Psyllid ID: psy1263

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-----
Protein Sequence
MCENSIDTLHHFKKIVPNLVRNLKNLILAGYSPEHDVSGVSDPFLQVKILKLLRILGKNDVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLRSFFTTFTAK
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccEEEEEEEccc
Coil and Loop (DISEMBL)
MCENSIDTLHHFKKIVPNLVRNLKNLILagyspehdvsgvsdpfLQVKILKLLRILGKNDVEASEAMNDILAQVATNtetsknvgntILYETVLSIMDiksesglrsFFTTFTAK
Flexible Loop (DISEMBL)
mcensidtLHHFKKIVPNLVRNLKNLILAGYSPEHDVSGVSDPFLQVKILKLLRILGKNDVEASEAMNDILAQVatntetsknvgnTILYETVLSIMdiksesglrsffttftak
Low Complexity Region (SEG)
MCENSIDTLHHFKKIVPNLVRNLKNLILAGYSPEHDVSGVSDPFLQVKILKLLRILGKNDVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLRSFFTTFTAK
Disordered region (IsUnstruct)
*****IDTLHHFKKIVPNLVRNLKNLILAGYSPEHDVSGVSDPFLQVKILKLLRILGKNDVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLRSFFTT****
Disordered Region (DISOPRED)
******DTLHHFKKIVPNLVRNLKNLILAGYSPEHDVSGVSDPFLQVKILKLLRILGKNDVEASEAMNDILAQVAT*****KNVGNTILYETVLSIMDIKSESGLRSFFTTFTA*
Disordered Region (DISEMBL)
MCENSIDTLHHFKKIVPNLVRNLKNLILAGYSPEHDVSGVSDPFLQVKILKLLRILGKNDVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLRSFFTTFTAK
Disordered Region (DISPRO)
MCENSIDTLHHFKKIVPNLVRNLKNLILAGYSPEHDVSGVSDPFLQVKILKLLRILGKNDVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLRSFFTTFTAK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MCENSIDTLHHFKKIVPNLVRNLKNLILAGYSPEHDVSGVSDPFLQVKILKLLRILGKNDVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLRSFFTTFTAK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	115	2.2.26 [Sep-21-2011]
P22892	822	AP-1 complex subunit gamm	yes	N/A	0.921	0.128	0.820	7e-47
O43747	822	AP-1 complex subunit gamm	yes	N/A	0.921	0.128	0.820	7e-47
Q5R5M2	822	AP-1 complex subunit gamm	yes	N/A	0.921	0.128	0.811	3e-46
Q8I8U2	895	AP-1 complex subunit gamm	yes	N/A	0.921	0.118	0.669	2e-36
Q99128	853	AP-1 complex subunit gamm	N/A	N/A	0.921	0.124	0.650	2e-36
O75843	785	AP-1 complex subunit gamm	no	N/A	0.921	0.135	0.650	3e-36
O88512	791	AP-1 complex subunit gamm	no	N/A	0.921	0.134	0.632	5e-34
Q9ZUI6	862	AP-1 complex subunit gamm	yes	N/A	0.921	0.122	0.523	9e-28
Q9UU81	865	AP-1 complex subunit gamm	yes	N/A	0.991	0.131	0.421	2e-21
Q84K16	876	AP-1 complex subunit gamm	no	N/A	0.921	0.121	0.457	2e-19

>sp|P22892|AP1G1_MOUSE AP-1 complex subunit gamma-1 OS=Mus musculus GN=Ap1g1 PE=1 SV=3

 Score =  185 bits (470), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 87/106 (82%), Positives = 98/106 (92%)

Query: 1   MCENSIDTLHHFKKIVPNLVRNLKNLILAGYSPEHDVSGVSDPFLQVKILKLLRILGKND 60
           MCE S D L HF+K+VP LVR LKNLI++GYSPEHDVSG+SDPFLQV+IL+LLRILG+ND
Sbjct: 201 MCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRND 260

Query: 61  VEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLR 106
            ++SEAMNDILAQVATNTETSKNVGN ILYETVL+IMDIKSESGLR
Sbjct: 261 DDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLR 306

Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.
Mus musculus (taxid: 10090)

>sp|O43747|AP1G1_HUMAN AP-1 complex subunit gamma-1 OS=Homo sapiens GN=AP1G1 PE=1 SV=5

 Score =  185 bits (470), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 87/106 (82%), Positives = 98/106 (92%)

Query: 1   MCENSIDTLHHFKKIVPNLVRNLKNLILAGYSPEHDVSGVSDPFLQVKILKLLRILGKND 60
           MCE S D L HF+K+VP LVR LKNLI++GYSPEHDVSG+SDPFLQV+IL+LLRILG+ND
Sbjct: 201 MCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRND 260

Query: 61  VEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLR 106
            ++SEAMNDILAQVATNTETSKNVGN ILYETVL+IMDIKSESGLR
Sbjct: 261 DDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLR 306

Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.

Homo sapiens (taxid: 9606)

>sp|Q5R5M2|AP1G1_PONAB AP-1 complex subunit gamma-1 OS=Pongo abelii GN=AP1G1 PE=2 SV=1

 Score =  183 bits (464), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 86/106 (81%), Positives = 97/106 (91%)

Query: 1   MCENSIDTLHHFKKIVPNLVRNLKNLILAGYSPEHDVSGVSDPFLQVKILKLLRILGKND 60
           MCE S D   HF+K+VP LVR LKNLI++GYSPEHDVSG+SDPFLQV+IL+LLRILG+ND
Sbjct: 201 MCERSPDMPAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRND 260

Query: 61  VEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLR 106
            ++SEAMNDILAQVATNTETSKNVGN ILYETVL+IMDIKSESGLR
Sbjct: 261 DDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLR 306

Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.

Pongo abelii (taxid: 9601)

>sp|Q8I8U2|AP1G_DICDI AP-1 complex subunit gamma OS=Dictyostelium discoideum GN=ap1g1 PE=1 SV=1

 Score =  150 bits (380), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 71/106 (66%), Positives = 89/106 (83%)

Query: 1   MCENSIDTLHHFKKIVPNLVRNLKNLILAGYSPEHDVSGVSDPFLQVKILKLLRILGKND 60
           +CE     + HFKK+VP LVR LK+L  +GY PEHD+ GV+DPFLQVKIL+LLRILG+ND
Sbjct: 199 ICEMDSTQIIHFKKMVPQLVRILKSLTSSGYLPEHDIGGVTDPFLQVKILRLLRILGQND 258

Query: 61  VEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLR 106
            EAS+AMNDILAQV+TNT+++KNVGN ILYE V +IM I+SE+GL+
Sbjct: 259 PEASDAMNDILAQVSTNTDSTKNVGNAILYECVQTIMTIESENGLK 304

Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting in the trans-Golgi network (TGN) and endosomes. The AP complexes mediate the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules. Also involved in early steps of phagocytosis and macropinocytosis.

