGRWQ-KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSH---PNVLPVIGCVNSPPDLVVISQ  179 (239)
Q Consensus       104 ~~~~~~ig~g~~g~v~~~~~~-~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h---~~iv~l~~~~~~~~~~~lv~e  179 (239)
                      +...+.+|.|..+.||+.+.. |+.+++|+-....  ......+..|...|+.+..   --+.+.+++.    .-++|||
T Consensus        17 v~~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~--~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~~----~~~lv~e   90 (288)
T 3f7w_A           17 VAAVAERGHSHRWHLYRVELADGTPLFVKALPDDA--PALDGLFRAEALGLDWLGRSFGSPVPQVAGWD----DRTLAME   90 (288)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTSCEEEEEECCTTC--CCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE----TTEEEEE
T ss_pred             eEEEEecCCCCCeEEEEEEECCCCEEEEEEeCCCC--cchhhHHHHHHHHHHHHHhhCCCCcceEEecc----CceEEEE
Confidence            344567888999999999875 5677777654332  2222457789888887742   2355555542    2478999


Q ss_pred             eCCCCC
Q psy12580        180 YMAWGS  185 (239)
Q Consensus       180 ~~~~gs  185 (239)
                      |++++.
T Consensus        91 ~l~~~~   96 (288)
T 3f7w_A           91 WVDERP   96 (288)
T ss_dssp             CCCCCC
T ss_pred             eecccC
Confidence            987654

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=97.50  E-value=0.0005  Score=53.85  Aligned_cols=73  Identities=10%  Similarity=0.059  Sum_probs=39.2

Q ss_pred             ccccCCCCCCceeeccCCCceeeeeeeeccCCchHHHHHHHHHhHhhhcC--CCceeeeeee------eeCCCceEEEEe
Q psy12580        108 TKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFS--HPNVLPVIGC------VNSPPDLVVISQ  179 (239)
Q Consensus       108 ~~ig~g~~g~v~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~--h~~iv~l~~~------~~~~~~~~lv~e  179 (239)
                      +.++.|..+.+|+....++.+++|....   ..   .....|..++..+.  .-.+.+++..      ....+..++++|
T Consensus        38 ~~l~gG~~n~~~~v~~~~~~~vlk~~~~---~~---~~~~~e~~~l~~L~~~g~~vp~~~~~~~g~~~~~~~~~~~~l~~  111 (346)
T 2q83_A           38 DVIQGNQMALVWKVHTDSGAVCLKRIHR---PE---KKALFSIFAQDYLAKKGMNVPGILPNKKGSLYSKHGSFLFVVYD  111 (346)
T ss_dssp             EECC----CEEEEEEETTEEEEEEEECS---CH---HHHHHHHHHHHHHHHHTCSSCCBCCCTTSCSCEEETTEEEEEEE
T ss_pred             eeccccccCcEEEEEeCCCCEEEEecCC---CH---HHHHHHHHHHHHHHHcCCCCCceeecCCCCEEEEECCEEEEEEE
Confidence            3455567788999887666777777753   12   22333444444432  1133444331      123456789999


Q ss_pred             eCCCCCH
Q psy12580        180 YMAWGSL  186 (239)
Q Consensus       180 ~~~~gsL  186 (239)
                      |++|.++
T Consensus       112 ~i~G~~~  118 (346)
T 2q83_A          112 WIEGRPF  118 (346)
T ss_dssp             CCCCBCC
T ss_pred             eecCccC
Confidence            9988543

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}

Probab=97.19  E-value=0.0017  Score=50.34  Aligned_cols=95  Identities=20%  Similarity=0.160  Sum_probs=71.0

Q ss_pred             ccccccCCCCCCceeeccCCCceeeeeeeeccCCchHHHHHHHHHhHhhhcC---CCceeeeeeeeeCCCceEEEEeeCC
Q psy12580        106 LHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFS---HPNVLPVIGCVNSPPDLVVISQYMA  182 (239)
Q Consensus       106 ~~~~ig~g~~g~v~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~---h~~iv~l~~~~~~~~~~~lv~e~~~  182 (239)
                      ..+.++.|.+..+|+....++.+++|+....     ....+..|...|+.+.   ...+.+.+++....+..++||||++
T Consensus        40 ~~~~l~gG~~n~~y~v~~~~~~~vlK~~~~~-----~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~~~lvme~l~  114 (312)
T 3jr1_A           40 HKEKLYSGEMNEIWLINDEVQTVFVKINERS-----YRSMFRAEADQLALLAKTNSINVPLVYGIGNSQGHSFLLLEALN  114 (312)
T ss_dssp             EEEEECCSSSSEEEEEESSSCEEEEEEEEGG-----GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSEEEEEEECCC
T ss_pred             eeEEeCCccceeeeEEEECCCeEEEEeCCcc-----cHHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCceEEEEEecc
Confidence            3456788888999998877778888776532     2456788888888773   3568888888877778999999999


Q ss_pred             CCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCC
Q psy12580        183 WGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLE  221 (239)
Q Consensus       183 ~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~  221 (239)
                      +.++.            .    ..+.++.+.|.-||+..
T Consensus       115 G~~~~------------~----~~~~~lG~~LA~LH~~~  137 (312)
T 3jr1_A          115 KSKNK------------Q----SSFTIFAEKIAQLHQIQ  137 (312)
T ss_dssp             CCCCC------------T----THHHHHHHHHHHHHHCC
T ss_pred             CCCCC------------c----hhHHHHHHHHHHHHcCC
Confidence            86531            1    24567888899999864

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=96.89  E-value=0.0078  Score=48.70  Aligned_cols=75  Identities=11%  Similarity=-0.045  Sum_probs=43.2

Q ss_pred             cccccCCCCCCceeeccCCCceeeeeeeecc--CCch-----HHHHHHHHHhHhh-hcCCCceeeeeeeeeCCCceEEEE
Q psy12580        107 HTKISSGPNGDTWRGRWQKNDIVAKILAVRN--CTPR-----VSRDFNEEFPKLR-IFSHPNVLPVIGCVNSPPDLVVIS  178 (239)
Q Consensus       107 ~~~ig~g~~g~v~~~~~~~~~~~vk~~~~~~--~~~~-----~~~~~~~e~~~l~-~l~h~~iv~l~~~~~~~~~~~lv~  178 (239)
                      .+.+|.|..+.+|+....++.+++|......  ..+.     ....+..|+..+. ......+.+++.+.  .+..++||
T Consensus        39 i~~l~~G~~n~vyrv~~~~~~~vvK~~~p~~~~~~~~~~~~~~~~~~E~e~l~~~~~~~~~~vP~v~~~~--~~~~~lv~  116 (420)
T 2pyw_A           39 IKEVGDGNLNFVFIVVGSSGSLVIKQALPYIRCIGESWPMTKERAYFEATTLRKHGNLSPDHVPEVYHFD--RTMALIGM  116 (420)
T ss_dssp             EEECCCSSSCEEEEEECSSCEEEEEECCSBCTTTCTTSBCCTTHHHHHHHHHHHHHHHSGGGSCCEEEEE--TTTTEEEE
T ss_pred             EEEccCCCcEEEEEEEcCCceEEEEECchhhcccCcccccchhHHHHHHHHHHHHHhhCCCCCCeEEEEC--CCccEEEE
Confidence            3457888889999987766778888432210  0110     1122333333222 22234566777665  45678999


Q ss_pred             eeC-CC
Q psy12580        179 QYM-AW  183 (239)
Q Consensus       179 e~~-~~  183 (239)
                      ||+ ++
T Consensus       117 e~l~~g  122 (420)
T 2pyw_A          117 RYLEPP  122 (420)
T ss_dssp             CCCCTT
T ss_pred             eecCCc
Confidence            999 76

>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}

Probab=96.78  E-value=0.0084  Score=46.78  Aligned_cols=74  Identities=5%  Similarity=-0.039  Sum_probs=35.7

Q ss_pred             ccCCCCCC-ceeeccC-CCceeeeeeeeccCCchHHHHHHHHHhHhhhcC--CCceeeeeeeeeCCCceEEEEeeCCCCC
Q psy12580        110 ISSGPNGD-TWRGRWQ-KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFS--HPNVLPVIGCVNSPPDLVVISQYMAWGS  185 (239)
Q Consensus       110 ig~g~~g~-v~~~~~~-~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~--h~~iv~l~~~~~~~~~~~lv~e~~~~gs  185 (239)
                      ++.|.... +|+.... ++.+++|.......     ..+..|..++..+.  .-.+.+++.+....+  +++||++++.+
T Consensus        26 l~gg~s~~~~~r~~~~~~~~~vlk~~~~~~~-----~~~~~e~~~l~~L~~~g~~vP~v~~~d~~~g--~ll~e~l~~~~   98 (333)
T 3csv_A           26 LAGDASSRRYQRLRSPTGAKAVLMDWSPEEG-----GDTQPFVDLAQYLRNLDISAPEIYAEEHARG--LLLIEDLGDAL   98 (333)
T ss_dssp             --------CCEEEECTTCCEEEEEECCTTTT-----CCSHHHHHHHHHHHHTTCBCCCEEEEETTTT--EEEECCCCSCB
T ss_pred             CCCCCCCceEEEEEcCCCCeEEEEECCCCCC-----ccccHHHHHHHHHHhCCCCCCceeeecCCCC--EEEEeeCCCcc
Confidence            33343333 5666553 55555554322110     12334566665552  234566666643333  78999997767


Q ss_pred             HHHHh
Q psy12580        186 LYALL  190 (239)
Q Consensus       186 L~~~l  190 (239)
                      +.+++
T Consensus        99 l~~~l  103 (333)
T 3csv_A           99 FTEVI  103 (333)
T ss_dssp             HHHHH
T ss_pred             hHHHh
Confidence            66544

>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}

Probab=96.66  E-value=0.0068  Score=46.61  Aligned_cols=71  Identities=15%  Similarity=0.161  Sum_probs=39.6

Q ss_pred             cccccCCCCCCceeeccCCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCce-eeeeeeeeCCCceEEEEeeC-CCC
Q psy12580        107 HTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNV-LPVIGCVNSPPDLVVISQYM-AWG  184 (239)
Q Consensus       107 ~~~ig~g~~g~v~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-v~l~~~~~~~~~~~lv~e~~-~~g  184 (239)
                      .+.++.|....+|+.    +.+++|+-......   ......|..+++.+....+ .++++..  ++.-++++||+ ++.
T Consensus        23 i~~l~gG~tN~~~~~----~~~vlR~~~~~~~~---~~~r~~E~~~l~~l~~~g~~P~~~~~~--~~~~~~v~e~i~~g~   93 (301)
T 3dxq_A           23 PLERLGGLTNLVFRA----GDLCLRIPGKGTEE---YINRANEAVAAREAAKAGVSPEVLHVD--PATGVMVTRYIAGAQ   93 (301)
T ss_dssp             CEEEESCSSEEEEEE----TTEEEEEECC-------CCCHHHHHHHHHHHHHTTSSCCEEEEC--TTTCCEEEECCTTCE
T ss_pred             eeEcCCcccccccee----eeEEEECCCCCccc---eeCHHHHHHHHHHHHHcCCCCceEEEE--CCCCEEEEeecCCCc
Confidence            456777888889988    56777766432111   0112356666665532111 4555543  33347899999 554


Q ss_pred             CH
Q psy12580        185 SL  186 (239)
Q Consensus       185 sL  186 (239)
                      ++
T Consensus        94 ~l   95 (301)
T 3dxq_A           94 TM   95 (301)
T ss_dssp             EC
T ss_pred             cC
Confidence            43

>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6

Probab=96.21  E-value=0.036  Score=42.97  Aligned_cols=72  Identities=10%  Similarity=0.026  Sum_probs=42.0

Q ss_pred             ccCCCCCCceeeccCC-CceeeeeeeeccCCchHHHHHHHHHhHhhhcCC--Cceeeeeee-----eeCCCceEEEEeeC
Q psy12580        110 ISSGPNGDTWRGRWQK-NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSH--PNVLPVIGC-----VNSPPDLVVISQYM  181 (239)
Q Consensus       110 ig~g~~g~v~~~~~~~-~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h--~~iv~l~~~-----~~~~~~~~lv~e~~  181 (239)
                      ++ |....+|+....+ ..+++|........   ...+..|..++..+..  -.+++++..     ....+..++++||+
T Consensus        34 l~-g~~n~~y~v~~~~g~~~vlK~~~~~~~~---~~~~~~E~~~~~~L~~~g~~vp~~~~~~g~~~~~~~g~~~~l~~~i  109 (328)
T 1zyl_A           34 LN-SYENRVYQFQDEDRRRFVVKFYRPERWT---ADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVFPSV  109 (328)
T ss_dssp             EC-CSSSEEEEECCTTCCCEEEEEECTTTSC---HHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETTEEEEEEECC
T ss_pred             ec-CcccceEEEEcCCCCEEEEEEcCCCCCC---HHHHHHHHHHHHHHHHcCCeecceeecCCcEEEEECCEEEEEEEec
Confidence            44 6667789887644 46888887533222   2345567777766631  224444443     11234567899999


Q ss_pred             CCCC
Q psy12580        182 AWGS  185 (239)
Q Consensus       182 ~~gs  185 (239)
                      +|.+
T Consensus       110 ~G~~  113 (328)
T 1zyl_A          110 GGRQ  113 (328)
T ss_dssp             CCEE
T ss_pred             CCCC
Confidence            8743

>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6

Probab=96.04  E-value=0.024  Score=43.90  Aligned_cols=74  Identities=7%  Similarity=0.017  Sum_probs=40.7

Q ss_pred             ccccCCCCCCceeeccCCCceeeeeeeeccCCchHHHHHHHHHhHhhhcC-C-Cceeeeeeee------eCCCceEEEEe
Q psy12580        108 TKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFS-H-PNVLPVIGCV------NSPPDLVVISQ  179 (239)
Q Consensus       108 ~~ig~g~~g~v~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~-h-~~iv~l~~~~------~~~~~~~lv~e  179 (239)
                      +.++.|....+|+....++.+++|+..... ..   ..+..|..++..+. + -.+.+++...      ...+..+++++
T Consensus        28 ~~i~~G~~n~~~~v~~~~g~~vlk~~~~~~-~~---~~l~~e~~~l~~L~~~g~~vP~~~~~~~g~~~~~~~g~~~~l~~  103 (322)
T 2ppq_A           28 KGIAEGVENSNFLLHTTKDPLILTLYEKRV-EK---NDLPFFLGLMQHLAAKGLSCPLPLPRKDGELLGELSGRPAALIS  103 (322)
T ss_dssp             EEECC---EEEEEEEESSCCEEEEEECC----C---CHHHHHHHHHHHHHHTTCCCCCBCCBTTCCSCEEETTEEEEEEE
T ss_pred             eccCCCcccceEEEEeCCccEEEEEeCCCC-CH---HHHHHHHHHHHHHHHCCCCCCcccCCCCCCEEEEECCEEEEEEE
Confidence            456667777889887766778888775421 11   23445666666552 1 1233443221      12345789999


Q ss_pred             eCCCCC
Q psy12580        180 YMAWGS  185 (239)
Q Consensus       180 ~~~~gs  185 (239)
                      |++|.+
T Consensus       104 ~l~G~~  109 (322)
T 2ppq_A          104 FLEGMW  109 (322)
T ss_dssp             CCCCBC
T ss_pred             eCCCcC
Confidence            998754

>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8

Probab=95.62  E-value=0.022  Score=46.25  Aligned_cols=70  Identities=13%  Similarity=0.150  Sum_probs=41.9

Q ss_pred             ccccCCCCCCceeeccC---------CCceeeeeeeeccCCchHHHHHHHHHhHhhhcC-CCceeeeeeeeeCCCceEEE
Q psy12580        108 TKISSGPNGDTWRGRWQ---------KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFS-HPNVLPVIGCVNSPPDLVVI  177 (239)
Q Consensus       108 ~~ig~g~~g~v~~~~~~---------~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~-h~~iv~l~~~~~~~~~~~lv  177 (239)
                      +.++.|....+|+....         ++.+++|+-... ..   ...+..|..++..+. +.-..++++.+..    .+|
T Consensus        79 ~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~-~~---~~~li~E~~~l~~L~~~g~~P~l~~~~~~----g~v  150 (429)
T 1nw1_A           79 SRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNP-ET---ESHLVAESVIFTLLSERHLGPKLYGIFSG----GRL  150 (429)
T ss_dssp             EEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSC-CC---HHHHHHHHHHHHHHHHTTSSSCEEEEETT----EEE
T ss_pred             EEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCC-Cc---HHHHHHHHHHHHHHHhCCCCCcEEEEeCC----CEE
Confidence            45666777788988764         245566655221 11   134557888888774 2223566766542    389


Q ss_pred             EeeCCCCC
Q psy12580        178 SQYMAWGS  185 (239)
Q Consensus       178 ~e~~~~gs  185 (239)
                      +||++|.+
T Consensus       151 ~e~l~G~~  158 (429)
T 1nw1_A          151 EEYIPSRP  158 (429)
T ss_dssp             ECCCCEEE
T ss_pred             EEEeCCcc
Confidence            99997633

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A

Probab=94.46  E-value=0.0083  Score=49.21  Aligned_cols=61  Identities=5%  Similarity=-0.093  Sum_probs=16.1

Q ss_pred             ccccccCCCCCCceeeccCC--Cceee------eeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeee
Q psy12580        106 LHTKISSGPNGDTWRGRWQK--NDIVA------KILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVN  169 (239)
Q Consensus       106 ~~~~ig~g~~g~v~~~~~~~--~~~~v------k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~  169 (239)
                      +.+.+|   ||.||+|.+.+  .+|++      |..............+.+|..++...+|||+++.+++..
T Consensus       146 l~~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~~~~e~~~~~~rea~l~~~~~H~niv~~h~f~~  214 (463)
T 3cxl_A          146 IYEHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFKV  214 (463)
T ss_dssp             STTTSS---BCCC---------CCBGGGC-----------------------------------CBCCCEEE
T ss_pred             ccccCC---chhhhcccccccCCchhhhhccCccccccccccccccccccccccccccccccccCCCcceEE
Confidence            345565   99999999965  46777      554433333444456888999999999999999877653

>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*

Probab=89.17  E-value=0.72  Score=36.66  Aligned_cols=71  Identities=13%  Similarity=0.144  Sum_probs=38.2

Q ss_pred             cccCCCCCCceeeccC---------CCceeeeeeeeccCCchHHHHHHHHHhHhhhcC-CCceeeeeeeeeCCCceEEEE
Q psy12580        109 KISSGPNGDTWRGRWQ---------KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFS-HPNVLPVIGCVNSPPDLVVIS  178 (239)
Q Consensus       109 ~ig~g~~g~v~~~~~~---------~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~-h~~iv~l~~~~~~~~~~~lv~  178 (239)
                      .+..|-...+|+....         ++.+++++-..  . ........+|..+++.+. +.-..++++.+..    .+|+
T Consensus        57 ~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~--~-~~~~~~~~rE~~vl~~L~~~gv~P~ll~~~~~----g~v~  129 (379)
T 3feg_A           57 PVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGA--I-LQGVDSLVLESVMFAILAERSLGPQLYGVFPE----GRLE  129 (379)
T ss_dssp             EC-----CCEEEEECCTTSCCCSSCCSEEEEEECC------CCHHHHHHHHHHHHHHHHTTSSCCEEEEETT----EEEE
T ss_pred             EcCCcccccEEEEEeCCCccccCCCCCeEEEEECCC--c-cchHHHHHHHHHHHHHHHhcCCCCeEEEEcCC----ccEE
Confidence            3445666678877653         24455555311  1 112244568888888773 3223566766643    2999


Q ss_pred             eeCCCCCH
Q psy12580        179 QYMAWGSL  186 (239)
Q Consensus       179 e~~~~gsL  186 (239)
                      ||++|.+|
T Consensus       130 e~i~G~~l  137 (379)
T 3feg_A          130 QYIPSRPL  137 (379)
T ss_dssp             ECCSEEEC
T ss_pred             EEecCccC
Confidence            99987554

>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}

Probab=84.24  E-value=1.2  Score=36.31  Aligned_cols=96  Identities=13%  Similarity=0.113  Sum_probs=54.4

Q ss_pred             ccccCCCCCCceeeccCC--CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCc-eeeeeeeeeCCCceEEEEeeCCCC
Q psy12580        108 TKISSGPNGDTWRGRWQK--NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPN-VLPVIGCVNSPPDLVVISQYMAWG  184 (239)
Q Consensus       108 ~~ig~g~~g~v~~~~~~~--~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~-iv~l~~~~~~~~~~~lv~e~~~~g  184 (239)
                      +.++.|....+|+....+  ..+++|+-....  ... -....|..++..+...+ ..++++.+. +   .+|+||++|.
T Consensus       114 ~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~--~~~-idR~~E~~vl~~L~~~gl~P~ll~~~~-~---G~v~e~I~G~  186 (458)
T 2qg7_A          114 QIINGGITNILIKVKDMSKQAKYLIRLYGPKT--DEI-INREREKKISCILYNKNIAKKIYVFFT-N---GRIEEFMDGY  186 (458)
T ss_dssp             EEECC--CEEEEEEEETTTTEEEEEEEECC-C--CSC-SCHHHHHHHHHHHTTSSSBCCEEEEET-T---EEEEECCCSE
T ss_pred             EEcCCCeEeEEEEEEECCCCceEEEEECCCCh--hhh-cCHHHHHHHHHHHHhcCCCCCEEEEeC-C---eEEEEeeCCc
Confidence            456777778899988765  566666553221  111 11247888888875433 356777763 2   3599999875


Q ss_pred             CHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcC
Q psy12580        185 SLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSL  220 (239)
Q Consensus       185 sL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~  220 (239)
                      +|..    .   .+..   ..++.++++.|.-||+.
T Consensus       187 ~l~~----~---~l~~---~~~~~~ia~~La~LH~~  212 (458)
T 2qg7_A          187 ALSR----E---DIKN---PKFQKLIAKNLKLLHDI  212 (458)
T ss_dssp             ECCT----T---TTTS---HHHHHHHHHHHHHHHTC
T ss_pred             cCCh----h---hcCC---HHHHHHHHHHHHHHhcC
Confidence            5421    1   1111   13566677777777753

>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}

Probab=82.38  E-value=2.2  Score=34.49  Aligned_cols=96  Identities=19%  Similarity=0.160  Sum_probs=50.5

Q ss_pred             ccccCCCCCCceeeccC---------CCceeeeeeeeccCCchHHHHHHHHHhHhhhcC-CCceeeeeeeeeCCCceEEE
Q psy12580        108 TKISSGPNGDTWRGRWQ---------KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFS-HPNVLPVIGCVNSPPDLVVI  177 (239)
Q Consensus       108 ~~ig~g~~g~v~~~~~~---------~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~-h~~iv~l~~~~~~~~~~~lv  177 (239)
                      +.+..|....+|+....         +..+++++-....  . ..-...+|..+++.+. +.-..++++.+.    -++|
T Consensus        76 ~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlRi~g~~t--~-~~idR~~E~~~l~~L~~~gi~P~l~~~~~----~~~I  148 (424)
T 3mes_A           76 KQIFSGLTNQLFVVSIVNESMSLSLKHPRILFRIYGKHV--G-KFYDSKVELDVFRYLSNINIAPNIIADFP----EGRI  148 (424)
T ss_dssp             EEECCCSSSEEEEEEECCC-----CCCSEEEEEECCCCC----CCCCHHHHHHHHHHHHHTTSSCCEEEEET----TEEE
T ss_pred             EEcCCCcccceEEEEeCCCcccccCCCCeEEEEECCCCc--c-hhcCHHHHHHHHHHHHhcCCCCCEEEEcC----CCEE
Confidence            34555666778887764         4556665542211  1 1112346777777663 222455555432    2789


Q ss_pred             EeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcC
Q psy12580        178 SQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSL  220 (239)
Q Consensus       178 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~  220 (239)
                      +||++|.+|..-       .+..   ..++.++++.|.-||+.
T Consensus       149 ~efI~G~~l~~~-------~l~~---~~~~~~ia~~La~LH~~  181 (424)
T 3mes_A          149 EEFIDGEPLTTK-------QLQL---THICVEVAKNMGSLHII  181 (424)
T ss_dssp             EECCCSEECCTG-------GGGS---HHHHHHHHHHHHHHHTH
T ss_pred             EEEeCCccCChh-------hcCC---HHHHHHHHHHHHHHhcC
Confidence            999988543210       1111   12455666666666654

>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*

Probab=82.24  E-value=10  Score=29.27  Aligned_cols=92  Identities=7%  Similarity=0.036  Sum_probs=51.5

Q ss_pred             cCCCCCCceeeccCCCceeeeeeeeccCCchHHHHHHHHHhHhhhc---CCCceeeeeee------eeCCCceEEEEeeC
Q psy12580        111 SSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIF---SHPNVLPVIGC------VNSPPDLVVISQYM  181 (239)
Q Consensus       111 g~g~~g~v~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l---~h~~iv~l~~~------~~~~~~~~lv~e~~  181 (239)
                      |.|....+|+....++.+++|+......        ..|..++..+   .-|.+++.+..      ....+..+++|||+
T Consensus        32 G~g~~N~vy~v~~~~g~~vLK~~~~~~~--------~~E~~~l~~L~~~g~~~vp~pi~~~~G~~~~~~~g~~~~l~~~i  103 (339)
T 3i1a_A           32 GADTNAFAYQADSESKSYFIKLKYGYHD--------EINLSIIRLLHDSGIKEIIFPIHTLEAKLFQQLKHFKIIAYPFI  103 (339)
T ss_dssp             TSCSSCEEEEEECSSCEEEEEEEECSSC--------CHHHHHHHHHHHTTCCSSCCCCCCTTSCSSEECSSEEEEEEECC
T ss_pred             cCccccceEEEEeCCCCEEEEEecCccc--------hHHHHHHHHHHhcCCcccccceecCCCCEEEEECCEEEEEEecc
Confidence            3444567899887666788887654321        2344444443   12224444432      12345679999999


Q ss_pred             CCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCC
Q psy12580        182 AWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLE  221 (239)
Q Consensus       182 ~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~  221 (239)
                      +|..+.    ..   .++...    +.++.+.|.-||...
T Consensus       104 ~G~~~~----~~---~~~~~~----~~~lg~~La~LH~~~  132 (339)
T 3i1a_A          104 HAPNGF----TQ---NLTGKQ----WKQLGKVLRQIHETS  132 (339)
T ss_dssp             CCCBTT----TS---CCCHHH----HHHHHHHHHHHHTCC
T ss_pred             CCCcCc----cc---CCCHHH----HHHHHHHHHHHhCcC
Confidence            986652    11   233332    346666777777653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	239
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-17
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	6e-09
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	8e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	7e-06
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-04
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	1e-17
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-17
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-16
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-16
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-12
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-08
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-08
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-07
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-05
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-05
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	0.001
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	8e-16
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	3e-15
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	9e-15
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-12
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	6e-09
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-08
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	5e-05
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	0.002
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	1e-14
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	3e-14
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	6e-14
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	7e-14
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-11
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-10
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-05
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-04
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-04
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	7e-04
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	0.003
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	8e-14
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-13
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	6e-09
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-04
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	3e-13
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	3e-13
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	5e-13
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	8e-13
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	6e-12
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-06
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	6e-05
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-04
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	8e-13
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-11
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-08
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	9e-13
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-12
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-09
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-06
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	7e-06
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-04
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	2e-12
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	3e-12
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	3e-12
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	5e-08
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-12
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	7e-11
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-10
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	5e-12
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	7e-12
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	8e-12
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	1e-11
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	4e-11
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	4e-11
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	5e-11
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	5e-11
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	5e-11
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	8e-11
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	1e-10
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	1e-10
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	5e-10
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	8e-10
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	8e-10
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	9e-10
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	9e-10
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	9e-10
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-08
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.002
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	1e-09
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	1e-09
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	1e-09
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-09
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-07
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	9e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	6e-04
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	2e-09
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	3e-09
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	5e-09
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	7e-09
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	3e-05
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	5e-04
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	2e-08
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	2e-08
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	3e-08
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	7e-08
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	9e-08
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	1e-07
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	4e-07
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	5e-07
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	8e-07
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	2e-06
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	2e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.004
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	2e-06
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-06
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	3e-05
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	3e-04
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	3e-06
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	4e-06
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	5e-06
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	1e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	3e-04
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	6e-06
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	8e-06
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	2e-04
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	2e-05
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	2e-05
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	2e-05
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	2e-05
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	4e-05
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	6e-05
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	8e-04
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	0.002
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	0.003
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	0.004

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 77.9 bits (190), Expect = 1e-17
 Identities = 21/57 (36%), Positives = 34/57 (59%)

Query: 7   TDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
            D+ G +P+  A +EG +++V  L+Q+GA V A +  D T   LA A+ H +IV + 
Sbjct: 217 QDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIF 273

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 52.8 bits (125), Expect = 6e-09
 Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 6/71 (8%)

Query: 13 SPLHWACK-EGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDL 71
          SP+    +  G   + E + +    +        T LH  A++   +    L V   ++ 
Sbjct: 2  SPIKLHTEAAGSYAITEPITRESVNIIDPRHNR-TVLHWIASNSSAEKSEDLIVHEAKEC 60

Query: 72 TK----INFKD 78
                +N  D
Sbjct: 61 IAAGADVNAMD 71

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 46.7 bits (109), Expect = 8e-07
 Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 8/61 (13%)

Query: 6  VTDDHGFSPLHWACKEGHLKLVELLL--------QRGARVNATNRGDDTPLHLAAAHGHL 57
          +   H  + LHW       +  E L+          GA VNA +  ++TPL LA      
Sbjct: 28 IDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRR 87

Query: 58 D 58
           
Sbjct: 88 R 88

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 43.6 bits (101), Expect = 7e-06
 Identities = 17/81 (20%), Positives = 38/81 (46%), Gaps = 2/81 (2%)

Query: 1   MYYVSVTDDHGFSPLHWACKEGHLKLVELL-LQRGARVNATNRGDDTPLHLAAAHGHLDI 59
                     G + LH+A +  ++ +V+ L  ++G+  +  +    TP+ LAA  G +++
Sbjct: 177 AARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEV 236

Query: 60  VRLLAVQNNQDLTKINFKDQS 80
           V  L +Q    +  ++  D +
Sbjct: 237 VMYL-IQQGASVEAVDATDHT 256

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 39.3 bits (90), Expect = 2e-04
 Identities = 5/29 (17%), Positives = 10/29 (34%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQ 32
           V   D    +    A    H  +V++  +
Sbjct: 247 VEAVDATDHTARQLAQANNHHNIVDIFDR 275

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.4 bits (190), Expect = 1e-17
 Identities = 34/139 (24%), Positives = 61/139 (43%), Gaps = 7/139 (5%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSH 158
           +++ +L L   I  G  GD   G ++ N +  K +         ++ F  E   +    H
Sbjct: 4   LNMKELKLLQTIGKGEFGDVMLGDYRGNKVAVKCIK----NDATAQAFLAEASVMTQLRH 59

Query: 159 PNVLPVIG-CVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
            N++ ++G  V     L ++++YMA GSL   L      V+     L+F++DV   M +L
Sbjct: 60  SNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYL 119

Query: 218 HSLERIIPQYQLNSRHVMV 236
                      L +R+V+V
Sbjct: 120 EGNN--FVHRDLAARNVLV 136

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.3 bits (189), Expect = 4e-17
 Identities = 22/63 (34%), Positives = 34/63 (53%)

Query: 1   MYYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIV 60
              V+     G+SPLH A ++GH  +V LLL+ GA  N  +    TPL +A   G++ + 
Sbjct: 320 QADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVT 379

Query: 61  RLL 63
            +L
Sbjct: 380 DVL 382

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.8 bits (185), Expect = 1e-16
 Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 1/69 (1%)

Query: 14 PLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTK 73
          PLH A   GHL +V+ LLQRGA  N +N   +TPLH+AA  GH ++ + L +QN   +  
Sbjct: 3  PLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYL-LQNKAKVNA 61

Query: 74 INFKDQSWL 82
              DQ+ L
Sbjct: 62 KAKDDQTPL 70

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.4 bits (184), Expect = 2e-16
 Identities = 26/60 (43%), Positives = 39/60 (65%)

Query: 4  VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           +V++    +PLH A + GH ++ + LLQ  A+VNA  + D TPLH AA  GH ++V+LL
Sbjct: 26 PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLL 85

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.6 bits (156), Expect = 1e-12
 Identities = 28/63 (44%), Positives = 38/63 (60%)

Query: 1   MYYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIV 60
               +     GF+PLH A K G +++ ELLL+R A  NA  +   TPLH+A  H +LDIV
Sbjct: 122 EASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIV 181

Query: 61  RLL 63
           +LL
Sbjct: 182 KLL 184

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (121), Expect = 3e-08
 Identities = 20/60 (33%), Positives = 32/60 (53%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
            +    +G +PLH A    +L +V+LLL RG   ++      TPLH+AA    +++ R L
Sbjct: 158 PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSL 217

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (120), Expect = 5e-08
 Identities = 27/113 (23%), Positives = 45/113 (39%), Gaps = 34/113 (30%)