Dictyostelium discoideum (taxid: 44689)

>sp|Q99128|AP1G1_USTMA AP-1 complex subunit gamma-1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=APL4 PE=3 SV=2

 Score =  150 bits (379), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 69/106 (65%), Positives = 90/106 (84%)

Query: 1   MCENSIDTLHHFKKIVPNLVRNLKNLILAGYSPEHDVSGVSDPFLQVKILKLLRILGKND 60
           +C    + L  +++ VP LV++LK+L+  GYSPEHDVSG++DPFLQVKIL+LLRILGK +
Sbjct: 203 ICRQDDEALTVYRRAVPLLVQHLKSLVTTGYSPEHDVSGITDPFLQVKILRLLRILGKEN 262

Query: 61  VEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLR 106
            +ASE MNDILAQVATNTE SKNVGN+ILYETVL+I++I +++GLR
Sbjct: 263 AQASETMNDILAQVATNTEASKNVGNSILYETVLTILEIDADNGLR 308

Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The AP-1 complex interacts directly with clathrin (By similarity). Required for apical growth extension.

Ustilago maydis (strain 521 / FGSC 9021) (taxid: 237631)

>sp|O75843|AP1G2_HUMAN AP-1 complex subunit gamma-like 2 OS=Homo sapiens GN=AP1G2 PE=1 SV=1

 Score =  149 bits (377), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 69/106 (65%), Positives = 87/106 (82%)

Query: 1   MCENSIDTLHHFKKIVPNLVRNLKNLILAGYSPEHDVSGVSDPFLQVKILKLLRILGKND 60
           +CE S   L HF+K+VP LV  L+ L+  GYS EH +SGVSDPFLQV+IL+LLRILG+N 
Sbjct: 202 LCERSPAALRHFRKVVPQLVHILRTLVTMGYSTEHSISGVSDPFLQVQILRLLRILGRNH 261

Query: 61  VEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLR 106
            E+SE MND+LAQVATNT+TS+N GN +L+ETVL+IMDI+S +GLR
Sbjct: 262 EESSETMNDLLAQVATNTDTSRNAGNAVLFETVLTIMDIRSAAGLR 307

May function in protein sorting in late endosomes or multivesucular bodies (MVBs). Involved in MVB-asssisted maturation of hepatitis B virus (HBV).

Homo sapiens (taxid: 9606)

>sp|O88512|AP1G2_MOUSE AP-1 complex subunit gamma-like 2 OS=Mus musculus GN=Ap1g2 PE=2 SV=2

 Score =  142 bits (359), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 67/106 (63%), Positives = 85/106 (80%)

Query: 1   MCENSIDTLHHFKKIVPNLVRNLKNLILAGYSPEHDVSGVSDPFLQVKILKLLRILGKND 60
           +CE +   L HF+K+VP LV+ L+ L+  GYS EH +SGVSDPFLQV+IL+LLRILG+N 
Sbjct: 202 LCERNPAALRHFRKVVPQLVQILRTLVTTGYSTEHSISGVSDPFLQVQILRLLRILGRNH 261

Query: 61  VEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLR 106
            E+SE MND+LAQVATNT+TS+N GN +L ETVL+IM I S +GLR
Sbjct: 262 EESSETMNDLLAQVATNTDTSRNAGNAVLLETVLTIMAIHSAAGLR 307

May function in protein sorting in late endosomes or multivesucular bodies (MVBs).

Mus musculus (taxid: 10090)

>sp|Q9ZUI6|AP1G2_ARATH AP-1 complex subunit gamma-2 OS=Arabidopsis thaliana GN=At1g60070 PE=2 SV=2

 Score =  122 bits (305), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 56/107 (52%), Positives = 81/107 (75%), Gaps = 1/107 (0%)

Query: 1   MCENSIDTLHHF-KKIVPNLVRNLKNLILAGYSPEHDVSGVSDPFLQVKILKLLRILGKN 59
           +C+ S + L +F KK    LV+ L+++  + YSPE+DV+G++DPFL +++LKLLR+LG+ 
Sbjct: 204 ICKVSSEALEYFRKKCTEGLVKTLRDIANSPYSPEYDVAGITDPFLHIRLLKLLRVLGQG 263

Query: 60  DVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLR 106
           D +AS+ MNDILAQVA+ TE++KN GN ILYE V +IM I+   GLR
Sbjct: 264 DADASDCMNDILAQVASKTESNKNAGNAILYECVQTIMSIEENGGLR 310

Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9UU81|AP1G1_SCHPO AP-1 complex subunit gamma-1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=apl4 PE=3 SV=1

 Score =  100 bits (250), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 48/114 (42%), Positives = 75/114 (65%)

Query: 2   CENSIDTLHHFKKIVPNLVRNLKNLILAGYSPEHDVSGVSDPFLQVKILKLLRILGKNDV 61
           C+ +   +  F+    +L+  ++ L  + YS EH++  +SDPFLQVKIL+ L ILG+N+ 
Sbjct: 230 CKINPSLISRFESQADDLIYRIRQLSTSTYSSEHNIGNISDPFLQVKILQFLSILGQNNP 289

Query: 62  EASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLRSFFTTFTAK 115
           +  + M+D+LAQV TNT++S+N GN ILY+ V +I+D+ S+S LR       AK
Sbjct: 290 KIYDKMSDLLAQVCTNTDSSRNAGNAILYQAVRTILDLNSDSSLRVLGVNILAK 343

Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The AP-1 complex interacts directly with clathrin.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q84K16|AP1G1_ARATH AP-1 complex subunit gamma-1 OS=Arabidopsis thaliana GN=GAMMA-ADR PE=1 SV=1

 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 49/107 (45%), Positives = 78/107 (72%), Gaps = 1/107 (0%)

Query: 1   MCENSIDTLHHFK-KIVPNLVRNLKNLILAGYSPEHDVSGVSDPFLQVKILKLLRILGKN 59
           +C  + + L +F+ K    L++ L+++  + Y PE+DV+G++DPFL +++L+LLR+LG+ 
Sbjct: 204 LCTINDEALEYFRTKCTEGLIKTLRDITNSAYQPEYDVAGITDPFLHIRLLRLLRVLGQG 263

Query: 60  DVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLR 106
           D +AS+ M DILAQVAT TE++KN GN +LYE V +IM I+  + LR
Sbjct: 264 DADASDLMTDILAQVATKTESNKNAGNAVLYECVETIMAIEDTNSLR 310

Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	115
307198063	834	AP-1 complex subunit gamma-1 [Harpegnath	0.921	0.127	0.952	2e-52
307165960	852	AP-1 complex subunit gamma-1 [Camponotus	0.921	0.124	0.943	4e-52
345482909	868	PREDICTED: AP-1 complex subunit gamma-1-	0.921	0.122	0.943	5e-52
383850090	873	PREDICTED: AP-1 complex subunit gamma-1	0.921	0.121	0.933	6e-52
350403596	862	PREDICTED: AP-1 complex subunit gamma-1-	0.921	0.122	0.933	6e-52
340722863	862	PREDICTED: AP-1 complex subunit gamma-1-	0.921	0.122	0.933	6e-52
357621208	731	hypothetical protein KGM_20019 [Danaus p	0.921	0.145	0.943	6e-51
393809287	887	adaptor protein complex-1 gamma subunit	0.921	0.119	0.943	8e-51
322782492	841	hypothetical protein SINV_05709 [Solenop	0.921	0.126	0.901	2e-50
242003650	834	conserved hypothetical protein [Pediculu	0.921	0.127	0.933	3e-50

>gi|307198063|gb|EFN79116.1| AP-1 complex subunit gamma-1 [Harpegnathos saltator]

 Score =  209 bits (531), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 101/106 (95%), Positives = 105/106 (99%)