Query: 1   MYYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPL------------ 48
               ++ +  G +PLH   +EGH+ + ++L++ G  V+AT R   TPL            
Sbjct: 254 QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLV 313

Query: 49  ---------------------HLAAAHGHLDIVRLLAVQNNQDLTKINFKDQS 80
                                H AA  GH DIV LL ++N     +++    +
Sbjct: 314 KFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLL-LKNGASPNEVSSDGTT 365

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 3e-07
 Identities = 24/63 (38%), Positives = 34/63 (53%)

Query: 1   MYYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIV 60
               +     G +PLH A +EGH ++V LLL + A  N  N+   TPLHL A  GH+ + 
Sbjct: 221 GGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVA 280

Query: 61  RLL 63
            +L
Sbjct: 281 DVL 283

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 2e-05
 Identities = 22/58 (37%), Positives = 32/58 (55%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVR 61
                 +G++PLH A K+  +++   LLQ G   NA +    TPLHLAA  GH ++V 
Sbjct: 191 PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVA 248

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 3e-05
 Identities = 21/93 (22%), Positives = 32/93 (34%), Gaps = 33/93 (35%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQR------------------------------ 33
           V+       +PLH A + GH  +V+LLL+                               
Sbjct: 59  VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLAL 118

Query: 34  ---GARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
               A      +   TPLH+AA +G + +  LL
Sbjct: 119 LEKEASQACMTKKGFTPLHVAAKYGKVRVAELL 151

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 0.001
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 46 TPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWL 82
          TPLH+A+  GHL IV+ L +Q        N K ++ L
Sbjct: 2  TPLHVASFMGHLPIVKNL-LQRGASPNVSNVKVETPL 37

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.4 bits (177), Expect = 8e-16
 Identities = 34/140 (24%), Positives = 59/140 (42%), Gaps = 7/140 (5%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFS 157
           +    L L  ++ +G  G+ W G +  +  VA K L            F  E   ++   
Sbjct: 10  VPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSL---KQGSMSPDAFLAEANLMKQLQ 66

Query: 158 HPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
           H  ++ +   V   P + +I++YM  GSL   L   +GI +   + L  A  +A GMAF+
Sbjct: 67  HQRLVRLYAVVTQEP-IYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFI 125

Query: 218 HSLERIIPQYQLNSRHVMVY 237
               R      L + +++V 
Sbjct: 126 EE--RNYIHRDLRAANILVS 143

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.8 bits (173), Expect = 3e-15
 Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 5/138 (3%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSH 158
           I    +++  +I SG  G  ++G+W   D+  K+L V   TP+  + F  E   LR   H
Sbjct: 5   IPDGQITVGQRIGSGSFGTVYKGKW-HGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRH 63

Query: 159 PNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH 218
            N+L  +G   +P  L +++Q+    SLY  LH       +  + +  A   A+GM +LH
Sbjct: 64  VNILLFMGYSTAPQ-LAIVTQWCEGSSLYHHLHIIETK-FEMIKLIDIARQTAQGMDYLH 121

Query: 219 SLERIIPQYQLNSRHVMV 236
              + I    L S ++ +
Sbjct: 122 --AKSIIHRDLKSNNIFL 137

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.6 bits (169), Expect = 9e-15
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLL-QRGARVNATNRGDDTPLHLAAAHGHLDIVRL 62
           V+V  + G +PL  A ++ HL LV+ LL Q    +N T+    T L LA       I  L
Sbjct: 212 VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAEL 271

Query: 63  L 63
           L
Sbjct: 272 L 272

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.7 bits (151), Expect = 3e-12
 Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 13 SPLHWACKEGHLKLVELLLQRGARVNA-TNRGDDTPLHLAAAHGHLDIVRL 62
            L  A +   + LV+ LL+ GA VN     G  TPLH A      DIV L
Sbjct: 7  HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVEL 57

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (126), Expect = 6e-09
 Identities = 21/113 (18%), Positives = 36/113 (31%), Gaps = 38/113 (33%)

Query: 1   MYYVSVTDDHGFSPLHWACKEGHLKLVELLL----------------------------- 31
                     G + L  A ++GH++++++LL                             
Sbjct: 138 KEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSD 197

Query: 32  ---------QRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKIN 75
                      GA VN       TPL LA    HL +V+ L  Q + ++   +
Sbjct: 198 VEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTD 250

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (122), Expect = 2e-08
 Identities = 12/38 (31%), Positives = 20/38 (52%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATN 41
           ++ TD  G + L  A +    K+ ELL +RGA  +  +
Sbjct: 246 INDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 5e-05
 Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 10/84 (11%)

Query: 8   DDHGFSPLHWACKEGHLKLVELLLQRGA----------RVNATNRGDDTPLHLAAAHGHL 57
           D +GF+    A   G +K ++ L +RGA                +G  T L  AA  GH+
Sbjct: 102 DFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV 161

Query: 58  DIVRLLAVQNNQDLTKINFKDQSW 81
           +++++L  +   D+   +   ++ 
Sbjct: 162 EVLKILLDEMGADVNACDNMGRNA 185

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 0.002
 Identities = 35/190 (18%), Positives = 61/190 (32%), Gaps = 12/190 (6%)

Query: 7   TDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQ 66
            ++ G++PLH A +     +VELLL+ GA      +   TP  LAA  G +         
Sbjct: 35  EEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVK-------L 87

Query: 67  NNQDLTKINFKDQSWLGLKTRSRDATLSRHKGISLNDLSLHTKISSGPNGDTWRGRWQKN 126
               L+K    ++      T   +A +                ++        + R +K 
Sbjct: 88  LKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKG 147

Query: 127 DIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSL 186
              A + A       V +   +E       +  N    +G       L+           
Sbjct: 148 GATALMDAAEKGHVEVLKILLDEMG-----ADVNACDNMGRNALIHALLSSDDSDVEAIT 202

Query: 187 YALLHEGAGI 196
           + LL  GA +
Sbjct: 203 HLLLDHGADV 212

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 69.4 bits (169), Expect = 1e-14
 Identities = 32/140 (22%), Positives = 61/140 (43%), Gaps = 7/140 (5%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKND-IVA-KILAVRNCTPRVSRDFNEEFPKLRIF 156
           +   D+++  K+  G  G+ + G W+K    VA K L           +F +E   ++  
Sbjct: 14  MERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTL---KEDTMEVEEFLKEAAVMKEI 70

Query: 157 SHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAF 216
            HPN++ ++G     P   +I+++M +G+L   L E     V     L  A  ++  M +
Sbjct: 71  KHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEY 130

Query: 217 LHSLERIIPQYQLNSRHVMV 236
           L    +      L +R+ +V
Sbjct: 131 LEK--KNFIHRDLAARNCLV 148

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.8 bits (165), Expect = 3e-14
 Identities = 33/139 (23%), Positives = 55/139 (39%), Gaps = 7/139 (5%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFS 157
           I   DL+   ++ +G  G    G+W+    VA K++           +F EE   +   S
Sbjct: 1   IDPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMI---KEGSMSEDEFIEEAKVMMNLS 57

Query: 158 HPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
           H  ++ + G       + +I++YMA G L   L E         Q L    DV   M +L
Sbjct: 58  HEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRH-RFQTQQLLEMCKDVCEAMEYL 116

Query: 218 HSLERIIPQYQLNSRHVMV 236
               +      L +R+ +V
Sbjct: 117 E--SKQFLHRDLAARNCLV 133

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.0 bits (163), Expect = 6e-14
 Identities = 35/139 (25%), Positives = 56/139 (40%), Gaps = 7/139 (5%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFS 157
           I  ++L+   +I SG  G    G W   D VA K +           DF EE   +   S
Sbjct: 2   IDPSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTI---REGAMSEEDFIEEAEVMMKLS 58

Query: 158 HPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
           HP ++ + G       + ++ ++M  G L   L      +      L   +DV  GMA+L
Sbjct: 59  HPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQ-RGLFAAETLLGMCLDVCEGMAYL 117

Query: 218 HSLERIIPQYQLNSRHVMV 236
              E  +    L +R+ +V
Sbjct: 118 E--EACVIHRDLAARNCLV 134

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 67.6 bits (164), Expect = 7e-14
 Identities = 15/76 (19%), Positives = 23/76 (30%), Gaps = 7/76 (9%)

Query: 8   DDHGFSPLHWACKEGH---LKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL- 63
                     A   G    L  + LLL     V      +     LAA +GHL ++  L 
Sbjct: 87  GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLC 146

Query: 64  ---AVQNNQDLTKINF 76
                +    +   N+
Sbjct: 147 ELAPTEIMAMIQAENY 162

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 59.5 bits (143), Expect = 4e-11
 Identities = 11/65 (16%), Positives = 16/65 (24%), Gaps = 5/65 (7%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGA-----RVNATNRGDDTPLHLAAAHGHLD 58
             +   +    L     E  L  +  LL                  +  L LA   G+  
Sbjct: 272 ECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQG 331

Query: 59  IVRLL 63
              LL
Sbjct: 332 ACALL 336

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 58.0 bits (139), Expect = 1e-10
 Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 2/62 (3%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNR--GDDTPLHLAAAHGHLDIVR 61
           V V     +     A + GHL ++  L +             +     LAA +GHL ++ 
Sbjct: 119 VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLN 178

Query: 62  LL 63
            L
Sbjct: 179 RL 180

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 41.4 bits (96), Expect = 4e-05
 Identities = 10/72 (13%), Positives = 16/72 (22%), Gaps = 7/72 (9%)

Query: 8   DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVR-LLAVQ 66
                     +  +G   LV                    L        LD +R LL++ 
Sbjct: 249 LKEMHDAFKLSNPDGVFDLVT------KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIP 302

Query: 67  NNQDLTKINFKD 78
             + L       
Sbjct: 303 GIKALAPTATIP 314

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 39.9 bits (92), Expect = 1e-04
 Identities = 9/59 (15%), Positives = 17/59 (28%), Gaps = 3/59 (5%)

Query: 8   DDHGFSPLHWACKEGHLKLVELLLQRGARVN---ATNRGDDTPLHLAAAHGHLDIVRLL 63
               +     A + GHL ++  L +                     A   GH +++  L
Sbjct: 158 QAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFL 216

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 38.3 bits (88), Expect = 4e-04
 Identities = 8/66 (12%), Positives = 20/66 (30%), Gaps = 7/66 (10%)

Query: 6   VTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAV 65
           +  ++ ++    A   GH  ++  LL     +                +G   +   +A 
Sbjct: 192 IQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA-------YAEIHEFEYGEKYVNPFIAR 244

Query: 66  QNNQDL 71
             N+  
Sbjct: 245 HVNRLK 250

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 37.9 bits (87), Expect = 7e-04
 Identities = 6/29 (20%), Positives = 9/29 (31%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQ 32
            +         L  A + G+     LLL 
Sbjct: 310 TATIPGDANELLRLALRLGNQGACALLLS 338

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 35.6 bits (81), Expect = 0.003
 Identities = 9/80 (11%), Positives = 24/80 (30%), Gaps = 13/80 (16%)

Query: 14  PLHWACKEGHLKLVELLLQRGARVNAT-----------NRGDDTPLHLAAAHGHLDIVRL 62
            +     +   ++ +LL    A  N                 +    +AA  G    +  
Sbjct: 49  HIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDT 108

Query: 63  LA--VQNNQDLTKINFKDQS 80
           L   + +++ +  I  ++  
Sbjct: 109 LCLLLTSDEIVKVIQAENYQ 128

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.1 bits (163), Expect = 8e-14
 Identities = 35/152 (23%), Positives = 65/152 (42%), Gaps = 7/152 (4%)

Query: 89  RDATLSRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAV----RNCTPRVSR 144
            +A     K I ++ + +   I +G  G+   G  +        +A+       T +  R
Sbjct: 13  NEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRR 72

Query: 145 DFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQAL 204
           DF  E   +  F HPNV+ + G V     +++I+++M  GSL + L +  G      Q +
Sbjct: 73  DFLSEASIMGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQNDG-QFTVIQLV 131

Query: 205 RFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
                +A GM +L   +       L +R+++V
Sbjct: 132 GMLRGIAAGMKYLA--DMNYVHRDLAARNILV 161

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.0 bits (159), Expect = 1e-13
 Identities = 21/52 (40%), Positives = 29/52 (55%)

Query: 10  HGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVR 61
            G S LH A   G L LV  L++ GA  +  N  +DTPL +A +   +DI+R
Sbjct: 176 SGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (124), Expect = 6e-09
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 9  DHGFSPLHWACKEGHLKLVELLL----QRGARVNATNRGDDTPLHLAAAHGH 56
          + G +PLH A  +G+L  V  L+    Q G  ++  N    TPLHLA     
Sbjct: 1  EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTL 52

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 2e-04
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 45 DTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKD 78
          DTPLH+A   G+L  V  L     Q   +++  +
Sbjct: 4  DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYN 37

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.6 bits (159), Expect = 3e-13
 Identities = 35/162 (21%), Positives = 62/162 (38%), Gaps = 22/162 (13%)

Query: 94  SRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPK- 152
           + +  +  ND+     I  G  G   + R  K D +    A++      S+D + +F   
Sbjct: 2   TIYPVLDWNDIKFQDVIGEGNFGQVLKARI-KKDGLRMDAAIKRMKEYASKDDHRDFAGE 60

Query: 153 ----LRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLH--------------EGA 194
                ++  HPN++ ++G       L +  +Y   G+L   L                  
Sbjct: 61  LEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANST 120

Query: 195 GIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
              +   Q L FA DVARGM +L   +       L +R+++V
Sbjct: 121 ASTLSSQQLLHFAADVARGMDYLSQKQ--FIHRDLAARNILV 160

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.5 bits (159), Expect = 3e-13
 Identities = 21/127 (16%), Positives = 53/127 (41%), Gaps = 3/127 (2%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKND-IVAKILAVRNCTPRVSRDFNEEFPKLRIFS 157
           +  +D    +++ +G  G  ++   + +  ++A+ L      P +      E   L   +
Sbjct: 3   LKDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECN 62

Query: 158 HPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
            P ++   G   S  ++ +  ++M  GSL  +L +   I        + ++ V +G+ +L
Sbjct: 63  SPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRI--PEQILGKVSIAVIKGLTYL 120

Query: 218 HSLERII 224
               +I+
Sbjct: 121 REKHKIM 127

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.8 bits (157), Expect = 5e-13
 Identities = 32/148 (21%), Positives = 50/148 (33%), Gaps = 23/148 (15%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQK--NDIVAKILAVRNCTPRVSRDFNEEFPK---- 152
              N LS    + +G  G               A  +AV+   P       E        
Sbjct: 20  FPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKV 79

Query: 153 -LRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLH----------------EGAG 195
              + +H N++ ++G        +VI++Y  +G L   L                 E   
Sbjct: 80  LSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDE 139

Query: 196 IVVDFAQALRFAVDVARGMAFLHSLERI 223
           + +D    L F+  VA+GMAFL S   I
Sbjct: 140 LALDLEDLLSFSYQVAKGMAFLASKNCI 167

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.0 bits (154), Expect = 8e-13
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 8  DDHGFSPLHWACKEGHLKLVELLLQRGA---RVNATNRGDDTPLHLAAAHGHL 57
           + G + LH A    H   ++ LL   A    ++  N    T LHLAA  G  
Sbjct: 6  TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEA 58

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.3 bits (147), Expect = 6e-12
 Identities = 20/63 (31%), Positives = 27/63 (42%)

Query: 1   MYYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIV 60
                     G +PLH A +     ++ELLL+ GA   A   G  TPL  A    +  + 
Sbjct: 182 ADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILA 241

Query: 61  RLL 63
           RLL
Sbjct: 242 RLL 244

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.5 bits (106), Expect = 2e-06
 Identities = 9/32 (28%), Positives = 12/32 (37%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGA 35
            +     G +PL  A    +  L  LL   GA
Sbjct: 218 PTARMYGGRTPLGSALLRPNPILARLLRAHGA 249

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.8 bits (94), Expect = 6e-05
 Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 1/34 (2%)

Query: 45 DTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKD 78
          DT LHLA  H H   +  L +  +     ++ ++
Sbjct: 10 DTALHLAVIHQHEPFLDFL-LGFSAGHEYLDLQN 42

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.3 bits (90), Expect = 2e-04
 Identities = 21/61 (34%), Positives = 26/61 (42%)

Query: 3  YVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRL 62
          Y+ + +D G + LH A   G    VE L   GA V    RG  T LHLA          +
Sbjct: 37 YLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACV 96

Query: 63 L 63
          L
Sbjct: 97 L 97

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.3 bits (155), Expect = 8e-13
 Identities = 13/49 (26%), Positives = 25/49 (51%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAA 52
           ++  D +G + L+ A + G++ +V+ LL  GA     N+    P+   A
Sbjct: 252 LNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.1 bits (144), Expect = 2e-11
 Identities = 15/74 (20%), Positives = 30/74 (40%)

Query: 8   DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQN 67
           D+HG +PLHW     +L+LV+ L++ G+     +   ++ L  A    +           
Sbjct: 104 DEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALL 163

Query: 68  NQDLTKINFKDQSW 81
           +     +  +D   
Sbjct: 164 DYLYPCLILEDSMN 177

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.6 bits (122), Expect = 2e-08
 Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 4/75 (5%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQR---GARVNATNRGDDTPLHLAAAHGHLDIV 60
           +    +   S  +    E    ++E L  +      +NA +   DT L++AA  G++ IV
Sbjct: 216 IQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIV 275

Query: 61  RLLAVQNNQDLTKIN 75
             L +    D    N
Sbjct: 276 DAL-LDYGADPFIAN 289

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.4 bits (156), Expect = 9e-13
 Identities = 29/149 (19%), Positives = 47/149 (31%), Gaps = 28/149 (18%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKND--IVAKILAVRNCTPRVSRDFNEEFPK---- 152
               +L     + SG  G              V+  +AV+    +      E        
Sbjct: 34  FPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKM 93

Query: 153 -LRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLH-------------------- 191
             ++ SH N++ ++G       + +I +Y  +G L   L                     
Sbjct: 94  MTQLGSHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLE 153

Query: 192 -EGAGIVVDFAQALRFAVDVARGMAFLHS 219
            E    V+ F   L FA  VA+GM FL  
Sbjct: 154 EEEDLNVLTFEDLLCFAYQVAKGMEFLEF 182

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.1 bits (152), Expect = 1e-12
 Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 1   MYYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIV 60
               ++ D  G +PLH AC E  ++  +LL+ +GA +   N+ + TPL +A   G   I+
Sbjct: 159 KASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA-KGGLGLIL 217

Query: 61  RLL 63
           + +
Sbjct: 218 KRM 220

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (126), Expect = 3e-09
 Identities = 19/61 (31%), Positives = 37/61 (60%)

Query: 3   YVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRL 62
            V+  + +G +PLH+A  +   ++  +LL+ GA  +A +  + T +H AAA G+L ++ +
Sbjct: 95  QVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHI 154

Query: 63  L 63
           L
Sbjct: 155 L 155

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 5e-06
 Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 33/93 (35%)

Query: 4   VSVTDDHGFSPLHWACKEGHLK---------------------------------LVELL 30
            + TD    + LHWAC  GH +                                 +V+ L
Sbjct: 30  ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKAL 89

Query: 31  LQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           L +GA+VNA N+   TPLH AA+    +I  +L
Sbjct: 90  LGKGAQVNAVNQNGCTPLHYAASKNRHEIAVML 122

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 7e-06
 Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 15 LHWACKEGHLK-LVELLLQRGARVNATNRGDDTPLHLAAAHGH 56
          +      G L+ L E +L   +    T++   T LH A + GH
Sbjct: 7  VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGH 49

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 2e-04
 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
               D +  + +H A  +G+LK++ +LL   A  N  +   +TPLHLA     ++  +LL
Sbjct: 129 PDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLL 188

Query: 64  AVQNNQDLTKINFKDQS 80
            V     +   N ++++
Sbjct: 189 -VSQGASIYIENKEEKT 204

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.2 bits (153), Expect = 2e-12
 Identities = 35/139 (25%), Positives = 57/139 (41%), Gaps = 7/139 (5%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFS 157
           I    L L  K+  G  G+ W G W     VA K L     +P     F +E   ++   
Sbjct: 14  IPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPE---AFLQEAQVMKKLR 70

Query: 158 HPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
           H  ++ +   V+  P  +V  +YM+ GSL   L    G  +   Q +  A  +A GMA++
Sbjct: 71  HEKLVQLYAVVSEEPIYIVT-EYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYV 129

Query: 218 HSLERIIPQYQLNSRHVMV 236
                      L + +++V
Sbjct: 130 E--RMNYVHRDLRAANILV 146

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.7 bits (152), Expect = 3e-12
 Identities = 17/111 (15%), Positives = 46/111 (41%), Gaps = 1/111 (0%)

Query: 109 KISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCV 168
           ++  G  G  ++ + ++  ++A    +   +     D+  E   L    HPN++ ++   
Sbjct: 19  ELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAF 78

Query: 169 NSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS 219
               +L ++ ++ A G++ A++ E     +  +Q           + +LH 
Sbjct: 79  YYENNLWILIEFCAGGAVDAVMLELER-PLTESQIQVVCKQTLDALNYLHD 128

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 61.7 bits (148), Expect = 3e-12
 Identities = 21/63 (33%), Positives = 28/63 (44%)

Query: 1   MYYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIV 60
                  DD   +PL  A +EG  +  + LL   A    T+  D  P  +A+   H DIV
Sbjct: 146 HANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIV 205

Query: 61  RLL 63
           RLL
Sbjct: 206 RLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 49.4 bits (116), Expect = 5e-08
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 25 KLVELLLQRGARVNAT-NRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSW 81
          +++  LL +GA +NAT ++  +T LHLAA     D  + L        ++ N      
Sbjct: 3  QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPL 60

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 62.4 bits (150), Expect = 3e-12
 Identities = 16/64 (25%), Positives = 28/64 (43%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
           V++ D  G++PLH A   G  +   +L++    + A N+   T   +A       +  L 
Sbjct: 225 VNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQ 284

Query: 64  AVQN 67
             QN
Sbjct: 285 KKQN 288

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 58.6 bits (140), Expect = 7e-11
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 1/80 (1%)

Query: 1   MYYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIV 60
                     G + LH A  +G+ ++++LL+Q    VN  +    TPLH AA  G  +  
Sbjct: 189 HINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEAC 248

Query: 61  RLLAVQNNQDLTKINFKDQS 80
           R+L V+N  D+  +N   Q+
Sbjct: 249 RIL-VENLCDMEAVNKVGQT 267

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 57.0 bits (136), Expect = 2e-10
 Identities = 19/75 (25%), Positives = 27/75 (36%)

Query: 7   TDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQ 66
                 +    AC  G  + V  LL+RGA +N  N    T LH A    ++D+V+ L   
Sbjct: 36  VKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVEN 95

Query: 67  NNQDLTKINFKDQSW 81
                   N      
Sbjct: 96  GANINQPDNEGWIPL 110

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (149), Expect = 5e-12
 Identities = 35/145 (24%), Positives = 59/145 (40%), Gaps = 16/145 (11%)

Query: 102 NDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNV 161
             + L   I  G  G+ WRG+W+  ++  KI + R      S     E  +  +  H N+
Sbjct: 3   RTIVLQESIGKGRFGEVWRGKWRGEEVAVKIFSSRE---ERSWFREAEIYQTVMLRHENI 59

Query: 162 LPVIGCV----NSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
           L  I        +   L ++S Y   GSL+  L+      V     ++ A+  A G+A L
Sbjct: 60  LGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNRYT---VTVEGMIKLALSTASGLAHL 116

Query: 218 HS------LERIIPQYQLNSRHVMV 236
           H        +  I    L S++++V
Sbjct: 117 HMEIVGTQGKPAIAHRDLKSKNILV 141

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.3 bits (148), Expect = 7e-12
 Identities = 38/144 (26%), Positives = 59/144 (40%), Gaps = 10/144 (6%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAV------RNCTPRVSRDFNEEFPK 152
           I   DL L  K+  G  G   RG W         +AV          P    DF  E   
Sbjct: 5   IGEKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNA 64

Query: 153 LRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVAR 212
           +    H N++ + G V +PP + ++++    GSL   L +  G         R+AV VA 
Sbjct: 65  MHSLDHRNLIRLYGVVLTPP-MKMVTELAPLGSLLDRLRKHQG-HFLLGTLSRYAVQVAE 122

Query: 213 GMAFLHSLERIIPQYQLNSRHVMV 236
           GM +L S  +      L +R++++
Sbjct: 123 GMGYLES--KRFIHRDLAARNLLL 144

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.1 bits (148), Expect = 8e-12
 Identities = 23/124 (18%), Positives = 51/124 (41%), Gaps = 5/124 (4%)

Query: 100 SLNDLSLHTKISSGPNGDTWRGRWQKND-IVA--KILAVRNCTPRVSRDFNEEFPKLRIF 156
           +L D  +   +  G  G+ +  R +++  I+A   +   +     V      E       
Sbjct: 4   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 63

Query: 157 SHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAF 216
            HPN+L + G  +    + +I +Y   G++Y  L + +    D  +   +  ++A  +++
Sbjct: 64  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKF--DEQRTATYITELANALSY 121

Query: 217 LHSL 220
            HS 
Sbjct: 122 CHSK 125

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 61.2 bits (148), Expect = 1e-11
 Identities = 17/124 (13%), Positives = 43/124 (34%), Gaps = 1/124 (0%)

Query: 97  KGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIF 156
           +G   +   +  ++ SG  G   R   +    V     +    P        E   +   
Sbjct: 24  QGSVYDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQL 83

Query: 157 SHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAF 216
            HP ++ +        ++V+I ++++ G L+  +       +  A+ + +      G+  
Sbjct: 84  HHPKLINLHDAFEDKYEMVLILEFLSGGELFDRIAAE-DYKMSEAEVINYMRQACEGLKH 142

Query: 217 LHSL 220
           +H  
Sbjct: 143 MHEH 146

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.2 bits (143), Expect = 4e-11
 Identities = 30/147 (20%), Positives = 55/147 (37%), Gaps = 10/147 (6%)

Query: 98  GISLND--LSLHTKISSGPNGDTWRGRWQKND-IVA-KILAVRNCTPRVSRDFNEEFPKL 153
           G+S +   L    +I  G     ++G   +    VA   L  R  T    + F EE   L
Sbjct: 3   GMSNDGRFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEML 62

Query: 154 RIFSHPNVLPVIGCVNSPPD----LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVD 209
           +   HPN++       S       +V++++ M  G+L   L     +         +   
Sbjct: 63  KGLQHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKRFKVM--KIKVLRSWCRQ 120

Query: 210 VARGMAFLHSLERIIPQYQLNSRHVMV 236
           + +G+ FLH+    I    L   ++ +
Sbjct: 121 ILKGLQFLHTRTPPIIHRDLKCDNIFI 147

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.0 bits (142), Expect = 4e-11
 Identities = 31/142 (21%), Positives = 63/142 (44%), Gaps = 8/142 (5%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPK----LR 154
           I    + L   I  G  GD  +G +   +  A  +A++ C    S    E+F +    +R
Sbjct: 4   IQRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMR 63

Query: 155 IFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGM 214
            F HP+++ +IG + +   + +I +    G L + L       +D A  + +A  ++  +
Sbjct: 64  QFDHPHIVKLIGVI-TENPVWIIMELCTLGELRSFLQVRKY-SLDLASLILYAYQLSTAL 121

Query: 215 AFLHSLERIIPQYQLNSRHVMV 236
           A+L    +      + +R+V+V
Sbjct: 122 AYLE--SKRFVHRDIAARNVLV 141

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.9 bits (142), Expect = 5e-11
 Identities = 23/125 (18%), Positives = 47/125 (37%), Gaps = 5/125 (4%)

Query: 101 LNDLSLHTKISSGPNGDTWRGRWQKND-IVA-KILAVRNCTPRVSRDFNEEFPKLRIFSH 158
           + D  L   +  G  G+      +  +  VA KI+ ++        +  +E    ++ +H
Sbjct: 4   VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKR-AVDCPENIKKEICINKMLNH 62

Query: 159 PNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH 218
            NV+   G         +  +Y + G L+  +    G+      A RF   +  G+ +LH
Sbjct: 63  ENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGM--PEPDAQRFFHQLMAGVVYLH 120

Query: 219 SLERI 223
            +   
Sbjct: 121 GIGIT 125

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 59.3 bits (143), Expect = 5e-11
 Identities = 19/121 (15%), Positives = 51/121 (42%), Gaps = 5/121 (4%)

Query: 101 LNDLSLHTKISSGPNGDTWRGRWQKND-IVA-KILAVRNCTPRVSRDFNEEFPKLRIFSH 158
           L+   +H ++ +G  G   R   +      A K +   + + +      +E   + +  H
Sbjct: 25  LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDK--ETVRKEIQTMSVLRH 82

Query: 159 PNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH 218
           P ++ +        ++V+I ++M+ G L+  + +     +   +A+ +   V +G+  +H
Sbjct: 83  PTLVNLHDAFEDDNEMVMIYEFMSGGELFEKVADEHN-KMSEDEAVEYMRQVCKGLCHMH 141

Query: 219 S 219
            
Sbjct: 142 E 142

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.9 bits (142), Expect = 5e-11
 Identities = 20/117 (17%), Positives = 43/117 (36%), Gaps = 6/117 (5%)

Query: 109 KISSGPNGDTWRGRWQKND-IVA-KILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIG 166
            +  G  G   R     +      K + V+           +E   L I  H N+L +  
Sbjct: 12  DLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQV---LVKKEISILNIARHRNILHLHE 68

Query: 167 CVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERI 223
              S  +LV+I ++++   ++  ++      ++  + + +   V   + FLHS    
Sbjct: 69  SFESMEELVMIFEFISGLDIFERINTS-AFELNEREIVSYVHQVCEALQFLHSHNIG 124

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 58.6 bits (141), Expect = 8e-11
 Identities = 24/144 (16%), Positives = 52/144 (36%), Gaps = 10/144 (6%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKND-IVA-KILAVRNCTPRVSRDFNEEFPK---- 152
           +++ND S+H  I  G  G+ +  R      + A K L  +    +               
Sbjct: 1   LTMNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSL 60

Query: 153 LRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVAR 212
           +     P ++ +    ++P  L  I   M  G L+  L +             +A ++  
Sbjct: 61  VSTGDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQHGVFSEA--DMRFYAAEIIL 118

Query: 213 GMAFLHSLERIIPQYQLNSRHVMV 236
           G+  +H+  R +    L   ++++
Sbjct: 119 GLEHMHN--RFVVYRDLKPANILL 140

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 58.1 bits (140), Expect = 1e-10
 Identities = 23/131 (17%), Positives = 50/131 (38%), Gaps = 7/131 (5%)

Query: 109 KISSGPNGDTWRGRWQKND-IVA-KILAVRNC-TPRVSRDFNEEFPKLRIFSHPNVLPVI 165
           +I  G  G  +  R  +N  +VA K ++     +    +D  +E   L+   HPN +   
Sbjct: 22  EIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYR 81

Query: 166 GCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIP 225
           GC        ++ +Y    +   L      +     +         +G+A+LHS    + 
Sbjct: 82  GCYLREHTAWLVMEYCLGSASDLLEVHKKPL--QEVEIAAVTHGALQGLAYLHS--HNMI 137

Query: 226 QYQLNSRHVMV 236
              + + ++++
Sbjct: 138 HRDVKAGNILL 148

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.8 bits (139), Expect = 1e-10
 Identities = 26/132 (19%), Positives = 51/132 (38%), Gaps = 9/132 (6%)

Query: 109 KISSGPNGDTWRGRWQKND---IVA-KILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPV 164
           ++ SG  G   +G +Q       VA KIL      P +  +   E   ++   +P ++ +
Sbjct: 14  ELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRM 73

Query: 165 IGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERII 224
           IG        +++ +    G L   L +   +       +     V+ GM +L   E   
Sbjct: 74  IGICE-AESWMLVMEMAELGPLNKYLQQNRHV--KDKNIIELVHQVSMGMKYLE--ESNF 128

Query: 225 PQYQLNSRHVMV 236
               L +R+V++
Sbjct: 129 VHRDLAARNVLL 140

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.2 bits (135), Expect = 5e-10
 Identities = 24/113 (21%), Positives = 46/113 (40%), Gaps = 7/113 (6%)

Query: 109 KISSGPNGDTWRGRWQKND-IVA-KILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIG 166
           KI  G +G  +          VA + + ++    +       E   +R   +PN++  + 
Sbjct: 27  KIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKK--ELIINEILVMRENKNPNIVNYLD 84

Query: 167 CVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS 219
                 +L V+ +Y+A GSL  ++ E     +D  Q      +  + + FLHS
Sbjct: 85  SYLVGDELWVVMEYLAGGSLTDVVTETC---MDEGQIAAVCRECLQALEFLHS 134

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 55.6 bits (133), Expect = 8e-10
 Identities = 34/167 (20%), Positives = 62/167 (37%), Gaps = 32/167 (19%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRW------QKNDIVA-KILAVRNCTPRVSRDFNEEFP 151
              N++     I  G  G  ++ R       +   +VA K+L     +  +  DF  E  
Sbjct: 10  YPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLK-EEASADMQADFQREAA 68

Query: 152 KLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHE------------------- 192
            +  F +PN++ ++G       + ++ +YMA+G L   L                     
Sbjct: 69  LMAEFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRAR 128

Query: 193 ---GAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
                   +  A+ L  A  VA GMA+L   + +     L +R+ +V
Sbjct: 129 VSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFV--HRDLATRNCLV 173

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (133), Expect = 8e-10
 Identities = 28/152 (18%), Positives = 62/152 (40%), Gaps = 16/152 (10%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQK--NDIVAKILAVRNCTPRVSRDFNEEFPK---- 152
           ++   +++  ++  G  G  + G  +    D     +A++      S     EF      
Sbjct: 17  VAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASV 76

Query: 153 LRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLH--------EGAGIVVDFAQAL 204
           ++ F+  +V+ ++G V+     +VI + M  G L + L                  ++ +
Sbjct: 77  MKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMI 136

Query: 205 RFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
           + A ++A GMA+L++         L +R+ MV
Sbjct: 137 QMAGEIADGMAYLNA--NKFVHRDLAARNCMV 166

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.5 bits (133), Expect = 9e-10
 Identities = 18/124 (14%), Positives = 46/124 (37%), Gaps = 6/124 (4%)

Query: 99  ISLNDLSLH-TKISSGPNGDTWRGRWQKND---IVAKILAVRNCTPRVSRDFNEEFPKLR 154
           +  ++L +   ++  G  G   +G ++       VA  +  +      + +   E   + 
Sbjct: 5   LKRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMH 64

Query: 155 IFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGM 214
              +P ++ +IG   +   L+++ +    G L+  L       +  +        V+ GM
Sbjct: 65  QLDNPYIVRLIGVCQAEA-LMLVMEMAGGGPLHKFLVGKRE-EIPVSNVAELLHQVSMGM 122

Query: 215 AFLH 218
            +L 
Sbjct: 123 KYLE 126

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.5 bits (133), Expect = 9e-10
 Identities = 25/123 (20%), Positives = 47/123 (38%), Gaps = 6/123 (4%)

Query: 101 LNDLSLHTKISSGPNGDTWRGRWQKND-IVA-KILAVRNCTPR--VSRDFNEEFPKLRIF 156
           + D  LH  +  G  G  +   ++K +   A K L          V     E+      +
Sbjct: 1   IEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAW 60

Query: 157 SHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAF 216
            HP +  +     +  +L  + +Y+  G L   +        D ++A  +A ++  G+ F
Sbjct: 61  EHPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQSCHKF--DLSRATFYAAEIILGLQF 118

Query: 217 LHS 219
           LHS
Sbjct: 119 LHS 121

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.8 bits (130), Expect = 9e-10
 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 14 PLHWACKEGHLKLVELLL-QRGARVNATNRGDDTPLHLAAAHGHL 57
          PLH AC E     V+ LL  + + +   ++    PLH + +    
Sbjct: 3  PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAH 47

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.4 bits (116), Expect = 6e-08
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 4/64 (6%)

Query: 1   MYYVSVTDDHGFSPLHWACKEGHLKLVELLLQR-GARVNATNRGDDTPLHLAAAHGHLDI 59
              V+  D  G++PL  A  EGH     LL+++ GA  +  +        +A    +  +
Sbjct: 162 KSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQV 218

Query: 60  VRLL 63
            +  
Sbjct: 219 KKFF 222

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.0 bits (81), Expect = 0.002
 Identities = 8/38 (21%), Positives = 13/38 (34%)

Query: 45 DTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWL 82
          + PLH A        V+ L       L + +   +  L
Sbjct: 1  NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPL 38

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (132), Expect = 1e-09
 Identities = 24/124 (19%), Positives = 46/124 (37%), Gaps = 6/124 (4%)

Query: 103 DLSLHTKISSGPNGDTWRGRWQKND-IVA-KILAVRNCTPRVSRDFNEEFPKLRIFSHPN 160
           D  +   I +G  G   + R + +  I+  K L   + T    +    E   LR   HPN
Sbjct: 5   DYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPN 64

Query: 161 VLPVIGCVNSPPD--LVVISQYMAWGSLYALLHEG--AGIVVDFAQALRFAVDVARGMAF 216
           ++     +    +  L ++ +Y   G L +++ +G      +D    LR    +   +  
Sbjct: 65  IVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKE 124

Query: 217 LHSL 220
            H  
Sbjct: 125 CHRR 128

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.3 bits (132), Expect = 1e-09
 Identities = 31/148 (20%), Positives = 48/148 (32%), Gaps = 23/148 (15%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKND--------IVA-KILAVRNCTPRVSRDFNEE 149
           +  + L L   +  G  G          D         VA K+L        +S   +E 
Sbjct: 10  LPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEM 69

Query: 150 FPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLH--------------EGAG 195
                I  H N++ ++G       L VI +Y + G+L   L                   
Sbjct: 70  EMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPE 129

Query: 196 IVVDFAQALRFAVDVARGMAFLHSLERI 223
             +     +  A  VARGM +L S + I
Sbjct: 130 EQLSSKDLVSCAYQVARGMEYLASKKCI 157

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 54.9 bits (131), Expect = 1e-09
 Identities = 19/120 (15%), Positives = 45/120 (37%), Gaps = 3/120 (2%)

Query: 101 LNDLSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFSHP 159
           +       KI  G  G  ++ +    +  A K + +      +      E   L+   H 
Sbjct: 1   MEKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHS 60

Query: 160 NVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS 219
           N++ +   +++   LV++ +++       L     G+  +   A  F + +  G+A+ H 
Sbjct: 61  NIVKLYDVIHTKKRLVLVFEHLDQDLKKLLDVCEGGL--ESVTAKSFLLQLLNGIAYCHD 118

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.1 bits (128), Expect = 2e-09
 Identities = 18/71 (25%), Positives = 28/71 (39%)

Query: 10  HGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQ 69
           +G + LH A    +  LV LLL+ GA VN       +P  L        I + L     +
Sbjct: 144 NGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE 203

Query: 70  DLTKINFKDQS 80
           +L  +   +  
Sbjct: 204 NLQMLPESEDE 214

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (113), Expect = 1e-07
 Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 4/50 (8%)

Query: 11 GFSPLHWACKEGH----LKLVELLLQRGARVNATNRGDDTPLHLAAAHGH 56
          G S LH A         ++++  +    A +N  N    TPLHLA     
Sbjct: 2  GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQ 51

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 9e-05
 Identities = 5/31 (16%), Positives = 10/31 (32%)

Query: 5   SVTDDHGFSPLHWACKEGHLKLVELLLQRGA 35
           +     G+SP          ++ + L Q   
Sbjct: 172 NRVTYQGYSPYQLTWGRPSTRIQQQLGQLTL 202

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 6e-04
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 45 DTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKD 78
          D+ LHLA  H    +   +  Q   DL  +NF++
Sbjct: 3  DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQN 36

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.3 bits (130), Expect = 2e-09
 Identities = 23/120 (19%), Positives = 43/120 (35%), Gaps = 5/120 (4%)

Query: 106 LHTKISSGPNGDTWRGRWQKND-IVA-KILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLP 163
               + +G   +      ++   +VA K +A +    +       E   L    HPN++ 
Sbjct: 13  FRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGS-MENEIAVLHKIKHPNIVA 71

Query: 164 VIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERI 223
           +     S   L +I Q ++ G L+  + E          A R    V   + +LH L  +
Sbjct: 72  LDDIYESGGHLYLIMQLVSGGELFDRIVEKGFY--TERDASRLIFQVLDAVKYLHDLGIV 129

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (128), Expect = 3e-09
 Identities = 32/160 (20%), Positives = 56/160 (35%), Gaps = 24/160 (15%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKND------IVA-KILAVRNCTPRVSRDFNEEFP 151
              + L L   +  G  G          D       VA K+L             +E   
Sbjct: 10  FPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKI 69

Query: 152 KLRIFSHPNVLPVIGCVNSPPD-LVVISQYMAWGSLYALLH--------------EGAGI 196
            + I  H NV+ ++G    P   L+VI ++  +G+L   L               +    
Sbjct: 70  LIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKD 129

Query: 197 VVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
            +     + ++  VA+GM FL S  R      L +R++++
Sbjct: 130 FLTLEHLICYSFQVAKGMEFLAS--RKCIHRDLAARNILL 167

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (127), Expect = 5e-09
 Identities = 40/149 (26%), Positives = 59/149 (39%), Gaps = 10/149 (6%)

Query: 95  RHKGISLNDLSLH--TKISSGPNGDTWRGRWQKNDIVAKILAV----RNCTPRVSRDFNE 148
           +H  I  + L +H    I  G  G  + G    ND      AV    R         F  
Sbjct: 18  QHVVIGPSSLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLT 77

Query: 149 EFPKLRIFSHPNVLPVIG-CVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFA 207
           E   ++ FSHPNVL ++G C+ S    +V+  YM  G L   +             + F 
Sbjct: 78  EGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHN-PTVKDLIGFG 136

Query: 208 VDVARGMAFLHSLERIIPQYQLNSRHVMV 236
           + VA+GM FL    +      L +R+ M+
Sbjct: 137 LQVAKGMKFLA--SKKFVHRDLAARNCML 163

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.0 bits (120), Expect = 7e-09
 Identities = 16/54 (29%), Positives = 31/54 (57%)

Query: 10  HGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
              + LHWA +  H ++VELL++ GA V+  ++   T   ++  +G+ D+  +L
Sbjct: 99  LKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.6 bits (93), Expect = 3e-05
 Identities = 8/30 (26%), Positives = 11/30 (36%)

Query: 14 PLHWACKEGHLKLVELLLQRGARVNATNRG 43
           L  A + G    V +L+  GA       G
Sbjct: 5  KLLEAARAGQDDEVRILMANGAPFTTDWLG 34

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.1 bits (84), Expect = 5e-04
 Identities = 5/30 (16%), Positives = 9/30 (30%)

Query: 1   MYYVSVTDDHGFSPLHWACKEGHLKLVELL 30
              V        +    +   G+  L E+L
Sbjct: 123 GADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (123), Expect = 2e-08
 Identities = 16/120 (13%), Positives = 42/120 (35%), Gaps = 12/120 (10%)

Query: 110 ISSGPNGDTWRGRWQKND-IVA-KILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGC 167
           +  G NG   +   ++     A K+L          +   E     R    P+++ ++  
Sbjct: 20  LGLGINGKVLQIFNKRTQEKFALKML------QDCPKARREVELHWRASQCPHIVRIVDV 73

Query: 168 VNSPPD----LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERI 223
             +       L+++ + +  G L++ + +         +A      +   + +LHS+   
Sbjct: 74  YENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIA 133

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.2 bits (122), Expect = 2e-08
 Identities = 19/124 (15%), Positives = 31/124 (25%), Gaps = 5/124 (4%)

Query: 103 DLSLHTKISSGPNGDTWRGRWQKND-IVA-KILAVRNCT-PRVSRDFNEEFPKLRIFSHP 159
           D      +  G        R        A KIL  R+            E   +    HP
Sbjct: 9   DFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHP 68

Query: 160 NVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS 219
             + +         L     Y   G L   + +      D      +  ++   + +LH 
Sbjct: 69  FFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSF--DETCTRFYTAEIVSALEYLHG 126

Query: 220 LERI 223
              I
Sbjct: 127 KGII 130

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (120), Expect = 3e-08
 Identities = 23/121 (19%), Positives = 51/121 (42%), Gaps = 3/121 (2%)

Query: 101 LNDLSLHTKISSGPNGDTWRGRWQKND-IVA-KILAVRNCTPRVSRDFNEEFPKLRIFSH 158
           + +     KI  G  G  ++ R +    +VA K + +   T  V      E   L+  +H
Sbjct: 1   MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 60

Query: 159 PNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH 218
           PN++ ++  +++   L ++ +++    L   +   A   +       +   + +G+AF H
Sbjct: 61  PNIVKLLDVIHTENKLYLVFEFLHQD-LKKFMDASALTGIPLPLIKSYLFQLLQGLAFCH 119

Query: 219 S 219
           S
Sbjct: 120 S 120

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 49.7 bits (118), Expect = 7e-08
 Identities = 22/130 (16%), Positives = 43/130 (33%), Gaps = 9/130 (6%)

Query: 102 NDLSLHTKISSGPNGDTWRGRWQKND-IVA-KILAVRNCT-PRVSRDFNEEFPKLRIFSH 158
           +   L   +  G   +    R  +    VA K+L       P     F  E       +H
Sbjct: 7   DRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNH 66

Query: 159 PNVLPVIGCV----NSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGM 214
           P ++ V         + P   ++ +Y+   +L  ++H    +     +A+    D  + +
Sbjct: 67  PAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPM--TPKRAIEVIADACQAL 124

Query: 215 AFLHSLERII 224
            F H    I 
Sbjct: 125 NFSHQNGIIH 134

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.7 bits (118), Expect = 9e-08
 Identities = 31/128 (24%), Positives = 52/128 (40%), Gaps = 6/128 (4%)

Query: 100 SLNDLSLHTKISSGPNGDTWRGRWQKND-IVA-KILAVRNCT-PRVSRDFNEEFPKLRIF 156
           SL D  +   + +G  G     R + N    A K+L        +     N+E   L I 
Sbjct: 2   SLQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIV 61

Query: 157 SHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAF 216
           +HP ++ + G       + +I  Y+  G L++LL +          A  +A +V   + +
Sbjct: 62  THPFIIRMWGTFQDAQQIFMIMDYIEGGELFSLLRKSQRF--PNPVAKFYAAEVCLALEY 119

Query: 217 LHSLERII 224
           LHS   II
Sbjct: 120 LHSK-DII 126

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (115), Expect = 1e-07
 Identities = 34/144 (23%), Positives = 65/144 (45%), Gaps = 10/144 (6%)

Query: 99  ISLNDLSLHTKISSGPNGDTWRGRWQKND-----IVA-KILAVRNCTPRVSRDFNEEFPK 152
           I  + ++    I +G  G+ ++G  + +       VA K L     T +   DF  E   
Sbjct: 4   IHPSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLK-AGYTEKQRVDFLGEAGI 62

Query: 153 LRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVAR 212
           +  FSH N++ + G ++    +++I++YM  G+L   L E  G      Q +     +A 
Sbjct: 63  MGQFSHHNIIRLEGVISKYKPMMIITEYMENGALDKFLREKDGE-FSVLQLVGMLRGIAA 121

Query: 213 GMAFLHSLERIIPQYQLNSRHVMV 236
           GM +L ++        L +R+++V
Sbjct: 122 GMKYLANMN--YVHRDLAARNILV 143

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 47.4 bits (112), Expect = 4e-07
 Identities = 18/128 (14%), Positives = 39/128 (30%), Gaps = 12/128 (9%)

Query: 103 DLSLHTKISSGPNGDTWRGRWQKND-IVA-KILAVRNCTPRVSRDFNEEFPKL------- 153
           +      +  G +    R   +      A KI+ V       + +  E            
Sbjct: 4   NYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDIL 63

Query: 154 -RIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVAR 212
            ++  HPN++ +     +     ++   M  G L+  L E   +     +  +    +  
Sbjct: 64  RKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEKVTL--SEKETRKIMRALLE 121

Query: 213 GMAFLHSL 220
            +  LH L
Sbjct: 122 VICALHKL 129

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (112), Expect = 5e-07
 Identities = 28/134 (20%), Positives = 54/134 (40%), Gaps = 10/134 (7%)

Query: 109 KISSGPNGDTWRGRWQKND-IVA-KILAVRNCTPRVSRDFNEEFPK----LRIFSHPNVL 162
           ++ SG      + R +      A K +  R           E+  +    L+   HPNV+
Sbjct: 17  ELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVI 76

Query: 163 PVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLER 222
            +     +  D+++I + +A G L+  L E   +  +   A  F   +  G+ +LHS   
Sbjct: 77  TLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEE--ATEFLKQILNGVYYLHS--L 132

Query: 223 IIPQYQLNSRHVMV 236
            I  + L   ++M+
Sbjct: 133 QIAHFDLKPENIML 146

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (110), Expect = 8e-07
 Identities = 20/133 (15%), Positives = 51/133 (38%), Gaps = 9/133 (6%)

Query: 109 KISSGPNGDTWRGRWQK-NDIVA-KILAVRNCT---PRVSRDFNEEFPKLRIFSHPNVLP 163
            +  G     ++ R +  N IVA K + + + +     ++R    E   L+  SHPN++ 
Sbjct: 5   FLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIG 64

Query: 164 VIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERI 223
           ++       ++ ++  +M       +      +         + +   +G+ +LH     
Sbjct: 65  LLDAFGHKSNISLVFDFMETDLEVIIKDNSLVLTPS--HIKAYMLMTLQGLEYLHQ--HW 120

Query: 224 IPQYQLNSRHVMV 236
           I    L   ++++
Sbjct: 121 ILHRDLKPNNLLL 133

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (103), Expect = 2e-06
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 2   YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVR 61
             V+V D  G  P+H A +EGH  +V  L    + ++  +    TPL LA   G  D+V 
Sbjct: 92  ADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVD 150

Query: 62  LL 63
           +L
Sbjct: 151 IL 152

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 2e-04
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 4   VSVTDDHGFSPLHWACKEGHLKLVELLLQ 32
           +   D  G +PL  A + G   LV++L  
Sbjct: 126 LHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (78), Expect = 0.004
 Identities = 12/40 (30%), Positives = 15/40 (37%), Gaps = 1/40 (2%)

Query: 11 GFSPLHWACKEGHLKLVELLLQR-GARVNATNRGDDTPLH 49
              L  A   G ++ V  LL R     +A NR   T L 
Sbjct: 2  AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQ 41

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (107), Expect = 2e-06
 Identities = 21/120 (17%), Positives = 43/120 (35%), Gaps = 15/120 (12%)

Query: 109 KISSGPNGDTWRGRWQK-NDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIG 166
            I +G  G  ++ +     ++VA K +       +  R  N E   +R   H N++ +  
Sbjct: 27  VIGNGSFGVVYQAKLCDSGELVAIKKV------LQDKRFKNRELQIMRKLDHCNIVRLRY 80

Query: 167 CVNSPPD------LVVISQYMAWGSLYALLHEG-AGIVVDFAQALRFAVDVARGMAFLHS 219
              S  +      L ++  Y+         H   A   +       +   + R +A++HS
Sbjct: 81  FFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHS 140

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.8 bits (102), Expect = 2e-06
 Identities = 15/96 (15%), Positives = 26/96 (27%), Gaps = 36/96 (37%)

Query: 4   VSVTDDHGFSPLHWACK---EGHLKLVELLLQRGARV----------------------- 37
           ++   +   + LH A +      L +V+ L+Q    +                       
Sbjct: 38  LANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECL 97

Query: 38  ----------NATNRGDDTPLHLAAAHGHLDIVRLL 63
                        N   +TPL +A    H     LL
Sbjct: 98  KLLLRGKASIEIANESGETPLDIAKRLKHEHCEELL 133

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.7 bits (94), Expect = 3e-05
 Identities = 9/34 (26%), Positives = 16/34 (47%)

Query: 3   YVSVTDDHGFSPLHWACKEGHLKLVELLLQRGAR 36
            + + ++ G +PL  A +  H    ELL Q  + 
Sbjct: 106 SIEIANESGETPLDIAKRLKHEHCEELLTQALSG 139

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.6 bits (86), Expect = 3e-04
 Identities = 14/59 (23%), Positives = 19/59 (32%), Gaps = 9/59 (15%)

Query: 14 PLHWACKEGHLKLVELLLQRGARVNAT------NRGDDTPLHLAAA---HGHLDIVRLL 63
           L  A K   +  +      G  +         +  D+T LHLA        L IV  L
Sbjct: 9  SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFL 67

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (105), Expect = 3e-06
 Identities = 17/117 (14%), Positives = 38/117 (32%), Gaps = 8/117 (6%)

Query: 109 KISSGPNGDTWRGRWQKND-IVA-KILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIG 166
            + SG  G        +    VA K L     +   ++    E   L+   H NV+ ++ 
Sbjct: 25  PVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLD 84

Query: 167 CVNSPPDLVVISQYMA----WGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS 219
                  L   + +       G+    L +   +     +       + +G+ ++H+
Sbjct: 85  VFTPDETLDDFTDFYLVMPFMGTDLGKLMKHEKL--GEDRIQFLVYQMLKGLRYIHA 139

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (104), Expect = 4e-06
 Identities = 23/121 (19%), Positives = 40/121 (33%), Gaps = 10/121 (8%)

Query: 109 KISSGPNGDTWRGRWQKND-IVA-KILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIG 166
            I  G  G         N   VA K ++         +    E   L  F H N++ +  
Sbjct: 15  YIGEGAYGMVCSAYDNVNKVRVAIKKISPFE-HQTYCQRTLREIKILLRFRHENIIGIND 73

Query: 167 CVNSPP----DLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLER 222
            + +P       V +  ++    LY LL       +       F   + RG+ ++HS   
Sbjct: 74  IIRAPTIEQMKDVYLVTHLMGADLYKLLKTQH---LSNDHICYFLYQILRGLKYIHSANV 130

Query: 223 I 223
           +
Sbjct: 131 L 131

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 5e-06
 Identities = 11/30 (36%), Positives = 14/30 (46%)

Query: 13 SPLHWACKEGHLKLVELLLQRGARVNATNR 42
          + L  A   G L+ +  LLQ    VNA N 
Sbjct: 3  NELASAAARGDLEQLTSLLQNNVNVNAQNG 32

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (97), Expect = 1e-05
 Identities = 7/34 (20%), Positives = 12/34 (35%)

Query: 1   MYYVSVTDDHGFSPLHWACKEGHLKLVELLLQRG 34
              V   +  G +    A   G  ++V L+   G
Sbjct: 123 ASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 3e-04
 Identities = 9/27 (33%), Positives = 13/27 (48%)

Query: 37  VNATNRGDDTPLHLAAAHGHLDIVRLL 63
           V   N   DT   LA  +G  ++V L+
Sbjct: 126 VGHRNHKGDTACDLARLYGRNEVVSLM 152

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (103), Expect = 6e-06
 Identities = 26/130 (20%), Positives = 40/130 (30%), Gaps = 10/130 (7%)

Query: 100 SLNDLSLHTKISSGPNGDTWRGRWQKND--IVA-KILAVRNCTPRVSRDFNEE---FPKL 153
           +        +I  G  G  ++ R  KN    VA K + V+     +      E      L
Sbjct: 5   ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHL 64

Query: 154 RIFSHPNVLPVIGCVNSPP----DLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVD 209
             F HPNV+ +              + +        L   L +     V           
Sbjct: 65  ETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQ 124

Query: 210 VARGMAFLHS 219
           + RG+ FLHS
Sbjct: 125 LLRGLDFLHS 134

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 8e-06
 Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 3/66 (4%)

Query: 1   MYYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDD---TPLHLAAAHGHL 57
              V+  D  G++PLH A    ++++ + L++ GA V A    D             G+ 
Sbjct: 57  GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYT 116

Query: 58  DIVRLL 63
              + L
Sbjct: 117 QCSQFL 122

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 2e-04
 Identities = 5/27 (18%), Positives = 11/27 (40%)

Query: 13 SPLHWACKEGHLKLVELLLQRGARVNA 39
          + L  +  EG   LV+ ++      + 
Sbjct: 3  ALLLDSSLEGEFDLVQRIIYEVDDPSL 29

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 42.5 bits (99), Expect = 2e-05
 Identities = 19/133 (14%), Positives = 45/133 (33%), Gaps = 9/133 (6%)

Query: 106 LHTKISSGPNGDTWRGRWQKND-IVA-KILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLP 163
           +  +I  G  G  + G    N+  VA K    R+  P++  ++       ++ +    +P
Sbjct: 9   VGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDAPQLRDEYRT----YKLLAGCTGIP 64

Query: 164 VIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERI 223
            +          V+   +   SL  LL    G           A  +   +  +H    +
Sbjct: 65  NVYYFGQEGLHNVLVIDLLGPSLEDLLDL-CGRKFSVKTVAMAAKQMLARVQSIHEK-SL 122

Query: 224 IPQYQLNSRHVMV 236
           + +  +   + ++
Sbjct: 123 VYR-DIKPDNFLI 134

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 2e-05
 Identities = 22/142 (15%), Positives = 42/142 (29%), Gaps = 13/142 (9%)

Query: 90  DATLSRHKGISLNDLSLHTKISSGPNGDTWRGRWQKND-IVA-KILAVRNCTPRVSRDFN 147
              +       L        I SG  G          D  VA K L+        ++   
Sbjct: 5   SVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAY 64

Query: 148 EEFPKLRIFSHPNVLPVIGCVNSPP------DLVVISQYMAWGSLYALLHEGAGIVVDFA 201
            E   ++  +H N++ ++             D+ ++ + M       +  E     +D  
Sbjct: 65  RELVLMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQME-----LDHE 119

Query: 202 QALRFAVDVARGMAFLHSLERI 223
           +       +  G+  LHS   I
Sbjct: 120 RMSYLLYQMLCGIKHLHSAGII 141

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (99), Expect = 2e-05
 Identities = 24/149 (16%), Positives = 50/149 (33%), Gaps = 11/149 (7%)

Query: 81  WLGLKTRSRDATLSRHKG-ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVR--- 136
            L +K   R A L+ H   + + +  L   + +G  G  +  R        K+ A++   
Sbjct: 2   LLTVKHELRTANLTGHAEKVGIENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLK 61

Query: 137 ----NCTPRVSRDFNEEFPKLRIFSH-PNVLPVIGCVNSPPDLVVISQYMAWGSLYALLH 191
                   + +     E   L      P ++ +     +   L +I  Y+  G L+  L 
Sbjct: 62  KATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETKLHLILDYINGGELFTHLS 121

Query: 192 EGAGIVVDFAQALRFAVDVARGMAFLHSL 220
           +         +   +  ++   +  LH L
Sbjct: 122 QRERFTEH--EVQIYVGEIVLALEHLHKL 148

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 2e-05
 Identities = 19/120 (15%), Positives = 46/120 (38%), Gaps = 4/120 (3%)

Query: 101 LNDLSLHTKISSGPNGDTWRGRWQK-NDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFSH 158
           +       KI  G  G  ++ + ++ ++IVA K + + +    V      E   L+   H
Sbjct: 1   MQKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKH 60

Query: 159 PNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH 218
            N++ +   ++S   L ++ ++               +  +  +   F   + +G+ F H
Sbjct: 61  KNIVRLHDVLHSDKKLTLVFEFCDQDLKKYFDSCNGDLDPEIVK--SFLFQLLKGLGFCH 118

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (97), Expect = 4e-05
 Identities = 20/118 (16%), Positives = 39/118 (33%), Gaps = 10/118 (8%)

Query: 109 KISSGPNGDTWRGRWQKND-IVA-KILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIG 166
            + SG  G        K    VA K L+    +   ++    E   L+   H NV+ ++ 
Sbjct: 25  PVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLD 84

Query: 167 CVNSPPDL-----VVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS 219
                  L     V +  ++    L  ++       +           + RG+ ++HS
Sbjct: 85  VFTPARSLEEFNDVYLVTHLMGADLNNIVKCQK---LTDDHVQFLIYQILRGLKYIHS 139

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (95), Expect = 6e-05
 Identities = 20/130 (15%), Positives = 44/130 (33%), Gaps = 12/130 (9%)

Query: 100 SLNDLSLHTKISSGPNGDTWRGRWQKND-IVA-KILAVRNCTPRVSRDFNEEFPKLRIFS 157
            ++      KI  G  G+ ++ R +K    VA K + + N           E   L++  
Sbjct: 8   EVSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLK 67

Query: 158 HPNVLPVIGCVNSPP--------DLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVD 209
           H NV+ +I    +           + ++  +        L +         ++  R    
Sbjct: 68  HENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKF--TLSEIKRVMQM 125

Query: 210 VARGMAFLHS 219
           +  G+ ++H 
Sbjct: 126 LLNGLYYIHR 135

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (81), Expect = 8e-04
 Identities = 10/31 (32%), Positives = 14/31 (45%)

Query: 9  DHGFSPLHWACKEGHLKLVELLLQRGARVNA 39
          +     L  A   G ++ V  LL+ GA  NA
Sbjct: 1  EPSADWLATAAARGRVEEVRALLEAGANPNA 31

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (79), Expect = 0.002
 Identities = 8/32 (25%), Positives = 12/32 (37%)

Query: 1   MYYVSVTDDHGFSPLHWACKEGHLKLVELLLQ 32
              + V D  G  P+  A + GH  +   L  
Sbjct: 92  GARLDVRDAWGRLPVDLAEELGHRDVARYLRA 123

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.5 bits (77), Expect = 0.003
 Identities = 8/26 (30%), Positives = 12/26 (46%)

Query: 38  NATNRGDDTPLHLAAAHGHLDIVRLL 63
           +  +     P+ LA   GH D+ R L
Sbjct: 96  DVRDAWGRLPVDLAEELGHRDVARYL 121

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.1 bits (76), Expect = 0.004
 Identities = 6/19 (31%), Positives = 8/19 (42%)

Query: 45 DTPLHLAAAHGHLDIVRLL 63
          D     A  +G LD V+  
Sbjct: 3  DKEFMWALKNGDLDEVKDY 21

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	239
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	100.0
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	100.0
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	100.0
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	100.0
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	100.0
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	100.0
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	100.0
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	100.0
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	100.0
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	100.0
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	100.0
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	100.0
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	100.0
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	100.0
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	100.0
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	99.98
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	99.98
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	99.98
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.98
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	99.98
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	99.98
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	99.98
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	99.98
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	99.98
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	99.97
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	99.97
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	99.97
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	99.97
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	99.97
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	99.97
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	99.97
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	99.97
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	99.97
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	99.97
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	99.97
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	99.97
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	99.97
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	99.97
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	99.97
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	99.97
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	99.97
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	99.97
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	99.97
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	99.96
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	99.96
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	99.96
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	99.96
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	99.96
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	99.96
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	99.96
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	99.96
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	99.96
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	99.95
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	99.95
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	99.95
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	99.95
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	99.94
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	99.94
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.87
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	99.86
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.83
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.78
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.76
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.75
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.71
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.7
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.66
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.66
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.66
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.65
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.65
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.63
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.62
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.62
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.62
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.6
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.6
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.58
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.58
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.57
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.56
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.56
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.56
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.54
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.54
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.53
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.52
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.5
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.5
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.49
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.44
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.44
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.43
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.41
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.4
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.36
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.35
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.25
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	98.35
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	97.78
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	97.43
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	95.21
d1nw1a_	395	Choline kinase {Caenorhabditis elegans [TaxId: 623	95.06

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.7e-35  Score=225.19  Aligned_cols=137  Identities=21%  Similarity=0.438  Sum_probs=122.6

Q ss_pred             ccCCCCCCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCc
Q psy12580         96 HKGISLNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPD  173 (239)
Q Consensus        96 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~  173 (239)
                      .++++.++|++.+.||+|+||.||+|.+.  +..+|+|++.....   ..+.+.+|+.+|++++||||+++++++..++.
T Consensus        11 ~wei~~~~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~---~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~   87 (287)
T d1opja_          11 KWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM---EVEEFLKEAAVMKEIKHPNLVQLLGVCTREPP   87 (287)
T ss_dssp             TTBCCGGGEEEEEETTTTTTSSEEEEEEGGGTEEEEEEECCTTCS---CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred             ccEecHHHeEEeeEEeeCCCeEEEEEEECCCCeEEEEEEECCccc---hHHHHHHHHHHHHhCCCCCEecCCccEeeCCe
Confidence            45678889999999999999999999884  55688888754322   34678999999999999999999999999999


Q ss_pred             eEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        174 LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .++|||||++|+|.+++.......+++..+..++.||++||+|||+.+  ||||||||+|||||
T Consensus        88 ~~iv~E~~~~g~l~~~l~~~~~~~~~~~~~~~i~~qi~~gL~yLH~~~--iiHrDlKp~NILl~  149 (287)
T d1opja_          88 FYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKN--FIHRDLAARNCLVG  149 (287)
T ss_dssp             CEEEEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSGGGEEEC
T ss_pred             eEEEeecccCcchHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHCC--cccCccccCeEEEC
Confidence            999999999999999998765557999999999999999999999999  99999999999997

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-35  Score=224.04  Aligned_cols=136  Identities=28%  Similarity=0.491  Sum_probs=122.2

Q ss_pred             cCCCCCCCcccccccCCCCCCceeeccCCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEE
Q psy12580         97 KGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVV  176 (239)
Q Consensus        97 ~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~l  176 (239)
                      ++++.++|.+.+.||+|+||.||+|.+++ .+++|++..........+.|.+|+.+|++++||||+++++++.. +.+++
T Consensus         3 wei~~~~~~~~~~lG~G~fg~Vy~~~~~~-~vAvK~~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~~~~~~-~~~~l   80 (276)
T d1uwha_           3 WEIPDGQITVGQRIGSGSFGTVYKGKWHG-DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTA-PQLAI   80 (276)
T ss_dssp             CBCCTTCCCCCSEEEECSSCEEEEEESSS-EEEEEECCCSSCCTTHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEE
T ss_pred             cccccccEEEEEEEeeCCCcEEEEEEECC-EEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeeeEEEec-cEEEE
Confidence            46778899999999999999999999865 58999987766666677889999999999999999999998765 46899