Query: 1   MCENSIDTLHHFKKIVPNLVRNLKNLILAGYSPEHDVSGVSDPFLQVKILKLLRILGKND 60
           MCENSIDTL+HFKKIVPNLVR LKNLILAGYSPEHDVSGVSDPFLQVKIL+LLRILG+ND
Sbjct: 201 MCENSIDTLNHFKKIVPNLVRILKNLILAGYSPEHDVSGVSDPFLQVKILRLLRILGRND 260

Query: 61  VEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLR 106
           V+ASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLR
Sbjct: 261 VDASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLR 306

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307165960|gb|EFN60287.1| AP-1 complex subunit gamma-1 [Camponotus floridanus]

 Score =  208 bits (529), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 100/106 (94%), Positives = 105/106 (99%)

Query: 1   MCENSIDTLHHFKKIVPNLVRNLKNLILAGYSPEHDVSGVSDPFLQVKILKLLRILGKND 60
           MCENS+DTL+HFKKIVPNLVR LKNLILAGYSPEHDVSGVSDPFLQVKIL+LLRILG+ND
Sbjct: 217 MCENSVDTLNHFKKIVPNLVRILKNLILAGYSPEHDVSGVSDPFLQVKILRLLRILGRND 276

Query: 61  VEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLR 106
           V+ASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLR
Sbjct: 277 VDASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLR 322

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345482909|ref|XP_003424700.1| PREDICTED: AP-1 complex subunit gamma-1-like isoform 2 [Nasonia vitripennis] gi|345482911|ref|XP_001599424.2| PREDICTED: AP-1 complex subunit gamma-1-like isoform 1 [Nasonia vitripennis]

 Score =  207 bits (528), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 100/106 (94%), Positives = 105/106 (99%)

Query: 1   MCENSIDTLHHFKKIVPNLVRNLKNLILAGYSPEHDVSGVSDPFLQVKILKLLRILGKND 60
           MCENS+DTL+HFKKIVPNLVR LKNLILAGYSPEHDVSGVSDPFLQVKIL+LLRILG+ND
Sbjct: 233 MCENSVDTLNHFKKIVPNLVRILKNLILAGYSPEHDVSGVSDPFLQVKILRLLRILGRND 292

Query: 61  VEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLR 106
           V+ASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLR
Sbjct: 293 VDASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLR 338

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383850090|ref|XP_003700650.1| PREDICTED: AP-1 complex subunit gamma-1 [Megachile rotundata]

 Score =  207 bits (528), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 99/106 (93%), Positives = 105/106 (99%)

Query: 1   MCENSIDTLHHFKKIVPNLVRNLKNLILAGYSPEHDVSGVSDPFLQVKILKLLRILGKND 60
           MCENS+DTL+HFKKIVPNLVR LKNLILAGYSPEHDVSGVSDPFLQVKIL+LLRILG+ND
Sbjct: 243 MCENSVDTLNHFKKIVPNLVRILKNLILAGYSPEHDVSGVSDPFLQVKILRLLRILGRND 302

Query: 61  VEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLR 106
           ++ASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLR
Sbjct: 303 IDASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLR 348

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350403596|ref|XP_003486848.1| PREDICTED: AP-1 complex subunit gamma-1-like isoform 1 [Bombus impatiens]

 Score =  207 bits (527), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 99/106 (93%), Positives = 105/106 (99%)

Query: 1   MCENSIDTLHHFKKIVPNLVRNLKNLILAGYSPEHDVSGVSDPFLQVKILKLLRILGKND 60
           MCENS+DTL+HFKKIVPNLVR LKNLILAGYSPEHDVSGVSDPFLQVKIL+LLRILG+ND
Sbjct: 233 MCENSVDTLNHFKKIVPNLVRILKNLILAGYSPEHDVSGVSDPFLQVKILRLLRILGRND 292

Query: 61  VEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLR 106
           ++ASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLR
Sbjct: 293 IDASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLR 338

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340722863|ref|XP_003399820.1| PREDICTED: AP-1 complex subunit gamma-1-like isoform 1 [Bombus terrestris]

 Score =  207 bits (527), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 99/106 (93%), Positives = 105/106 (99%)

Query: 1   MCENSIDTLHHFKKIVPNLVRNLKNLILAGYSPEHDVSGVSDPFLQVKILKLLRILGKND 60
           MCENS+DTL+HFKKIVPNLVR LKNLILAGYSPEHDVSGVSDPFLQVKIL+LLRILG+ND
Sbjct: 233 MCENSVDTLNHFKKIVPNLVRILKNLILAGYSPEHDVSGVSDPFLQVKILRLLRILGRND 292

Query: 61  VEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLR 106
           ++ASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLR
Sbjct: 293 IDASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLR 338

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357621208|gb|EHJ73123.1| hypothetical protein KGM_20019 [Danaus plexippus]

 Score =  204 bits (519), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 100/106 (94%), Positives = 102/106 (96%)

Query: 1   MCENSIDTLHHFKKIVPNLVRNLKNLILAGYSPEHDVSGVSDPFLQVKILKLLRILGKND 60
           MCENS DTL+HFKKIVPNLVR LKNLILAGYSPEHDVSGVSDPFLQVKIL+LLRILGKND
Sbjct: 109 MCENSPDTLNHFKKIVPNLVRILKNLILAGYSPEHDVSGVSDPFLQVKILRLLRILGKND 168

Query: 61  VEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLR 106
            EASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSES LR
Sbjct: 169 AEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESSLR 214

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|393809287|gb|AFN25814.1| adaptor protein complex-1 gamma subunit [Bombyx mori]

 Score =  203 bits (517), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 100/106 (94%), Positives = 102/106 (96%)

Query: 1   MCENSIDTLHHFKKIVPNLVRNLKNLILAGYSPEHDVSGVSDPFLQVKILKLLRILGKND 60
           MCENS DTL+HFKKIVPNLVR LKNLILAGYSPEHDVSGVSDPFLQVKIL+LLRILGKND
Sbjct: 248 MCENSPDTLNHFKKIVPNLVRILKNLILAGYSPEHDVSGVSDPFLQVKILRLLRILGKND 307

Query: 61  VEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLR 106
            EASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSES LR
Sbjct: 308 AEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESSLR 353

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322782492|gb|EFZ10441.1| hypothetical protein SINV_05709 [Solenopsis invicta]

 Score =  202 bits (515), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 101/112 (90%), Positives = 105/112 (93%), Gaps = 6/112 (5%)

Query: 1   MCENSIDTLHHFKK------IVPNLVRNLKNLILAGYSPEHDVSGVSDPFLQVKILKLLR 54
           MCENS+DTL+HFKK      IVPNLVR LKNLILAGYSPEHDVSGVSDPFLQVKIL+LLR
Sbjct: 201 MCENSVDTLNHFKKECGHREIVPNLVRILKNLILAGYSPEHDVSGVSDPFLQVKILRLLR 260

Query: 55  ILGKNDVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLR 106
           ILG+NDVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLR
Sbjct: 261 ILGRNDVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLR 312

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242003650|ref|XP_002422813.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212505671|gb|EEB10075.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  202 bits (513), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 99/106 (93%), Positives = 101/106 (95%)

Query: 1   MCENSIDTLHHFKKIVPNLVRNLKNLILAGYSPEHDVSGVSDPFLQVKILKLLRILGKND 60
           MCE+S DTL HFKKIVPNLVR LKNLILAGYSPEHDVSGVSDPFLQVKIL+LLRILGKND
Sbjct: 213 MCEHSPDTLQHFKKIVPNLVRILKNLILAGYSPEHDVSGVSDPFLQVKILRLLRILGKND 272

Query: 61  VEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLR 106
            EASE MNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLR
Sbjct: 273 AEASETMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLR 318

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	115
FB|FBgn0030089	982	AP-1gamma "Adaptor Protein com	0.921	0.107	0.857	3.8e-42
UNIPROTKB|F1MF68	822	AP1G1 "Uncharacterized protein	0.921	0.128	0.820	4.3e-41
UNIPROTKB|E2RPG3	822	AP1G1 "Uncharacterized protein	0.921	0.128	0.820	4.3e-41
UNIPROTKB|O43747	822	AP1G1 "AP-1 complex subunit ga	0.921	0.128	0.820	4.3e-41
MGI|MGI:101919	822	Ap1g1 "adaptor protein complex	0.921	0.128	0.820	4.3e-41
UNIPROTKB|F1S3C7	844	AP1G1 "Uncharacterized protein	0.921	0.125	0.820	4.8e-41
UNIPROTKB|B3KXW5	845	AP1G1 "AP-1 complex subunit ga	0.921	0.125	0.820	4.8e-41
ZFIN|ZDB-GENE-030131-3187	821	ap1g1 "adaptor-related protein	0.921	0.129	0.820	7.1e-41
WB|WBGene00000158	829	apg-1 [Caenorhabditis elegans	0.921	0.127	0.792	9.5e-41
UNIPROTKB|F1NDA9	820	AP1G1 "Uncharacterized protein	0.921	0.129	0.805	5.2e-40

FB|FBgn0030089 AP-1gamma "Adaptor Protein complex 1, gamma subunit" [Drosophila melanogaster (taxid:7227)]

 Score = 456 (165.6 bits), Expect = 3.8e-42, P = 3.8e-42
 Identities = 96/112 (85%), Positives = 99/112 (88%)

Query:     1 MCENSIDTLHHFKK------IVPNLVRNLKNLILAGYSPEHDVSGVSDPFLQVKILKLLR 54
             MCENS DTL HFKK      IVPNLVR LKNLIL GYSPEHDVSGVSDPFLQVKIL+LLR
Sbjct:   242 MCENSSDTLMHFKKDSGNREIVPNLVRILKNLILGGYSPEHDVSGVSDPFLQVKILRLLR 301

Query:    55 ILGKNDVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLR 106
             ILG ND +ASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDI+SE GLR
Sbjct:   302 ILGHNDPDASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIRSEGGLR 353

GO:0030135 "coated vesicle" evidence=TAS

GO:0016183 "synaptic vesicle coating" evidence=TAS

GO:0008021 "synaptic vesicle" evidence=TAS

GO:0007269 "neurotransmitter secretion" evidence=NAS

GO:0006901 "vesicle coating" evidence=TAS

GO:0030131 "clathrin adaptor complex" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0044431 "Golgi apparatus part" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0030136 "clathrin-coated vesicle" evidence=IDA

GO:0055037 "recycling endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

GO:0030141 "secretory granule" evidence=IDA

GO:0033363 "secretory granule organization" evidence=IMP

GO:0048749 "compound eye development" evidence=IMP

GO:0035976 "AP1 complex" evidence=IMP;IPI

UNIPROTKB|F1MF68 AP1G1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 444 (161.4 bits), Expect = 4.3e-41, P = 4.3e-41
 Identities = 87/106 (82%), Positives = 98/106 (92%)

Query:     1 MCENSIDTLHHFKKIVPNLVRNLKNLILAGYSPEHDVSGVSDPFLQVKILKLLRILGKND 60
             MCE S D L HF+K+VP LVR LKNLI++GYSPEHDVSG+SDPFLQV+IL+LLRILG+ND
Sbjct:   201 MCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRND 260

Query:    61 VEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLR 106
              ++SEAMNDILAQVATNTETSKNVGN ILYETVL+IMDIKSESGLR
Sbjct:   261 DDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLR 306

GO:0044431 "Golgi apparatus part" evidence=IEA

GO:0030131 "clathrin adaptor complex" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|E2RPG3 AP1G1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 444 (161.4 bits), Expect = 4.3e-41, P = 4.3e-41
 Identities = 87/106 (82%), Positives = 98/106 (92%)

Query:     1 MCENSIDTLHHFKKIVPNLVRNLKNLILAGYSPEHDVSGVSDPFLQVKILKLLRILGKND 60
             MCE S D L HF+K+VP LVR LKNLI++GYSPEHDVSG+SDPFLQV+IL+LLRILG+ND
Sbjct:   201 MCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRND 260

Query:    61 VEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLR 106
              ++SEAMNDILAQVATNTETSKNVGN ILYETVL+IMDIKSESGLR
Sbjct:   261 DDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLR 306

GO:0055037 "recycling endosome" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0030136 "clathrin-coated vesicle" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

GO:0005802 "trans-Golgi network" evidence=IEA

GO:0044431 "Golgi apparatus part" evidence=IEA

GO:0030131 "clathrin adaptor complex" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|O43747 AP1G1 "AP-1 complex subunit gamma-1" [Homo sapiens (taxid:9606)]

 Score = 444 (161.4 bits), Expect = 4.3e-41, P = 4.3e-41
 Identities = 87/106 (82%), Positives = 98/106 (92%)

Query:     1 MCENSIDTLHHFKKIVPNLVRNLKNLILAGYSPEHDVSGVSDPFLQVKILKLLRILGKND 60
             MCE S D L HF+K+VP LVR LKNLI++GYSPEHDVSG+SDPFLQV+IL+LLRILG+ND
Sbjct:   201 MCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRND 260

Query:    61 VEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLR 106
              ++SEAMNDILAQVATNTETSKNVGN ILYETVL+IMDIKSESGLR
Sbjct:   261 DDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLR 306

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0030131 "clathrin adaptor complex" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0055037 "recycling endosome" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005215 "transporter activity" evidence=TAS

GO:0005737 "cytoplasm" evidence=TAS

GO:0030119 "AP-type membrane coat adaptor complex" evidence=TAS

GO:0019894 "kinesin binding" evidence=IPI

GO:0030136 "clathrin-coated vesicle" evidence=IDA

GO:0000139 "Golgi membrane" evidence=TAS

GO:0005765 "lysosomal membrane" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006892 "post-Golgi vesicle-mediated transport" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016044 "cellular membrane organization" evidence=TAS

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=TAS

GO:0030659 "cytoplasmic vesicle membrane" evidence=TAS

GO:0032588 "trans-Golgi network membrane" evidence=TAS

GO:0050690 "regulation of defense response to virus by virus" evidence=TAS

GO:0030665 "clathrin-coated vesicle membrane" evidence=ISS

MGI|MGI:101919 Ap1g1 "adaptor protein complex AP-1, gamma 1 subunit" [Mus musculus (taxid:10090)]

 Score = 444 (161.4 bits), Expect = 4.3e-41, P = 4.3e-41
 Identities = 87/106 (82%), Positives = 98/106 (92%)

Query:     1 MCENSIDTLHHFKKIVPNLVRNLKNLILAGYSPEHDVSGVSDPFLQVKILKLLRILGKND 60
             MCE S D L HF+K+VP LVR LKNLI++GYSPEHDVSG+SDPFLQV+IL+LLRILG+ND
Sbjct:   201 MCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRND 260