Q ss_pred             EEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        177 ISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       177 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |||||++|+|.+++..... .+++..+..++.||++||+|||+.+  ||||||||+|||||
T Consensus        81 v~Ey~~~g~L~~~l~~~~~-~~~~~~~~~i~~qi~~gl~yLH~~~--ivHrDlKp~NiLl~  138 (276)
T d1uwha_          81 VTQWCEGSSLYHHLHIIET-KFEMIKLIDIARQTAQGMDYLHAKS--IIHRDLKSNNIFLH  138 (276)
T ss_dssp             EEECCCEEEHHHHHHTSCC-CCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEEE
T ss_pred             EEecCCCCCHHHHHhhccC-CCCHHHHHHHHHHHHHHHHHHhcCC--EeccccCHHHEEEc
Confidence            9999999999999976542 5999999999999999999999999  99999999999997

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-34  Score=217.69  Aligned_cols=133  Identities=24%  Similarity=0.386  Sum_probs=118.6

Q ss_pred             CCCCCCcccccccCCCCCCceeeccC-CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEE
Q psy12580         99 ISLNDLSLHTKISSGPNGDTWRGRWQ-KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVI  177 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv  177 (239)
                      +++++|++.+.||+|+||.||+|.+. ++.+|+|++.....   ..+++.+|+.++++++||||++++|++..++..++|
T Consensus         2 idp~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~---~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~lv   78 (263)
T d1sm2a_           2 IDPSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM---SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLV   78 (263)
T ss_dssp             BCCSCEEEEEEEECCSSCCEEEEEETTTEEEEEEECCSSSS---CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEE
T ss_pred             CChHHcEEEEEEeeCCCeEEEEEEECCCCEEEEEEECCCcC---cHHHHHHHHHHHHhcCCCCcccccceeccCCceEEE
Confidence            45678999999999999999999985 45688898865332   236799999999999999999999999999999999


Q ss_pred             EeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        178 SQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       178 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |||+++|+|.+++.... ..+++..+..++.||++||+|||+.+  |+||||||+|||+|
T Consensus        79 ~E~~~~g~L~~~l~~~~-~~~~~~~~~~i~~qia~gl~~lH~~~--iiHrDlKp~Nill~  135 (263)
T d1sm2a_          79 FEFMEHGCLSDYLRTQR-GLFAAETLLGMCLDVCEGMAYLEEAC--VIHRDLAARNCLVG  135 (263)
T ss_dssp             EECCTTCBHHHHHHTTT-TCCCHHHHHHHHHHHHHHHHHHHHTT--CCCTTCSGGGEEEC
T ss_pred             EEecCCCcHHHHhhccc-cCCCHHHHHHHHHHHHHHHHhhhccc--eeecccchhheeec
Confidence            99999999999987654 25899999999999999999999999  99999999999997

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-34  Score=219.10  Aligned_cols=132  Identities=20%  Similarity=0.311  Sum_probs=116.3

Q ss_pred             CcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeC----CCceEEE
Q psy12580        104 LSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNS----PPDLVVI  177 (239)
Q Consensus       104 ~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~----~~~~~lv  177 (239)
                      +++.+.||+|+||.||+|.+.  +..+++|.+..........+.+.+|+.+|++++||||+++++++..    ...+++|
T Consensus        11 ~~~~~~iG~G~fg~Vy~~~~~~~~~~va~K~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~~~iv   90 (270)
T d1t4ha_          11 LKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLV   90 (270)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEEE
T ss_pred             EEeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEeeccccCCEEEEE
Confidence            466778999999999999874  4567788887766666666789999999999999999999999854    3468999


Q ss_pred             EeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        178 SQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       178 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |||+++|+|.+++.+..  .+++..++.++.||++||+|||+.+++||||||||+|||++
T Consensus        91 mE~~~~g~L~~~l~~~~--~~~~~~~~~~~~qi~~gl~yLH~~~~~IiHrDiKp~NILl~  148 (270)
T d1t4ha_          91 TELMTSGTLKTYLKRFK--VMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFIT  148 (270)
T ss_dssp             EECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHTSSSCCCCSCCCGGGEEES
T ss_pred             EeCCCCCcHHHHHhccc--cccHHHHHHHHHHHHHHHHHHHHCCCCEEeCCcChhhceee
Confidence            99999999999998765  69999999999999999999999888899999999999995

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6e-35  Score=222.47  Aligned_cols=132  Identities=16%  Similarity=0.305  Sum_probs=115.7

Q ss_pred             CCCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEE
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVIS  178 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~  178 (239)
                      .++|++.+.||+|+||.||+|...  +..+|+|++..... ....+.+.+|+.++++++||||+++++++..++.++|||
T Consensus         4 ~~dy~~~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~-~~~~~~~~~Ei~~l~~l~HpnIv~~~~~~~~~~~~~ivm   82 (271)
T d1nvra_           4 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRA-VDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFL   82 (271)
T ss_dssp             TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC--------CHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             CcceEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhc-chHHHHHHHHHHHHHhCCCCCEeeEeeeeccCceeEEEE
Confidence            367899999999999999999873  56788899865432 223457889999999999999999999999999999999


Q ss_pred             eeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        179 QYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       179 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |||++|+|.+++....  .+++..++.++.||++||+|||+.|  ||||||||+|||++
T Consensus        83 Ey~~gg~L~~~l~~~~--~l~e~~~~~i~~qi~~al~ylH~~~--IiHrDiKp~NILl~  137 (271)
T d1nvra_          83 EYCSGGELFDRIEPDI--GMPEPDAQRFFHQLMAGVVYLHGIG--ITHRDIKPENLLLD  137 (271)
T ss_dssp             ECCTTEEGGGGSBTTT--BCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCCGGGEEEC
T ss_pred             eccCCCcHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHHcC--CccCcccHHHEEEC
Confidence            9999999999998765  7999999999999999999999999  99999999999996

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-34  Score=224.65  Aligned_cols=135  Identities=15%  Similarity=0.279  Sum_probs=120.0

Q ss_pred             CCCCCCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceE
Q psy12580         98 GISLNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLV  175 (239)
Q Consensus        98 ~~~~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~  175 (239)
                      ++..++|++.+.||+|+||.||+|...  +..+|+|++.... .+.....+.+|+.+|+.++||||+++++++...+.++
T Consensus         2 el~~d~y~~~~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~-~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~   80 (322)
T d1s9ja_           2 ELKDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEI-KPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEIS   80 (322)
T ss_dssp             CCCGGGEEEEEEEECCSSCCEEEEEETTTTEEEEEEEEECCC-CTTHHHHHHHHGGGGGGCCCTTBCCEEEEEECSSEEE
T ss_pred             CCCccCCEEEEEEecCCCeEEEEEEECCCCcEEEEEEEChhh-CHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEE
Confidence            355678999999999999999999873  5667778886542 3445577899999999999999999999999999999


Q ss_pred             EEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhc-CCCCcccCCCCCccceee
Q psy12580        176 VISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS-LERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       176 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~-~~~~ivHrdikp~Nill~  237 (239)
                      +||||+++|+|.+++.+.+  .+++..++.++.|++.||.|||+ .+  |+||||||+||||+
T Consensus        81 iVmEy~~gg~L~~~l~~~~--~l~~~~~~~~~~qil~aL~yLH~~~~--IiHRDiKP~NILl~  139 (322)
T d1s9ja_          81 ICMEHMDGGSLDQVLKKAG--RIPEQILGKVSIAVIKGLTYLREKHK--IMHRDVKPSNILVN  139 (322)
T ss_dssp             EEEECCTTEEHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHHHC--CCCSCCSGGGEEEC
T ss_pred             EEEEcCCCCcHHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHHHhCC--EEccccCHHHeeEC
Confidence            9999999999999998765  69999999999999999999997 58  99999999999986

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.9e-34  Score=217.91  Aligned_cols=129  Identities=18%  Similarity=0.290  Sum_probs=116.3

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEe
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQ  179 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e  179 (239)
                      ..|...+.||+|+||.||+|..  .+..+|+|++.......  .+.+.+|+.+++.++||||+++++++..++.++||||
T Consensus        20 ~~Y~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~~~~~--~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmE   97 (293)
T d1yhwa1          20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPK--KELIINEILVMRENKNPNIVNYLDSYLVGDELWVVME   97 (293)
T ss_dssp             TTBCSCEECCCSSSCEEEEEEBTTTCCEEEEEEEEGGGCSC--HHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             cccEEEEEEecCcCcEEEEEEECCCCCEEEEEEEecccChH--HHHHHHHHHHHHhCCCCCEeeEeEEEEECCEEEEEEE
Confidence            4688899999999999999986  46788889887654332  3678999999999999999999999999999999999


Q ss_pred             eCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       180 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||++|+|.+++...   .+++..++.++.||+.||+|||+.|  ||||||||+|||++
T Consensus        98 y~~gg~L~~~~~~~---~l~~~~~~~i~~qi~~aL~yLH~~~--iiHrDiKp~NILl~  150 (293)
T d1yhwa1          98 YLAGGSLTDVVTET---CMDEGQIAAVCRECLQALEFLHSNQ--VIHRDIKSDNILLG  150 (293)
T ss_dssp             CCTTCBHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEEC
T ss_pred             ecCCCcHHHHhhcc---CCCHHHHHHHHHHHHHHHHHHHHCC--CcccCCcHHHeEEC
Confidence            99999999998775   4899999999999999999999999  99999999999996

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-34  Score=218.46  Aligned_cols=133  Identities=18%  Similarity=0.347  Sum_probs=118.0

Q ss_pred             CCCCcccccccCCCCCCceeeccC--CCceeeeeeeeccC-CchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEE
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNC-TPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVI  177 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv  177 (239)
                      .++|++.+.||+|+||.||+|...  +..+|+|++..... .......+.+|+.+++.++||||+++++++.+++.+++|
T Consensus         5 l~dy~i~~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~iv   84 (263)
T d2j4za1           5 LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLI   84 (263)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hhHeEEEEEEecCCCcEEEEEEECCCCcEEEEEEEchHHccChHHHHHHHHHHHHHHhcCCCCCCeEEEEEEECCEEEEE
Confidence            467899999999999999999874  56778898865422 123346788999999999999999999999999999999


Q ss_pred             EeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        178 SQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       178 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||||++|+|.+++....  .+++..+..++.||++||+|||+.|  ||||||||+|||++
T Consensus        85 mEy~~~g~L~~~l~~~~--~l~e~~~~~i~~qi~~al~~lH~~~--ivHrDiKp~Nill~  140 (263)
T d2j4za1          85 LEYAPLGTVYRELQKLS--KFDEQRTATYITELANALSYCHSKR--VIHRDIKPENLLLG  140 (263)
T ss_dssp             EECCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCGGGEEEC
T ss_pred             EeecCCCcHHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHHHCC--eeeeeeccccceec
Confidence            99999999999998765  6999999999999999999999999  99999999999996

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.1e-34  Score=218.42  Aligned_cols=137  Identities=22%  Similarity=0.411  Sum_probs=119.5

Q ss_pred             cccCCCCCCCcccccccCCCCCCceeeccCC-CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCc
Q psy12580         95 RHKGISLNDLSLHTKISSGPNGDTWRGRWQK-NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPD  173 (239)
Q Consensus        95 ~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~-~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~  173 (239)
                      ..++++.++|++.+.||+|+||.||+|.+++ ..+|+|++.....   ..+.+.+|+.++++++||||++++|++.. +.
T Consensus         6 ~~wei~~~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~~~~~~~---~~~~~~~E~~~l~~l~HpnIv~~~g~~~~-~~   81 (272)
T d1qpca_           6 DEWEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSM---SPDAFLAEANLMKQLQHQRLVRLYAVVTQ-EP   81 (272)
T ss_dssp             CTTBCCGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSS---CHHHHHHHHHHHHHCCCTTBCCEEEEECS-SS
T ss_pred             CCeecCHHHeEEeEEEecCCCcEEEEEEECCCCEEEEEEEccCcC---CHHHHHHHHHHHHhCCCCCEeEEEeeecc-CC
Confidence            3456778899999999999999999999865 5688898864332   23679999999999999999999998865 46


Q ss_pred             eEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        174 LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .++||||+++|+|.+++....+..+++..+..++.||++||.|||+.+  |+||||||+|||||
T Consensus        82 ~~iv~Ey~~~g~L~~~~~~~~~~~l~~~~~~~i~~qi~~gl~~lH~~~--ivHrDiKp~NIll~  143 (272)
T d1qpca_          82 IYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERN--YIHRDLRAANILVS  143 (272)
T ss_dssp             CEEEEECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEEC
T ss_pred             eEEEEEeCCCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC--cccCccchhheeee
Confidence            799999999999999887655446899999999999999999999999  99999999999997

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5e-34  Score=219.17  Aligned_cols=135  Identities=14%  Similarity=0.177  Sum_probs=119.7

Q ss_pred             CCCCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccC-CchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceE
Q psy12580         99 ISLNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNC-TPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLV  175 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~  175 (239)
                      ...++|++.+.||+|+||.||+|..  .+..+|+|++..... .....+.+.+|+.+|++++||||+++++++...+.++
T Consensus         5 ~~p~dy~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~   84 (288)
T d1uu3a_           5 KRPEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLY   84 (288)
T ss_dssp             CCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCSTTBCCEEEEEECSSEEE
T ss_pred             CCCCCCEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccCHHHHHHHHHHHHHHHHcCCCCeeEEEEEEEECCEEE
Confidence            3457899999999999999999987  357788898865432 2233467899999999999999999999999999999


Q ss_pred             EEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        176 VISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       176 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +|||||++|+|.+++...+  .+++..++.++.|++.||+|||+.+  ||||||||+|||++
T Consensus        85 ivmEy~~gg~L~~~~~~~~--~l~e~~~~~~~~qi~~al~ylH~~~--iiHrDiKp~NIll~  142 (288)
T d1uu3a_          85 FGLSYAKNGELLKYIRKIG--SFDETCTRFYTAEIVSALEYLHGKG--IIHRDLKPENILLN  142 (288)
T ss_dssp             EEECCCTTEEHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEEC
T ss_pred             EEEEccCCCCHHHhhhccC--CCCHHHHHHHHHHHHHHHHhhcccc--EEcCcCCccccccC
Confidence            9999999999999998766  6999999999999999999999999  99999999999996

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-33  Score=216.25  Aligned_cols=125  Identities=19%  Similarity=0.362  Sum_probs=108.3

Q ss_pred             ccccCCCCCCceeeccCC----CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEeeCCC
Q psy12580        108 TKISSGPNGDTWRGRWQK----NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAW  183 (239)
Q Consensus       108 ~~ig~g~~g~v~~~~~~~----~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~~~  183 (239)
                      +.||+|+||.||+|.+++    ..+|+|++.....++...+.+.+|+.+|++++||||+++++++..+ ..+||||||++
T Consensus        13 k~iG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~g~~~~~-~~~lvmE~~~~   91 (277)
T d1xbba_          13 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAE-SWMLVMEMAEL   91 (277)
T ss_dssp             EEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEESS-SEEEEEECCTT
T ss_pred             CCcccCCCeEEEEEEEccCCcCeEEEEEEEChhhCCHHHHHHHHHHHHHHHhCCCCCCceEEEEeccC-CEEEEEEcCCC
Confidence            469999999999998632    3578898876555566667899999999999999999999999654 57899999999


Q ss_pred             CCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        184 GSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       184 gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |+|.++++...  .+++..+..++.||++||+|||+.+  ||||||||+|||++
T Consensus        92 g~L~~~l~~~~--~l~~~~~~~i~~qi~~gl~ylH~~~--iiHrDlKp~Nill~  141 (277)
T d1xbba_          92 GPLNKYLQQNR--HVKDKNIIELVHQVSMGMKYLEESN--FVHRDLAARNVLLV  141 (277)
T ss_dssp             EEHHHHHHHCT--TCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEEE
T ss_pred             CcHHHHHhhcc--CCCHHHHHHHHHHHHHHHhhHHhCC--cccCCCcchhhccc
Confidence            99999998866  6999999999999999999999999  99999999999997

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.6e-34  Score=218.63  Aligned_cols=131  Identities=15%  Similarity=0.250  Sum_probs=115.7

Q ss_pred             CCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEe
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQ  179 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e  179 (239)
                      +.|++.+.||+|+||.||+|.+.  +..+|+|++....  ....+.+.+|+.+|++++||||+++++++..++.+++|||
T Consensus        12 d~Y~i~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~--~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lvmE   89 (288)
T d2jfla1          12 DFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKS--EEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIE   89 (288)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECSS--SGGGGGTHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             cCeEEeEEEeeCCCcEEEEEEECCCCeEEEEEEECcCC--HHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCeEEEEEe
Confidence            45788899999999999999873  4567788876542  3344678899999999999999999999999999999999


Q ss_pred             eCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       180 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||++|+|.+++.+.. ..+++..+..++.||++||.|||++|  ||||||||+|||++
T Consensus        90 y~~~g~L~~~~~~~~-~~l~e~~~~~i~~qi~~gL~ylH~~~--ivHrDiKp~NIll~  144 (288)
T d2jfla1          90 FCAGGAVDAVMLELE-RPLTESQIQVVCKQTLDALNYLHDNK--IIHRDLKAGNILFT  144 (288)
T ss_dssp             CCTTEEHHHHHHHHT-SCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEEC
T ss_pred             cCCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCC--EEEeecChhheeEC
Confidence            999999999987643 25999999999999999999999999  99999999999996

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.5e-34  Score=216.35  Aligned_cols=137  Identities=19%  Similarity=0.236  Sum_probs=111.7

Q ss_pred             CCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeC--CCceEE
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNS--PPDLVV  176 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~--~~~~~l  176 (239)
                      .++|++.+.||+|+||.||+|..  .+..+|+|.+..........+.+.+|+.++++++||||+++++++..  .+.+++
T Consensus         3 ~edy~~~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~i   82 (269)
T d2java1           3 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYI   82 (269)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCTTSCHHHHHHHHHHHHHTTSCCCTTBCCEEEEEEC----CEEE
T ss_pred             chhCEEeEEEecCCCeEEEEEEECCCCCEEEEEEEChhhCCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEeCCCCEEEE
Confidence            36789999999999999999987  35678889987776666666789999999999999999999998854  457899


Q ss_pred             EEeeCCCCCHHHHhhcC--CCcccCHHHHHHHHHHHHHHhhhhhcCC---CCcccCCCCCccceee
Q psy12580        177 ISQYMAWGSLYALLHEG--AGIVVDFAQALRFAVDVARGMAFLHSLE---RIIPQYQLNSRHVMVY  237 (239)
Q Consensus       177 v~e~~~~gsL~~~l~~~--~~~~~~~~~~~~~~~~i~~~l~~lH~~~---~~ivHrdikp~Nill~  237 (239)
                      |||||++|+|.+++...  .+..+++..++.++.|++.||.|||+.+   .+||||||||+||||+
T Consensus        83 vmEy~~~g~L~~~i~~~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~~~~~~IiHrDiKp~NIll~  148 (269)
T d2java1          83 VMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLD  148 (269)
T ss_dssp             EEECCTTEEHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHCC---------CCGGGEEEC
T ss_pred             EEecCCCCcHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEeCcCchhhcCcC
Confidence            99999999999999642  1236999999999999999999999864   2499999999999997

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-33  Score=211.22  Aligned_cols=132  Identities=24%  Similarity=0.413  Sum_probs=118.4

Q ss_pred             CCCCCcccccccCCCCCCceeeccCCC-ceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEE
Q psy12580        100 SLNDLSLHTKISSGPNGDTWRGRWQKN-DIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVIS  178 (239)
Q Consensus       100 ~~~~~~~~~~ig~g~~g~v~~~~~~~~-~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~  178 (239)
                      +.++|++.+.||+|+||.||+|+++++ .+|+|++......   .+.+.+|+.++++++||||++++|++..++.+++||
T Consensus         2 ~~~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~l~~~~~~---~~~~~~Ev~~~~~l~HpnIv~~~g~~~~~~~~~iv~   78 (258)
T d1k2pa_           2 DPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMS---EDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIIT   78 (258)
T ss_dssp             CCCCCCCCCCCCEETTEEEEEEEETTTEEEEEEEEESSSSC---HHHHHHHHHHHHTCCCTTBCCEEEEECCSSSEEEEE
T ss_pred             ChHHCEEeEEEecCCCeEEEEEEECCCCEEEEEEECcCcCC---HHHHHHHHHHHHhcCCCceeeEEEEEeeCCceEEEE
Confidence            567899999999999999999999654 6778988754333   367999999999999999999999999999999999


Q ss_pred             eeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        179 QYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       179 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||+++|+|.+++..... .+++..+.+++.|+++||+|||+.+  |+||||||+|||+|
T Consensus        79 Ey~~~g~l~~~~~~~~~-~~~~~~~~~i~~qi~~gl~~LH~~~--iiH~dlk~~Nill~  134 (258)
T d1k2pa_          79 EYMANGCLLNYLREMRH-RFQTQQLLEMCKDVCEAMEYLESKQ--FLHRDLAARNCLVN  134 (258)
T ss_dssp             ECCTTEEHHHHHHSGGG-CCCHHHHHHHHHHHHHHHHHHHHTT--BCCSCCSGGGEEEC
T ss_pred             EccCCCcHHHhhhcccc-CCcHHHHHHHHHHHHHHHHHHhhcC--cccccccceeEEEc
Confidence            99999999999876542 5899999999999999999999999  99999999999997

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.8e-33  Score=215.64  Aligned_cols=136  Identities=25%  Similarity=0.450  Sum_probs=116.4

Q ss_pred             CCCCCCCcccccccCCCCCCceeeccC--CCc---eeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCC
Q psy12580         98 GISLNDLSLHTKISSGPNGDTWRGRWQ--KND---IVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP  172 (239)
Q Consensus        98 ~~~~~~~~~~~~ig~g~~g~v~~~~~~--~~~---~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~  172 (239)
                      ++..++|++.+.||+|+||.||+|.+.  ++.   +++|.+.. .......+.|.+|+.+|++++|||||+++|++..++
T Consensus        22 ~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~-~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~~  100 (299)
T d1jpaa_          22 EIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKS-GYTEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKST  100 (299)
T ss_dssp             BCCGGGEEEEEEEEECSSSEEEEEEECC---CCEEEEEEECCS-SCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSS
T ss_pred             hhChhhcEEeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECc-ccCHHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCC
Confidence            456678899999999999999999874  222   44455433 233445578999999999999999999999999999


Q ss_pred             ceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        173 DLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       173 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .+++|||||++|+|.+++....+ .+++.++..++.||++||.|||+.+  ||||||||+|||||
T Consensus       101 ~~~iv~Ey~~~g~L~~~~~~~~~-~l~~~~~~~i~~qia~gl~yLH~~~--iiHrDlKp~NILl~  162 (299)
T d1jpaa_         101 PVMIITEFMENGSLDSFLRQNDG-QFTVIQLVGMLRGIAAGMKYLADMN--YVHRDLAARNILVN  162 (299)
T ss_dssp             SCEEEEECCTTEEHHHHHHTTTT-CSCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEEC
T ss_pred             EEEEEEEecCCCcceeeeccccC-CCCHHHHHHHHHHHHHHHHHHhhCC--CccCccccceEEEC
Confidence            99999999999999999887543 5899999999999999999999999  99999999999997

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-33  Score=216.00  Aligned_cols=132  Identities=23%  Similarity=0.376  Sum_probs=118.1

Q ss_pred             CCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCc----hHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceE
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTP----RVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLV  175 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~----~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~  175 (239)
                      +.|++.+.||+|+||.||+|...  +..+|+|++.......    ...+.+.+|+.+|++++||||+++++++.+.+.++
T Consensus        10 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~   89 (293)
T d1jksa_          10 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVI   89 (293)
T ss_dssp             GTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             cCEEEeEEEecCCCeEEEEEEECCCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEE
Confidence            45889999999999999999873  5778889986543222    23567899999999999999999999999999999


Q ss_pred             EEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        176 VISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       176 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||||||++|+|.+++....  .+++..++.++.|++.||+|||+.+  ||||||||+|||++
T Consensus        90 iv~E~~~gg~L~~~i~~~~--~l~~~~~~~~~~qi~~al~yLH~~~--ivHrDiKp~Nill~  147 (293)
T d1jksa_          90 LILELVAGGELFDFLAEKE--SLTEEEATEFLKQILNGVYYLHSLQ--IAHFDLKPENIMLL  147 (293)
T ss_dssp             EEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEES
T ss_pred             EEEEcCCCccccchhcccc--ccchhHHHHHHHHHHHHHHhhhhcc--eeecccccceEEEe
Confidence            9999999999999998765  6999999999999999999999999  99999999999985

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=3.8e-33  Score=216.30  Aligned_cols=131  Identities=16%  Similarity=0.197  Sum_probs=115.6

Q ss_pred             CCcccccccCCCCCCceeecc--CCCceeeeeeeeccCC-chHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEe
Q psy12580        103 DLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCT-PRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQ  179 (239)
Q Consensus       103 ~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e  179 (239)
                      .|+..+.||+|+||.||+|..  .+..+|+|++...... ....+.+.+|+.+|++++||||+++++++..++.+++|||
T Consensus        16 ~y~~l~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv~E   95 (309)
T d1u5ra_          16 LFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVME   95 (309)
T ss_dssp             HEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEECCSSCHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             hcEeeEEEecCCCeEEEEEEECCCCcEEEEEEEchhhccCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEECCEEEEEEE
Confidence            377888999999999999986  4566888988765433 3344678999999999999999999999999999999999


Q ss_pred             eCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       180 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||++|+|..++....  .+++..++.++.||+.||.|||+.|  ||||||||+|||++
T Consensus        96 ~~~~g~l~~~~~~~~--~l~e~~~~~i~~qi~~aL~yLH~~~--iiHrDiKp~NILl~  149 (309)
T d1u5ra_          96 YCLGSASDLLEVHKK--PLQEVEIAAVTHGALQGLAYLHSHN--MIHRDVKAGNILLS  149 (309)
T ss_dssp             CCSEEHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHTT--CBCCCCSGGGEEEE
T ss_pred             ecCCCchHHHHHhCC--CCCHHHHHHHHHHHHHHHHHHHhCC--EeccCCCcceEEEC
Confidence            999999987777655  6999999999999999999999999  99999999999997

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.98  E-value=4.7e-33  Score=215.73  Aligned_cols=131  Identities=18%  Similarity=0.278  Sum_probs=112.6

Q ss_pred             CCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEe
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQ  179 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e  179 (239)
                      +.|++.+.||+|+||.||+|...  +..+|+|++....... ....+.+|+.+|+.++||||+++++++..++.++||||
T Consensus         9 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~-~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~lvmE   87 (307)
T d1a06a_           9 DIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEG-KEGSMENEIAVLHKIKHPNIVALDDIYESGGHLYLIMQ   87 (307)
T ss_dssp             GTEEEEEESBSGGGGGEEEEEETTTCCEEEEEEEEC-----------CHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred             cceEEEEEEeeccCeEEEEEEECCCCCEEEEEEEchHHhhh-HHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEe
Confidence            45889999999999999999873  5678889987654322 23568899999999999999999999999999999999


Q ss_pred             eCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       180 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||++|+|.+++...+  .+++..+..++.||+.||+|||+.+  ||||||||+|||++
T Consensus        88 ~~~gg~L~~~l~~~~--~l~e~~~~~~~~qi~~al~ylH~~~--iiHrDiKp~Nil~~  141 (307)
T d1a06a_          88 LVSGGELFDRIVEKG--FYTERDASRLIFQVLDAVKYLHDLG--IVHRDLKPENLLYY  141 (307)
T ss_dssp             CCCSCBHHHHHHTCS--CCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEES
T ss_pred             ccCCCcHHHhhhccc--CCCHHHHHHHHHHHHHHHHhhhhce--eeeEEecccceeec
Confidence            999999999998766  6999999999999999999999999  99999999999985

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.98  E-value=6.6e-33  Score=211.86  Aligned_cols=133  Identities=17%  Similarity=0.238  Sum_probs=118.1

Q ss_pred             CCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCc-------hHHHHHHHHHhHhhhcC-CCceeeeeeeeeC
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTP-------RVSRDFNEEFPKLRIFS-HPNVLPVIGCVNS  170 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~-------~~~~~~~~e~~~l~~l~-h~~iv~l~~~~~~  170 (239)
                      .++|++.+.||+|+||+||+|+.  .+..+|+|++.......       ...+.+.+|+.++++++ ||||+++++++.+
T Consensus         2 ~~~y~~~~~iG~G~~g~V~~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~   81 (277)
T d1phka_           2 YENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYET   81 (277)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEC
T ss_pred             cccCEEceEEecCcCeEEEEEEECCCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeeccc
Confidence            46889999999999999999987  45778889987654322       12346889999999996 9999999999999


Q ss_pred             CCceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        171 PPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       171 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ++.++||||||++|||.++++..+  .+++.+++.++.||++||+|||+.|  ||||||||+|||++
T Consensus        82 ~~~~~ivmE~~~~g~L~~~l~~~~--~l~e~~~~~~~~qi~~al~~lH~~~--ivHrDlkp~Nill~  144 (277)
T d1phka_          82 NTFFFLVFDLMKKGELFDYLTEKV--TLSEKETRKIMRALLEVICALHKLN--IVHRDLKPENILLD  144 (277)
T ss_dssp             SSEEEEEEECCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEEC
T ss_pred             CcceEEEEEcCCCchHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHcC--CcccccccceEEEc
Confidence            999999999999999999998766  6999999999999999999999999  99999999999996

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=4e-33  Score=213.82  Aligned_cols=136  Identities=22%  Similarity=0.438  Sum_probs=118.9

Q ss_pred             ccCCCCCCCcccccccCCCCCCceeeccCC-CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCce
Q psy12580         96 HKGISLNDLSLHTKISSGPNGDTWRGRWQK-NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDL  174 (239)
Q Consensus        96 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~-~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~  174 (239)
                      .++++.++|++.+.||+|+||.||+|.+++ ..+|+|++.....   ..+.|.+|+.+|++++|||||++++++.. +..
T Consensus        11 ~~~i~~~~~~i~~~iG~G~fg~Vy~~~~~~~~~vAiK~l~~~~~---~~~~~~~E~~~l~~l~h~nIv~~~g~~~~-~~~   86 (285)
T d1fmka3          11 AWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM---SPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPI   86 (285)
T ss_dssp             CSBCCGGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSS---CHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSC
T ss_pred             ceEcCHHHEEEeeEEeeCCCeEEEEEEECCCCEEEEEEECcccC---CHHHHHHHHHHHHhcccCCEeEEEEEEec-CCe
Confidence            456778899999999999999999999855 5677898864433   23679999999999999999999999854 568


Q ss_pred             EEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        175 VVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       175 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ++||||+++|+|.+++.......+++..++.++.||+.||.|||+.+  |+||||||+|||||
T Consensus        87 ~lv~Ey~~~g~l~~~~~~~~~~~l~~~~~~~i~~~i~~gl~~LH~~~--ivH~DlKp~NIll~  147 (285)
T d1fmka3          87 YIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMN--YVHRDLRAANILVG  147 (285)
T ss_dssp             EEEECCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSGGGEEEC
T ss_pred             EEEEEecCCCchhhhhhhcccccchHHHHHHHHHHHHHHHHHHhhhh--eecccccceEEEEC
Confidence            99999999999999987644346999999999999999999999999  99999999999997

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=1.7e-33  Score=213.55  Aligned_cols=135  Identities=24%  Similarity=0.420  Sum_probs=118.7

Q ss_pred             cCCCCCCCcccccccCCCCCCceeeccCCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeC-CCceE
Q psy12580         97 KGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNS-PPDLV  175 (239)
Q Consensus        97 ~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~-~~~~~  175 (239)
                      ++++.++|++.+.||+|+||.||+|.+++..+|+|++...    ...+.+.+|+.++++++||||++++|++.. .+.++
T Consensus         2 w~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~vAvK~i~~~----~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~   77 (262)
T d1byga_           2 WALNMKELKLLQTIGKGEFGDVMLGDYRGNKVAVKCIKND----ATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLY   77 (262)
T ss_dssp             CBCCGGGEEEEEEEEECSSCEEEEEEETTEEEEEEECCCC----C--HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCE
T ss_pred             CccCHHHeEEeEEEecCCCeEEEEEEECCeEEEEEEECcH----HHHHHHHHHHHHHHhCCCCCEeeEEEEEEecCCcEE
Confidence            4577788999999999999999999999999999988543    233678999999999999999999998854 45789