Query:    61 VEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLR 106
              ++SEAMNDILAQVATNTETSKNVGN ILYETVL+IMDIKSESGLR
Sbjct:   261 DDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLR 306

GO:0000226 "microtubule cytoskeleton organization" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005518 "collagen binding" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0005802 "trans-Golgi network" evidence=IDA;TAS

GO:0005829 "cytosol" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=TAS

GO:0006897 "endocytosis" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=ISO

GO:0008565 "protein transporter activity" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0015630 "microtubule cytoskeleton" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=TAS

GO:0019894 "kinesin binding" evidence=ISO

GO:0030117 "membrane coat" evidence=IEA

GO:0030131 "clathrin adaptor complex" evidence=IEA

GO:0030136 "clathrin-coated vesicle" evidence=ISO

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0055037 "recycling endosome" evidence=ISO

UNIPROTKB|F1S3C7 AP1G1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 444 (161.4 bits), Expect = 4.8e-41, P = 4.8e-41
 Identities = 87/106 (82%), Positives = 98/106 (92%)

Query:     1 MCENSIDTLHHFKKIVPNLVRNLKNLILAGYSPEHDVSGVSDPFLQVKILKLLRILGKND 60
             MCE S D L HF+K+VP LVR LKNLI++GYSPEHDVSG+SDPFLQV+IL+LLRILG+ND
Sbjct:   223 MCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRND 282

Query:    61 VEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLR 106
              ++SEAMNDILAQVATNTETSKNVGN ILYETVL+IMDIKSESGLR
Sbjct:   283 DDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLR 328

GO:0055037 "recycling endosome" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0030136 "clathrin-coated vesicle" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

GO:0005802 "trans-Golgi network" evidence=IEA

GO:0044431 "Golgi apparatus part" evidence=IEA

GO:0030131 "clathrin adaptor complex" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|B3KXW5 AP1G1 "AP-1 complex subunit gamma-1" [Homo sapiens (taxid:9606)]

 Score = 444 (161.4 bits), Expect = 4.8e-41, P = 4.8e-41
 Identities = 87/106 (82%), Positives = 98/106 (92%)

Query:     1 MCENSIDTLHHFKKIVPNLVRNLKNLILAGYSPEHDVSGVSDPFLQVKILKLLRILGKND 60
             MCE S D L HF+K+VP LVR LKNLI++GYSPEHDVSG+SDPFLQV+IL+LLRILG+ND
Sbjct:   224 MCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRND 283

Query:    61 VEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLR 106
              ++SEAMNDILAQVATNTETSKNVGN ILYETVL+IMDIKSESGLR
Sbjct:   284 DDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLR 329

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030131 "clathrin adaptor complex" evidence=IEA

GO:0044431 "Golgi apparatus part" evidence=IEA

ZFIN|ZDB-GENE-030131-3187 ap1g1 "adaptor-related protein complex 1, gamma 1 subunit" [Danio rerio (taxid:7955)]

 Score = 442 (160.7 bits), Expect = 7.1e-41, P = 7.1e-41
 Identities = 87/106 (82%), Positives = 97/106 (91%)

Query:     1 MCENSIDTLHHFKKIVPNLVRNLKNLILAGYSPEHDVSGVSDPFLQVKILKLLRILGKND 60
             MCE S D L HF+K+VP LVR LKNLI++GYSPEHDVSG+SDPFLQV+IL+LLRILGK D
Sbjct:   203 MCERSPDMLSHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGKGD 262

Query:    61 VEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLR 106
              ++SEAMNDILAQVATNTETSKNVGN ILYETVL+IMDIKSESGLR
Sbjct:   263 DDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLR 308

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0030131 "clathrin adaptor complex" evidence=IEA

GO:0016020 "membrane" evidence=IEA

WB|WBGene00000158 apg-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 441 (160.3 bits), Expect = 9.5e-41, P = 9.5e-41
 Identities = 84/106 (79%), Positives = 98/106 (92%)

Query:     1 MCENSIDTLHHFKKIVPNLVRNLKNLILAGYSPEHDVSGVSDPFLQVKILKLLRILGKND 60
             MCE S D L+HFKK+VPNLVR LKNL+++GYSPEHDV+G+SDPFLQVKIL+LLR+LGK+D
Sbjct:   223 MCEKSPDVLNHFKKLVPNLVRILKNLLMSGYSPEHDVTGISDPFLQVKILRLLRVLGKDD 282

Query:    61 VEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLR 106
             V  +E MNDILAQVATNTET+KNVGN ILYETVL+IM+IKSESGLR
Sbjct:   283 VRVTEEMNDILAQVATNTETAKNVGNAILYETVLTIMEIKSESGLR 328

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

GO:0030131 "clathrin adaptor complex" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0001703 "gastrulation with mouth forming first" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0009306 "protein secretion" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F1NDA9 AP1G1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 434 (157.8 bits), Expect = 5.2e-40, P = 5.2e-40
 Identities = 87/108 (80%), Positives = 98/108 (90%)

Query:     1 MCENSIDTLHHFKKI--VPNLVRNLKNLILAGYSPEHDVSGVSDPFLQVKILKLLRILGK 58
             MCE S D L HF+K+  VP LVR LKNLI++GYSPEHDVSG+SDPFLQV+IL+LLRILG+
Sbjct:   201 MCERSPDMLAHFRKVSLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGR 260

Query:    59 NDVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLR 106
             ND ++SEAMNDILAQVATNTETSKNVGN ILYETVL+IMDIKSESGLR
Sbjct:   261 NDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLR 308

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030131 "clathrin adaptor complex" evidence=IEA

GO:0044431 "Golgi apparatus part" evidence=IEA

GO:0005802 "trans-Golgi network" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

GO:0030136 "clathrin-coated vesicle" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0055037 "recycling endosome" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5R5M2	AP1G1_PONAB	No assigned EC number	0.8113	0.9217	0.1289	yes	N/A
Q8I8U2	AP1G_DICDI	No assigned EC number	0.6698	0.9217	0.1184	yes	N/A
O43747	AP1G1_HUMAN	No assigned EC number	0.8207	0.9217	0.1289	yes	N/A
P22892	AP1G1_MOUSE	No assigned EC number	0.8207	0.9217	0.1289	yes	N/A
Q9ZUI6	AP1G2_ARATH	No assigned EC number	0.5233	0.9217	0.1229	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	115
pfam01602	522	pfam01602, Adaptin_N, Adaptin N terminal region	2e-11

>gnl|CDD|216598 pfam01602, Adaptin_N, Adaptin N terminal region

 Score = 58.8 bits (143), Expect = 2e-11
 Identities = 32/96 (33%), Positives = 45/96 (46%), Gaps = 19/96 (19%)

Query: 13  KKIVPNLVRNLKNLILAGYSPEHDVSGVSDPFLQVKILKLLRILGK-NDVEASEAMNDIL 71
            K++P LVR L NL+            V +P+LQVKIL+LL      +  E  E + DIL
Sbjct: 187 NKLLPLLVRRLCNLL-----------TVCNPWLQVKILRLLTRYAPQDPREPKELLEDIL 235