Q ss_pred             EEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        176 VISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       176 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +||||+++|+|.+++.......+++..++.++.||+.||.|||+.+  ||||||||+|||++
T Consensus        78 lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~al~ylH~~~--ivH~dlkp~Nil~~  137 (262)
T d1byga_          78 IVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNN--FVHRDLAARNVLVS  137 (262)
T ss_dssp             EEECCCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSGGGEEEC
T ss_pred             EEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHhhccccccCc--eeccccchHhheec
Confidence            9999999999999997654346899999999999999999999999  99999999999987

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=1e-32  Score=211.69  Aligned_cols=134  Identities=16%  Similarity=0.304  Sum_probs=113.8

Q ss_pred             CCCCCCccccc-ccCCCCCCceeeccCC----CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCc
Q psy12580         99 ISLNDLSLHTK-ISSGPNGDTWRGRWQK----NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPD  173 (239)
Q Consensus        99 ~~~~~~~~~~~-ig~g~~g~v~~~~~~~----~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~  173 (239)
                      +..+++.+.+. ||+|+||.||+|.++.    ..+|+|++... ......+.|.+|+.+|++++||||++++|++.. +.
T Consensus         5 l~~~~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~-~~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~-~~   82 (285)
T d1u59a_           5 LKRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQG-TEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EA   82 (285)
T ss_dssp             CCGGGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSS-CCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEES-SS
T ss_pred             ecccCeEECCcEEecccCeEEEEEEEecCCCcEEEEEEEEChh-cCHHHHHHHHHHHHHHHhCCCCCEeeEeeeecc-Ce
Confidence            44566777774 9999999999997632    24777887543 344556789999999999999999999999875 46


Q ss_pred             eEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        174 LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ++||||||++|+|.+++.... ..+++..+..++.||++||+|||+.+  ||||||||+|||++
T Consensus        83 ~~lvmE~~~~g~L~~~l~~~~-~~l~~~~~~~i~~qi~~gL~ylH~~~--iiHrDlKp~Nill~  143 (285)
T d1u59a_          83 LMLVMEMAGGGPLHKFLVGKR-EEIPVSNVAELLHQVSMGMKYLEEKN--FVHRDLAARNVLLV  143 (285)
T ss_dssp             EEEEEECCTTEEHHHHHTTCT-TTSCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEEE
T ss_pred             EEEEEEeCCCCcHHHHhhccc-cCCCHHHHHHHHHHHHHHHHHHHhCC--eecCcCchhheeec
Confidence            899999999999999987644 26999999999999999999999999  99999999999997

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=3.6e-33  Score=218.70  Aligned_cols=135  Identities=17%  Similarity=0.208  Sum_probs=120.5

Q ss_pred             CCCCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccC-CchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceE
Q psy12580         99 ISLNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNC-TPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLV  175 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~  175 (239)
                      +..++|++.+.||+|+||.||+|..  .+..+|+|++..... .....+.+.+|+.+|+.++||||+++++++.+.+.++
T Consensus         2 i~l~dy~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~   81 (337)
T d1o6la_           2 VTMNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLC   81 (337)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEE
T ss_pred             CchHhcEEEEEEecCcCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhCCCCCEEEEEeeeccccccc
Confidence            4567899999999999999999986  467788899865422 2233467889999999999999999999999999999


Q ss_pred             EEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        176 VISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       176 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +|||||++|+|.+++....  .+++..++.++.||+.||+|||++|  ||||||||+|||+|
T Consensus        82 iv~ey~~gg~L~~~~~~~~--~~~e~~~~~~~~qil~al~ylH~~~--iiHRDlKP~NILl~  139 (337)
T d1o6la_          82 FVMEYANGGELFFHLSRER--VFTEERARFYGAEIVSALEYLHSRD--VVYRDIKLENLMLD  139 (337)
T ss_dssp             EEEECCTTCBHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHHHTT--CBCCCCCGGGEEEC
T ss_pred             cceeccCCCchhhhhhccc--CCcHHHHHHHHHHHhhhhhhhhhcC--ccccccCHHHeEec
Confidence            9999999999999999866  6999999999999999999999999  99999999999996

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=4.4e-33  Score=217.23  Aligned_cols=130  Identities=18%  Similarity=0.289  Sum_probs=115.9

Q ss_pred             CCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEe
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQ  179 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e  179 (239)
                      +.|.+.+.||+|+||.||+|...  +..+|+|++....   .....+.+|+.+|+.++||||+++++++...+.+|||||
T Consensus         5 ~rY~i~~~lG~G~fg~Vy~~~~~~~~~~~AiK~i~~~~---~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~lvmE   81 (321)
T d1tkia_           5 EKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKG---TDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFE   81 (321)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCT---HHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEEC
T ss_pred             cceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEcCCc---ccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEe
Confidence            56889999999999999999873  5678889886542   233567899999999999999999999999999999999


Q ss_pred             eCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       180 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||++|+|.+++...+. .+++.+++.++.||+.||+|||+.|  |+||||||+|||++
T Consensus        82 ~~~gg~L~~~i~~~~~-~l~e~~~~~i~~qi~~al~yLH~~~--iiHrDlKp~NIll~  136 (321)
T d1tkia_          82 FISGLDIFERINTSAF-ELNEREIVSYVHQVCEALQFLHSHN--IGHFDIRPENIIYQ  136 (321)
T ss_dssp             CCCCCBHHHHHTSSSC-CCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEES
T ss_pred             cCCCCcHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHHcC--CCcccccccceeec
Confidence            9999999999987542 5899999999999999999999999  99999999999985

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=99.98  E-value=1.3e-32  Score=216.88  Aligned_cols=132  Identities=15%  Similarity=0.290  Sum_probs=117.0

Q ss_pred             CCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEE
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVIS  178 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~  178 (239)
                      .+.|++.+.||+|+||.||+|..  .+..+|+|++....  ......+.+|+.+|++++||||+++++++..++.++|||
T Consensus        28 ~d~Y~i~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~--~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivm  105 (352)
T d1koba_          28 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPY--PLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLIL  105 (352)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS--HHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEE
T ss_pred             ccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEECCcc--hhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEE
Confidence            35689999999999999999986  46778889886432  333467889999999999999999999999999999999


Q ss_pred             eeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        179 QYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       179 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |||++|+|.+++.... ..+++..++.++.||+.||+|||+.|  ||||||||+||||+
T Consensus       106 E~~~gg~L~~~~~~~~-~~l~e~~~~~i~~qi~~aL~ylH~~~--iiHRDiKp~NILl~  161 (352)
T d1koba_         106 EFLSGGELFDRIAAED-YKMSEAEVINYMRQACEGLKHMHEHS--IVHLDIKPENIMCE  161 (352)
T ss_dssp             ECCCCCBHHHHTTCTT-CCBCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEES
T ss_pred             EcCCCChHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCC--eeeccccccccccc
Confidence            9999999999887654 25999999999999999999999999  99999999999986

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=2.3e-32  Score=209.88  Aligned_cols=136  Identities=24%  Similarity=0.398  Sum_probs=119.0

Q ss_pred             CCCCCCCcccccccCCCCCCceeeccCCC------ceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCC
Q psy12580         98 GISLNDLSLHTKISSGPNGDTWRGRWQKN------DIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSP  171 (239)
Q Consensus        98 ~~~~~~~~~~~~ig~g~~g~v~~~~~~~~------~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~  171 (239)
                      ++..++|+..+.||+|+||.||+|.+++.      .+|+|.+... ........|.+|+.++++++||||++++|++...
T Consensus         3 ei~~~~~~~~~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~-~~~~~~~~~~~E~~il~~l~H~nIv~~~g~~~~~   81 (283)
T d1mqba_           3 EIHPSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAG-YTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKY   81 (283)
T ss_dssp             BCCTTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTT-CCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSS
T ss_pred             cCCHHHeEeeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECcc-cChHHHHHHHHHHHHHHhcCCCCEeeeeEEEecC
Confidence            46678899999999999999999987432      4677877543 3344556789999999999999999999999999


Q ss_pred             CceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        172 PDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       172 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +..++||||+.+|++.+++..... .+++..+..++.||+.||+|||+.+  |+||||||+|||||
T Consensus        82 ~~~~~v~e~~~~~~l~~~~~~~~~-~~~~~~~~~i~~~i~~gl~~lH~~~--iiHrDlKp~NILl~  144 (283)
T d1mqba_          82 KPMMIITEYMENGALDKFLREKDG-EFSVLQLVGMLRGIAAGMKYLANMN--YVHRDLAARNILVN  144 (283)
T ss_dssp             SSEEEEEECCTTEEHHHHHHHTTT-CSCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEEC
T ss_pred             CceEEEEEecccCcchhhhhcccc-cccHHHHHHHHHHHHHhhhhccccc--cccCccccceEEEC
Confidence            999999999999999998876542 6999999999999999999999999  99999999999997

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=99.97  E-value=1.3e-32  Score=216.73  Aligned_cols=131  Identities=16%  Similarity=0.360  Sum_probs=116.8

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEe
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQ  179 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e  179 (239)
                      ++|++.+.||+|+||.||+|..  .+..+|+|++....  ....+.+.+|+.+|++++||||+++++++...+.++||||
T Consensus        26 ~~Y~i~~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~~--~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmE  103 (350)
T d1koaa2          26 DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPH--ESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYE  103 (350)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECCCS--HHHHHHHHHHHHHHHHTCCTTBCCEEEEEEETTEEEEEEC
T ss_pred             cCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEcccc--hhhHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEE
Confidence            5788999999999999999987  36778889886432  3345678899999999999999999999999999999999


Q ss_pred             eCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       180 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||++|+|.+++....+ .+++..+..++.||+.||+|||+.|  ||||||||+|||++
T Consensus       104 ~~~gg~L~~~l~~~~~-~l~e~~~~~i~~qi~~aL~ylH~~~--iiHrDiKp~NIll~  158 (350)
T d1koaa2         104 FMSGGELFEKVADEHN-KMSEDEAVEYMRQVCKGLCHMHENN--YVHLDLKPENIMFT  158 (350)
T ss_dssp             CCCSCBHHHHHTCTTS-CBCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEES
T ss_pred             cCCCCCHHHHHHhhcC-CCCHHHHHHHHHHHHHHHHHHHhcC--CeeeeechhHeeec
Confidence            9999999999975442 5999999999999999999999999  99999999999984

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.6e-32  Score=214.73  Aligned_cols=139  Identities=22%  Similarity=0.355  Sum_probs=115.5

Q ss_pred             ccCCCCCCCcccccccCCCCCCceeeccCC--C-----ceeeeeeeeccCCchHHHHHHHHHhHhhhc-CCCceeeeeee
Q psy12580         96 HKGISLNDLSLHTKISSGPNGDTWRGRWQK--N-----DIVAKILAVRNCTPRVSRDFNEEFPKLRIF-SHPNVLPVIGC  167 (239)
Q Consensus        96 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~--~-----~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~l~~~  167 (239)
                      .++++.++|++.+.||+|+||.||+|.+.+  +     .+++|.+.... .......+.+|+.++.++ +|||||+++++
T Consensus        31 kwei~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~  109 (325)
T d1rjba_          31 KWEFPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKA-DSSEREALMSELKMMTQLGSHENIVNLLGA  109 (325)
T ss_dssp             GGBCCGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC-------CHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             cccCCHHHeEEeeEEeeCCCeEEEEEEEcCCCcccceeEEEEEEecccc-CHHHHHHHHHHHHHHHHhcCCCcEeEEEEE
Confidence            356778899999999999999999998743  1     35566664432 233346788999999998 89999999999


Q ss_pred             eeCCCceEEEEeeCCCCCHHHHhhcCCC---------------------cccCHHHHHHHHHHHHHHhhhhhcCCCCccc
Q psy12580        168 VNSPPDLVVISQYMAWGSLYALLHEGAG---------------------IVVDFAQALRFAVDVARGMAFLHSLERIIPQ  226 (239)
Q Consensus       168 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~---------------------~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivH  226 (239)
                      +...+.+++|||||++|+|.++++....                     ..+++..++.++.||++||+|||+.+  |||
T Consensus       110 ~~~~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~yLH~~~--IiH  187 (325)
T d1rjba_         110 CTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKS--CVH  187 (325)
T ss_dssp             ECSSSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHTT--EEE
T ss_pred             EeeCCeEEEEEEcCCCCcHHHHHHhccCCCcchhhhhccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCC--eee
Confidence            9999999999999999999999976431                     24889999999999999999999999  999


Q ss_pred             CCCCCccceee
Q psy12580        227 YQLNSRHVMVY  237 (239)
Q Consensus       227 rdikp~Nill~  237 (239)
                      |||||+|||++
T Consensus       188 RDlKp~Nill~  198 (325)
T d1rjba_         188 RDLAARNVLVT  198 (325)
T ss_dssp             TTCSGGGEEEE
T ss_pred             ccCchhccccc
Confidence            99999999996

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.97  E-value=1.6e-32  Score=210.35  Aligned_cols=132  Identities=16%  Similarity=0.254  Sum_probs=116.6

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccC-CchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCC----ce
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNC-TPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP----DL  174 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~----~~  174 (239)
                      ++|++.+.||+|+||.||+|..  .++.+|+|++..... ++.....+.+|+.+++.++||||+++++++...+    .+
T Consensus         7 drY~i~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~~~hpniv~~~~~~~~~~~~~~~~   86 (277)
T d1o6ya_           7 DRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLP   86 (277)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTTTCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEECSSSEEE
T ss_pred             ceeEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhcCCCCCCcccceeeeccCCCceE
Confidence            5588999999999999999986  467788899876543 3444567999999999999999999999987654    48


Q ss_pred             EEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        175 VVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       175 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +|||||+++|+|.+++...+  .+++.+++.++.||+.||+|||+.|  ||||||||+|||++
T Consensus        87 ~lvmE~~~g~~L~~~~~~~~--~l~~~~~~~i~~qi~~al~~lH~~~--iiHrDiKP~NIll~  145 (277)
T d1o6ya_          87 YIVMEYVDGVTLRDIVHTEG--PMTPKRAIEVIADACQALNFSHQNG--IIHRDVKPANIMIS  145 (277)
T ss_dssp             EEEEECCCEEEHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEEE
T ss_pred             EEEEECCCCCEehhhhcccC--CCCHHHHHHHHHHHHHHHHHHHhCC--ccCccccCcccccC
Confidence            99999999999999998766  6999999999999999999999999  99999999999996

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.9e-32  Score=213.09  Aligned_cols=133  Identities=21%  Similarity=0.329  Sum_probs=118.5

Q ss_pred             CCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccC-CchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEE
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNC-TPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVI  177 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv  177 (239)
                      .++|++.+.||+|+||.||+|+.  .+..+|+|++..... .....+.+.+|+.+++.++||||+++++++..++.+++|
T Consensus         3 l~dy~i~~~lG~G~fg~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~iv   82 (316)
T d1fota_           3 LQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMI   82 (316)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEE
T ss_pred             hhHeEEEEEEecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHhccCcChhheeeeEeeCCeeeeE
Confidence            36789999999999999999986  367788899865422 223346788999999999999999999999999999999


Q ss_pred             EeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        178 SQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       178 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||||++|+|.+++....  .+++..++.++.||+.||+|||+.|  ||||||||+||||+
T Consensus        83 mE~~~gg~l~~~~~~~~--~~~~~~~~~~~~qi~~al~~lH~~~--iiHrDiKp~NILl~  138 (316)
T d1fota_          83 MDYIEGGELFSLLRKSQ--RFPNPVAKFYAAEVCLALEYLHSKD--IIYRDLKPENILLD  138 (316)
T ss_dssp             ECCCCSCBHHHHHHHTS--SCCHHHHHHHHHHHHHHHHHHHTTT--EECCCCCGGGEEEC
T ss_pred             eeecCCccccccccccc--cccccHHHHHHHHHHHhhhhhccCc--EEccccCchheeEc
Confidence            99999999999998877  6899999999999999999999999  99999999999997

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3e-32  Score=210.88  Aligned_cols=133  Identities=17%  Similarity=0.321  Sum_probs=112.8

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEe
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQ  179 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e  179 (239)
                      ++|.+.+.||+|+||.||+|..  .+..+|+|++..........+.+.+|+.+|++++||||+++++++..++.+++|||
T Consensus         2 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~Hp~Iv~~~~~~~~~~~~~iv~e   81 (298)
T d1gz8a_           2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFE   81 (298)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEC-------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             CCCEeccEEecCcCeEEEEEEECCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEEeccccccccceeEEEe
Confidence            5788999999999999999987  36778889986654444445678899999999999999999999999999999999


Q ss_pred             eCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       180 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |+.+ ++.+++.......+++..++.++.|++.||+|||+.|  ||||||||+|||++
T Consensus        82 ~~~~-~~~~~~~~~~~~~l~e~~~~~~~~qil~~L~yLH~~~--IiHrDiKpeNIl~~  136 (298)
T d1gz8a_          82 FLHQ-DLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHR--VLHRDLKPQNLLIN  136 (298)
T ss_dssp             CCSE-EHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEEC
T ss_pred             ecCC-chhhhhhhhcccCCCHHHHHHHHHHHHHHHHHhhcCC--EEccccCchheeec
Confidence            9976 6666666554457999999999999999999999999  99999999999996

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.5e-31  Score=204.34  Aligned_cols=137  Identities=22%  Similarity=0.364  Sum_probs=114.9

Q ss_pred             cCCCCCCCcccccccCCCCCCceeeccCC---C--ceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCC
Q psy12580         97 KGISLNDLSLHTKISSGPNGDTWRGRWQK---N--DIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSP  171 (239)
Q Consensus        97 ~~~~~~~~~~~~~ig~g~~g~v~~~~~~~---~--~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~  171 (239)
                      ++++.++|++.+.||+|+||.||+|.+..   .  .+++|.+.. .......+.+.+|+.+|++++||||+++++++.. 
T Consensus         2 ~ei~~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~-~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~~-   79 (273)
T d1mp8a_           2 YEIQRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKN-CTSDSVREKFLQEALTMRQFDHPHIVKLIGVITE-   79 (273)
T ss_dssp             CBCCGGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTT-TTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECS-
T ss_pred             CCcCHHHeEEEEEEeeCCCcEEEEEEEecCCceeEEEEEEEecc-ccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec-
Confidence            45777899999999999999999998742   2  234444432 2234445679999999999999999999999864 


Q ss_pred             CceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceeec
Q psy12580        172 PDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVYI  238 (239)
Q Consensus       172 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~~  238 (239)
                      +..++||||+++|+|.+++....+ .+++..++.++.||++||.|||+.+  ||||||||+||+++-
T Consensus        80 ~~~~iv~E~~~~g~l~~~~~~~~~-~l~~~~~~~~~~qi~~gl~ylH~~~--iiHrDlKp~NIll~~  143 (273)
T d1mp8a_          80 NPVWIIMELCTLGELRSFLQVRKY-SLDLASLILYAYQLSTALAYLESKR--FVHRDIAARNVLVSS  143 (273)
T ss_dssp             SSCEEEEECCTTEEHHHHHHHTTT-TSCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSGGGEEEEE
T ss_pred             CeEEEEEEeccCCcHHhhhhccCC-CCCHHHHHHHHHHHHHHhhhhcccC--eeccccchhheeecC
Confidence            578999999999999998876543 5899999999999999999999999  999999999999973

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.7e-31  Score=203.78  Aligned_cols=135  Identities=27%  Similarity=0.458  Sum_probs=108.8

Q ss_pred             CCCCCCcccccccCCCCCCceeeccCC-----CceeeeeeeeccC-CchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCC
Q psy12580         99 ISLNDLSLHTKISSGPNGDTWRGRWQK-----NDIVAKILAVRNC-TPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP  172 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g~~g~v~~~~~~~-----~~~~vk~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~  172 (239)
                      +..++|++.+.||+|+||.||+|.++.     ..+|+|++..... .....+.|.+|+.+|++++||||++++|++..+ 
T Consensus         5 i~~~d~~~~~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~l~H~nIv~~~g~~~~~-   83 (273)
T d1u46a_           5 IGEKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTP-   83 (273)
T ss_dssp             CCGGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS-
T ss_pred             EchHHeEEEEEEecCCCeEEEEEEEECCCCcEEEEEEEEEChhhcCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEeec-
Confidence            456789999999999999999998632     2467788765433 334457899999999999999999999999764 


Q ss_pred             ceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        173 DLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       173 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ..++||||+++|++.+++....+ .+++..+..++.||+.||.|||+.+  |+||||||+|||++
T Consensus        84 ~~~lv~e~~~~~~l~~~~~~~~~-~l~~~~~~~~~~qi~~gl~ylH~~~--iiHrDikp~NIll~  145 (273)
T d1u46a_          84 PMKMVTELAPLGSLLDRLRKHQG-HFLLGTLSRYAVQVAEGMGYLESKR--FIHRDLAARNLLLA  145 (273)
T ss_dssp             SCEEEEECCTTCBHHHHHHHHGG-GSCHHHHHHHHHHHHHHHHHHHHTT--EECSCCCGGGEEEE
T ss_pred             chheeeeeecCcchhhhhhcccC-CCCHHHHHHHHHHHHHHHHHhhhCC--EeeeeecHHHhccc
Confidence            67899999999999998876542 5999999999999999999999999  99999999999987

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=2e-31  Score=211.05  Aligned_cols=134  Identities=18%  Similarity=0.193  Sum_probs=113.6

Q ss_pred             CCCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCc-hHHHHHH---HHHhHhhhcCCCceeeeeeeeeCCCc
Q psy12580        100 SLNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTP-RVSRDFN---EEFPKLRIFSHPNVLPVIGCVNSPPD  173 (239)
Q Consensus       100 ~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~-~~~~~~~---~e~~~l~~l~h~~iv~l~~~~~~~~~  173 (239)
                      +.++|++.+.||+|+||.||+|..  .+..+|+|++....... .....+.   .++.+++.++||||+++++++...+.
T Consensus         2 slddy~i~~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~~~~   81 (364)
T d1omwa3           2 TMNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDK   81 (364)
T ss_dssp             CSTTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSE
T ss_pred             CHHhCeeeeEEecCCCeEEEEEEECCCCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEEEECCE
Confidence            457899999999999999999987  35778889886532211 1122233   34667777889999999999999999


Q ss_pred             eEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        174 LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +++|||||++|+|.+++....  .+++..++.++.||+.||+|||+.+  ||||||||+|||++
T Consensus        82 ~~ivmE~~~gg~L~~~l~~~~--~~~e~~~~~~~~qi~~aL~ylH~~~--iiHrDlKP~NILl~  141 (364)
T d1omwa3          82 LSFILDLMNGGDLHYHLSQHG--VFSEADMRFYAAEIILGLEHMHNRF--VVYRDLKPANILLD  141 (364)
T ss_dssp             EEEEECCCCSCBHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEEC
T ss_pred             EEEEEEecCCCcHHHHHHhcc--cccHHHHHHHHHHHHHHHHHHHHCC--ccceeeccceeEEc
Confidence            999999999999999998766  6899999999999999999999999  99999999999997

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=99.97  E-value=1.1e-31  Score=206.63  Aligned_cols=132  Identities=14%  Similarity=0.219  Sum_probs=116.1

Q ss_pred             CCCcccccccCCCCCCceeeccC-CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEee
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRWQ-KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQY  180 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~  180 (239)
                      ++|++.+.||+|+||.||+|.++ +..+|+|++..........+.+.+|+.+|++++||||+++++++...+..++++|+
T Consensus         2 ~~Y~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~i~~e~   81 (286)
T d1ob3a_           2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH   81 (286)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred             CCceeccEEecCCCcEEEEEEeCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEeeeeecccCCceeEEEEe
Confidence            46888999999999999999874 57788899866544444457789999999999999999999999999999999999


Q ss_pred             CCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        181 MAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       181 ~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +.++.+..+.....  .+++..+..++.||+.||+|||+.+  ||||||||+|||++
T Consensus        82 ~~~~~~~~~~~~~~--~l~~~~~~~i~~qi~~~L~~LH~~~--IvHrDiKp~NIll~  134 (286)
T d1ob3a_          82 LDQDLKKLLDVCEG--GLESVTAKSFLLQLLNGIAYCHDRR--VLHRDLKPQNLLIN  134 (286)
T ss_dssp             CSEEHHHHHHTSTT--CCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEEC
T ss_pred             ehhhhHHHHHhhcC--CcchhhhHHHHHHHHHHHHHhccCc--EEecCCCCceeeEc
Confidence            98877666665554  6999999999999999999999999  99999999999996

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=4.1e-31  Score=204.66  Aligned_cols=138  Identities=23%  Similarity=0.385  Sum_probs=119.9

Q ss_pred             cCCCCCCCcccccccCCCCCCceeeccCC-------CceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeee
Q psy12580         97 KGISLNDLSLHTKISSGPNGDTWRGRWQK-------NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVN  169 (239)
Q Consensus        97 ~~~~~~~~~~~~~ig~g~~g~v~~~~~~~-------~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~  169 (239)
                      .+++.++|++.+.||+|+||.||+|++++       ..+|+|++... ......+.+.+|+.+++.++||||+++++++.
T Consensus         8 ~e~p~~~~~~~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~-~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~   86 (301)
T d1lufa_           8 LEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEE-ASADMQADFQREAALMAEFDNPNIVKLLGVCA   86 (301)
T ss_dssp             TBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTT-CCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC
T ss_pred             ccCCHHHcEEeEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChh-cChHHHHHHHHHHHHHHhcCCCCcccceeeec
Confidence            45667889999999999999999998643       45778887543 33445678999999999999999999999999


Q ss_pred             CCCceEEEEeeCCCCCHHHHhhcCC----------------------CcccCHHHHHHHHHHHHHHhhhhhcCCCCcccC
Q psy12580        170 SPPDLVVISQYMAWGSLYALLHEGA----------------------GIVVDFAQALRFAVDVARGMAFLHSLERIIPQY  227 (239)
Q Consensus       170 ~~~~~~lv~e~~~~gsL~~~l~~~~----------------------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHr  227 (239)
                      ..+..+++|||+++|+|.+++....                      ...+++..+..++.|++.||+|||+.+  ||||
T Consensus        87 ~~~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH~~~--ivHr  164 (301)
T d1lufa_          87 VGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERK--FVHR  164 (301)
T ss_dssp             SSSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHTT--CCCS
T ss_pred             cCCceEEEEEecCCCcHHHHHHhcCccccccccccccchhhhccccCCCCCCHHHHHHHHHHHHHHhhhcccCC--eEee
Confidence            9999999999999999999997532                      124789999999999999999999999  9999


Q ss_pred             CCCCccceee
Q psy12580        228 QLNSRHVMVY  237 (239)
Q Consensus       228 dikp~Nill~  237 (239)
                      ||||+|||+|
T Consensus       165 DlKp~NILld  174 (301)
T d1lufa_         165 DLATRNCLVG  174 (301)
T ss_dssp             CCSGGGEEEC
T ss_pred             EEcccceEEC
Confidence            9999999997

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.4e-31  Score=210.80  Aligned_cols=133  Identities=17%  Similarity=0.246  Sum_probs=118.4

Q ss_pred             CCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccC-CchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEE
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNC-TPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVI  177 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv  177 (239)
                      .++|++.+.||+|+||.||+|..  .+..+|+|++..... .....+.+.+|+.+|+.++||||+++++++......++|
T Consensus        40 ld~y~i~~~lG~G~fg~Vy~a~~~~~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~v  119 (350)
T d1rdqe_          40 LDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMV  119 (350)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             ccCeEEEEEeecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHHcCCCcEeecccccccccccccc
Confidence            36789999999999999999987  467788898865422 223346788999999999999999999999999999999


Q ss_pred             EeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        178 SQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       178 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |||+.+|+|.+++....  .+++..++.++.||+.||.|||+.+  ||||||||+|||++
T Consensus       120 ~e~~~~g~l~~~l~~~~--~l~e~~~~~i~~qi~~aL~yLH~~~--iiHRDIKP~NILl~  175 (350)
T d1rdqe_         120 MEYVAGGEMFSHLRRIG--RFSEPHARFYAAQIVLTFEYLHSLD--LIYRDLKPENLLID  175 (350)
T ss_dssp             EECCTTCBHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEEC
T ss_pred             cccccccchhhhHhhcC--CCCHHHHHHHHHHHHHHHHHHHhCC--EecCcCCHHHcccC
Confidence            99999999999998766  6999999999999999999999999  99999999999996

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.7e-31  Score=206.35  Aligned_cols=139  Identities=27%  Similarity=0.417  Sum_probs=115.8

Q ss_pred             ccCCCCCCCcccccccCCCCCCceeeccCC--C--ceeeeeeeeccCCchHHHHHHHHHhHhhhc-CCCceeeeeeeeeC
Q psy12580         96 HKGISLNDLSLHTKISSGPNGDTWRGRWQK--N--DIVAKILAVRNCTPRVSRDFNEEFPKLRIF-SHPNVLPVIGCVNS  170 (239)
Q Consensus        96 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~--~--~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~l~~~~~~  170 (239)
                      .+.++.++|++.+.||+|+||.||+|.+++  .  .+++|.+... ......+.+.+|+.+|.++ +||||+++++++..
T Consensus         4 ~~~i~~~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~   82 (309)
T d1fvra_           4 YPVLDWNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEY-ASKDDHRDFAGELEVLCKLGHHPNIINLLGACEH   82 (309)
T ss_dssp             SSBCCGGGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC-------CHHHHHHHHHTTCCCCTTBCCEEEEEEE
T ss_pred             CCccCHHHcEEEEEEeeCCCcEEEEEEECCCCeEEEEEEEEECcc-cChHHHHHHHHHHHHHHhccCCCCEeeEEEEEec
Confidence            345778899999999999999999999843  2  2444554322 2233456799999999998 79999999999999


Q ss_pred             CCceEEEEeeCCCCCHHHHhhcCC--------------CcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCcccee
Q psy12580        171 PPDLVVISQYMAWGSLYALLHEGA--------------GIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV  236 (239)
Q Consensus       171 ~~~~~lv~e~~~~gsL~~~l~~~~--------------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill  236 (239)
                      .+.+++||||+++|+|.++++...              ...+++..+..++.||+.||.|||+.+  ||||||||+|||+
T Consensus        83 ~~~~~iV~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~~lH~~~--iiHrDlkp~NIL~  160 (309)
T d1fvra_          83 RGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQ--FIHRDLAARNILV  160 (309)
T ss_dssp             TTEEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEE
T ss_pred             CCeeEEEEEecCCCcHHHHHhhccccccchhhhccccccCCCCHHHHHHHHHHHHHHHHhhhcCC--ccccccccceEEE
Confidence            999999999999999999997542              246899999999999999999999999  9999999999998


Q ss_pred             e
Q psy12580        237 Y  237 (239)
Q Consensus       237 ~  237 (239)
                      +
T Consensus       161 ~  161 (309)
T d1fvra_         161 G  161 (309)
T ss_dssp             C
T ss_pred             c
Confidence            7

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.9e-31  Score=206.69  Aligned_cols=132  Identities=19%  Similarity=0.276  Sum_probs=114.1

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccC-CchHHHHHHHHHhHhh-hcCCCceeeeeeeeeCCCceEEE
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNC-TPRVSRDFNEEFPKLR-IFSHPNVLPVIGCVNSPPDLVVI  177 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~-~~~~~~~~~~e~~~l~-~l~h~~iv~l~~~~~~~~~~~lv  177 (239)
                      ++|.+.+.||+|+||.||+|..  .+..+|+|++..... .......+..|..++. .++||||+++++++..++.++||
T Consensus         2 ddy~i~~~iG~G~fg~Vy~~~~~~t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~~~hp~Iv~~~~~~~~~~~~yiv   81 (320)
T d1xjda_           2 EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFFV   81 (320)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEE
T ss_pred             CCeEEeeEEecCCCcEEEEEEECCCCCEEEEEEEchhhccChHHHHHHHHHHHHHHHhCCCCcEEEEEEEEccCCceeEE
Confidence            5789999999999999999987  456778899865421 1222345667777665 68999999999999999999999


Q ss_pred             EeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        178 SQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       178 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      |||+++|+|.+++....  .+++..++.++.||+.||+|||+++  ||||||||+|||++
T Consensus        82 mEy~~~g~L~~~i~~~~--~~~e~~~~~~~~qi~~al~ylH~~~--iiHrDikp~NiL~~  137 (320)
T d1xjda_          82 MEYLNGGDLMYHIQSCH--KFDLSRATFYAAEIILGLQFLHSKG--IVYRDLKLDNILLD  137 (320)
T ss_dssp             EECCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTT--CBCCCCCGGGEEEC
T ss_pred             EeecCCCcHHHHhhccC--CCCHHHHHHHHHHHHHHHHHHHhCC--eeeccCcccceeec
Confidence            99999999999998766  6899999999999999999999999  99999999999986

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.5e-31  Score=204.33  Aligned_cols=139  Identities=22%  Similarity=0.363  Sum_probs=119.9

Q ss_pred             ccCCCCCCCcccccccCCCCCCceeeccC-------CCceeeeeeeeccCCchHHHHHHHHHhHhhhc-CCCceeeeeee
Q psy12580         96 HKGISLNDLSLHTKISSGPNGDTWRGRWQ-------KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIF-SHPNVLPVIGC  167 (239)
Q Consensus        96 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~~-------~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~l~~~  167 (239)
                      .++++.++|++.+.||+|+||.||+|.+.       +..+|+|.+.... .......+.+|+.++..+ +||||++++++
T Consensus        17 ~~~~~~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~-~~~~~~~~~~E~~~~~~l~~HpnIv~~~g~   95 (311)
T d1t46a_          17 KWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSA-HLTEREALMSELKVLSYLGNHMNIVNLLGA   95 (311)
T ss_dssp             GGBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTC-CHHHHHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             cccCCHHHeEEeeEEeecCCeEEEEEEEeccccCCCCeEEEEEEECccc-CHHHHHHHHHHHHHHHhccCCCCEEEEEEE
Confidence            45677889999999999999999999752       2357788875433 344556789999999999 69999999999


Q ss_pred             eeCCCceEEEEeeCCCCCHHHHhhcCC----------------CcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCC
Q psy12580        168 VNSPPDLVVISQYMAWGSLYALLHEGA----------------GIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNS  231 (239)
Q Consensus       168 ~~~~~~~~lv~e~~~~gsL~~~l~~~~----------------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp  231 (239)
                      +..++..++|||||++|+|.++++...                ...+++..+..++.||++||+|||+++  ||||||||
T Consensus        96 ~~~~~~~~lvmE~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH~~~--ivHrDLKp  173 (311)
T d1t46a_          96 CTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKN--CIHRDLAA  173 (311)
T ss_dssp             ECSSSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSG
T ss_pred             EeeCCEEEEEEEcCCCCCHHHHHHhccccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhCC--eeeccccc
Confidence            999999999999999999999997643                125889999999999999999999999  99999999


Q ss_pred             ccceee
Q psy12580        232 RHVMVY  237 (239)
Q Consensus       232 ~Nill~  237 (239)
                      +|||++
T Consensus       174 ~NIl~~  179 (311)
T d1t46a_         174 RNILLT  179 (311)
T ss_dssp             GGEEEE
T ss_pred             cccccc
Confidence            999997

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.4e-31  Score=207.57  Aligned_cols=127  Identities=13%  Similarity=0.237  Sum_probs=109.0

Q ss_pred             CCCccc-ccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhc-CCCceeeeeeeeeC----CCc
Q psy12580        102 NDLSLH-TKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIF-SHPNVLPVIGCVNS----PPD  173 (239)
Q Consensus       102 ~~~~~~-~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~l~~~~~~----~~~  173 (239)
                      ++|.+. +.||+|+||.||+|..  .+..+|+|++...       ..+.+|+.++.++ +||||+++++++.+    ...
T Consensus        11 ~~y~i~~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~-------~~~~~E~~~~~~~~~hpnIv~l~~~~~~~~~~~~~   83 (335)
T d2ozaa1          11 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-------PKARREVELHWRASQCPHIVRIVDVYENLYAGRKC   83 (335)
T ss_dssp             GTEEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECS-------HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEE
T ss_pred             cCEEEeeEEeeeccCeEEEEEEECCCCCEEEEEEECCc-------HHHHHHHHHHHHhcCCCCCCeEEEEEeecccCCCE
Confidence            567766 4699999999999986  4577888987532       3466889887655 89999999999864    357


Q ss_pred             eEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        174 LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +|||||||++|+|.+++...+...+++.+++.++.||+.||+|||+.|  |+||||||+|||++
T Consensus        84 ~~ivmEy~~gg~L~~~i~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~--iiHRDiKp~NIll~  145 (335)
T d2ozaa1          84 LLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSIN--IAHRDVKPENLLYT  145 (335)
T ss_dssp             EEEEEECCCSEEHHHHHHSCSCCCEEHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEES
T ss_pred             EEEEEECCCCCcHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHcC--Cccccccccccccc
Confidence            899999999999999998765557999999999999999999999999  99999999999986

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.9e-30  Score=200.58  Aligned_cols=138  Identities=22%  Similarity=0.321  Sum_probs=114.1

Q ss_pred             cCCCCCCCcccccccCCCCCCceeeccCC---------CceeeeeeeeccCCchHHHHHHHHHhHhhhc-CCCceeeeee
Q psy12580         97 KGISLNDLSLHTKISSGPNGDTWRGRWQK---------NDIVAKILAVRNCTPRVSRDFNEEFPKLRIF-SHPNVLPVIG  166 (239)
Q Consensus        97 ~~~~~~~~~~~~~ig~g~~g~v~~~~~~~---------~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~l~~  166 (239)
                      +.++.++|.+.+.||+|+||.||+|+..+         ..+|+|++... ........+.+|...+.++ +||||+++++
T Consensus         8 ~~i~~~~~~l~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~-~~~~~~~~~~~e~~~l~~~~~HpnIv~~~~   86 (299)
T d1fgka_           8 WELPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSD-ATEKDLSDLISEMEMMKMIGKHKNIINLLG   86 (299)
T ss_dssp             TBCCGGGEEEEEECC-----CEEEEEEECC----CCCEEEEEEECCCTT-CCHHHHHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred             CcccHHHeEEeeEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECcc-cChHHHHHHHHHHHHHHHhcCCCeEEeccc
Confidence            56778899999999999999999998632         24677777543 3344457788899999888 7999999999


Q ss_pred             eeeCCCceEEEEeeCCCCCHHHHhhcCC--------------CcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCc
Q psy12580        167 CVNSPPDLVVISQYMAWGSLYALLHEGA--------------GIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSR  232 (239)
Q Consensus       167 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~--------------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~  232 (239)
                      ++..++..++||||+++|+|.+++....              ...+++.+++.++.||+.||+|||+.+  ||||||||+
T Consensus        87 ~~~~~~~~~~v~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~ylH~~~--ivHrDiKp~  164 (299)
T d1fgka_          87 ACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKK--CIHRDLAAR  164 (299)
T ss_dssp             EECSSSSCEEEECCCTTCBHHHHHHTTSCC------------CCCCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSGG
T ss_pred             ccccCCeEEEEEEccCCCcHHHHHHhhcCCccccccccccCccccCCHHHHHHHHHHHHHHHHHhhhCC--EEeeeeccc
Confidence            9999999999999999999999997543              235899999999999999999999999  999999999


Q ss_pred             cceee
Q psy12580        233 HVMVY  237 (239)
Q Consensus       233 Nill~  237 (239)
                      |||++
T Consensus       165 NiLl~  169 (299)
T d1fgka_         165 NVLVT  169 (299)
T ss_dssp             GEEEC
T ss_pred             ceeec
Confidence            99986

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.7e-30  Score=202.47  Aligned_cols=134  Identities=21%  Similarity=0.402  Sum_probs=111.8

Q ss_pred             CCCCCCcccccccCCCCCCceeeccC--CC----ceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCC
Q psy12580         99 ISLNDLSLHTKISSGPNGDTWRGRWQ--KN----DIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP  172 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g~~g~v~~~~~~--~~----~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~  172 (239)
                      +...+|++.+.||+|+||.||+|.+.  ++    .+++|.+... ......+.+.+|+.++++++||||++++|++..+ 
T Consensus         6 ~k~~dy~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~-   83 (317)
T d1xkka_           6 LKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREA-TSPKANKEILDEAYVMASVDNPHVCRLLGICLTS-   83 (317)
T ss_dssp             CCTTTEEEEEEEEECSSEEEEEEEECC----CCEEEEEEEECC-----CTHHHHHHHHHHHHHCCCTTBCCEEEEEESS-
T ss_pred             CCHHHCEEeeEEecCCCeEEEEEEEcCCCCEEEEEEEEEEeccc-cCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecC-
Confidence            34567999999999999999999874  23    3556665432 2334457899999999999999999999999875 


Q ss_pred             ceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        173 DLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       173 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ..++++|++.+|+|.+++.... ..+++..++.++.||++||+|||+.+  ||||||||+|||+|
T Consensus        84 ~~~~v~e~~~~~~l~~~~~~~~-~~~~~~~~~~i~~qi~~gl~yLH~~~--iiHrDlKp~NIll~  145 (317)
T d1xkka_          84 TVQLITQLMPFGCLLDYVREHK-DNIGSQYLLNWCVQIAKGMNYLEDRR--LVHRDLAARNVLVK  145 (317)
T ss_dssp             SEEEEEECCTTCBHHHHHHHTS-SSCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEEE
T ss_pred             CeeEEEEeccCCcccccccccc-cCCCHHHHHHHHHHHHHHHHHHHHcC--cccCcchhhcceeC
Confidence            5788899999999999988764 36999999999999999999999999  99999999999997

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.2e-31  Score=204.55  Aligned_cols=127  Identities=13%  Similarity=0.248  Sum_probs=106.1

Q ss_pred             cccccCCCCCCceeecc--CCCceeeeeeeeccCCc---hHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEeeC
Q psy12580        107 HTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTP---RVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYM  181 (239)
Q Consensus       107 ~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~---~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~  181 (239)
                      .+.||+|+||.||+|..  .+..+|+|++.......   ...+.+.+|+.+++.++||||+++++++..++.+++||||+
T Consensus         3 l~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~~~~~~~~~ivmE~~   82 (299)
T d1ua2a_           3 LDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDFM   82 (299)
T ss_dssp             EEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCEEEEECC
T ss_pred             ceEeccCcCeEEEEEEECCCCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCCCCCEeEEEeeeccCCceeehhhhh
Confidence            46899999999999987  35678889886543221   12356889999999999999999999999999999999999


Q ss_pred             CCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        182 AWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       182 ~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .++++..+.....  .+++..+..++.||+.||+|||+.|  |+||||||+|||++
T Consensus        83 ~~~~~~~~~~~~~--~l~~~~~~~~~~qil~aL~~lH~~~--iiHrDiKp~NIli~  134 (299)
T d1ua2a_          83 ETDLEVIIKDNSL--VLTPSHIKAYMLMTLQGLEYLHQHW--ILHRDLKPNNLLLD  134 (299)
T ss_dssp             SEEHHHHHTTCCS--SCCSSHHHHHHHHHHHHHHHHHHTT--CCCCCCCGGGEEEC
T ss_pred             cchHHhhhhhccc--CCCHHHHHHHHHHHHHHHHHhhccc--eecccCCcceEEec
Confidence            9887776665544  6899999999999999999999999  99999999999996

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.6e-30  Score=200.64  Aligned_cols=132  Identities=14%  Similarity=0.217  Sum_probs=119.6

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCCceEEEEe
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQ  179 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e  179 (239)
                      +.|++.+.||+|+||+||+|..  .+..+|+|++............+.+|+.+|+.++||||+++++++..+...++|+|
T Consensus         2 ~ry~~i~~LG~G~fg~V~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~~~~iv~~   81 (292)
T d1unla_           2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE   81 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             CCCEeeeEEecCcCeEEEEEEECCCCcEEEEEEEehhhCChHHHHHHHHHHHHHHhcCcCCEEeeccccccccceeEEee
Confidence            4688899999999999999987  45667889987666556667889999999999999999999999999999999999


Q ss_pred             eCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       180 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ++.+++|..++....  .+++..+..++.|++.||+|||+.+  ||||||||+|||++
T Consensus        82 ~~~~~~l~~~~~~~~--~~~~~~~~~~~~q~~~aL~~lH~~~--IvHrDiKP~NIli~  135 (292)
T d1unla_          82 FCDQDLKKYFDSCNG--DLDPEIVKSFLFQLLKGLGFCHSRN--VLHRDLKPQNLLIN  135 (292)
T ss_dssp             CCSEEHHHHHHHTTT--CCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEEC
T ss_pred             ecccccccccccccc--ccchhHHHHHHHHHHHHHHHhhcCC--EeeecccCcccccc
Confidence            999999988887765  6899999999999999999999999  99999999999997

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=9.1e-31  Score=203.19  Aligned_cols=140  Identities=19%  Similarity=0.319  Sum_probs=121.2

Q ss_pred             cccCCCCCCCcccccccCCCCCCceeeccC-------CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeee
Q psy12580         95 RHKGISLNDLSLHTKISSGPNGDTWRGRWQ-------KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGC  167 (239)
Q Consensus        95 ~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~-------~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~  167 (239)
                      ..++++.+++.+.+.||+|+||.||+|.++       +..+|+|++... ........+.+|+.++++++||||++++++
T Consensus        13 ~~~ei~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~-~~~~~~~~~~~E~~il~~l~h~nIv~~~~~   91 (308)
T d1p4oa_          13 DEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEA-ASMRERIEFLNEASVMKEFNCHHVVRLLGV   91 (308)
T ss_dssp             CTTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTT-SCHHHHHHHHHHHHHGGGCCCTTBCCEEEE
T ss_pred             cceeecHHHeEEeeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECcc-cChHHHHHHHHHHHHHHHcCCCCEeeeeeE
Confidence            356788899999999999999999999874       246788888643 334455678999999999999999999999


Q ss_pred             eeCCCceEEEEeeCCCCCHHHHhhcCC--------CcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        168 VNSPPDLVVISQYMAWGSLYALLHEGA--------GIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       168 ~~~~~~~~lv~e~~~~gsL~~~l~~~~--------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +...+..++||||+++|+|.+++....        ...+++..+..++.|+++||.|||+.+  |+||||||+|||+|
T Consensus        92 ~~~~~~~~lv~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~~LH~~~--ivHrDlk~~NiLld  167 (308)
T d1p4oa_          92 VSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANK--FVHRDLAARNCMVA  167 (308)
T ss_dssp             ECSSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHTT--CBCSCCSGGGEEEC
T ss_pred             EecCCceeEEEeecCCCCHHHHHHhcccccccccccCCCCHHHHHHHHHHHHHHHHHHhhCC--eeeceEcCCceeec
Confidence            999999999999999999999987421        124688999999999999999999999  99999999999997

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.9e-30  Score=199.78  Aligned_cols=130  Identities=28%  Similarity=0.502  Sum_probs=107.7

Q ss_pred             CCCcccccccCCCCCCceeeccCCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCC----ceEEE
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP----DLVVI  177 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~----~~~lv  177 (239)
                      ++|.+.+.||+|+||.||+|++++..+|+|++....   ........|+..+..++||||+++++++...+    .+++|
T Consensus         3 ~~~~l~~~iG~G~fg~Vy~~~~~g~~vAvK~~~~~~---~~~~~~e~ei~~~~~~~HpnIv~~~~~~~~~~~~~~~~~lv   79 (303)
T d1vjya_           3 RTIVLQESIGKGRFGEVWRGKWRGEEVAVKIFSSRE---ERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLV   79 (303)
T ss_dssp             GGEEEEEEEECCSSSEEEEEEETTEEEEEEEECGGG---HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEE
T ss_pred             cEEEEEEEEeeCCCeEEEEEEECCEEEEEEEECccc---hhHHHHHHHHHHHhhCCCCcCcceEEEEEeCCCcceEEEEE
Confidence            457788899999999999999999999999885432   11222334555666789999999999997543    68999


Q ss_pred             EeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcC------CCCcccCCCCCccceee
Q psy12580        178 SQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSL------ERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       178 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~------~~~ivHrdikp~Nill~  237 (239)
                      |||+++|+|.+++++..   +++..+..++.|++.||.|||+.      .+.||||||||+|||||
T Consensus        80 ~Ey~~~g~L~~~l~~~~---l~~~~~~~~~~~ia~gl~~lH~~~~~~~~~~~IvHrDlKp~NILl~  142 (303)
T d1vjya_          80 SDYHEHGSLFDYLNRYT---VTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVK  142 (303)
T ss_dssp             EECCTTCBHHHHHHHCC---BCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCCGGGEEEC
T ss_pred             EecccCCCHHHHHhcCC---CCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCeeccccCccceEEc
Confidence            99999999999998754   89999999999999999999974      12299999999999996

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=6.3e-30  Score=198.43  Aligned_cols=128  Identities=25%  Similarity=0.347  Sum_probs=109.0

Q ss_pred             ccccccCCCCCCceeeccCC---C--ceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeC-CCceEEEEe
Q psy12580        106 LHTKISSGPNGDTWRGRWQK---N--DIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNS-PPDLVVISQ  179 (239)
Q Consensus       106 ~~~~ig~g~~g~v~~~~~~~---~--~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~-~~~~~lv~e  179 (239)
                      +.++||+|+||+||+|.+..   +  .+++|.+.. .......+.|.+|+.+|++++||||++++|++.. ++..++|||
T Consensus        31 ~~~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~-~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~E  109 (311)
T d1r0pa_          31 FNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNR-ITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLP  109 (311)
T ss_dssp             EEEEEEEETTEEEEEEEECC----CEEEEEEEECC-CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEETTTEEEEEEE
T ss_pred             cceEEeecCCeEEEEEEEECCCCEEEEEEEEEECc-ccCHHHHHHHHHHHHHHHhCCCCCEeEEeEEEEecCCceEEEEE
Confidence            46789999999999998733   2  356677643 3345556789999999999999999999999865 457899999


Q ss_pred             eCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       180 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||++|+|.+++.... ..+++..+..++.|++.||.|||+.+  |+||||||+|||||
T Consensus       110 ~~~~g~l~~~~~~~~-~~~~~~~~~~i~~qia~gL~~lH~~~--iiHrDLK~~NILl~  164 (311)
T d1r0pa_         110 YMKHGDLRNFIRNET-HNPTVKDLIGFGLQVAKGMKFLASKK--FVHRDLAARNCMLD  164 (311)
T ss_dssp             CCTTCBHHHHHHCTT-CCCBHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSGGGEEEC
T ss_pred             EeecCchhhhhcccc-ccchHHHHHHHHHHHHHhhhhhcccC--cccCCccHHhEeEC
Confidence            999999999988655 35788999999999999999999999  99999999999997

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5.5e-30  Score=198.20  Aligned_cols=138  Identities=22%  Similarity=0.341  Sum_probs=112.5

Q ss_pred             cCCCCCCCcccccccCCCCCCceeeccCC-------CceeeeeeeeccCCchHHHHHHHHHhHhhhc-CCCceeeeeeee
Q psy12580         97 KGISLNDLSLHTKISSGPNGDTWRGRWQK-------NDIVAKILAVRNCTPRVSRDFNEEFPKLRIF-SHPNVLPVIGCV  168 (239)
Q Consensus        97 ~~~~~~~~~~~~~ig~g~~g~v~~~~~~~-------~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~l~~~~  168 (239)
                      ++++.++|++.+.||+|+||.||+|.+.+       +.+|+|.+... ......+.+..|...+.++ +|+||+.+++++
T Consensus         8 wei~~~~y~~~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~-~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~   86 (299)
T d1ywna1           8 WEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEG-ATHSEHRALMSELKILIHIGHHLNVVNLLGAC   86 (299)
T ss_dssp             HBCCGGGEEEEEEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC-----CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             ccccHHHEEEeeEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEccc-cCcHHHHHHHHHHHHHHhhcCCCeEEEeeeee
Confidence            45777889999999999999999998632       35677877543 2344456778888888877 688999999988


Q ss_pred             eCC-CceEEEEeeCCCCCHHHHhhcCC--------------CcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCcc
Q psy12580        169 NSP-PDLVVISQYMAWGSLYALLHEGA--------------GIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRH  233 (239)
Q Consensus       169 ~~~-~~~~lv~e~~~~gsL~~~l~~~~--------------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~N  233 (239)
                      ... ..+++|||||++|+|.++++...              ...+++..+..++.||++||.|||+.+  ||||||||+|
T Consensus        87 ~~~~~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~~--ivHrDlKp~N  164 (299)
T d1ywna1          87 TKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRK--CIHRDLAARN  164 (299)
T ss_dssp             CSTTSCCEEEEECCTTCBHHHHHHHTGGGBCC-----------CBCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGG
T ss_pred             ccCCCeEEEEEEecCCCcHHHHHHhccccccccccchhhhhcccCCHHHHHHHHHHHHHHHHHHHhCC--CcCCcCCccc
Confidence            655 47899999999999999997542              124889999999999999999999999  9999999999


Q ss_pred             ceee
Q psy12580        234 VMVY  237 (239)
Q Consensus       234 ill~  237 (239)
                      ||||
T Consensus       165 ILl~  168 (299)
T d1ywna1         165 ILLS  168 (299)
T ss_dssp             EEEC
T ss_pred             eeEC
Confidence            9997

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=6.4e-30  Score=201.73  Aligned_cols=131  Identities=15%  Similarity=0.177  Sum_probs=109.0

Q ss_pred             CCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCC------
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP------  172 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~------  172 (239)
                      .+.|.+.+.||+|+||.||+|..  .+..+|+|++..........+.+.+|+.+|+.++||||+++++++...+      
T Consensus        17 ~~~Y~~i~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~hpniv~l~~~~~~~~~~~~~~   96 (346)
T d1cm8a_          17 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT   96 (346)
T ss_dssp             BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred             CCcEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEchhhcChHHHHHHHHHHHHHHhcCCCCeeEEEEEeccCccccccc
Confidence            36788999999999999999986  3677888998766555566678899999999999999999999997654      


Q ss_pred             ceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        173 DLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       173 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .+++||||+ +++|..+++..   .+++..++.++.||+.||+|||+.|  ||||||||+|||++
T Consensus        97 ~~~lv~e~~-~~~l~~~~~~~---~l~~~~~~~~~~qi~~aL~~LH~~~--IiHrDiKp~NIL~~  155 (346)
T d1cm8a_          97 DFYLVMPFM-GTDLGKLMKHE---KLGEDRIQFLVYQMLKGLRYIHAAG--IIHRDLKPGNLAVN  155 (346)
T ss_dssp             CCEEEEECC-SEEHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEEC
T ss_pred             eEEEEEecc-cccHHHHHHhc---cccHHHHHHHHHHHHHHHHHHHhCC--CcccccCcchhhcc
Confidence            579999999 55888887764   4999999999999999999999999  99999999999996

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=6.7e-30  Score=201.85  Aligned_cols=131  Identities=15%  Similarity=0.166  Sum_probs=114.1

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCC-----ce
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP-----DL  174 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~-----~~  174 (239)
                      +.|++.+.||+|+||.||+|..  .+..+|+|++.....+....+.+.+|+.+|+.++||||+++++++....     ..
T Consensus        18 ~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~h~~iv~~~~~~~~~~~~~~~~~   97 (348)
T d2gfsa1          18 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFND   97 (348)
T ss_dssp             TTEEEEEECGGGTTSSEEEEEETTTTEEEEEEECSCTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSTTTCCC
T ss_pred             CCeEEEEEEecCCCeEEEEEEECCCCCEEEEEEECchhcChHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeccccccCce
Confidence            5688999999999999999986  4677888998766655666678899999999999999999999986432     34


Q ss_pred             EEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        175 VVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       175 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ++++|++.+|+|.+++..+   .+++..++.++.||+.||+|||+.|  |+||||||+|||++
T Consensus        98 ~~i~~~~~gg~L~~~~~~~---~l~e~~~~~i~~qil~aL~~LH~~g--iiHrDiKp~NILi~  155 (348)
T d2gfsa1          98 VYLVTHLMGADLNNIVKCQ---KLTDDHVQFLIYQILRGLKYIHSAD--IIHRDLKPSNLAVN  155 (348)
T ss_dssp             CEEEEECCSEEHHHHHTTC---CCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCGGGEEEC
T ss_pred             EEEEEeecCCchhhhcccc---cccHHHHHHHHHHHHHHHHHHHhCC--CcccccCCcccccc
Confidence            6667778899999999764   4999999999999999999999999  99999999999997

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.4e-30  Score=198.79  Aligned_cols=132  Identities=14%  Similarity=0.201  Sum_probs=113.7

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCc----hHHHHHHHHHhHhhhcC--CCceeeeeeeeeCCCc
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTP----RVSRDFNEEFPKLRIFS--HPNVLPVIGCVNSPPD  173 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~----~~~~~~~~e~~~l~~l~--h~~iv~l~~~~~~~~~  173 (239)
                      ++|++.+.||+|+||.||+|..  .+..+|+|++.......    .....+.+|+.++++++  ||||+++++++..++.
T Consensus         4 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~nIv~~~~~~~~~~~   83 (273)
T d1xwsa_           4 SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDS   83 (273)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSSE
T ss_pred             CeEEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCCccEEEEEEeeCCe
Confidence            5688999999999999999987  35778889886543321    11234678999999986  8999999999999999


Q ss_pred             eEEEEeeCCC-CCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        174 LVVISQYMAW-GSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 ~~lv~e~~~~-gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .++||||+.+ +++.+++....  .+++..++.++.|++.||+|||+.+  ||||||||+|||++
T Consensus        84 ~~lv~e~~~~~~~l~~~~~~~~--~l~e~~~~~~~~qi~~al~~lH~~~--iiHrDiKp~NIll~  144 (273)
T d1xwsa_          84 FVLILERPEPVQDLFDFITERG--ALQEELARSFFWQVLEAVRHCHNCG--VLHRDIKDENILID  144 (273)
T ss_dssp             EEEEEECCSSEEEHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEEE
T ss_pred             EEEEEEeccCcchHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHHCC--CccccCcccceEEe
Confidence            9999999975 68888888765  6999999999999999999999999  99999999999996

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.1e-29  Score=198.48  Aligned_cols=130  Identities=17%  Similarity=0.243  Sum_probs=107.0

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCCC----ceE
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP----DLV  175 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~----~~~  175 (239)
                      +.|.+.+.||+|+||.||+|..  .+..+|+|++.... .....+.+.+|+.+|+.++||||+++++++....    ..+
T Consensus         8 ~rY~~~~~LG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~-~~~~~~~~~~Ei~il~~l~hp~iv~~~~~~~~~~~~~~~~~   86 (345)
T d1pmea_           8 PRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFE-HQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDV   86 (345)
T ss_dssp             TTEEEEEECC---CCCEEEEEETTTCSEEEEEEECCTT-CHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCE
T ss_pred             CCeEEEEEEeeccCeEEEEEEECCCCcEEEEEEEehhc-ChHHHHHHHHHHHHHHHcCCCCCCcEEEEEeeccccccceE
Confidence            3588999999999999999976  46778889886433 3445567889999999999999999999986653    234


Q ss_pred             EEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        176 VISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       176 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ++++++.+|+|.+++....   +++..++.++.|++.||+|||+.|  ||||||||+|||++
T Consensus        87 ~l~~~~~~g~L~~~l~~~~---l~~~~i~~i~~qil~al~yLH~~~--iiHRDIKp~NILl~  143 (345)
T d1pmea_          87 YLVTHLMGADLYKLLKTQH---LSNDHICYFLYQILRGLKYIHSAN--VLHRDLKPSNLLLN  143 (345)
T ss_dssp             EEEEECCCEEHHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEEC
T ss_pred             EEEEeecCCchhhhhhcCC---CCHHHHHHHHHHHHHHHHHHHHCC--CcCCCCCcceEEEC
Confidence            4455666889999998754   899999999999999999999999  99999999999996

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=99.96  E-value=1.8e-29  Score=197.74  Aligned_cols=125  Identities=16%  Similarity=0.284  Sum_probs=108.7

Q ss_pred             CCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcC-CCceeeeeeeeeCC--CceE
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFS-HPNVLPVIGCVNSP--PDLV  175 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~-h~~iv~l~~~~~~~--~~~~  175 (239)
                      .++|++.+.||+|+||.||+|+.  .+..+|+|++...     ..+.+.+|+.+|+.++ ||||+++++++...  ..++
T Consensus        34 ~d~y~i~~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~~-----~~~~~~~Ei~il~~l~~hpnIv~~~~~~~~~~~~~~~  108 (328)
T d3bqca1          34 QDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPV-----KKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPA  108 (328)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSS-----CHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCSEE
T ss_pred             CcCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEECHH-----HHHHHHHHHHHHHhccCCCCCcEEEEEEEecCCCcee
Confidence            46799999999999999999986  3567888987532     2356889999999995 99999999998744  4799


Q ss_pred             EEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        176 VISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       176 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +|||||++|+|.++.+     .+++..++.++.||+.||+|||++|  ||||||||+|||++
T Consensus       109 ~v~e~~~~~~L~~~~~-----~l~e~~i~~i~~qil~aL~~LH~~g--IvHrDiKp~NILi~  163 (328)
T d3bqca1         109 LVFEHVNNTDFKQLYQ-----TLTDYDIRFYMYEILKALDYCHSMG--IMHRDVKPHNVMID  163 (328)
T ss_dssp             EEEECCCSCBGGGTTT-----SCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEEE
T ss_pred             EEEeecCCCcHHHHhc-----CCCHHHHHHHHHHHHHHHHHHhhcc--cccccccccceEEc
Confidence            9999999999876642     5899999999999999999999999  99999999999996

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.9e-29  Score=195.82  Aligned_cols=133  Identities=14%  Similarity=0.230  Sum_probs=109.7

Q ss_pred             CCCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeC--------
Q psy12580        101 LNDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNS--------  170 (239)
Q Consensus       101 ~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~--------  170 (239)
                      .+.|++.+.||+|+||.||+|.+  .+..+|+|++............+.+|+.+|+.++||||+++++++..        
T Consensus         9 ~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~nii~~~~~~~~~~~~~~~~   88 (318)
T d3blha1           9 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC   88 (318)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC----CTTSSCHHHHHHHHHHHHCCCTTBCCEEEEEEC--------
T ss_pred             cCCEEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHHhcCCCccceEeeeeccccccccc
Confidence            36788999999999999999987  45678889886665555455678899999999999999999998855        


Q ss_pred             CCceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        171 PPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       171 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      .+.+++||||++++.+..+.....  .+++..++.++.|+++||.|||+.|  ||||||||+|||++
T Consensus        89 ~~~~~iv~e~~~~~~~~~~~~~~~--~~~~~~~~~i~~qil~~l~~lH~~~--ivHrDlKp~NILl~  151 (318)
T d3blha1          89 KGSIYLVFDFCEHDLAGLLSNVLV--KFTLSEIKRVMQMLLNGLYYIHRNK--ILHRDMKAANVLIT  151 (318)
T ss_dssp             --CEEEEEECCCEEHHHHHTCTTC--CCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEEC
T ss_pred             CceEEEEEeccCCCccchhhhccc--ccccHHHHHHHHHHHHHHHHhccCC--EEecCcCchheeec
Confidence            346899999998876655544444  6899999999999999999999999  99999999999996

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.5e-28  Score=194.35  Aligned_cols=129  Identities=16%  Similarity=0.219  Sum_probs=109.7

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCC------Cc
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSP------PD  173 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~------~~  173 (239)
                      +.|++.+.||+|+||+||+|.+  .+..+|+|++..........+.+.+|+.+++.++||||+++++++...      ..
T Consensus        17 ~~Y~i~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~f~~~~~~~~~~~   96 (355)
T d2b1pa1          17 KRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQD   96 (355)
T ss_dssp             TTEEEEEECSCC--CEEEEEEETTTTEEEEEEEEESTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCCE
T ss_pred             CCeEEEEEeecCcCeEEEEEEECCCCCEEEEEEEChhhcCHHHHHHHHHHHHHHHhcCCCCeeEEEEEEecccccccCce
Confidence            5688999999999999999987  367888899976655566667789999999999999999999998543      57


Q ss_pred             eEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        174 LVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       174 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +|+|||||.+ ++.+.+..    .+++..++.++.|++.||+|||+.|  |+||||||+|||++
T Consensus        97 ~~iv~Ey~~~-~l~~~~~~----~~~~~~i~~~~~qil~gl~~LH~~g--iiHrDlKP~Nil~~  153 (355)
T d2b1pa1          97 VYLVMELMDA-NLCQVIQM----ELDHERMSYLLYQMLCGIKHLHSAG--IIHRDLKPSNIVVK  153 (355)
T ss_dssp             EEEEEECCSE-EHHHHHTS----CCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGEEEC
T ss_pred             eEEEEeccch-HHHHhhhc----CCCHHHHHHHHHHHHHHHHHhhhcc--cccccCCccccccc
Confidence            8999999976 55555533    5899999999999999999999999  99999999999986

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.8e-29  Score=196.77  Aligned_cols=135  Identities=14%  Similarity=0.236  Sum_probs=117.2

Q ss_pred             CCCCCCcccccccCCCCCCceeecc-----CCCceeeeeeeeccC--CchHHHHHHHHHhHhhhcCC-CceeeeeeeeeC
Q psy12580         99 ISLNDLSLHTKISSGPNGDTWRGRW-----QKNDIVAKILAVRNC--TPRVSRDFNEEFPKLRIFSH-PNVLPVIGCVNS  170 (239)
Q Consensus        99 ~~~~~~~~~~~ig~g~~g~v~~~~~-----~~~~~~vk~~~~~~~--~~~~~~~~~~e~~~l~~l~h-~~iv~l~~~~~~  170 (239)
                      +..++|++.+.||+|+||.||+|..     .+..+|+|.+.....  .....+.+.+|+.++++++| |||+++++++..
T Consensus        21 ~~l~~y~~~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pnIv~~~~~~~~  100 (322)
T d1vzoa_          21 VGIENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQT  100 (322)
T ss_dssp             CCGGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEE
T ss_pred             cchhceEEEEEEecCCCeEEEEEEECccCCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhccCCCeEEEeeeeecc
Confidence            4457899999999999999999964     346688898865432  12233568899999999976 899999999999