Query: 72  AQVATNTETSKNVGNTILYETVLSIMDIKSESGLRS 107
             +        N  N +LYE V +I+ +  E  L  
Sbjct: 236 NLLQ-------NSNNAVLYEAVKTIIHLDPEPELIV 264

This family consists of the N terminal region of various alpha, beta and gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein complexes. The adaptor protein (AP) complexes are involved in the formation of clathrin-coated pits and vesicles. The N-terminal region of the various adaptor proteins (APs) is constant by comparison to the C-terminal which is variable within members of the AP-2 family; and it has been proposed that this constant region interacts with another uniform component of the coated vesicles. Length = 522

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	115
KOG1062|consensus	866		100.0
KOG1077|consensus	938		99.93
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.09
KOG1059|consensus	877		98.67
PTZ00429	746	beta-adaptin; Provisional	97.78
PF09324	86	DUF1981: Domain of unknown function (DUF1981); Int	93.69
KOG1992|consensus	960		83.89

>KOG1062|consensus

Probab=100.00  E-value=1.3e-38  Score=268.31  Aligned_cols=115  Identities=61%  Similarity=0.938  Sum_probs=113.8

Q ss_pred             CcccChhcHHHHHhhHHHHHHHHHHHHhcCCCCCccccCCCchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCC
Q psy1263           1 MCENSIDTLHHFKKIVPNLVRNLKNLILAGYSPEHDVSGVSDPFLQVKILKLLRILGKNDVEASEAMNDILAQVATNTET   80 (115)
Q Consensus         1 ~~~~~~~~~~~~~~~vp~lv~iL~~lv~~~~~~eY~y~gvp~PwLQvklLrlL~~l~~~d~~~~~~l~~vL~~i~~~~~~   80 (115)
                      +|+++|+..+.|++++|.||.||++++++++++||+|+|||||||||+|||+|+.||.+|++.+|.|+|+|.++++++|+
T Consensus       206 ~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntds  285 (866)
T KOG1062|consen  206 LCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDS  285 (866)
T ss_pred             HHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccc
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcchhHHHHHHHHHHHHhcCCChhHHHHHHHHhcC
Q psy1263          81 SKNVGNTILYETVLSIMDIKSESGLRSFFTTFTAK  115 (115)
Q Consensus        81 ~~na~~AILyEav~ti~~~~~~~~L~~~av~~lgk  115 (115)
                      ++|+|||||||||+||++++++++||++|+|+|||
T Consensus       286 skN~GnAILYE~V~TI~~I~~~~~LrvlainiLgk  320 (866)
T KOG1062|consen  286 SKNAGNAILYECVRTIMDIRSNSGLRVLAINILGK  320 (866)
T ss_pred             cccchhHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence            99999999999999999999999999999999997

>KOG1077|consensus

Probab=99.93  E-value=9.5e-26  Score=189.44  Aligned_cols=111  Identities=23%  Similarity=0.362  Sum_probs=101.5

Q ss_pred             ChhcHHHHHhhHHHHHHHHHHHHhcC-CC-CCccccCCCchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHHHhhCC--
Q psy1263           5 SIDTLHHFKKIVPNLVRNLKNLILAG-YS-PEHDVSGVSDPFLQVKILKLLRILGK-NDVEASEAMNDILAQVATNTE--   79 (115)
Q Consensus         5 ~~~~~~~~~~~vp~lv~iL~~lv~~~-~~-~eY~y~gvp~PwLQvklLrlL~~l~~-~d~~~~~~l~~vL~~i~~~~~--   79 (115)
                      ...+|+.|+.++|..+.+|.+++... .+ .||.||+||+||||||++|+|+.++. .|+....++.++|.+|+.+++  
T Consensus       215 vk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~  294 (938)
T KOG1077|consen  215 VKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEP  294 (938)
T ss_pred             HHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccC
Confidence            34567999999999999999999777 56 79999999999999999999999997 599999999999999999865  


Q ss_pred             -C-----CcchhHHHHHHHHHHHHhcCCChhHHHHHHHHhcC
Q psy1263          80 -T-----SKNVGNTILYETVLSIMDIKSESGLRSFFTTFTAK  115 (115)
Q Consensus        80 -~-----~~na~~AILyEav~ti~~~~~~~~L~~~av~~lgk  115 (115)
                       .     .+||.||||||||++|+++|++++|++.|+|+||+
T Consensus       295 ~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~  336 (938)
T KOG1077|consen  295 PKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQ  336 (938)
T ss_pred             ccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence             2     24899999999999999999999999999999984

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.09  E-value=1.1e-09  Score=88.94  Aligned_cols=90  Identities=24%  Similarity=0.406  Sum_probs=77.3

Q ss_pred             cHHHHHhhHHHHHHHHHHHHhcCCCCCccccCCCchHHHHHHHHHHHhhCCCCHHHH--HHHHHHHHHHHhhCCCCcchh
Q psy1263           8 TLHHFKKIVPNLVRNLKNLILAGYSPEHDVSGVSDPFLQVKILKLLRILGKNDVEAS--EAMNDILAQVATNTETSKNVG   85 (115)
Q Consensus         8 ~~~~~~~~vp~lv~iL~~lv~~~~~~eY~y~gvp~PwLQvklLrlL~~l~~~d~~~~--~~l~~vL~~i~~~~~~~~na~   85 (115)
                      +++.+..++|.++++|.+++           +.++||+|++++++|+.+.+.++...  +.+.+.+...++      +++
T Consensus       182 ~~~~~~~~~~~~~~~L~~~l-----------~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~------s~~  244 (526)
T PF01602_consen  182 NDDSYKSLIPKLIRILCQLL-----------SDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQ------SSS  244 (526)
T ss_dssp             THHHHTTHHHHHHHHHHHHH-----------TCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHH------HHH
T ss_pred             CcchhhhhHHHHHHHhhhcc-----------cccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhh------ccc
Confidence            45555689999999999988           89999999999999999999777666  556666666665      789


Q ss_pred             HHHHHHHHHHHHhcCCChhHHHHHHHHhc
Q psy1263          86 NTILYETVLSIMDIKSESGLRSFFTTFTA  114 (115)
Q Consensus        86 ~AILyEav~ti~~~~~~~~L~~~av~~lg  114 (115)
                      .||+|||++++.++.+++.+...+++.|+
T Consensus       245 ~~V~~e~~~~i~~l~~~~~~~~~~~~~L~  273 (526)
T PF01602_consen  245 PSVVYEAIRLIIKLSPSPELLQKAINPLI  273 (526)
T ss_dssp             HHHHHHHHHHHHHHSSSHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhcchHHHHhhHHHHH
Confidence            99999999999999999998899988875

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG1059|consensus

Probab=98.67  E-value=3.1e-08  Score=84.81  Aligned_cols=94  Identities=19%  Similarity=0.342  Sum_probs=80.7

Q ss_pred             CcccChhcHHHHHhhHHHHHHHHHHHHhcCCCCCccccCCCchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCC
Q psy1263           1 MCENSIDTLHHFKKIVPNLVRNLKNLILAGYSPEHDVSGVSDPFLQVKILKLLRILGKNDVEASEAMNDILAQVATNTET   80 (115)
Q Consensus         1 ~~~~~~~~~~~~~~~vp~lv~iL~~lv~~~~~~eY~y~gvp~PwLQvklLrlL~~l~~~d~~~~~~l~~vL~~i~~~~~~   80 (115)
                      +|+.+.++|+.|-.+.|.|.++|-.              ..+-|..+|+++++..|.+-.|....++.+=|+..+.+|  
T Consensus       205 ICELArKnPknyL~LAP~ffklltt--------------SsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT--  268 (877)
T KOG1059|consen  205 ICELARKNPQNYLQLAPLFYKLLVT--------------SSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMEST--  268 (877)
T ss_pred             HHHHHhhCCcccccccHHHHHHHhc--------------cCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhh--
Confidence            5889999999999999999998877              567899999999999999989999999999999999988  