Q ss_pred             CCceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        171 PPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       171 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ...++++|||+.+|+|.+++....  .+++..+..++.|++.||+|||+.+  ||||||||+|||+|
T Consensus       101 ~~~~~~v~e~~~~~~L~~~i~~~~--~~~e~~~~~~~~Qi~~al~~lH~~~--ivHrDiKp~Nill~  163 (322)
T d1vzoa_         101 ETKLHLILDYINGGELFTHLSQRE--RFTEHEVQIYVGEIVLALEHLHKLG--IIYRDIKLENILLD  163 (322)
T ss_dssp             TTEEEEEECCCCSCBHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCGGGEEEC
T ss_pred             CCceeeeeecccccHHHHHHHhcc--cccHHHHHHHHHHHHHHHHHhhcCC--EEeccCCccceeec
Confidence            999999999999999999998876  6789999999999999999999999  99999999999997

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=6.5e-29  Score=196.09  Aligned_cols=126  Identities=15%  Similarity=0.205  Sum_probs=102.5

Q ss_pred             CCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCceeeeeeeeeCC------Cce
Q psy12580        103 DLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSP------PDL  174 (239)
Q Consensus       103 ~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~------~~~  174 (239)
                      +|...++||+|+||+||+|..  .+..+|+|++.....      ...+|+.+|++++||||+++++++...      .++
T Consensus        21 ~Y~~~k~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~------~~~~Ei~il~~l~h~niv~~~~~~~~~~~~~~~~~~   94 (350)
T d1q5ka_          21 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR------FKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYL   94 (350)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSS------SCCHHHHHHHHCCCTTBCCEEEEEEEC--CCSCCEE
T ss_pred             CcEeeeEEeeCcCeEEEEEEECCCCCEEEEEEECccch------HHHHHHHHHHhcCCCCCCcEEEEEEecCccCCceEE
Confidence            567788999999999999997  356788898865432      234799999999999999999988432      257


Q ss_pred             EEEEeeCCCCCHHHHhhc--CCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        175 VVISQYMAWGSLYALLHE--GAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       175 ~lv~e~~~~gsL~~~l~~--~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      +||||||+++. .+.+..  .....+++..++.++.||+.||+|||+.|  |+||||||+|||++
T Consensus        95 ~lv~Ey~~~~~-~~~l~~~~~~~~~l~~~~~~~i~~qil~aL~yLH~~~--IiHrDiKp~NILl~  156 (350)
T d1q5ka_          95 NLVLDYVPETV-YRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFG--ICHRDIKPQNLLLD  156 (350)
T ss_dssp             EEEEECCSEEH-HHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTT--EECCCCCGGGEEEC
T ss_pred             EEEEeccCCcc-HHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHhcC--CcccCCCcceEEEe
Confidence            99999998754 434321  12236999999999999999999999999  99999999999996

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4.8e-29  Score=193.48  Aligned_cols=133  Identities=18%  Similarity=0.229  Sum_probs=106.6

Q ss_pred             CCCcccccccCCCCCCceeeccC--CC-ceeeeeeeeccCCchHHHHHHHHHhHhhhc---CCCceeeeeeeeeC-----
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRWQ--KN-DIVAKILAVRNCTPRVSRDFNEEFPKLRIF---SHPNVLPVIGCVNS-----  170 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~~--~~-~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l---~h~~iv~l~~~~~~-----  170 (239)
                      ++|++.+.||+|+||.||+|...  ++ .+|+|++............+.+|+.+++.+   +||||+++++++..     
T Consensus         7 ~~Y~i~~~LG~G~fg~V~~a~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~~~~~   86 (305)
T d1blxa_           7 QQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDR   86 (305)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEECSS
T ss_pred             CCEEEEEEEecccCeEEEEEEEECCCCEEEEEEEEehhhccchHHHHHHHHHHHHHHHhhcCCCCcceeeeeeccccccc
Confidence            67899999999999999999862  23 467898876544433334566777777665   79999999998853     


Q ss_pred             CCceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        171 PPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       171 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ...++++|||++++++...... ....+++..++.++.|++.||+|||+.+  ||||||||+|||++
T Consensus        87 ~~~~~~~~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~qi~~aL~yLH~~~--ivHrDiKp~NILi~  150 (305)
T d1blxa_          87 ETKLTLVFEHVDQDLTTYLDKV-PEPGVPTETIKDMMFQLLRGLDFLHSHR--VVHRDLKPQNILVT  150 (305)
T ss_dssp             EEEEEEEEECCSCBHHHHHHHS-CTTCSCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCGGGEEEC
T ss_pred             CceEEEEEEeccCCchhhhhhc-cCCCCCHHHHHHHHHHHHHHHHHHHhCC--EEecCCCccEEEEc
Confidence            3478999999988665544433 3346899999999999999999999999  99999999999986

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.94  E-value=2.7e-27  Score=182.32  Aligned_cols=128  Identities=12%  Similarity=0.137  Sum_probs=110.8

Q ss_pred             CCCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcCC-CceeeeeeeeeCCCceEEEE
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSH-PNVLPVIGCVNSPPDLVVIS  178 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h-~~iv~l~~~~~~~~~~~lv~  178 (239)
                      ..|++.+.||+|+||.||+|.+  .++.+|+|++......    ..+.+|+..+..++| +|++.+++++......++||
T Consensus         5 ~~Y~i~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~----~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~~vm   80 (293)
T d1csna_           5 VHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDA----PQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVI   80 (293)
T ss_dssp             TTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTTS----CCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEE
T ss_pred             CceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEccccCc----HHHHHHHHHHHHhcCCCCCCEEEEEeecCCccEEEE
Confidence            5688999999999999999986  4567888987654322    346678888998865 89999999999999999999


Q ss_pred             eeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        179 QYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       179 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||+ +|+|.+++.... ..+++.++..++.|++.||+|||+.|  ||||||||+|||++
T Consensus        81 e~~-~~~l~~~~~~~~-~~~~~~~~~~i~~q~~~~l~~lH~~g--iiHrDiKp~Nili~  135 (293)
T d1csna_          81 DLL-GPSLEDLLDLCG-RKFSVKTVAMAAKQMLARVQSIHEKS--LVYRDIKPDNFLIG  135 (293)
T ss_dssp             ECC-CCBHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHTTT--EECCCCCGGGEEEC
T ss_pred             Eec-CCCHHHHHHhhc-cchhhHHHHHHHHHHHHHHHHHHHCC--ceeccCCccceeec
Confidence            999 679999987654 36999999999999999999999999  99999999999985

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.94  E-value=1e-26  Score=179.78  Aligned_cols=128  Identities=16%  Similarity=0.209  Sum_probs=105.2

Q ss_pred             CCCcccccccCCCCCCceeeccC--CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCc-eeeeeeeeeCCCceEEEE
Q psy12580        102 NDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPN-VLPVIGCVNSPPDLVVIS  178 (239)
Q Consensus       102 ~~~~~~~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~-iv~l~~~~~~~~~~~lv~  178 (239)
                      +.|++.+.||+|+||.||+|.+.  +..+|+|++......    ..+..|+.+++.++|++ |+.+.+++...+..++||
T Consensus         7 ~rY~l~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~----~~~~~E~~i~~~l~~~~~i~~~~~~~~~~~~~~ivm   82 (299)
T d1ckia_           7 NRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKH----PQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVM   82 (299)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEESCTTS----CCHHHHHHHHHHSTTSTTCCCEEEEEEETTEEEEEE
T ss_pred             CEEEEeEEEeeCCCcEEEEEEECCCCCEEEEEEEchhccC----HHHHHHHHHHHHccCCCcccEEEEEEecCCEEEEEE
Confidence            35889999999999999999863  567888987654322    35778999999998765 555556667777899999


Q ss_pred             eeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        179 QYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       179 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ||++ |+|.+.+.... ..+++..+..++.|++.||+|||+.|  ||||||||+|||++
T Consensus        83 e~~~-~~l~~~~~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~--iiHrDiKp~NIl~~  137 (299)
T d1ckia_          83 ELLG-PSLEDLFNFCS-RKFSLKTVLLLADQMISRIEYIHSKN--FIHRDVKPDNFLMG  137 (299)
T ss_dssp             ECCC-CBHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCCGGGEEEC
T ss_pred             EEcC-Cchhhhhhhcc-CCCcHHHHHHHHHHHHHHHHHHHHCC--eeeccCCHhhcccc
Confidence            9995 57777776544 26999999999999999999999999  99999999999975

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.87  E-value=6.1e-23  Score=148.16  Aligned_cols=118  Identities=16%  Similarity=0.127  Sum_probs=90.5

Q ss_pred             cccccccCCCCCCceeecc-CCCceeeeeeeeccCC----------------chHHHHHHHHHhHhhhcCCCceeeeeee
Q psy12580        105 SLHTKISSGPNGDTWRGRW-QKNDIVAKILAVRNCT----------------PRVSRDFNEEFPKLRIFSHPNVLPVIGC  167 (239)
Q Consensus       105 ~~~~~ig~g~~g~v~~~~~-~~~~~~vk~~~~~~~~----------------~~~~~~~~~e~~~l~~l~h~~iv~l~~~  167 (239)
                      .+.+.||+|+||.||+|.. +++.+|+|++......                .........|...+.++.|++++..+++
T Consensus         3 ~vg~~IG~G~~g~Vy~a~~~~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~v~~~~~~   82 (191)
T d1zara2           3 AIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPKVYAW   82 (191)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSSCCEEEE
T ss_pred             hhCCEeeeCcceEEEEEECCCCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHccCCCcceEEEe
Confidence            4678999999999999986 5678888986432110                0011234567888899999999988766


Q ss_pred             eeCCCceEEEEeeCCCCCHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhcCCCCcccCCCCCccceee
Q psy12580        168 VNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       168 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~ivHrdikp~Nill~  237 (239)
                      ..    .+++|||+++..+.         .++...+..++.|++.||.|||+.|  |+||||||+|||++
T Consensus        83 ~~----~~lvme~~~~~~~~---------~l~~~~~~~i~~ql~~~l~~lH~~g--iiHrDiKP~NILv~  137 (191)
T d1zara2          83 EG----NAVLMELIDAKELY---------RVRVENPDEVLDMILEEVAKFYHRG--IVHGDLSQYNVLVS  137 (191)
T ss_dssp             ET----TEEEEECCCCEEGG---------GCCCSCHHHHHHHHHHHHHHHHHTT--EECSCCSTTSEEEE
T ss_pred             cC----CEEEEEeecccccc---------chhhHHHHHHHHHHHHHHHHHhhCC--EEEccCChhheeee
Confidence            42    37999999886543         2445566789999999999999999  99999999999986

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=2.2e-22  Score=159.22  Aligned_cols=130  Identities=15%  Similarity=0.262  Sum_probs=101.0

Q ss_pred             CCcccccccCCCCCCceeecc--CCCceeeeeeeeccCCchHHHHHHHHHhHhhhcC-----------CCceeeeeeeee
Q psy12580        103 DLSLHTKISSGPNGDTWRGRW--QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFS-----------HPNVLPVIGCVN  169 (239)
Q Consensus       103 ~~~~~~~ig~g~~g~v~~~~~--~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~-----------h~~iv~l~~~~~  169 (239)
                      .|++.+.||+|+||.||+|..  .+..+|+|++...   ....+.+.+|+.+++.+.           |+||+++++++.
T Consensus        14 rY~i~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~---~~~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~~~   90 (362)
T d1q8ya_          14 RYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGD---KVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFN   90 (362)
T ss_dssp             TEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC---HHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEE
T ss_pred             cEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEecc---ccchHHHHHHHHHHHHhcchhhhhhhhcCcCceEEEEEEee
Confidence            488999999999999999976  4677888988643   233356677888877664           578999998875


Q ss_pred             C--CCceEEEEeeCCCC-CHHHHhhcCCCcccCHHHHHHHHHHHHHHhhhhhc-CCCCcccCCCCCccceee
Q psy12580        170 S--PPDLVVISQYMAWG-SLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS-LERIIPQYQLNSRHVMVY  237 (239)
Q Consensus       170 ~--~~~~~lv~e~~~~g-sL~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~-~~~~ivHrdikp~Nill~  237 (239)
                      .  ....+++++++..+ +............+++..++.++.||+.||+|||+ .|  |+||||||+||||+
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~qil~al~~lh~~~~--IvHrDlKp~NIll~  160 (362)
T d1q8ya_          91 HKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCG--IIHTDIKPENVLME  160 (362)
T ss_dssp             EEETTEEEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTC--EECSCCSGGGEEEE
T ss_pred             eccccceeeeeeecccccccccccccccccCCcHHHHHHHHHHHHHHHHHHhhhcC--cccccCChhHeeee
Confidence            4  34566666665444 34444444444578999999999999999999997 88  99999999999996

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.83  E-value=7.7e-21  Score=126.19  Aligned_cols=84  Identities=33%  Similarity=0.431  Sum_probs=67.7

Q ss_pred             CcCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCc
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSW   81 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (239)
                      .|+|.+|.+|+||||+|+..++.+++++|++.|+++|.+|..|+||||+|+..|+.+++++|+ +.|++++..|.+|.||
T Consensus        26 ~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~~v~~Ll-~~Gad~~~~d~~G~t~  104 (118)
T d1myoa_          26 EDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLL-SKGADKTVKGPDGLTA  104 (118)
T ss_dssp             CCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCHHHHHHH-TTCCCSSSSSSSTCCC
T ss_pred             hccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCchhhhhhhh-cccccceeeCCCCCCH
Confidence            367788888888888888888888888888888888888888888888888888888888884 5778888888888888


Q ss_pred             ccccc
Q psy12580         82 LGLKT   86 (239)
Q Consensus        82 l~~a~   86 (239)
                      +++|.
T Consensus       105 l~~a~  109 (118)
T d1myoa_         105 LEATD  109 (118)
T ss_dssp             CCTCS
T ss_pred             HHHHh
Confidence            87763

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=2.6e-19  Score=120.78  Aligned_cols=82  Identities=28%  Similarity=0.428  Sum_probs=72.3

Q ss_pred             CcCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCccccccc-CCCC
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINF-KDQS   80 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~-~~~t   80 (239)
                      .|+|.+|.+|+||||+||..++.+++++|++.|++++.+|.+|+||||+|+..|+.+++++|+ +.|++++..+. .+.|
T Consensus        25 ~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll-~~ga~v~~~~~~~~~~  103 (130)
T d1ycsb1          25 DDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLV-ESGAAVFAMTYSDMQT  103 (130)
T ss_dssp             SSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCSSSCCC
T ss_pred             CCccccccccccccccccccccccccccccccccccccccccCcccccccchhhHHHHHHHHH-HcCCCcccccCCCCCC
Confidence            478999999999999999999999999999999999999999999999999999999999995 58888887665 4666


Q ss_pred             cccc
Q psy12580         81 WLGL   84 (239)
Q Consensus        81 ~l~~   84 (239)
                      ++.+
T Consensus       104 ~~~~  107 (130)
T d1ycsb1         104 AADK  107 (130)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6543

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=5.8e-19  Score=122.21  Aligned_cols=88  Identities=17%  Similarity=0.296  Sum_probs=80.5

Q ss_pred             CCCCCchHHHHHHHh---CCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCccc
Q psy12580          7 TDDHGFSPLHWACKE---GHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWLG   83 (239)
Q Consensus         7 ~~~~g~tpl~~a~~~---~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l~   83 (239)
                      .+..|+||||+|+..   ++.+++++|++.|+++|.+|..|+||||+|+..|+.+++++|+ +.|++++..|..|.||++
T Consensus        41 ~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~v~~Ll-~~gad~~~~d~~g~tpL~  119 (154)
T d1dcqa1          41 GHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL-RGKASIEIANESGETPLD  119 (154)
T ss_dssp             CSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHH
T ss_pred             CCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhcccccccccccccccccccc-ccCccccccCCCCCCHHH
Confidence            477899999999974   6789999999999999999999999999999999999999995 589999999999999999


Q ss_pred             cccccCcccccc
Q psy12580         84 LKTRSRDATLSR   95 (239)
Q Consensus        84 ~a~~~~~~~~~~   95 (239)
                      +|...++..+.+
T Consensus       120 ~A~~~~~~~i~~  131 (154)
T d1dcqa1         120 IAKRLKHEHCEE  131 (154)
T ss_dssp             HHHHTTCHHHHH
T ss_pred             HHHHcCCHHHHH
Confidence            998888766554

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=7.6e-19  Score=116.40  Aligned_cols=102  Identities=23%  Similarity=0.242  Sum_probs=86.8

Q ss_pred             chHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCccccccccCcc
Q psy12580         12 FSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWLGLKTRSRDA   91 (239)
Q Consensus        12 ~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~   91 (239)
                      .|||+||+++|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+ +.|.+++..+..|.||+++|...++.
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll-~~g~din~~d~~g~tpLh~A~~~~~~   81 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLL-LKGADINAPDKHHITPLLSAVYEGHV   81 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHH-HSSCTTTCCSSSCSCHHHHHHTTTCC
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccc-cccceeeecccccccchhhhhhcCch
Confidence            58999999999999999999999999999999999999999999999999995 58999999999999999999999888


Q ss_pred             ccccccCCCCCCCcccccccCCC
Q psy12580         92 TLSRHKGISLNDLSLHTKISSGP  114 (239)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~ig~g~  114 (239)
                      .+.+..--...++...+.-|..+
T Consensus        82 ~~v~~Ll~~Gad~~~~d~~G~t~  104 (118)
T d1myoa_          82 SCVKLLLSKGADKTVKGPDGLTA  104 (118)
T ss_dssp             HHHHHHHTTCCCSSSSSSSTCCC
T ss_pred             hhhhhhhcccccceeeCCCCCCH
Confidence            77765433333444444444443

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=2.2e-17  Score=114.13  Aligned_cols=64  Identities=25%  Similarity=0.401  Sum_probs=61.8

Q ss_pred             CcCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHh
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAV   65 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~   65 (239)
                      .|||.+|.+|+||||+||..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+.
T Consensus        72 adin~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~  135 (154)
T d1dcqa1          72 GNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQ  135 (154)
T ss_dssp             SCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CChhhhhhhhccccccccccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            4799999999999999999999999999999999999999999999999999999999999965

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=3e-18  Score=114.64  Aligned_cols=91  Identities=23%  Similarity=0.291  Sum_probs=71.8

Q ss_pred             cCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCC-CHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCc
Q psy12580          3 YVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDD-TPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSW   81 (239)
Q Consensus         3 ~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~-t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (239)
                      |+|.+|.+|+||+|+|+ .|+.+++++|+++|++++.++..+. ||||+|+..|+.+++++|+ +.|++++..|..|.||
T Consensus        28 d~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll-~~ga~~~~~d~~G~T~  105 (125)
T d1bi7b_          28 NPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLH-RAGARLDVRDAWGRLP  105 (125)
T ss_dssp             CTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHH-HHTCCSSCCCTTCCCH
T ss_pred             ccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccCCCCCH
Confidence            67888888888888664 6788888888888888888887766 5888888888888888885 4688888888888888


Q ss_pred             cccccccCcccccc
Q psy12580         82 LGLKTRSRDATLSR   95 (239)
Q Consensus        82 l~~a~~~~~~~~~~   95 (239)
                      +++|...++..+.+
T Consensus       106 l~~A~~~g~~~~v~  119 (125)
T d1bi7b_         106 VDLAEELGHRDVAR  119 (125)
T ss_dssp             HHHHHHHTCHHHHH
T ss_pred             HHHHHHcCCHHHHH
Confidence            88887777655544

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.66  E-value=1.4e-17  Score=126.20  Aligned_cols=91  Identities=30%  Similarity=0.373  Sum_probs=79.9

Q ss_pred             cCccCC-CCCchHHHHHHHhCCHHHHHHH--------HHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccc
Q psy12580          3 YVSVTD-DHGFSPLHWACKEGHLKLVELL--------LQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTK   73 (239)
Q Consensus         3 ~v~~~~-~~g~tpl~~a~~~~~~~~~~~l--------l~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~   73 (239)
                      ++|..| .+|+||||+||.+|+.+++++|        ++.|||+|.+|.+|+||||+|+..|+.+++++|+ +.|++++.
T Consensus        24 ~~n~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll-~~Gad~n~  102 (277)
T d2fo1e1          24 SVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLM-KAGADPTI  102 (277)
T ss_dssp             TTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH-HTTCCSCC
T ss_pred             CCCcCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeecccccccccccccccc-cccccccc
Confidence            466667 4699999999999999999776        5789999999999999999999999999999995 58999999


Q ss_pred             cccCCCCccccccccCccccc
Q psy12580         74 INFKDQSWLGLKTRSRDATLS   94 (239)
Q Consensus        74 ~~~~~~t~l~~a~~~~~~~~~   94 (239)
                      .+..|.|++.++...+.....
T Consensus       103 ~~~~g~t~l~~a~~~~~~~~~  123 (277)
T d2fo1e1         103 YNKSERSALHQAAANRDFGMM  123 (277)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHH
T ss_pred             ccccccccccchhhhcchhhh
Confidence            999999999988877665443

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=4.7e-17  Score=109.47  Aligned_cols=84  Identities=20%  Similarity=0.225  Sum_probs=78.3

Q ss_pred             hHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCccccccccCccc
Q psy12580         13 SPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWLGLKTRSRDAT   92 (239)
Q Consensus        13 tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~   92 (239)
                      ++|+.||..|+.+++++|+++|+++|.+|.+|+||||+|+..|+.+++++|+ +.+.+++..|.+|.||+++|...++..
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll-~~g~~~~~~d~~g~tpLh~A~~~g~~~   81 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLV-QFGVNVNAADSDGWTPLHCAASCNNVQ   81 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHH-HHTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCcccccccccccccccccccccccccccc-ccccccccccccCcccccccchhhHHH
Confidence            6899999999999999999999999999999999999999999999999995 589999999999999999999988877


Q ss_pred             ccccc
Q psy12580         93 LSRHK   97 (239)
Q Consensus        93 ~~~~~   97 (239)
                      +.+..
T Consensus        82 ~v~~L   86 (130)
T d1ycsb1          82 VCKFL   86 (130)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76644

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=5.4e-17  Score=121.56  Aligned_cols=90  Identities=26%  Similarity=0.259  Sum_probs=81.3

Q ss_pred             ccCCCCCchHHHHHHHhCCHHHHHHHHHCCCC---CCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCc
Q psy12580          5 SVTDDHGFSPLHWACKEGHLKLVELLLQRGAR---VNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSW   81 (239)
Q Consensus         5 ~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~---~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (239)
                      +.-|++|.||||+||..++.+++++|++.|++   ++.+|..|+||||+|+..|+.+++++|+ +.|++++..+.+|.||
T Consensus         3 ~~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll-~~ga~i~~~d~~g~tp   81 (255)
T d1oy3d_           3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY-AAGAGVLVAERGGHTA   81 (255)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHH-HTTCCSSCCCTTSCCH
T ss_pred             ccCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccc-cccccccccccccchh
Confidence            45689999999999999999999999999988   6778899999999999999999999995 5899999999999999


Q ss_pred             cccccccCcccccc
Q psy12580         82 LGLKTRSRDATLSR   95 (239)
Q Consensus        82 l~~a~~~~~~~~~~   95 (239)
                      +++|...+...+..
T Consensus        82 L~~A~~~~~~~~~~   95 (255)
T d1oy3d_          82 LHLACRVRAHTCAC   95 (255)
T ss_dssp             HHHHTTTTCHHHHH
T ss_pred             hhhhhccCchHHHH
Confidence            99998877765544

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=8.2e-17  Score=118.38  Aligned_cols=95  Identities=22%  Similarity=0.362  Sum_probs=83.3

Q ss_pred             CcCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCc
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSW   81 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (239)
                      .++|.+|.+|+||||+|+..++.+++++|+++|++++.++..|.||||+|+..++.+++++| ...+.+++..+..|.||
T Consensus        94 ~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L-~~~~~~i~~~d~~g~Tp  172 (223)
T d1uoha_          94 AQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHIL-LYYKASTNIQDTEGNTP  172 (223)
T ss_dssp             CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH-HHTTCCSCCCCTTCCCH
T ss_pred             ceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhh-ccccceeeeccCCCCce
Confidence            46788999999999999999999999999999999999999999999999999999998888 45888899999999999


Q ss_pred             cccccccCcccccccc
Q psy12580         82 LGLKTRSRDATLSRHK   97 (239)
Q Consensus        82 l~~a~~~~~~~~~~~~   97 (239)
                      ++.|...+...+.+..
T Consensus       173 L~~Aa~~g~~~~v~~L  188 (223)
T d1uoha_         173 LHLACDEERVEEAKLL  188 (223)
T ss_dssp             HHHHHHTTCHHHHHHH
T ss_pred             eccccccCcHHHHHHH
Confidence            9998888877666544

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=1.2e-16  Score=119.64  Aligned_cols=94  Identities=27%  Similarity=0.351  Sum_probs=85.1

Q ss_pred             CcCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCcc-CCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCC
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNAT-NRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQS   80 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~-~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t   80 (239)
                      .++|.+|.+|+||||+||..++.+++++|++.+++.+.. +..|.||||+|+..|+.+++++|+ +.|++++..|..|.|
T Consensus       149 ~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll-~~gadin~~d~~g~t  227 (255)
T d1oy3d_         149 LQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLL-KAGADPTARMYGGRT  227 (255)
T ss_dssp             GGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCC
T ss_pred             cccccccccCcccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHH-HCCCCCCCCCCCCCC
Confidence            467889999999999999999999999999999998865 678999999999999999999995 589999999999999


Q ss_pred             ccccccccCccccccc
Q psy12580         81 WLGLKTRSRDATLSRH   96 (239)
Q Consensus        81 ~l~~a~~~~~~~~~~~   96 (239)
                      |+++|...++..+.+.
T Consensus       228 ~L~~A~~~~~~~i~~~  243 (255)
T d1oy3d_         228 PLGSALLRPNPILARL  243 (255)
T ss_dssp             HHHHHHTSSCHHHHHH
T ss_pred             HHHHHHHCCCHHHHHH
Confidence            9999998888766553

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.63  E-value=3.3e-16  Score=113.66  Aligned_cols=94  Identities=24%  Similarity=0.352  Sum_probs=87.3

Q ss_pred             CcCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCc
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSW   81 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (239)
                      .+++.+|..|+|||++|+..+..++++.+++.+++++..|..|.||||.|+..|+.+++++|+ +.|++++..|..|.||
T Consensus       114 ~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll-~~gad~n~~d~~g~Tp  192 (209)
T d1ot8a_         114 ADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALL-DNFANREITDHMDRLP  192 (209)
T ss_dssp             CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCH
T ss_pred             ccccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccchhccccHHHHHHHHH-HCCCCCCCcCCCCCCH
Confidence            467889999999999999999999999999999999999999999999999999999999995 5899999999999999


Q ss_pred             cccccccCccccccc
Q psy12580         82 LGLKTRSRDATLSRH   96 (239)
Q Consensus        82 l~~a~~~~~~~~~~~   96 (239)
                      +++|...++..+++.
T Consensus       193 l~~A~~~~~~~iv~l  207 (209)
T d1ot8a_         193 RDVASERLHHDIVRL  207 (209)
T ss_dssp             HHHHHHTTCHHHHHH
T ss_pred             HHHHHHcCCHHHHhh
Confidence            999999888766653

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.62  E-value=8.1e-16  Score=113.16  Aligned_cols=85  Identities=32%  Similarity=0.365  Sum_probs=78.8

Q ss_pred             cCccCCCCCchHHHHHHHhCCHHHHHHHHHCC-CCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCc
Q psy12580          3 YVSVTDDHGFSPLHWACKEGHLKLVELLLQRG-ARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSW   81 (239)
Q Consensus         3 ~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g-~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (239)
                      +++.+|.+|+||||+|+..|+.+++++|++.| .+++.+|..|+||||+|+..|+.+++++|+.+.|++++..|..|.|+
T Consensus       130 ~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~  209 (229)
T d1ixva_         130 SVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKA  209 (229)
T ss_dssp             CSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCT
T ss_pred             cccccCCCCCCccchhhhcccccccccccccccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCH
Confidence            46778999999999999999999999999986 68999999999999999999999999999777799999999999999


Q ss_pred             cccccc
Q psy12580         82 LGLKTR   87 (239)
Q Consensus        82 l~~a~~   87 (239)
                      +++|..
T Consensus       210 l~~A~~  215 (229)
T d1ixva_         210 EDVALN  215 (229)
T ss_dssp             GGGCSC
T ss_pred             HHHHhh
Confidence            998764

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=6e-16  Score=106.81  Aligned_cols=87  Identities=31%  Similarity=0.453  Sum_probs=51.5

Q ss_pred             cCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCccccc
Q psy12580          6 VTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWLGLK   85 (239)
Q Consensus         6 ~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a   85 (239)
                      ..+..+.+++++++...+.+++++++..|++++.+|..|+||||+|+..|+.+++++| .+.|++++..|..|.||+++|
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~l-l~~gad~~~~d~~g~Tpl~~A  140 (153)
T d1awcb_          62 ARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELL-IKYGADVHTQSKFCKTAFDIS  140 (153)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH-HHTTCCTTCCCTTSCCHHHHH
T ss_pred             ccccccccccccccccccceeeecccccCCccccccccCchHHHhhhhcchhheeeec-cccccCCcccCCCCCCHHHHH
Confidence            3444455566666666666666666666666666666666666666666666666655 345566666666666666666


Q ss_pred             cccCcccc
Q psy12580         86 TRSRDATL   93 (239)
Q Consensus        86 ~~~~~~~~   93 (239)
                      ...++..+
T Consensus       141 ~~~g~~ei  148 (153)
T d1awcb_         141 IDNGNEDL  148 (153)
T ss_dssp             HHTTCHHH
T ss_pred             HHcCCHHH
Confidence            55555443

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.62  E-value=8.9e-16  Score=116.99  Aligned_cols=83  Identities=28%  Similarity=0.331  Sum_probs=77.8

Q ss_pred             CccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCccc
Q psy12580          4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWLG   83 (239)
Q Consensus         4 v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l~   83 (239)
                      ....+..|.||||+|+..|+.+++++|++.|+++|.++..|+||||+|+..|+.++|++|+ +.|++++..|..|.||++
T Consensus       192 ~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl-~~Gadv~~~d~~G~TaL~  270 (291)
T d1s70b_         192 DVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILV-ENLCDMEAVNKVGQTAFD  270 (291)
T ss_dssp             CCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCTTT
T ss_pred             cccccCCCCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHH-HCCCCCCCcCCCCCCHHH
Confidence            4557788999999999999999999999999999999999999999999999999999995 699999999999999999


Q ss_pred             cccc
Q psy12580         84 LKTR   87 (239)
Q Consensus        84 ~a~~   87 (239)
                      +|..
T Consensus       271 ~A~e  274 (291)
T d1s70b_         271 VADE  274 (291)
T ss_dssp             SCCS
T ss_pred             HHHH
Confidence            9864

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.60  E-value=1e-15  Score=111.09  Aligned_cols=62  Identities=34%  Similarity=0.399  Sum_probs=60.1

Q ss_pred             CcCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHH
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL   63 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~L   63 (239)
                      .++|.+|.+|.||||+||..|+.+++++|++.|++++.+|..|+||||+|+..|+.++|++|
T Consensus       147 ~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         147 ANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccccccccccccccchhccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            47899999999999999999999999999999999999999999999999999999999987

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.5e-15  Score=111.57  Aligned_cols=84  Identities=24%  Similarity=0.351  Sum_probs=80.2

Q ss_pred             CcCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCc
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSW   81 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (239)
                      .|+|.+|..|.||||+|+..++.+++++|++.|++++.+|..|+||||.|+..|+.+++++|+ +.|++++..|..|.||
T Consensus       127 ~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL-~~Gad~~~~d~~g~tp  205 (223)
T d1uoha_         127 ANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLV-SQGASIYIENKEEKTP  205 (223)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHH-HTTCCSCCCCTTSCCH
T ss_pred             CCCCCcCCCCCccchhhhhcCCcchhhhhccccceeeeccCCCCceeccccccCcHHHHHHHH-HCCCCCCCCCCCCCCH
Confidence            478999999999999999999999999999999999999999999999999999999999995 5899999999999999


Q ss_pred             ccccc
Q psy12580         82 LGLKT   86 (239)
Q Consensus        82 l~~a~   86 (239)
                      +++|.
T Consensus       206 l~~A~  210 (223)
T d1uoha_         206 LQVAK  210 (223)
T ss_dssp             HHHCC
T ss_pred             HHHHH
Confidence            99884

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2.6e-15  Score=104.06  Aligned_cols=91  Identities=20%  Similarity=0.264  Sum_probs=55.0

Q ss_pred             cCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCcc
Q psy12580          3 YVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWL   82 (239)
Q Consensus         3 ~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l   82 (239)
                      ++|.+|..|+||||+|+. ++.+++++|++.+++++..+..|.+|++.++..++.++++.++ +.+.+++..+..+.|++
T Consensus        28 ~~n~~d~~g~t~L~~A~~-~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l-~~~~~~n~~~~~~~t~L  105 (156)
T d1bd8a_          28 HPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLV-EHGADVNVPDGTGALPI  105 (156)
T ss_dssp             CTTCCCTTSCCHHHHSCT-TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCSCCCCTTSCCHH
T ss_pred             CCCccCCCCCcccccccc-ccccccccccccccccccccccccccccccccccccccccccc-ccccccccccCCCCeee
Confidence            556666666666666553 5556666666666666666666666666666666666666653 35555666666666666