Q ss_pred             CcchhHHHHHHHHHHHHhc-----CCC-hhHHHHHHHHh
Q psy1263          81 SKNVGNTILYETVLSIMDI-----KSE-SGLRSFFTTFT  113 (115)
Q Consensus        81 ~~na~~AILyEav~ti~~~-----~~~-~~L~~~av~~l  113 (115)
                         ...++||||||||++.     .++ .....+|+.-|
T Consensus       269 ---~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKL  304 (877)
T KOG1059|consen  269 ---VAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKL  304 (877)
T ss_pred             ---HHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHH
Confidence               8899999999999998     222 33556666544

>PTZ00429 beta-adaptin; Provisional

Probab=97.78  E-value=0.00017  Score=62.86  Aligned_cols=64  Identities=20%  Similarity=0.284  Sum_probs=45.4

Q ss_pred             chHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCcchhHHHHHHHHHHHHhcCCC--hhHHHHHHH
Q psy1263          42 DPFLQVKILKLLRILGKNDVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSE--SGLRSFFTT  111 (115)
Q Consensus        42 ~PwLQvklLrlL~~l~~~d~~~~~~l~~vL~~i~~~~~~~~na~~AILyEav~ti~~~~~~--~~L~~~av~  111 (115)
                      +||.|+.+|++|..+.+.+..   +..+++..+...... +|  .||+|||+++++++.+.  ++++..++.
T Consensus       232 ~EW~Qi~IL~lL~~y~P~~~~---e~~~il~~l~~~Lq~-~N--~AVVl~Aik~il~l~~~~~~~~~~~~~~  297 (746)
T PTZ00429        232 NEWGQLYILELLAAQRPSDKE---SAETLLTRVLPRMSH-QN--PAVVMGAIKVVANLASRCSQELIERCTV  297 (746)
T ss_pred             ChHHHHHHHHHHHhcCCCCcH---HHHHHHHHHHHHhcC-CC--HHHHHHHHHHHHHhcCcCCHHHHHHHHH
Confidence            599999999999998775433   345566666554322 23  69999999999999764  556555543

>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins

Probab=93.69  E-value=0.74  Score=29.59  Aligned_cols=71  Identities=10%  Similarity=0.182  Sum_probs=57.2

Q ss_pred             chHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHHHhhCCCCcchhHHHHHHHHHHHHhcCCChhHHHHHHHHh
Q psy1263          42 DPFLQVKILKLLRILG--KNDVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLRSFFTTFT  113 (115)
Q Consensus        42 ~PwLQvklLrlL~~l~--~~d~~~~~~l~~vL~~i~~~~~~~~na~~AILyEav~ti~~~~~~~~L~~~av~~l  113 (115)
                      +--.|-.+|+=+..+-  ..+.++++.+.+++.+++.+--..--+|.-++|++++.+.. +.++++...|...+
T Consensus        11 ~~~fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~-~~~e~lv~~af~~~   83 (86)
T PF09324_consen   11 NFNFQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAK-DNDESLVRLAFQIV   83 (86)
T ss_pred             ccHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHh-CCCccHHHHHHHHH
Confidence            3447888888888873  35889999999999999987444445899999999999876 66789999988765

It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].

>KOG1992|consensus

Probab=83.89  E-value=14  Score=33.42  Aligned_cols=100  Identities=24%  Similarity=0.287  Sum_probs=63.8

Q ss_pred             cccChhcHHHHHhhHHHHHHHHHHHHhcCCCCCccccCCCchHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHHHhh
Q psy1263           2 CENSIDTLHHFKKIVPNLVRNLKNLILAGYSPEHDVSGVSDPFLQVKILKLLRILGKN----DVEASEAMNDILAQVATN   77 (115)
Q Consensus         2 ~~~~~~~~~~~~~~vp~lv~iL~~lv~~~~~~eY~y~gvp~PwLQvklLrlL~~l~~~----d~~~~~~l~~vL~~i~~~   77 (115)
                      |+.++.+.-.=..+.|.....|..+....-.|+    +-.++|+.--|||.++.+...    -+....++.+++.++..|
T Consensus       529 re~~~~~if~~~~iap~~~~ll~nLf~a~s~p~----~~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KN  604 (960)
T KOG1992|consen  529 RENSNAKIFGAEDIAPFVEILLTNLFKALSLPG----KAENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKN  604 (960)
T ss_pred             ccCccccccchhhcchHHHHHHHHHHHhccCCc----ccccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcC
Confidence            333333333344678888888898885553333    367899999999999988753    234445555555555443


Q ss_pred             CCCCcchhHHHHHHHHHHHHhc--CCChhHHH
Q psy1263          78 TETSKNVGNTILYETVLSIMDI--KSESGLRS  107 (115)
Q Consensus        78 ~~~~~na~~AILyEav~ti~~~--~~~~~L~~  107 (115)
                      .  ++-.-|.-|||+|-+++..  +.++++.+
T Consensus       605 P--s~P~fnHYLFEsi~~li~~t~~~~~~~vs  634 (960)
T KOG1992|consen  605 P--SNPQFNHYLFESIGLLIRKTCKANPSAVS  634 (960)
T ss_pred             C--CCchhHHHHHHHHHHHHHHHhccCchHHH
Confidence            2  2235678999999998876  44444433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	115
1w63_A	618	Ap1 Clathrin Adaptor Core Length = 618		4e-48

>pdb|1W63|A Chain A, Ap1 Clathrin Adaptor Core Length = 618

Iteration: 1
 Score =  186 bits (471), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 87/106 (82%), Positives = 98/106 (92%)
Query: 1   MCENSIDTLHHFKKIVPNLVRNLKNLILAGYSPEHDVSGVSDPFLQVKILKLLRILGKND 60
           MCE S D L HF+K+VP LVR LKNLI++GYSPEHDVSG+SDPFLQV+IL+LLRILG+ND
Sbjct: 206 MCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRND 265
Query: 61  VEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLR 106
            ++SEAMNDILAQVATNTETSKNVGN ILYETVL+IMDIKSESGLR
Sbjct: 266 DDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLR 311

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	115
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	2e-29
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	4e-18
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	4e-09

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 618

 Score =  109 bits (274), Expect = 2e-29
 Identities = 87/107 (81%), Positives = 98/107 (91%)

Query: 1   MCENSIDTLHHFKKIVPNLVRNLKNLILAGYSPEHDVSGVSDPFLQVKILKLLRILGKND 60
           MCE S D L HF+K+VP LVR LKNLI++GYSPEHDVSG+SDPFLQV+IL+LLRILG+ND
Sbjct: 206 MCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRND 265

Query: 61  VEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLRS 107
            ++SEAMNDILAQVATNTETSKNVGN ILYETVL+IMDIKSESGLR 
Sbjct: 266 DDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRV 312

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Length = 621

 Score = 77.3 bits (190), Expect = 4e-18
 Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 14/118 (11%)

Query: 1   MCENSIDTLHHFKKIVPNLVRNLKNLILAGYS--PEHDVSGVSDPFLQVKILKLLRILGK 58
           + + + +    FK  V   V  L  ++ +  +   ++    V  P+L VK+L+LL+    
Sbjct: 214 LAQKNPE---EFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPP 270

Query: 59  NDVEA---------SEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLRS 107
            +  A            +N       +      N  N +L+E +  I+   SE  L  
Sbjct: 271 PEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLV 328

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Length = 591

 Score = 51.7 bits (124), Expect = 4e-09
 Identities = 10/82 (12%), Positives = 29/82 (35%)

Query: 22  NLKNLILAGYSPEHDVSGVSDPFLQVKILKLLRILGKNDVEASEAMNDILAQVATNTETS 81
           NL +L     +           + Q+ IL  L      D   ++++ + +    ++  ++
Sbjct: 195 NLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSA 254

Query: 82  KNVGNTILYETVLSIMDIKSES 103
             +    +    L ++   S+ 
Sbjct: 255 VVLSAVKVLMKFLELLPKDSDY 276

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	115
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.84
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.8
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	98.88
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.06

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.84  E-value=4.1e-21  Score=159.53  Aligned_cols=114  Identities=21%  Similarity=0.283  Sum_probs=102.8

Q ss_pred             cccChhcHHHHHhhHHHHHHHHHHHHhcC-CC-CCccccCCCchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHHHhhC
Q psy1263           2 CENSIDTLHHFKKIVPNLVRNLKNLILAG-YS-PEHDVSGVSDPFLQVKILKLLRILGK-NDVEASEAMNDILAQVATNT   78 (115)
Q Consensus         2 ~~~~~~~~~~~~~~vp~lv~iL~~lv~~~-~~-~eY~y~gvp~PwLQvklLrlL~~l~~-~d~~~~~~l~~vL~~i~~~~   78 (115)
                      |++.+++|+.|..++|.++++|++++..+ ++ +||+|||+|+||+|+++|++|+.+++ +|++.++.++++|.+++++.
T Consensus       212 ~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~  291 (621)
T 2vgl_A          212 TTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKA  291 (621)
T ss_dssp             HHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Confidence            56777888999999999999999999876 66 99999999999999999999999998 57899999999999999873


Q ss_pred             -CCC-------cchhHHHHHHHHHHHHhcCCChhHHHHHHHHhcC
Q psy1263          79 -ETS-------KNVGNTILYETVLSIMDIKSESGLRSFFTTFTAK  115 (115)
Q Consensus        79 -~~~-------~na~~AILyEav~ti~~~~~~~~L~~~av~~lgk  115 (115)
                       +..       +|+++||+|||++++++++++++++..+++.|++
T Consensus       292 ~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~~~~~~L~~  336 (621)
T 2vgl_A          292 QEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQ  336 (621)
T ss_dssp             HSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred             ccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence             333       4899999999999999999999999999998863

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.80  E-value=2.3e-19  Score=148.26  Aligned_cols=113  Identities=76%  Similarity=1.113  Sum_probs=104.5

Q ss_pred             cccChhcHHHHHhhHHHHHHHHHHHHhcCCCCCccccCCCchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCC
Q psy1263           2 CENSIDTLHHFKKIVPNLVRNLKNLILAGYSPEHDVSGVSDPFLQVKILKLLRILGKNDVEASEAMNDILAQVATNTETS   81 (115)
Q Consensus         2 ~~~~~~~~~~~~~~vp~lv~iL~~lv~~~~~~eY~y~gvp~PwLQvklLrlL~~l~~~d~~~~~~l~~vL~~i~~~~~~~   81 (115)
                      |+.+|+..+.|.+++|.++++|++++.+++++||+|+|+++||+|++++++|+.++..|++..+++.++|.+++++++..
T Consensus       207 ~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~  286 (618)
T 1w63_A          207 CERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETS  286 (618)
T ss_dssp             CCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCS
T ss_pred             HHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccc
Confidence            34445555689999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhHHHHHHHHHHHHhcCCChhHHHHHHHHhc
Q psy1263          82 KNVGNTILYETVLSIMDIKSESGLRSFFTTFTA  114 (115)
Q Consensus        82 ~na~~AILyEav~ti~~~~~~~~L~~~av~~lg  114 (115)
                      +|+++||+|||+++++++.+++.++..+++.|+
T Consensus       287 ~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~  319 (618)
T 1w63_A          287 KNVGNAILYETVLTIMDIKSESGLRVLAINILG  319 (618)
T ss_dssp             STHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            999999999999999999998999888888875

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=98.88  E-value=1.3e-10  Score=91.63  Aligned_cols=71  Identities=11%  Similarity=0.237  Sum_probs=39.0

Q ss_pred             cCCCchHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHHHhhCCCCcchhHHHHHHHHHHHHhcCC-ChhHHHHHHHHhc
Q psy1263          38 SGVSDPFLQVKILKLLRILGKND-VEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKS-ESGLRSFFTTFTA  114 (115)
Q Consensus        38 ~gvp~PwLQvklLrlL~~l~~~d-~~~~~~l~~vL~~i~~~~~~~~na~~AILyEav~ti~~~~~-~~~L~~~av~~lg  114 (115)
                      .|+.+||.|+.++|++..+.++| +..++.+.++|...+      +|++.||+|||+++|+.+.. +..++..|++.|+
T Consensus       221 ~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L------~~~~~aVvyEa~k~I~~l~~~~~~~~~~a~~~L~  293 (355)
T 3tjz_B          221 HGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCL------RNKHEMVVYEAASAIVNLPGCSAKELAPAVSVLQ  293 (355)
T ss_dssp             SCCSCHHHHHHHHHHHTCC-----------------CCC------CCSSHHHHHHHHHHHTC-----------CCCTHH
T ss_pred             CCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH------cCCChHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence            46889999999999999999887 788899999888776      47899999999999999977 4556666666553

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=98.06  E-value=2.7e-06  Score=69.50  Aligned_cols=54  Identities=13%  Similarity=0.209  Sum_probs=40.7

Q ss_pred             CchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCcchhHHHHHHHHHHHHhcC
Q psy1263          41 SDPFLQVKILKLLRILGKNDVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIK  100 (115)
Q Consensus        41 p~PwLQvklLrlL~~l~~~d~~~~~~l~~vL~~i~~~~~~~~na~~AILyEav~ti~~~~  100 (115)
                      ++||+|+++||+|+.+.+.++...+.+.+.+   ...   -++.+.+|+|||++++..+.
T Consensus       214 ~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l---~~~---l~~~~~~V~~ea~~~i~~l~  267 (591)
T 2vgl_B          214 CTEWGQIFILDCLSNYNPKDDREAQSICERV---TPR---LSHANSAVVLSAVKVLMKFL  267 (591)
T ss_dssp             CCHHHHHHHHHHHHTSCCCSHHHHHHHHHHH---TTC---SCSSTTHHHHHHHHHHHHSC
T ss_pred             CCchHHHHHHHHHHHhCCCChHHHHHHHHHH---HHH---HcCCChHHHHHHHHHHHHHh
Confidence            5899999999999999987665544443333   222   23556799999999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	115
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.38
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	95.86