Q ss_pred             ccccccCcccccc
Q psy12580         83 GLKTRSRDATLSR   95 (239)
Q Consensus        83 ~~a~~~~~~~~~~   95 (239)
                      ++|...+...+.+
T Consensus       106 ~~A~~~~~~~i~~  118 (156)
T d1bd8a_         106 HLAVQEGHTAVVS  118 (156)
T ss_dssp             HHHHHHTCHHHHH
T ss_pred             ccccccccccccc
Confidence            6666555555444

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2e-15  Score=100.60  Aligned_cols=63  Identities=30%  Similarity=0.461  Sum_probs=59.4

Q ss_pred             CcCccCCCCCc-hHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHH
Q psy12580          2 YYVSVTDDHGF-SPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLA   64 (239)
Q Consensus         2 ~~v~~~~~~g~-tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll   64 (239)
                      .++|.+|..|. ||||+||..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+
T Consensus        59 a~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Ll  122 (125)
T d1bi7b_          59 AEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLR  122 (125)
T ss_dssp             CCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHH
Confidence            47888998876 6999999999999999999999999999999999999999999999999994

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=4e-15  Score=112.84  Aligned_cols=72  Identities=29%  Similarity=0.355  Sum_probs=61.4

Q ss_pred             cCccCCCCCchHHHHHHHhCCHHHHHHHHHC-CCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccc
Q psy12580          3 YVSVTDDHGFSPLHWACKEGHLKLVELLLQR-GARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKIN   75 (239)
Q Consensus         3 ~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~-g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~   75 (239)
                      ++|.+|..|.||||+|+..++.+++++|++. |+++|.+|.+|+||||+|+..|+.+++++|+ +.|++++..|
T Consensus       211 ~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll-~~GAd~n~~d  283 (285)
T d1wdya_         211 DVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLC-KRGASTDCGD  283 (285)
T ss_dssp             CSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HHSSCSCCSS
T ss_pred             CCCccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHH-HCCCCCCccc
Confidence            6788888889999999998889999888874 8889888888999999999889999888884 5888887665

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.56  E-value=1.8e-15  Score=116.15  Aligned_cols=81  Identities=21%  Similarity=0.288  Sum_probs=67.7

Q ss_pred             CcCccC-CCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCH-------hHHHHHHhhcCCcccc
Q psy12580          2 YYVSVT-DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHL-------DIVRLLAVQNNQDLTK   73 (239)
Q Consensus         2 ~~v~~~-~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~-------~~v~~Ll~~~~~~~~~   73 (239)
                      +|||.+ |.+|+||||+||..|+.++|++|++.||+++.+|..|+||||.|+..++.       ++++++    ......
T Consensus        97 ~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l----~~~~~~  172 (301)
T d1sw6a_          97 LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYL----YPCLIL  172 (301)
T ss_dssp             CCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHH----GGGGGE
T ss_pred             CCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHH----hhhhhh
Confidence            578877 99999999999999999999999999999999999999999999987652       333333    345567


Q ss_pred             cccCCCCcccccc
Q psy12580         74 INFKDQSWLGLKT   86 (239)
Q Consensus        74 ~~~~~~t~l~~a~   86 (239)
                      .+..|.|+++.+.
T Consensus       173 ~d~~g~t~lh~~~  185 (301)
T d1sw6a_         173 EDSMNRTILHHII  185 (301)
T ss_dssp             ECTTCCCHHHHHH
T ss_pred             cccccCCHHHHHH
Confidence            7888899987554

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.5e-15  Score=120.90  Aligned_cols=80  Identities=39%  Similarity=0.530  Sum_probs=72.4

Q ss_pred             hHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCccccccccCccc
Q psy12580         13 SPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWLGLKTRSRDAT   92 (239)
Q Consensus        13 tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~   92 (239)
                      ||||+||..|+.++|++|++.|+++|..|..|+||||+|+..|+.+++++|+ +.|++++..+..|.|++++|...+...
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~~g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll-~~gadi~~~~~~g~t~L~~A~~~g~~~   80 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLL-QNKAKVNAKAKDDQTPLHCAARIGHTN   80 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHH-HHTCCSSCCCTTSCCHHHHHHHHTCHH
T ss_pred             ChHHHHHHCcCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-HCcCCCCCCCCCCCCHHHHHHHcCCHH
Confidence            8999999999999999999999999999999999999999999999999995 589999999999999998887766654


Q ss_pred             c
Q psy12580         93 L   93 (239)
Q Consensus        93 ~   93 (239)
                      +
T Consensus        81 ~   81 (408)
T d1n11a_          81 M   81 (408)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=4.2e-15  Score=108.15  Aligned_cols=83  Identities=30%  Similarity=0.398  Sum_probs=73.0

Q ss_pred             CCCchHHHHHHHhCCHHHHHHHHH----CCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCcccc
Q psy12580          9 DHGFSPLHWACKEGHLKLVELLLQ----RGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWLGL   84 (239)
Q Consensus         9 ~~g~tpl~~a~~~~~~~~~~~ll~----~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~   84 (239)
                      ++|+||||+||..|+.++++.|++    .|+++|.+|..|+||||+|+..|+.+++++|+ +.+++.+.....+.++...
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll-~~ga~~~~~~~~~~~~~~~   79 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLV-TAGASPMALDRHGQTAAHL   79 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhcccccccccccc-ccccccccccccccccccc
Confidence            479999999999999999998874    89999999999999999999999999999995 5888888888888888877


Q ss_pred             ccccCccc
Q psy12580         85 KTRSRDAT   92 (239)
Q Consensus        85 a~~~~~~~   92 (239)
                      +.......
T Consensus        80 a~~~~~~~   87 (228)
T d1k1aa_          80 ACEHRSPT   87 (228)
T ss_dssp             HHHTTCHH
T ss_pred             cccccccc
Confidence            66555543

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=4e-15  Score=118.44  Aligned_cols=93  Identities=35%  Similarity=0.507  Sum_probs=83.9

Q ss_pred             CcCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCc
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSW   81 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (239)
                      .++|..+..+.||||.|+..++.++++++++.|+++|.+|..|+||||.|+..|+.++|++|+ +.|++++..|.+|.||
T Consensus       288 ~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll-~~GAd~n~~d~~G~t~  366 (408)
T d1n11a_         288 VMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLL-KNGASPNEVSSDGTTP  366 (408)
T ss_dssp             CCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCSCCCCSSSCCH
T ss_pred             CccccccccccccchhhcccCcceeeeeeccccccccccCCCCCCHHHHHHHcCCHHHHHHHH-HCCCCCCCCCCCCCCH
Confidence            467888888999999999999999999999999999999999999999999999999999995 5899999999999999


Q ss_pred             cccccccCcccccc
Q psy12580         82 LGLKTRSRDATLSR   95 (239)
Q Consensus        82 l~~a~~~~~~~~~~   95 (239)
                      +++|...++..+++
T Consensus       367 L~~A~~~~~~~iv~  380 (408)
T d1n11a_         367 LAIAKRLGYISVTD  380 (408)
T ss_dssp             HHHHHHTTCHHHHH
T ss_pred             HHHHHHcCCHHHHH
Confidence            99999888876655

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.54  E-value=8.4e-15  Score=110.55  Aligned_cols=91  Identities=20%  Similarity=0.392  Sum_probs=65.7

Q ss_pred             CccCCCCCchHHHHHHHhCCHHHHHHHH-HCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCcc
Q psy12580          4 VSVTDDHGFSPLHWACKEGHLKLVELLL-QRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWL   82 (239)
Q Consensus         4 v~~~~~~g~tpl~~a~~~~~~~~~~~ll-~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l   82 (239)
                      .+..+..|+||||+++..++.+++++++ ..+.+++.+|..|+||||+|+..|+.+++++|+ +.|++++..|..|.|++
T Consensus       180 ~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll-~~gadin~~d~~G~T~L  258 (277)
T d2fo1e1         180 KDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLI-QQGASVEAVDATDHTAR  258 (277)
T ss_dssp             TSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH-HTTCCSSCCCSSSCCHH
T ss_pred             ccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHH-HCcCCCCCcCCCCCCHH
Confidence            4556677777777777777777776544 457777777777777777777777777777774 46777777777777777


Q ss_pred             ccccccCcccccc
Q psy12580         83 GLKTRSRDATLSR   95 (239)
Q Consensus        83 ~~a~~~~~~~~~~   95 (239)
                      ++|...++..+.+
T Consensus       259 ~~A~~~~~~~iv~  271 (277)
T d2fo1e1         259 QLAQANNHHNIVD  271 (277)
T ss_dssp             HHHHHTTCHHHHH
T ss_pred             HHHHHcCCHHHHH
Confidence            7777777655544

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.53  E-value=1.2e-16  Score=125.03  Aligned_cols=90  Identities=14%  Similarity=0.097  Sum_probs=42.3

Q ss_pred             ccCCCCCchHHHHHHHhCCHHHHHH---HHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccc--cCCC
Q psy12580          5 SVTDDHGFSPLHWACKEGHLKLVEL---LLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKIN--FKDQ   79 (239)
Q Consensus         5 ~~~~~~g~tpl~~a~~~~~~~~~~~---ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~--~~~~   79 (239)
                      +.+|..|.||||+||.+|+.+++++   |++.|+++|.+|..|+||||+||..||.++|++|+ +.|++++..+  .+|.
T Consensus        84 ~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll-~~g~~~~~~~~~~~g~  162 (346)
T d2ajaa1          84 HKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLC-ELAPTEIMAMIQAENY  162 (346)
T ss_dssp             HHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHH-HSCTTTHHHHHSHHHH
T ss_pred             HhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHH-HcCCCccccccccCCC
Confidence            3444555555555555555444333   44455555555555555555555555555555553 2444444332  2344


Q ss_pred             CccccccccCcccccc
Q psy12580         80 SWLGLKTRSRDATLSR   95 (239)
Q Consensus        80 t~l~~a~~~~~~~~~~   95 (239)
                      ||+++|...++..+.+
T Consensus       163 t~L~~Aa~~g~~~iv~  178 (346)
T d2ajaa1         163 HAFRLAAENGHLHVLN  178 (346)
T ss_dssp             HHHHHHHHTTCHHHHH
T ss_pred             ChhHHHHHHhhHHHHH
Confidence            5555555555544443

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.4e-15  Score=105.43  Aligned_cols=92  Identities=30%  Similarity=0.459  Sum_probs=73.9

Q ss_pred             CcCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCc
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSW   81 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (239)
                      .++|.++.+|.+|++.|+..++.++++++++.|+++|.+|..|+||||+|+..|+.+++++|+  .+++++..|..|.||
T Consensus        59 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~--~~~~~~~~d~~G~Tp  136 (156)
T d1bd8a_          59 ASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA--AESDLHRRDARGLTP  136 (156)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH--TTSCTTCCCTTSCCH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccCCCCeeecccccccccccccccc--ccccccccCCCCCCH
Confidence            467778888888888888888888888888888888888888888888888888888888774  467788888888888


Q ss_pred             cccccccCcccccc
Q psy12580         82 LGLKTRSRDATLSR   95 (239)
Q Consensus        82 l~~a~~~~~~~~~~   95 (239)
                      +++|...++..+.+
T Consensus       137 L~~A~~~g~~~iv~  150 (156)
T d1bd8a_         137 LELALQRGAQDLVD  150 (156)
T ss_dssp             HHHHHHSCCHHHHH
T ss_pred             HHHHHHcCCHHHHH
Confidence            88887777655443

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=7.8e-15  Score=107.41  Aligned_cols=92  Identities=24%  Similarity=0.354  Sum_probs=74.8

Q ss_pred             CcCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCc------ccccc
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQD------LTKIN   75 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~------~~~~~   75 (239)
                      .+||.+|.+|+||||+|+..++.+++++|++.|++++..|..|.|||+.|+..|+.++++.++. .+..      .....
T Consensus        30 ~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~  108 (221)
T d1iknd_          30 AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQ-SCTTPHLHSILKATN  108 (221)
T ss_dssp             CCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHH-STTTTSSSCGGGCCC
T ss_pred             CCcccCCCCCCccccccccccccccccccccccccccccccccccccccccccccccccchhhh-hcccccccccccccc
Confidence            3789999999999999999999999999999999999999999999999999999999998854 3222      22334


Q ss_pred             cCCCCccccccccCccccc
Q psy12580         76 FKDQSWLGLKTRSRDATLS   94 (239)
Q Consensus        76 ~~~~t~l~~a~~~~~~~~~   94 (239)
                      ..+.|+++.+...+.....
T Consensus       109 ~~~~t~l~~a~~~~~~~~~  127 (221)
T d1iknd_         109 YNGHTCLHLASIHGYLGIV  127 (221)
T ss_dssp             TTCCCHHHHHHHTTCHHHH
T ss_pred             cccchhhhHHhhcCChhhe
Confidence            4566777776665554433

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.50  E-value=2e-16  Score=123.80  Aligned_cols=95  Identities=15%  Similarity=0.151  Sum_probs=76.7

Q ss_pred             CcCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccC--CCCCCHHHHHHHcCCHhHHHHHHhhcCCcccc---ccc
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATN--RGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTK---INF   76 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~--~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~---~~~   76 (239)
                      .+||.+|.+|+||||+||.+|+.++|++|++.|++++..+  .+|.||||+|+..|+.++|++|+. .+++...   .+.
T Consensus       117 ~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~-~~~~~~~~~~~~~  195 (346)
T d2ajaa1         117 EIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCE-LAPTEATAMIQAE  195 (346)
T ss_dssp             SSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHH-SCGGGHHHHHHHH
T ss_pred             CcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHHhhHHHHHHHHH-cCCcccccccccC
Confidence            3689999999999999999999999999999999999876  469999999999999999999964 6655433   334


Q ss_pred             CCCCccccccccCcccccccc
Q psy12580         77 KDQSWLGLKTRSRDATLSRHK   97 (239)
Q Consensus        77 ~~~t~l~~a~~~~~~~~~~~~   97 (239)
                      .+.+++..|...++..+.+..
T Consensus       196 ~~~t~l~~A~~~g~~~iv~~L  216 (346)
T d2ajaa1         196 NYYAFRWAAVGRGHHNVINFL  216 (346)
T ss_dssp             HHHHHHHHHSTTCCHHHHHHH
T ss_pred             CCcchhhHHhhcCHHHHHHHH
Confidence            456677777777877766654

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=6.5e-15  Score=101.83  Aligned_cols=81  Identities=22%  Similarity=0.171  Sum_probs=71.6

Q ss_pred             hHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCccccccccCccc
Q psy12580         13 SPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWLGLKTRSRDAT   92 (239)
Q Consensus        13 tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~   92 (239)
                      +|||+||..|+.+++++|+++|+++|.+|..|+||||.|+ .|+.+++++|+ +.+++++..+..+.+++..+...+...
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll-~~~a~~~~~~~~~~~~l~~~~~~~~~~   80 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLL-LRGANPDLKDRTGFAVIHDAARAGFLD   80 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-ccccccccccc-ccccccccccccCcccccccccccccc
Confidence            8999999999999999999999999999999999999886 78999999995 589999999999999988777666654


Q ss_pred             ccc
Q psy12580         93 LSR   95 (239)
Q Consensus        93 ~~~   95 (239)
                      ...
T Consensus        81 ~~~   83 (156)
T d1ihba_          81 TLQ   83 (156)
T ss_dssp             HHH
T ss_pred             ccc
Confidence            443

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.44  E-value=3.2e-14  Score=108.17  Aligned_cols=85  Identities=24%  Similarity=0.285  Sum_probs=76.1

Q ss_pred             CCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCccccccccC
Q psy12580         10 HGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWLGLKTRSR   89 (239)
Q Consensus        10 ~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~   89 (239)
                      +|.|||++||..|+.++|++|+++|+++|.+|.+|+||||+|+..|+.+++++|+ +.+.+....+..+.+++..+...+
T Consensus        39 ~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll-~~~~~~~~~~~~~~~~L~~a~~~~  117 (291)
T d1s70b_          39 DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLV-ENGANINQPDNEGWIPLHAAASCG  117 (291)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             CCchHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCceeeeeec-cccccccccccccccccccccccc
Confidence            4679999999999999999999999999999999999999999999999999995 578888888888899998888777


Q ss_pred             cccccc
Q psy12580         90 DATLSR   95 (239)
Q Consensus        90 ~~~~~~   95 (239)
                      ......
T Consensus       118 ~~~~~~  123 (291)
T d1s70b_         118 YLDIAE  123 (291)
T ss_dssp             CHHHHH
T ss_pred             ccchhh
Confidence            655444

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.44  E-value=1.4e-13  Score=94.68  Aligned_cols=61  Identities=30%  Similarity=0.522  Sum_probs=46.9

Q ss_pred             cCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHH
Q psy12580          3 YVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL   63 (239)
Q Consensus         3 ~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~L   63 (239)
                      +++.+|.+|+||||+||..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|
T Consensus        92 ~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          92 DVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            5666777777777777777777777777777777777777777777777777777777765

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.4e-13  Score=99.32  Aligned_cols=90  Identities=31%  Similarity=0.413  Sum_probs=76.5

Q ss_pred             ccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccC-CCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCccc
Q psy12580          5 SVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATN-RGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWLG   83 (239)
Q Consensus         5 ~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~-~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l~   83 (239)
                      +....+|.||||.|+..++.+++++|++.|+.++..+ .+|+||||.|+..|+.+++++|+ +.|++++..|..|.||++
T Consensus       105 ~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll-~~gad~~~~~~~G~tpl~  183 (221)
T d1iknd_         105 KATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLL-KCGADVNRVTYQGYSPYQ  183 (221)
T ss_dssp             GCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHH-TTTCCSCCCCTTCCCGGG
T ss_pred             cccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHH-hcCCcccccCCCCCCHHH
Confidence            3455667888888888888888888888888888776 57999999999999999999995 689999999999999999


Q ss_pred             cccccCcccccc
Q psy12580         84 LKTRSRDATLSR   95 (239)
Q Consensus        84 ~a~~~~~~~~~~   95 (239)
                      +|...+...+..
T Consensus       184 ~A~~~~~~~~~~  195 (221)
T d1iknd_         184 LTWGRPSTRIQQ  195 (221)
T ss_dssp             GCTTSSCHHHHH
T ss_pred             HHHHCCCHHHHH
Confidence            998877765554

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.41  E-value=2.6e-13  Score=103.90  Aligned_cols=49  Identities=27%  Similarity=0.267  Sum_probs=45.6

Q ss_pred             CCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCcccccc
Q psy12580         37 VNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWLGLKT   86 (239)
Q Consensus        37 ~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~   86 (239)
                      +|.+|..|+||||+|+..|+.++|++|+ +.|++++..|..|.||+++|.
T Consensus       252 in~~D~~G~TpLh~A~~~g~~~iv~~Ll-~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         252 LNAQDSNGDTCLNIAARLGNISIVDALL-DYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             TTCCCTTSCCHHHHHHHHCCHHHHHHHH-HTTCCTTCCCTTSCCGGGGTC
T ss_pred             ccCCCCCCCCHHHHHHHcCCHHHHHHHH-HCCCCCCCCCCCCCCHHHHcC
Confidence            6889999999999999999999999995 589999999999999999875

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=3.3e-13  Score=97.83  Aligned_cols=87  Identities=33%  Similarity=0.418  Sum_probs=79.7

Q ss_pred             cCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCccccc
Q psy12580          6 VTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWLGLK   85 (239)
Q Consensus         6 ~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a   85 (239)
                      ..+..|.+||+.|+..+...+++.+++.|.+++.+|..|.||||+|+..|+.+++++|+ +.|++++..|.+|.||+++|
T Consensus       139 ~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll-~~Gad~n~~d~~G~TpL~~A  217 (228)
T d1k1aa_         139 VDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLV-RSGADSSLKNCHNDTPLMVA  217 (228)
T ss_dssp             CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTSCCTTTTC
T ss_pred             ccccchhhHHHHHHHhhhhhhhhhhhhhccccccccccCcchHHHHHHcCCHHHHHHHH-HCCCCCCCCCCCCCCHHHHH
Confidence            45667999999999999999999999999999999999999999999999999999995 68999999999999999999


Q ss_pred             cccCcccc
Q psy12580         86 TRSRDATL   93 (239)
Q Consensus        86 ~~~~~~~~   93 (239)
                      ...++..+
T Consensus       218 ~~~~~~di  225 (228)
T d1k1aa_         218 RSRRVIDI  225 (228)
T ss_dssp             SSHHHHHH
T ss_pred             HhCCCccc
Confidence            87665443

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=4.9e-13  Score=101.06  Aligned_cols=72  Identities=26%  Similarity=0.360  Sum_probs=57.2

Q ss_pred             HHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCccccccccCccccccc
Q psy12580         25 KLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWLGLKTRSRDATLSRH   96 (239)
Q Consensus        25 ~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~   96 (239)
                      +++++|+++|++++.+|..|.||||.|+..|+.+++++|+...+.+++..|.+|.||+++|...++..+.+.
T Consensus       200 ~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~  271 (285)
T d1wdya_         200 AITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAEL  271 (285)
T ss_dssp             HHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHH
Confidence            455555666777777888888999999988888888888766788888888888888888888887766654

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.6e-12  Score=89.43  Aligned_cols=92  Identities=22%  Similarity=0.238  Sum_probs=82.7

Q ss_pred             CcCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCc
Q psy12580          2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSW   81 (239)
Q Consensus         2 ~~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (239)
                      .|+|.+|.+|+||||+|+ .++.+++++|+++|++++.++..|.+|++.++..++.+.+..|+ +.+.+.+..+..+.++
T Consensus        25 ~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~  102 (156)
T d1ihba_          25 VNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLL-EFQADVNIEDNEGNLP  102 (156)
T ss_dssp             CCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTSCCH
T ss_pred             CCcCccCCcccccccccc-cccccccccccccccccccccccCcccccccccccccccccccc-cccccccccccccccc
Confidence            478999999999999886 78999999999999999999999999999999999999999994 5788888889999999


Q ss_pred             cccccccCcccccc
Q psy12580         82 LGLKTRSRDATLSR   95 (239)
Q Consensus        82 l~~a~~~~~~~~~~   95 (239)
                      ++++...+.....+
T Consensus       103 l~~a~~~~~~~~~~  116 (156)
T d1ihba_         103 LHLAAKEGHLRVVE  116 (156)
T ss_dssp             HHHHHHTTCHHHHH
T ss_pred             cccccccccccccc
Confidence            99888887766555

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.25  E-value=7.2e-12  Score=91.55  Aligned_cols=94  Identities=19%  Similarity=0.249  Sum_probs=84.6

Q ss_pred             cCccCCCCCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhhcCCcccccccCCCCcc
Q psy12580          3 YVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWL   82 (239)
Q Consensus         3 ~v~~~~~~g~tpl~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~g~~~~v~~Ll~~~~~~~~~~~~~~~t~l   82 (239)
                      +....+..+.||++.++..++.+++++|++.|.+.+.+|..|+||||+|+..|+.+++++|+.....+++..+.+|.||+
T Consensus        97 ~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpL  176 (229)
T d1ixva_          97 DLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL  176 (229)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHH
T ss_pred             cccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccccccccccccccccccCCch
Confidence            34557778999999999999999999999999999999999999999999999999999997655678899999999999


Q ss_pred             ccccccCccccccc
Q psy12580         83 GLKTRSRDATLSRH   96 (239)
Q Consensus        83 ~~a~~~~~~~~~~~   96 (239)
                      ++|...+...+.+.
T Consensus       177 h~A~~~~~~~~v~~  190 (229)
T d1ixva_         177 FHALAEGHGDAAVL  190 (229)
T ss_dssp             HHHHHTTCHHHHHH
T ss_pred             hhhcccccHHHHHH
Confidence            99999888776664

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.35  E-value=1.8e-06  Score=63.51  Aligned_cols=98  Identities=9%  Similarity=-0.031  Sum_probs=62.2

Q ss_pred             CCCCCceeeccCCCceeeeeeeeccCCchHHHHHHHHHhHhhhcC-CCceeeeeeeeeCCCceEEEEeeCCCCCHHHHhh
Q psy12580        113 GPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFS-HPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLH  191 (239)
Q Consensus       113 g~~g~v~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~-h~~iv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~  191 (239)
                      ++.+.||+....++.+++|.........  ...+.+|...+..+. +--+.+++.+...++..++||++++|.++.+...
T Consensus        25 ~s~~~v~rv~~~~~~~vlk~~~~~~~~~--~~~~~~E~~~l~~l~~~vpvP~vl~~~~~~~~~~lv~~~l~G~~~~~~~~  102 (263)
T d1j7la_          25 MSPAKVYKLVGENENLYLKMTDSRYKGT--TYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLMSEADGVLCSEEYE  102 (263)
T ss_dssp             CSSSEEEEEECSSCEEEEEEECGGGTTS--TTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCSSEEHHHHTT
T ss_pred             CCCCcEEEEEeCCCeEEEEEcCCCcccc--hhhHHHHHHHHHHHhccCCCCcEEEEEecCCceEEEEEeccccccccccc
Confidence            3345689888777888887775442211  134567777777663 4346777888877888899999999988765543


Q ss_pred             cCCCcccCHHHHHHHHHHHHHHhhhhhc
Q psy12580        192 EGAGIVVDFAQALRFAVDVARGMAFLHS  219 (239)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~i~~~l~~lH~  219 (239)
                      ...       ....++.++++.+..||+
T Consensus       103 ~~~-------~~~~~~~~l~~~l~~lH~  123 (263)
T d1j7la_         103 DEQ-------SPEKIIELYAECIRLFHS  123 (263)
T ss_dssp             TCS-------CHHHHHHHHHHHHHHHHT
T ss_pred             ccc-------cHHHHHHHHHHHHHHHhc
Confidence            211       122344555555555554

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=97.78  E-value=5.7e-05  Score=54.92  Aligned_cols=66  Identities=12%  Similarity=0.069  Sum_probs=44.3

Q ss_pred             CCceeeccCCCc-eeeeeeeeccCCchHHHHHHHHHhHhhhcC--CCceeeeeeeeeCCCceEEEEeeCCCCCH
Q psy12580        116 GDTWRGRWQKND-IVAKILAVRNCTPRVSRDFNEEFPKLRIFS--HPNVLPVIGCVNSPPDLVVISQYMAWGSL  186 (239)
Q Consensus       116 g~v~~~~~~~~~-~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~--h~~iv~l~~~~~~~~~~~lv~e~~~~gsL  186 (239)
                      +.||+....++. +++|.-.....     ..+..|...++.+.  .-.+.+++.+...++..++|||+++|.++
T Consensus        25 ~~v~r~~~~~~~~~vlK~~~~~~~-----~~l~~E~~~l~~L~~~gvpvP~v~~~~~~~~~~~~v~~~i~G~~~   93 (255)
T d1nd4a_          25 AAVFRLSAQGRPVLFVKTDLSGAL-----NELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDL   93 (255)
T ss_dssp             CEEEEEECTTSCCEEEEEECSCTT-----SCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECCSSEET
T ss_pred             CeEEEEEeCCCCEEEEEeCCccCH-----hHHHHHHHHHHHHHhcCCCCCceeeecccccceEEEEEeeecccc
Confidence            458988776554 55565433221     23566777777663  23467788888888889999999987654

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=97.43  E-value=0.00015  Score=56.41  Aligned_cols=76  Identities=14%  Similarity=-0.032  Sum_probs=44.5

Q ss_pred             ccccCCCCCCceeeccC--CCceeeeeeeec--c---CCchHHHHHHHHHhHhhhc-CC--CceeeeeeeeeCCCceEEE
Q psy12580        108 TKISSGPNGDTWRGRWQ--KNDIVAKILAVR--N---CTPRVSRDFNEEFPKLRIF-SH--PNVLPVIGCVNSPPDLVVI  177 (239)
Q Consensus       108 ~~ig~g~~g~v~~~~~~--~~~~~vk~~~~~--~---~~~~~~~~~~~e~~~l~~l-~h--~~iv~l~~~~~~~~~~~lv  177 (239)
                      +.+|.|....||+....  ++.+++|.-...  .   ..+....+...|...|+.+ .+  ..+.+++.+.  ++..++|
T Consensus        32 ~eig~G~~N~vfrV~~~~~~~svivKqa~p~~r~~g~~~~~~~~R~~~E~~~L~~~~~~~p~~vP~v~~~d--~~~~~lv  109 (392)
T d2pula1          32 QEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYSD--TEMAVTV  109 (392)
T ss_dssp             EECCSSSSEEEEEEEC----CEEEEEEECCGGGC--CCCCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEEE--TTTTEEE
T ss_pred             EEeCCCceEeEEEEEeCCCCeEEEEecCCchhcccCCCCCCCHHHHHHHHHHHHHhhhhCCCCcceEEEEc--CCCCEEE
Confidence            45788988899998763  345666643321  1   1111223345677777765 22  3466666554  3345799


Q ss_pred             EeeCCCCC
Q psy12580        178 SQYMAWGS  185 (239)
Q Consensus       178 ~e~~~~gs  185 (239)
                      ||++++..
T Consensus       110 mE~L~~~~  117 (392)
T d2pula1         110 MEDLSHLK  117 (392)
T ss_dssp             ECCCTTSE
T ss_pred             EeccCCcc
Confidence            99997654

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=95.21  E-value=0.035  Score=41.35  Aligned_cols=65  Identities=11%  Similarity=0.046  Sum_probs=37.8

Q ss_pred             CCceeeccC-CCceeeeeeeeccCCchHHHHHHHHHhHhhhcCCCc--eeeeee-----eeeCCCceEEEEeeCCC
Q psy12580        116 GDTWRGRWQ-KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPN--VLPVIG-----CVNSPPDLVVISQYMAW  183 (239)
Q Consensus       116 g~v~~~~~~-~~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~--iv~l~~-----~~~~~~~~~lv~e~~~~  183 (239)
                      ..||+.... |..+++|+-.....+   ..++..|...+..+....  ++..+.     .+...+..+.++++++|
T Consensus        36 N~vy~v~~~dg~~~VlK~~rp~~~s---~~~i~~E~~~l~~L~~~gipv~~p~~~~g~~~~~~~~~~~~l~~~~~G  108 (325)
T d1zyla1          36 NRVYQFQDEDRRRFVVKFYRPERWT---ADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVFPSVGG  108 (325)
T ss_dssp             SEEEEECCTTCCCEEEEEECTTTSC---HHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETTEEEEEEECCCC
T ss_pred             ceeEEEEcCCCCEEEEEEeCCCCCC---HHHHHHHHHHHHHHHhcCCCCCCceecCCCeeeeeeeEEEEEEeecCC
Confidence            459999874 556888887544333   245667777776663211  222211     22334467888998865

>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Choline kinase
domain: Choline kinase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.06  E-value=0.025  Score=43.39  Aligned_cols=70  Identities=11%  Similarity=0.174  Sum_probs=40.0

Q ss_pred             ccccCCCCCCceeeccCC---------CceeeeeeeeccCCchHHHHHHHHHhHhhhcC-CCceeeeeeeeeCCCceEEE
Q psy12580        108 TKISSGPNGDTWRGRWQK---------NDIVAKILAVRNCTPRVSRDFNEEFPKLRIFS-HPNVLPVIGCVNSPPDLVVI  177 (239)
Q Consensus       108 ~~ig~g~~g~v~~~~~~~---------~~~~vk~~~~~~~~~~~~~~~~~e~~~l~~l~-h~~iv~l~~~~~~~~~~~lv  177 (239)
                      +.++.|-.-.+|+.....         ..+++++.. .  ... .....+|..+++.+. +.-..++++++..    .+|
T Consensus        48 ~~l~GGltN~~y~v~~~~~~~~~~~~~~~vllRi~g-~--~~~-~idr~~E~~i~~~ls~~gl~Pkll~~~~~----g~I  119 (395)
T d1nw1a_          48 SRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYF-N--PET-ESHLVAESVIFTLLSERHLGPKLYGIFSG----GRL  119 (395)
T ss_dssp             EEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEEC-S--CCC-HHHHHHHHHHHHHHHHTTSSSCEEEEETT----EEE
T ss_pred             EEcCCccccceEEEEeCCCCccccCCCCcEEEEecC-C--cch-hhHHHHHHHHHHHHHhCCCCCeEEEEcCC----ceE
Confidence            345556666788776432         223333322 1  111 233457888888774 3334577777643    589


Q ss_pred             EeeCCCCC
Q psy12580        178 SQYMAWGS  185 (239)
Q Consensus       178 ~e~~~~gs  185 (239)
                      +||+++.+
T Consensus       120 ~efi~g~~  127 (395)
T d1nw1a_         120 EEYIPSRP  127 (395)
T ss_dssp             ECCCCEEE
T ss_pred             EEEecccc
Confidence            99998643